diff options
Diffstat (limited to 'gnu/packages/machine-learning.scm')
| -rw-r--r-- | gnu/packages/machine-learning.scm | 40 |
1 files changed, 27 insertions, 13 deletions
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm index 5f14453f01..3897342345 100644 --- a/gnu/packages/machine-learning.scm +++ b/gnu/packages/machine-learning.scm @@ -2796,26 +2796,40 @@ These include a barrier, broadcast, and allreduce.") (define-public python-umap-learn (package (name "python-umap-learn") - (version "0.3.10") + (version "0.5.3") (source (origin - (method url-fetch) - (uri (pypi-uri "umap-learn" version)) + (method git-fetch) ;no tests in pypi release + (uri (git-reference + (url "https://github.com/lmcinnes/umap") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "02ada2yy6km6zgk2836kg1c97yrcpalvan34p8c57446finnpki1")))) + "1315jkb0h1b579y9m59632f0nnpksilm01nxx46in0rq8zna8vsb")))) (build-system python-build-system) - (native-inputs - (list python-joblib python-nose)) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (setenv "HOME" "/tmp") + (invoke "pytest" "-vv" "umap"))))))) + (native-inputs (list python-pytest)) (propagated-inputs - (list python-numba python-numpy python-scikit-learn python-scipy)) + (list python-numba + python-numpy + python-pynndescent + python-scikit-learn + python-scipy + python-tqdm)) (home-page "https://github.com/lmcinnes/umap") - (synopsis - "Uniform Manifold Approximation and Projection") - (description - "Uniform Manifold Approximation and Projection is a dimension reduction -technique that can be used for visualisation similarly to t-SNE, but also for -general non-linear dimension reduction.") + (synopsis "Uniform Manifold Approximation and Projection") + (description "Uniform Manifold Approximation and Projection is a dimension +reduction technique that can be used for visualization similarly to t-SNE, but +also for general non-linear dimension reduction.") (license license:bsd-3))) (define-public nnpack |