diff options
Diffstat (limited to 'gnu/packages/julia-xyz.scm')
| -rw-r--r-- | gnu/packages/julia-xyz.scm | 242 |
1 files changed, 225 insertions, 17 deletions
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index c1ebc0fba1..93fadf318c 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -561,6 +561,38 @@ can be a test-only dependency, allowing it to have potentially heavy dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible.") (license license:expat))) +(define-public julia-codeczlib + (package + (name "julia-codeczlib") + (version "0.7.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaIO/CodecZlib.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0xm603nylkwk4bzx66zv1g3syzrvn3jh9spdx7kvcvgszzyrrgh4")))) + (build-system julia-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-before 'reset-gzip-timestamps 'make-files-writable + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (for-each make-file-writable + (find-files out "\\.gz$")) + #t)))))) + (propagated-inputs + `(("julia-zlib-jll" ,julia-zlib-jll) + ("julia-transcodingstreams" ,julia-transcodingstreams))) + (home-page "https://github.com/JuliaIO/CodecZlib.jl") + (synopsis "Zlib codecs for @code{TranscodingStreams.jl}") + (description "This package provides zlib codecs for +@code{TranscodingStreams.jl}.") + (license license:expat))) + (define-public julia-colors (package (name "julia-colors") @@ -624,11 +656,11 @@ color scales for graphics.") (file-name (git-file-name name version)) (sha256 (base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih")))) - (arguments - '(#:tests? #f)) ;require Documenter, not packaged yet (build-system julia-build-system) (propagated-inputs `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers))) + (native-inputs + `(("julia-documenter" ,julia-documenter))) (home-page "https://github.com/JuliaGraphics/ColorTypes.jl") (synopsis "Basic color types and constructor") (description "This minimalistic package serves as the foundation for @@ -806,14 +838,12 @@ for construction of objects.") (sha256 (base32 "15zbkn32v7xlz7559s0r5a0vkwmjwsswxaqpzijly4lky4jnp33d")))) (build-system julia-build-system) - (arguments - `(#:tests? #f)) ; Documenter.jl not packaged yet. (propagated-inputs `(("julia-staticarrays" ,julia-staticarrays))) - ;(native-inputs - ; `(("julia-documenter" ,julia-documenter) - ; ("julia-forwarddiff" ,julia-forwarddiff) - ; ("julia-unitful" ,julia-unitful))) + (native-inputs + `(("julia-documenter" ,julia-documenter) + ("julia-forwarddiff" ,julia-forwarddiff) + ("julia-unitful" ,julia-unitful))) (home-page "https://github.com/JuliaGeometry/CoordinateTransformations.jl") (synopsis "Coordinate transformations in Julia") (description "@code{CoordinateTransformations} is a Julia package to manage @@ -1745,6 +1775,31 @@ differentiation (AD).") arbitrary functions.") (license license:expat))) +(define-public julia-functors + (package + (name "julia-functors") + (version "0.2.7") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/FluxML/Functors.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "03ry1wn1y2jssq65l29bi6q4ki041aa6gl1nd2w6cgl00k2mrxf3")))) + (build-system julia-build-system) + (home-page "https://fluxml.ai/Functors.jl/stable/") + (synopsis "Design pattern for structures as in machine learning") + (description "This package provides tools to express a design pattern for +dealing with large/ nested structures, as in machine learning and +optimisation. For large machine learning models it can be cumbersome or +inefficient to work with parameters as one big, flat vector, and structs help +in managing complexity; but it is also desirable to easily operate over all +parameters at once, e.g. for changing precision or applying an optimiser +update step.") + (license license:expat))) + (define-public julia-fuzzycompletions (package (name "julia-fuzzycompletions") @@ -1840,6 +1895,73 @@ analysis of dense matrices. The diagonal eigen-decomposition of normal matrices the Schur form is often more useful.") (license license:expat))) +(define-public julia-geometrybasics + (package + (name "julia-geometrybasics") + (version "0.4.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaGeometry/GeometryBasics.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "057j3hjpli3q5b98cqkpi4p10x2k9pyksrz62hjmv1kb5qzdvhsj")))) + (build-system julia-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'remove-earcut + (lambda _ + (substitute* '("Project.toml" + "src/GeometryBasics.jl") + ((".*EarCut.*") "")) + #t)) + (add-after 'unpack 'skip-incompatible-test + (lambda _ + (substitute* "test/runtests.jl" + (("@testset.*MetaT and heterogeneous data.*" all) + (string-append all "return\n"))) + #t))))) + (propagated-inputs + `(("julia-itertools" ,julia-itertools) + ("julia-staticarrays" ,julia-staticarrays) + ("julia-structarrays" ,julia-structarrays) + ("julia-tables" ,julia-tables))) + (native-inputs + `(("julia-offsetarrays" ,julia-offsetarrays))) + (home-page "https://github.com/JuliaGeometry/GeometryBasics.jl") + (synopsis "Basic Geometry Types") + (description "This package aims to offer a standard set of Geometry types, +which easily work with metadata, query frameworks on geometries and different +memory layouts. The aim is to create a solid basis for Graphics/Plotting, +finite elements analysis, Geo applications, and general geometry manipulations +- while offering a Julian API, that still allows performant C-interop.") + (license license:expat))) + +(define-public julia-gr + (package + (name "julia-gr") + (version "0.58.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jheinen/GR.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "18zxa1w2wmrf44c5l10qbh99zjdp7h94gxlymh47cf5kj5fc4xmx")))) + (build-system julia-build-system) + (propagated-inputs + `(("julia-gr-jll" ,julia-gr-jll))) + (home-page "https://github.com/jheinen/GR.jl") + (synopsis "Plotting for Julia based on GR") + (description "This module provides a Julia interface to GR, a framework for +visualisation applications.") + (license license:expat))) + (define-public julia-graphics (package (name "julia-graphics") @@ -2326,6 +2448,39 @@ assigned its own index, which is used to retrieve the value from the indexed images, sometimes called \"colormap images\" or \"paletted images.\"") (license license:expat))) +(define-public julia-infinity + (package + (name "julia-infinity") + (version "0.2.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/cjdoris/Infinity.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1941lwvrdjnrynigzixxin3chpg1ba6xplvcwc89x0f6z658hwmm")))) + (build-system julia-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'remove-timezones.jl + (lambda _ + (substitute* "test/runtests.jl" + (("using TimeZones.*") "") + ((".*infextendedtime.*") "")) + #t))))) + (propagated-inputs + `(("julia-requires" ,julia-requires))) + (native-inputs + `(("julia-compat" ,julia-compat))) + (home-page "https://docs.juliahub.com/Infinity/") + (synopsis "Representation of infinity in Julia") + (description "This package provides representations for infinity and +negative infinity in Julia.") + (license license:expat))) + (define-public julia-inifile (package (name "julia-inifile") @@ -2463,11 +2618,11 @@ as a string together with the return value.") (file-name (git-file-name name version)) (sha256 (base32 "11334fcg2slpwcj0raxf457brhf7pxglgxc6cy8q58ggrpxqfqql")))) - (arguments - '(#:tests? #f)) ;require Documenter, not packaged yet (build-system julia-build-system) (propagated-inputs `(("julia-macrotools" ,julia-macrotools))) + (native-inputs + `(("julia-documenter" ,julia-documenter))) (home-page "https://github.com/FluxML/IRTools.jl") (synopsis "Simple and flexible IR format") (description "This package provides a simple and flexible IR format, @@ -2810,6 +2965,32 @@ expressions involving differing types of units that are then evaluated, resolving them into absolute units.") (license license:expat))) +(define-public julia-media + (package + (name "julia-media") + (version "0.5.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JunoLab/Media.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "05jq9j3vs8yfj2lwz3sh1vk5rha06xdcikp9s2q3dn316vryy6di")))) + (build-system julia-build-system) + ;; Package without Project.toml + (arguments + '(#:julia-package-name "Media")) + (propagated-inputs + `(("julia-macrotools" ,julia-macrotools))) + (home-page "https://github.com/JunoLab/Media.jl") + (synopsis "Unified measure and coordinates types") + (description "This package provides a display system which enables the +user handle multiple input/output devices and decide what media types get +displayed where.") + (license license:expat))) + (define-public julia-missings (package (name "julia-missings") @@ -3125,10 +3306,10 @@ languages like Fortran.") (sha256 (base32 "0ran2vj6ahlzib0g77y7g0jhavy3k9s2mqq23ybpgp9z677wf26h")))) (build-system julia-build-system) - (arguments - '(#:tests? #f)) ;require Documenter, not packaged yet (propagated-inputs `(("julia-offsetarrays" ,julia-offsetarrays))) + (native-inputs + `(("julia-documenter" ,julia-documenter))) (home-page "https://github.com/JuliaArrays/PaddedViews.jl") (synopsis "Add virtual padding to the edges of an array") (description "@code{PaddedViews} provides a simple wrapper type, @@ -4125,8 +4306,7 @@ some performance improvements).") (base32 "1fwiaxdpx1z9dli3jr8kyraych0jbdiny3qklynf0r13px25r6i7")))) (build-system julia-build-system) (arguments - `(#:tests? #f ; Documenter.jl not packaged yet - #:phases + `(#:phases (modify-phases %standard-phases (add-after 'unpack 'skip-doctest (lambda _ @@ -4135,9 +4315,9 @@ some performance improvements).") #t))))) (propagated-inputs `(("julia-offsetarrays" ,julia-offsetarrays))) - ;(native-inputs - ; `(("julia-aqua" ,julia-aqua) - ; ("julia-documenter" ,julia-documenter))) + (native-inputs + `(("julia-aqua" ,julia-aqua) + ("julia-documenter" ,julia-documenter))) (home-page "https://github.com/JuliaArrays/StackViews.jl") (synopsis "No more catcat") (description "StackViews provides only one array type: @code{StackView}. @@ -4541,6 +4721,34 @@ package.") automatic differentiation for its machine learning platform.") (license license:expat))) +(define-public julia-transcodingstreams + (package + (name "julia-transcodingstreams") + (version "0.9.6") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/JuliaIO/TranscodingStreams.jl") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1w3klii293caqiclfh28jggv7f53xclm9fr6xmw38brwrn1hjb48")))) + (build-system julia-build-system) + (arguments + `(#:tests? #f)) ; Circular dependency with various codecs. + (home-page "https://github.com/JuliaIO/TranscodingStreams.jl") + (synopsis "Fast I/O transcoding data streams") + (description "This package provides tools for transcoding data streams +which are: +@itemize +@item fast: small overhead and specialized methods +@item consistent: basic I/O operations work as expected +@item generic: support any I/O objects like files, buffers, pipes, etc. +@item extensible: easy definition for new codec to transcode data +@end itemize") + (license license:expat))) + (define-public julia-typedtables (package (name "julia-typedtables") |