diff options
Diffstat (limited to 'gnu/packages/julia-xyz.scm')
-rw-r--r-- | gnu/packages/julia-xyz.scm | 863 |
1 files changed, 443 insertions, 420 deletions
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index e4be7efdd2..2ad1c4cd5d 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -48,7 +48,7 @@ (base32 "0083pwdyxjb04i330ir9pc8kmp4bwk59lx1jgc9qi05y8j7xzbp0")))) (build-system julia-build-system) (inputs ;required for tests - `(("julia-unitful" ,julia-unitful))) + (list julia-unitful)) (home-page "https://github.com/JuliaGPU/Adapt.jl") (synopsis "General framework for fast Fourier transforms (FFTs)") (description "This package allows multiple FFT packages to co-exist with @@ -137,6 +137,8 @@ ANSI escape codes to another format.") (sha256 (base32 "1g0kyzcdykgs247j72jpc2qqall696jwgb3hnn4cxmbi8bkf7wpk")))) (build-system julia-build-system) + (arguments + `(#:parallel-tests? #f)) (home-page "https://github.com/JuliaTesting/Aqua.jl") (synopsis "Automated quality assurance for Julia packages") (description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages}, @@ -157,17 +159,21 @@ provides functions to run a few automatable checks for Julia packages.") (sha256 (base32 "0cmldnzvdgmfnrnrzgj6v1mfr2rvk5096392rwmhd3iyx7v0pq33")))) (build-system julia-build-system) + (arguments + ;; XXXX: Unexpected failures for i686, e.g., + ;; Expression: @inferred(ArrayInterface.size(Rnr)) === (StaticInt(4),) + ;; Evaluated: (static(2),) === (static(4),) + ;; Disable as stopgap. + `(#:tests? ,(not (target-x86-32?)))) (propagated-inputs - `(("julia-ifelse" ,julia-ifelse) - ("julia-requires" ,julia-requires) - ("julia-static" ,julia-static))) + (list julia-ifelse julia-requires julia-static)) (native-inputs - `(("julia-aqua" ,julia-aqua) - ("julia-bandedmatrices" ,julia-bandedmatrices) - ("julia-blockbandedmatrices" ,julia-blockbandedmatrices) - ("julia-ifelse" ,julia-ifelse) - ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-staticarrays" ,julia-staticarrays))) + (list julia-aqua + julia-bandedmatrices + julia-blockbandedmatrices + julia-ifelse + julia-offsetarrays + julia-staticarrays)) (home-page "https://github.com/JuliaArrays/ArrayInterface.jl") (synopsis "Base array interface primitives") (description "The purpose of this library is to solidify extensions to the @@ -194,7 +200,7 @@ no issues with the upgrade.") (base32 "05q62pks8j23pgbrfny072rrwzrz6q19l68srnjxxv39ncmdmrvg")))) (build-system julia-build-system) (propagated-inputs - `(("julia-fillarrays" ,julia-fillarrays))) + (list julia-fillarrays)) (home-page "https://github.com/JuliaMatrices/ArrayLayouts.jl") (synopsis "Array layouts and general fast linear algebra") (description "This package implements a trait-based framework for describing @@ -218,7 +224,7 @@ much wider class of matrix types than Julia's in-built @code{StridedArray}.") (base32 "00x85lnfln7xkfnirpplzyi8r6q92nfqwya8il156bf7b1pa20gk")))) (build-system julia-build-system) (propagated-inputs - `(("julia-woodburymatrices" ,julia-woodburymatrices))) + (list julia-woodburymatrices)) (home-page "https://github.com/timholy/AxisAlgorithms.jl") (synopsis "Filtering and linear algebra routines for multidimensional arrays") (description "@code{AxisAlgorithms} is a collection of filtering and linear @@ -242,12 +248,9 @@ axis (dimension).") (base32 "03kzan1lm4fxfhzv1xjg3ysf6y7nagcc61vfz15kvdrp1dqxlynk")))) (build-system julia-build-system) (propagated-inputs - `(("julia-rangearrays" ,julia-rangearrays) - ("julia-intervalsets" ,julia-intervalsets) - ("julia-itertools" ,julia-itertools))) + (list julia-rangearrays julia-intervalsets julia-itertools)) (native-inputs - `(("julia-offsetarrays" ,julia-offsetarrays) - ("julia-unitful" ,julia-unitful))) + (list julia-offsetarrays julia-unitful)) (home-page "http://juliaarrays.github.io/AxisArrays.jl/latest/") (synopsis "Arrays where each dimension can have a named axis with values") (description "This package for the Julia language provides an array type @@ -273,10 +276,9 @@ axes, allowing column names or interval selections.") (base32 "0rlfj9gr9ss621v5kw5b06206yaak21s2vq9vk7r8a7p2ylncism")))) (build-system julia-build-system) (propagated-inputs - `(("julia-arraylayouts" ,julia-arraylayouts) - ("julia-fillarrays" ,julia-fillarrays))) + (list julia-arraylayouts julia-fillarrays)) (native-inputs - `(("julia-genericlinearalgebra" ,julia-genericlinearalgebra))) + (list julia-genericlinearalgebra)) (home-page "https://github.com/JuliaMatrices/BandedMatrices.jl") (synopsis "Julia package for representing banded matrices") (description "This package supports representing banded matrices by only @@ -297,7 +299,26 @@ the entries on the bands.") (sha256 (base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8")))) (build-system julia-build-system) - (propagated-inputs `(("julia-json" ,julia-json))) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-tests-i686 + (lambda _ + (substitute* "test/GroupsTests.jl" + (("@test sprint\\(show, g1\\)") + "@test_broken sprint(show, g1)") + (("@test sprint\\(show, g1; context = :boundto => 1\\)") + "@test_broken sprint(show, g1; context = :boundto => 1)") + (("@test sprint\\(show, g1; context = :limit => false\\)") + "@test_broken sprint(show, g1; context = :limit => false)") + (("@test @test_deprecated") "@test_broken")) + (substitute* "test/ExecutionTests.jl" + ;; Evaluated: 12 == 8 + (("@test @ballocated\\(Ref\\(1\\)\\)") + "@test_broken @ballocated(Ref(1))")))))) + '(%standard-phases)))) + (propagated-inputs (list julia-json)) (home-page "https://github.com/JuliaCI/BenchmarkTools.jl") (synopsis "Benchmarking framework for the Julia language") (description "@code{BenchmarkTools.jl} makes performance tracking of Julia @@ -319,13 +340,19 @@ benchmarks as well as comparing benchmark results.") (sha256 (base32 "1by26036fk9mawmcgqxpwizgbs398v9p6vrbsgg7h6llqn3q9iw1")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-64bit?) + '(%standard-phases) + '((modify-phases %standard-phases + (add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* "test/test_blockarrays.jl" + (("Int64") "Int32"))))))))) (propagated-inputs - `(("julia-arraylayouts" ,julia-arraylayouts) - ("julia-fillarrays" ,julia-fillarrays))) + (list julia-arraylayouts julia-fillarrays)) (native-inputs - `(("julia-lazyarrays" ,julia-lazyarrays) - ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-staticarrays" ,julia-staticarrays))) + (list julia-lazyarrays julia-offsetarrays julia-staticarrays)) (home-page "https://github.com/JuliaArrays/BlockArrays.jl") (synopsis "BlockArrays for Julia") (description "A block array is a partition of an array into blocks or @@ -356,11 +383,8 @@ access to the full matrix to use in in for example a linear solver.") (base32 "10n1r6kmmv2wa307jfg9y2m6p16j8hngjp3fjavpbdy1r5haasm9")))) (build-system julia-build-system) (propagated-inputs - `(("julia-arraylayouts" ,julia-arraylayouts) - ("julia-bandedmatrices" ,julia-bandedmatrices) - ("julia-blockarrays" ,julia-blockarrays) - ("julia-fillarrays" ,julia-fillarrays) - ("julia-matrixfactorizations" ,julia-matrixfactorizations))) + (list julia-arraylayouts julia-bandedmatrices julia-blockarrays + julia-fillarrays julia-matrixfactorizations)) (home-page "https://github.com/JuliaMatrices/BlockBandedMatrices.jl") (synopsis "Block-banded matrices and banded-block-banded matrices") (description "This package supports representing block-banded and @@ -384,7 +408,7 @@ A @code{BlockBandedMatrix} is a subtype of @code{BlockMatrix} of (base32 "1l5608ma2ys7v2gpcqbiv9mwfc6yrlqkihrfx1pf7fgv5llhd4fn")))) (build-system julia-build-system) (native-inputs - `(("julia-dataframes" ,julia-dataframes))) + (list julia-dataframes)) (home-page "https://github.com/JuliaIO/BSON.jl") (synopsis "Binary JSON serialisation format") (description "@code{BSON.jl} is a Julia package for working with the Binary @@ -413,7 +437,7 @@ structures.") '(#:tests? #f #:julia-package-name "BufferedStreams" #:julia-package-uuid "e1450e63-4bb3-523b-b2a4-4ffa8c0fd77d")) - (propagated-inputs `(("julia-compat" ,julia-compat))) + (propagated-inputs (list julia-compat)) (home-page "https://github.com/BioJulia/BufferedStreams.jl") (synopsis "Fast composable IO streams") (description "@code{BufferedStreams.jl} provides buffering for IO @@ -460,14 +484,14 @@ methods.") (base32 "1bcfylxdaizgasnmlkjjkf4dgfvy2y9ycnphw2d0z6mm9vx3n04x")))) (build-system julia-build-system) (native-inputs - `(("julia-pooledarrays" ,julia-pooledarrays))) + (list julia-pooledarrays)) (propagated-inputs - `(("julia-dataapi" ,julia-dataapi) - ("julia-json" ,julia-json) - ("julia-json3" ,julia-json3) - ("julia-missings" ,julia-missings) - ("julia-recipesbase" ,julia-recipesbase) - ("julia-structtypes" ,julia-structtypes))) + (list julia-dataapi + julia-json + julia-json3 + julia-missings + julia-recipesbase + julia-structtypes)) (home-page "https://github.com/JuliaData/CategoricalArrays.jl") (synopsis "Arrays for working with categorical data") (description "This package provides tools for working with categorical @@ -490,15 +514,11 @@ variables, both with unordered (nominal variables) and ordered categories (base32 "0if93pd3b3scg2x3gmk1cbwjk0ax1n792vy8c38y3xl7jpd5cb70")))) (build-system julia-build-system) (inputs ;required for test - `(("julia-chainrulestestutils" ,julia-chainrulestestutils) - ("julia-finitedifferences" ,julia-finitedifferences) - ("julia-nanmath" ,julia-nanmath) - ("julia-specialfunctions" ,julia-specialfunctions))) + (list julia-chainrulestestutils julia-finitedifferences julia-nanmath + julia-specialfunctions)) (propagated-inputs - `(("julia-chainrulescore" ,julia-chainrulescore) - ("julia-compat" ,julia-compat) - ("julia-reexport" ,julia-reexport) - ("julia-requires" ,julia-requires))) + (list julia-chainrulescore julia-compat julia-reexport + julia-requires)) (home-page "https://github.com/JuliaDiff/ChainRules.jl") (synopsis "Common utilities for automatic differentiation") (description "The is package provides a variety of common utilities that @@ -521,10 +541,9 @@ execute forward-, reverse-, and mixed-mode primitives.") (base32 "1866xv30h1bi7f2m993nljzf58wwmv8zlgn6ffn9j3wckch1nfpb")))) (build-system julia-build-system) (inputs ;required for tests - `(("julia-benchmarktools" ,julia-benchmarktools) - ("julia-staticarrays" ,julia-staticarrays))) + (list julia-benchmarktools julia-staticarrays)) (propagated-inputs - `(("julia-compat" ,julia-compat))) + (list julia-compat)) (home-page "https://github.com/JuliaDiff/ChainRulesCore.jl") (synopsis "Common utilities used by downstream automatic differentiation tools") (description "The package provides a light-weight dependency for defining @@ -546,9 +565,7 @@ sensitivities for functions without the need to depend on ChainRules itself.") (base32 "1vlkyp72d514gyb4k3yhjl1g7f24ncmz61j56p4sdi9f76rk9fx9")))) (build-system julia-build-system) (propagated-inputs - `(("julia-chainrulescore" ,julia-chainrulescore) - ("julia-compat" ,julia-compat) - ("julia-finitedifference" ,julia-finitedifferences))) + (list julia-chainrulescore julia-compat julia-finitedifferences)) (home-page "https://github.com/JuliaDiff/ChainRulesTestUtils.jl") (synopsis "Common utilities used by downstream automatic differentiation tools") (description "This package is designed to help in testing @@ -587,8 +604,7 @@ dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible (find-files out "\\.gz$")) #t)))))) (propagated-inputs - `(("julia-zlib-jll" ,julia-zlib-jll) - ("julia-transcodingstreams" ,julia-transcodingstreams))) + (list julia-zlib-jll julia-transcodingstreams)) (home-page "https://github.com/JuliaIO/CodecZlib.jl") (synopsis "Zlib codecs for @code{TranscodingStreams.jl}") (description "This package provides zlib codecs for @@ -610,9 +626,7 @@ dependencies, while keeping @code{ChainRulesCore.jl} as light-weight as possible (base32 "0kx3hq7rf8p5zx6ly9k5j90zijmc7yrwmy96cgkl2ibdfbnhmya3")))) (build-system julia-build-system) (propagated-inputs - `(("julia-colortypes" ,julia-colortypes) - ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) - ("julia-reexport" ,julia-reexport))) + (list julia-colortypes julia-fixedpointnumbers julia-reexport)) (home-page "https://github.com/JuliaGraphics/Colors.jl") (synopsis "Tools for dealing with color") (description "This package provides a wide array of functions for dealing @@ -636,10 +650,8 @@ color scales for graphics.") (base32 "0kpjhmqd5cj8dh8bmh9b5g6bscyp7h23hzpr2s93pnrp57q1wvhq")))) (build-system julia-build-system) (propagated-inputs - `(("julia-colors" ,julia-colors) - ("julia-colortypes" ,julia-colortypes) - ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) - ("julia-staticarrays" ,julia-staticarrays))) + (list julia-colors julia-colortypes julia-fixedpointnumbers + julia-staticarrays)) (home-page "https://github.com/JuliaGraphics/ColorSchemes.jl") (synopsis "Colorschemes, colormaps, gradients, and palettes") (description "This package provides a collection of colorschemes.") @@ -660,9 +672,9 @@ color scales for graphics.") (base32 "0n7h70caqv7yd0khjhn90iax62r73mcif8qzkwj5b4q46li1r8ih")))) (build-system julia-build-system) (propagated-inputs - `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers))) + (list julia-fixedpointnumbers)) (native-inputs - `(("julia-documenter" ,julia-documenter))) + (list julia-documenter)) (home-page "https://github.com/JuliaGraphics/ColorTypes.jl") (synopsis "Basic color types and constructor") (description "This minimalistic package serves as the foundation for @@ -686,11 +698,9 @@ with.") (base32 "02gk7f5g5wjxdasbjf8bvv1m7clksh7mw1xmygjdirjz1q0d6dwi")))) (build-system julia-build-system) (propagated-inputs - `(("julia-colortypes" ,julia-colortypes) - ("julia-specialfunctions" ,julia-specialfunctions) - ("julia-tensorcore" ,julia-tensorcore))) + (list julia-colortypes julia-specialfunctions julia-tensorcore)) (native-inputs - `(("julia-colors" ,julia-colors))) + (list julia-colors)) (home-page "https://github.com/JuliaGraphics/ColorVectorSpace.jl") (synopsis "Treat colors as n-vectors for the purposes of arithmetic") (description "This package is an add-on to @code{ColorTypes.jl} and provides @@ -734,7 +744,7 @@ focusing mostly (as of now) on enumerative combinatorics and permutations.") (base32 "0mgy90kk8ksv3l720kkk04gnhn4aqhh2dj4sp3x8yy3limngfjay")))) (build-system julia-build-system) (propagated-inputs - `(("julia-macrotools" ,julia-macrotools))) + (list julia-macrotools)) (home-page "https://github.com/rdeits/CommonSubexpressions.jl") (synopsis "@code{@@cse} macro for Julia") (description "This package provides the @code{@@cse} macro, which performs @@ -783,8 +793,7 @@ way.") (add-after 'link-depot 'fix-tests (lambda _ (substitute* "test/runtests.jl" - (("option.toml") "test/option.toml")) - #t)) + (("option.toml") "test/option.toml")))) (add-after 'link-depot 'dont-use-exproniconlite (lambda _ (substitute* '("Project.toml" @@ -793,12 +802,15 @@ way.") (("ExproniconLite") "Expronicon")) (substitute* "Project.toml" (("55351af7-c7e9-48d6-89ff-24e801d99491") - "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636")) - #t))))) + "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636")))) + ,@(if (target-64bit?) + '() + '((add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* "test/runtests.jl" + (("Int64") "Int32"))))))))) (propagated-inputs - `(("julia-crayons" ,julia-crayons) - ("julia-expronicon" ,julia-expronicon) - ("julia-orderedcollections" ,julia-orderedcollections))) + (list julia-crayons julia-expronicon julia-orderedcollections)) (home-page "https://configurations.rogerluo.dev/stable/") (synopsis "Tools for options and configurations in Julia") (description "@code{Configurations.jl} provides a macro @code{@@option} to @@ -841,11 +853,9 @@ for construction of objects.") (base32 "15zbkn32v7xlz7559s0r5a0vkwmjwsswxaqpzijly4lky4jnp33d")))) (build-system julia-build-system) (propagated-inputs - `(("julia-staticarrays" ,julia-staticarrays))) + (list julia-staticarrays)) (native-inputs - `(("julia-documenter" ,julia-documenter) - ("julia-forwarddiff" ,julia-forwarddiff) - ("julia-unitful" ,julia-unitful))) + (list julia-documenter julia-forwarddiff julia-unitful)) (home-page "https://github.com/JuliaGeometry/CoordinateTransformations.jl") (synopsis "Coordinate transformations in Julia") (description "@code{CoordinateTransformations} is a Julia package to manage @@ -935,23 +945,23 @@ dependency on it.") (string-append "test_nowarn " test))) #t))))) (propagated-inputs - `(("julia-dataapi" ,julia-dataapi) - ("julia-invertedindices" ,julia-invertedindices) - ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions) - ("julia-missings" ,julia-missings) - ("julia-pooledarrays" ,julia-pooledarrays) - ("julia-prettytables" ,julia-prettytables) - ("julia-reexport" ,julia-reexport) - ("julia-sortingalgorithms" ,julia-sortingalgorithms) - ("julia-tables" ,julia-tables) - ("julia-tabletraits" ,julia-tabletraits))) + (list julia-dataapi + julia-invertedindices + julia-iteratorinterfaceextensions + julia-missings + julia-pooledarrays + julia-prettytables + julia-reexport + julia-sortingalgorithms + julia-tables + julia-tabletraits)) (native-inputs - `(("julia-categoricalarrays" ,julia-categoricalarrays) - ("julia-combinatorics" ,julia-combinatorics) - ("julia-datastructures" ,julia-datastructures) - ("julia-datavalues" ,julia-datavalues) - ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-unitful" ,julia-unitful))) + (list julia-categoricalarrays + julia-combinatorics + julia-datastructures + julia-datavalues + julia-offsetarrays + julia-unitful)) (home-page "https://dataframes.juliadata.org/stable/") (synopsis "In-memory tabular data") (description "This package provides a set of tools for working with tabular @@ -975,9 +985,21 @@ Julia from R or Python.") (sha256 (base32 "0hdqp8ipsqdw5bqqkdvz4j6n67x80sj5azr9vzyxwjfsgkfbnk2l")))) (propagated-inputs - `(("julia-compat" ,julia-compat) - ("julia-orderedcollections" ,julia-orderedcollections))) + (list julia-compat julia-orderedcollections)) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test-i686 + (lambda _ + ;; The evaluation returns the correct value, + ;; Evaluated: "Accumulator(1 => 3, 3 => 4)" + ;; but, for some reasons, is considered as failed. + (substitute* "test/test_accumulator.jl" + (("@test sprint\\(show,Accumulator\\(1 => 3, 3 => 4\\)\\)") + "@test_broken sprint(show, Accumulator(1 => 3, 3 => 4))")))))) + '(%standard-phases)))) (home-page "https://github.com/JuliaCollections/DataStructures.jl") (synopsis "Julia module providing different data structures") (description "This package implements a variety of data structures, @@ -1033,7 +1055,7 @@ without having to take direct dependencies.") ((".*DataValue\\(method\\(f.*") "")) #t))))) (propagated-inputs - `(("julia-datavalueinterfaces" ,julia-datavalueinterfaces))) + (list julia-datavalueinterfaces)) (home-page "https://github.com/queryverse/DataValues.jl") (synopsis "Missing values for Julia") (description "This package provides the type @code{DataValue} that is used @@ -1078,7 +1100,7 @@ dictionaries where values associated with a particular key may change, (base32 "1mm43hm8hd6sgmkkpqhbqhvap7mpkjwzmz5algxi6manp580gkr5")))) (build-system julia-build-system) (propagated-inputs - `(("julia-indexing" ,julia-indexing))) + (list julia-indexing)) (home-page "https://github.com/andyferris/Dictionaries.jl") (synopsis "Alternative interface for dictionaries in Julia") (description "This package provides an alternative interface for @@ -1112,10 +1134,9 @@ dictionaries in Julia, for improved productivity and performance.") (("test dist\\(z, x") "test_nowarn dist(z, x") (("test dist\\(z, y") "test_nowarn dist(z, y"))))))) (propagated-inputs - `(("julia-statsapi" ,julia-statsapi))) + (list julia-statsapi)) (native-inputs - `(("julia-offsetarrays" ,julia-offsetarrays) - ("julia-unitful" ,julia-unitful))) + (list julia-offsetarrays julia-unitful)) (home-page "https://github.com/JuliaStats/Distances.jl") (synopsis "Julia package for evaluating distances (metrics) between vectors") (description "A Julia package for evaluating distances(metrics) between @@ -1185,10 +1206,8 @@ valuable enough at this time.") ((".*Main\\.examples_html_mathjax3_doc.*") "")) #t))))) (propagated-inputs - `(("julia-ansicoloredprinters" ,julia-ansicoloredprinters) - ("julia-docstringextensions" ,julia-docstringextensions) - ("julia-iocapture" ,julia-iocapture) - ("julia-json" ,julia-json))) + (list julia-ansicoloredprinters julia-docstringextensions + julia-iocapture julia-json)) (inputs `(("python" ,python-wrapper))) (native-inputs @@ -1231,7 +1250,7 @@ valuable enough at this time.") (inputs ;; We don't want to propagate the bootstrap version. ;; Cycle with Documenter.jl in later versions. - `(("julia-documenter" ,julia-documenter-bootstrap))) + (list julia-documenter-bootstrap)) (home-page "https://github.com/JuliaDocs/DocumenterMarkdown.jl") (synopsis "Documenter's Markdown") (description "This package enables the Markdown / MkDocs backend of @@ -1259,11 +1278,9 @@ valuable enough at this time.") ;; Cycle with Documenter.jl in later versions. `(("julia-documenter" ,julia-documenter-bootstrap))) (propagated-inputs - `(("julia-docstringextensions" ,julia-docstringextensions) - ("julia-gumbo" ,julia-gumbo) - ("julia-sass" ,julia-sass))) + (list julia-docstringextensions julia-gumbo julia-sass)) (native-inputs - `(("julia-example" ,julia-example))) + (list julia-example)) (home-page "https://github.com/JuliaDocs/DocumenterTools.jl") (synopsis "Extra tools for setting up Documenter.jl") (description "This package contains utilities for setting up documentation @@ -1284,7 +1301,7 @@ generation with @code{Documenter.jl}.") (sha256 (base32 "1w6p3yxajvclax5b9g7cr2jmbc7lvr5nk4gq0aljxdycdq1d2y3v")))) (propagated-inputs - `(("julia-staticarrays" ,julia-staticarrays))) + (list julia-staticarrays)) (build-system julia-build-system) (home-page "https://github.com/JuliaDiff/DiffResults.jl") (synopsis "In-place differentiation methods of primal values at multi-order") @@ -1306,8 +1323,7 @@ be passed to in-place differentiation methods instead of an output buffer.") (sha256 (base32 "0cwjvj4gma7924fm3yas0nf0jlnwwx4v7fi79ii3s290lkdldzfl")))) (propagated-inputs - `(("julia-nanmath" ,julia-nanmath) - ("julia-specialfunctions" ,julia-specialfunctions))) + (list julia-nanmath julia-specialfunctions)) (build-system julia-build-system) (home-page "https://github.com/JuliaDiff/DiffRules.jl") (synopsis "Primitive differentiation rules") @@ -1360,9 +1376,7 @@ stressing the robustness of differentiation tools.") ;; Seems to not play nicely with SpecialFunctions ((".*isempty.*") ""))))))) (propagated-inputs - `(("julia-calculus" ,julia-calculus) - ("julia-nanmath" ,julia-nanmath) - ("julia-specialfunctions" ,julia-specialfunctions))) + (list julia-calculus julia-nanmath julia-specialfunctions)) (home-page "https://github.com/JuliaDiff/DualNumbers.jl") (synopsis "Represent dual numbers and for perform dual algebra") (description "The @code{DualNumbers} Julia package defines the @code{Dual} @@ -1394,7 +1408,7 @@ combinations of dual numbers with predefined Julia numeric types.") ;; Seems to not play nicely with Julia-1.6. ((".*basic.jl.*") ""))))))) (propagated-inputs - `(("julia-arrayinterface" ,julia-arrayinterface))) + (list julia-arrayinterface)) (home-page "https://github.com/ChrisRackauckas/EllipsisNotation.jl") (synopsis "Elipsis notation implementation") (description "This implements the notation @code{..} for indexing arrays. @@ -1446,9 +1460,9 @@ before (or after)\".") ;; This test tries to access the Julia package registry. ((".*expand\\.jl.*") ""))))))) (propagated-inputs - `(("julia-mlstyle" ,julia-mlstyle))) + (list julia-mlstyle)) (native-inputs - `(("julia-documenter" ,julia-documenter))) + (list julia-documenter)) (home-page "https://expronicon.rogerluo.dev/dev/") (synopsis "Collective tools for metaprogramming on Julia Expr") (description "This package provides a collection of tools for @@ -1492,8 +1506,7 @@ performant tooling without requiring additional package dependencies.") (base32 "1ldxbp0kq3ip67x7sp82dz56aq4p5i0chspbgx2zgskr6jcbjj1b")))) (build-system julia-build-system) (propagated-inputs - `(("julia-ffmpeg-jll" ,julia-ffmpeg-jll) - ("julia-x264-jll" ,julia-x264-jll))) + (list julia-ffmpeg-jll julia-x264-jll)) (home-page "https://github.com/JuliaIO/FFMPEG.jl") (synopsis "Julia Package for ffmpeg") (description "This package is made to be included into packages that just @@ -1537,11 +1550,9 @@ need the ffmpeg binaries + executables, and don't want the overhead of (substitute* "test/runtests.jl" ((".*test_mimesave.*") ""))))))) (propagated-inputs - `(("julia-requires" ,julia-requires))) + (list julia-requires)) (native-inputs - `(("julia-colortypes" ,julia-colortypes) - ("julia-filepathsbase" ,julia-filepathsbase) - ("julia-http" ,julia-http))) + (list julia-colortypes julia-filepathsbase julia-http)) (home-page "https://github.com/JuliaIO/FileIO.jl") (synopsis "Main Package for IO, loading all different kind of files") (description "@code{FileIO} aims to provide a common framework for detecting @@ -1588,7 +1599,7 @@ working with filesystem paths in Julia.") (base32 "1sx96pzrgyh8k7x2w8vmyi6cazlmp7rg1n7wbl47qfzqjggka6kz")))) (build-system julia-build-system) (inputs ;required by tests - `(("julia-staticarrays" ,julia-staticarrays))) + (list julia-staticarrays)) (home-page "https://github.com/JuliaArrays/FillArrays.jl") (synopsis "Lazy matrix representation") (description "This package lazily represents matrices filled with @@ -1621,13 +1632,10 @@ following types: @code{Eye}, @code{Fill}, @code{Ones}, @code{Zeros}, (setenv "GROUP" "Core") #t))))) (propagated-inputs - `(("julia-arrayinterface" ,julia-arrayinterface) - ("julia-requires" ,julia-requires) - ("julia-staticarrays" ,julia-staticarrays))) + (list julia-arrayinterface julia-requires julia-staticarrays)) (native-inputs - `(("julia-bandedmatrices" ,julia-bandedmatrices) - ("julia-blockbandedmatrices" ,julia-blockbandedmatrices) - ("julia-safetestsets" ,julia-safetestsets))) + (list julia-bandedmatrices julia-blockbandedmatrices + julia-safetestsets)) (home-page "https://github.com/JuliaDiff/FiniteDiff.jl") (synopsis "Calculations of gradients, Jacobians, and Hessians") (description "This package is for calculating derivatives, gradients, @@ -1650,12 +1658,21 @@ types and sparsity.") (sha256 (base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test-i686 + (lambda _ + ;; Machine Precision incorrectly handled + (substitute* "test/methods.jl" + (("@test central_fdm\\(15, 5, adapt=2\\)\\(exp, 1.0\\)") + "@test_broken central_fdm(15, 5, adapt=2)(exp, 1.0)")))))) + '(%standard-phases)))) (inputs - `(("julia-benchmarktools" ,julia-benchmarktools))) + (list julia-benchmarktools)) (propagated-inputs - `(("julia-chainrulescore" ,julia-chainrulescore) - ("julia-richardson" ,julia-richardson) - ("julia-staticarrays" ,julia-staticarrays))) + (list julia-chainrulescore julia-richardson julia-staticarrays)) (home-page "https://github.com/JuliaDiff/FiniteDifferences.jl") (synopsis "Estimates derivatives with finite differences") (description "This package calculates approximate derivatives numerically @@ -1685,7 +1702,7 @@ using finite difference.") ;; A deprecation warning is not thrown (("@test_logs.*:warn" all) (string-append "# " all))) #t))))) - (propagated-inputs `(("julia-compat" ,julia-compat))) + (propagated-inputs (list julia-compat)) (home-page "https://github.com/JuliaMath/FixedPointNumbers.jl") (synopsis "Fixed point types for Julia") (description "@code{FixedPointNumbers.jl} implements fixed-point number @@ -1731,16 +1748,21 @@ c-style numerical formatting.") (sha256 (base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs")))) (build-system julia-build-system) + (arguments + ;; XXXX: Unexpected and non-deterministic failures for i686, e.g., + ;; Expression: dual_isapprox(FDNUM ^ PRIMAL, exp(PRIMAL * log(FDNUM))) + ;; ERROR: LoadError: LoadError: There was an error during testing + ;; Disable as stopgap. + `(#:tests? ,(not (target-x86-32?)))) (inputs ;required for tests - `(("julia-calculus" ,julia-calculus) - ("julia-difftests" ,julia-difftests))) + (list julia-calculus julia-difftests)) (propagated-inputs - `(("julia-commonsubexpressions" ,julia-commonsubexpressions) - ("julia-diffresults" ,julia-diffresults) - ("julia-diffrules" ,julia-diffrules) - ("julia-nanmath" ,julia-nanmath) - ("julia-specialfunctions" ,julia-specialfunctions) - ("julia-staticarrays" ,julia-staticarrays))) + (list julia-commonsubexpressions + julia-diffresults + julia-diffrules + julia-nanmath + julia-specialfunctions + julia-staticarrays)) (home-page "https://github.com/JuliaDiff/ForwardDiff.jl") (synopsis "Methods to take multidimensional derivatives") (description "This package implements methods to take derivatives, @@ -1851,7 +1873,7 @@ update step.") (substitute* "test/runtests.jl" ((".*lapack.*") ""))))))) (native-inputs - `(("julia-quaternions" ,julia-quaternions))) + (list julia-quaternions)) (home-page "https://github.com/JuliaLinearAlgebra/GenericLinearAlgebra.jl") (synopsis "Generic numerical linear algebra") (description "The purpose of this package is partly to extend linear algebra @@ -1918,21 +1940,23 @@ matrices the Schur form is often more useful.") (lambda _ (substitute* '("Project.toml" "src/GeometryBasics.jl") - ((".*EarCut.*") "")) - #t)) + ((".*EarCut.*") "")))) (add-after 'link-depot 'skip-incompatible-test (lambda _ (substitute* "test/runtests.jl" (("@testset.*MetaT and heterogeneous data.*" all) - (string-append all "return\n"))) - #t))))) + (string-append all "return\n"))))) + ,@(if (target-64bit?) + '() + '((add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* "test/runtests.jl" + (("Int64") "Int32"))))))))) (propagated-inputs - `(("julia-itertools" ,julia-itertools) - ("julia-staticarrays" ,julia-staticarrays) - ("julia-structarrays" ,julia-structarrays) - ("julia-tables" ,julia-tables))) + (list julia-itertools julia-staticarrays julia-structarrays + julia-tables)) (native-inputs - `(("julia-offsetarrays" ,julia-offsetarrays))) + (list julia-offsetarrays)) (home-page "https://github.com/JuliaGeometry/GeometryBasics.jl") (synopsis "Basic Geometry Types") (description "This package aims to offer a standard set of Geometry types, @@ -1957,7 +1981,7 @@ finite elements analysis, Geo applications, and general geometry manipulations (base32 "18zxa1w2wmrf44c5l10qbh99zjdp7h94gxlymh47cf5kj5fc4xmx")))) (build-system julia-build-system) (propagated-inputs - `(("julia-gr-jll" ,julia-gr-jll))) + (list julia-gr-jll)) (home-page "https://github.com/jheinen/GR.jl") (synopsis "Plotting for Julia based on GR") (description "This module provides a Julia interface to GR, a framework for @@ -1979,8 +2003,7 @@ visualisation applications.") (base32 "10h1s09v7qkvrjr6l678zamb1p248n8jv4rrwkf8g7d2bpfz9amn")))) (build-system julia-build-system) (propagated-inputs - `(("julia-colors" ,julia-colors) - ("julia-nanmath" ,julia-nanmath))) + (list julia-colors julia-nanmath)) (home-page "https://github.com/JuliaGraphics/Graphics.jl") (synopsis "Base graphics in Julia") (description "@code{Graphics.jl} is an abstraction layer for graphical @@ -2002,8 +2025,7 @@ operations in Julia.") (base32 "1g22dv3v7caakspv3pdahnqn937fzzsg9y87rj72hid9g8lxl1gm")))) (build-system julia-build-system) (propagated-inputs - `(("julia-abstracttrees" ,julia-abstracttrees) - ("julia-gumbo-jll" ,julia-gumbo-jll))) + (list julia-abstracttrees julia-gumbo-jll)) (home-page "https://github.com/JuliaWeb/Gumbo.jl") (synopsis "Julia wrapper around Google's gumbo C library for parsing HTML") (description "@code{Gumbo.jl} is a Julia wrapper around Google's gumbo @@ -2055,13 +2077,10 @@ library for parsing HTML.") (string-append all "return\n"))) #t))))) (propagated-inputs - `(("julia-inifile" ,julia-inifile) - ("julia-mbedtls" ,julia-mbedtls) - ("julia-uris" ,julia-uris))) + (list julia-inifile julia-mbedtls julia-uris)) ;; required for tests (inputs - `(("julia-json" ,julia-json) - ("julia-bufferedstreams" ,julia-bufferedstreams))) + (list julia-json julia-bufferedstreams)) (home-page "https://juliaweb.github.io/HTTP.jl/") (synopsis "HTTP support for Julia") (description "@code{HTTP.jl} is a Julia library for HTTP Messages, @@ -2083,7 +2102,7 @@ implementing both a client and a server.") (base32 "0jvl4xn8f8k70sn473li5q62wbiycl5qi25b5k456h3a0j1lbiml")))) (build-system julia-build-system) (propagated-inputs - `(("julia-offsetarrays" ,julia-offsetarrays))) + (list julia-offsetarrays)) (home-page "https://github.com/JuliaArrays/IdentityRanges.jl") (synopsis "Ranges that preserve indices of views") (description "@code{IdentityRanges} are Julia-language a helper type for @@ -2129,12 +2148,10 @@ conditional ifelse. It is similar to @code{Core.ifelse} but it is extendable.") (base32 "15zqxani1jjh8849s7rdps6b6prqdwv8yxx893y536vkpk7i07qd")))) (build-system julia-build-system) (propagated-inputs - `(("julia-axisarrays" ,julia-axisarrays) - ("julia-imagecore" ,julia-imagecore) - ("julia-reexport" ,julia-reexport) - ("julia-simpletraits" ,julia-simpletraits))) + (list julia-axisarrays julia-imagecore julia-reexport + julia-simpletraits)) (native-inputs - `(("julia-unitful" ,julia-unitful))) + (list julia-unitful)) (home-page "https://github.com/JuliaImages/ImageAxes.jl") (synopsis "Julia package for giving \"meaning\" to the axes of an image") (description "This small package supports the representation of images as @@ -2159,8 +2176,7 @@ such arrays easy via traits.") (arguments `(#:tests? #f)) ; Cycle with ImageMagick.jl. (propagated-inputs - `(("julia-imagecore" ,julia-imagecore) - ("julia-reexport" ,julia-reexport))) + (list julia-imagecore julia-reexport)) ;(native-inputs ; `(("julia-imagemagick" ,julia-imagemagick) ; ("julia-offsetarrays" ,julia-offsetarrays) @@ -2190,16 +2206,16 @@ dependencies.") (arguments `(#:tests? #f)) ; Cycle with ImageMagick.jl. (propagated-inputs - `(("julia-abstractffts" ,julia-abstractffts) - ("julia-colors" ,julia-colors) - ("julia-colorvectorspace" ,julia-colorvectorspace) - ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) - ("julia-graphics" ,julia-graphics) - ("julia-mappedarrays" ,julia-mappedarrays) - ("julia-mosaicviews" ,julia-mosaicviews) - ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-paddedviews" ,julia-paddedviews) - ("julia-reexport" ,julia-reexport))) + (list julia-abstractffts + julia-colors + julia-colorvectorspace + julia-fixedpointnumbers + julia-graphics + julia-mappedarrays + julia-mosaicviews + julia-offsetarrays + julia-paddedviews + julia-reexport)) ;(native-inputs ; `(("julia-aqua" ,julia-aqua) ; ("julia-colorvectorspace" ,julia-colorvectorspace) @@ -2232,10 +2248,7 @@ of packages designed to support image processing and computer vision.") (arguments `(#:tests? #f)) ; Cycle with ReferenceTests.jl. (propagated-inputs - `(("julia-crayons" ,julia-crayons) - ("julia-imagebase" ,julia-imagebase) - ("julia-imagecore" ,julia-imagecore) - ("julia-requires" ,julia-requires))) + (list julia-crayons julia-imagebase julia-imagecore julia-requires)) ;(native-inputs ; `(("julia-coordinatetransformations" ,julia-coordinatetransformations) ; ("julia-imagemagick" ,julia-imagemagick) @@ -2281,18 +2294,16 @@ be downscaled to fit into the size of your active terminal session.") (("test (B == map)" _ test) (string-append "test_nowarn " test))) #t))))) (propagated-inputs - `(("julia-fileio" ,julia-fileio) - ("julia-imagecore" ,julia-imagecore) - ("julia-imagemagick-jll" ,julia-imagemagick-jll))) + (list julia-fileio julia-imagecore julia-imagemagick-jll)) (native-inputs - `(("julia-colors" ,julia-colors) - ("julia-colorvectorspace" ,julia-colorvectorspace) - ("julia-imagemetadata" ,julia-imagemetadata) - ("julia-imageshow" ,julia-imageshow) - ("julia-imagetransformations" ,julia-imagetransformations) - ("julia-indirectarrays" ,julia-indirectarrays) - ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-zipfile" ,julia-zipfile))) + (list julia-colors + julia-colorvectorspace + julia-imagemetadata + julia-imageshow + julia-imagetransformations + julia-indirectarrays + julia-offsetarrays + julia-zipfile)) (home-page "https://github.com/JuliaIO/ImageMagick.jl") (synopsis "Thin wrapper for ImageMagick") (description "This package provides a wrapper around ImageMagick version 6. @@ -2314,14 +2325,10 @@ It was split off from @code{Images.jl} to make image I/O more modular.") (base32 "0iv154ms370xgcr56bwsjl13iwmy671cbxjl9ld5yfj85pclcwi1")))) (build-system julia-build-system) (propagated-inputs - `(("julia-axisarrays" ,julia-axisarrays) - ("julia-imageaxes" ,julia-imageaxes) - ("julia-imagecore" ,julia-imagecore) - ("julia-indirectarrays" ,julia-indirectarrays))) + (list julia-axisarrays julia-imageaxes julia-imagecore + julia-indirectarrays)) (native-inputs - `(("julia-offsetarrays" ,julia-offsetarrays) - ("julia-simpletraits" ,julia-simpletraits) - ("julia-unitful" ,julia-unitful))) + (list julia-offsetarrays julia-simpletraits julia-unitful)) (home-page "https://github.com/JuliaImages/ImageMetadata.jl") (synopsis "Julia package for images having metadata") (description "@code{ImageMetadata} is a simple package providing utilities @@ -2348,11 +2355,8 @@ information about the detector used to acquire the image.") (arguments `(#:tests? #f)) ; cycle with ImageMagick.jl. (propagated-inputs - `(("julia-fileio" ,julia-fileio) - ("julia-imagebase" ,julia-imagebase) - ("julia-imagecore" ,julia-imagecore) - ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-stackviews" ,julia-stackviews))) + (list julia-fileio julia-imagebase julia-imagecore + julia-offsetarrays julia-stackviews)) ;(native-inputs ; `(("julia-imagedistances" ,julia-imagedistances) ; ("julia-imagemagick" ,julia-imagemagick) @@ -2383,15 +2387,15 @@ inline presentation of greyscale or color images.") (arguments `(#:tests? #f)) ; Cycle with ImageMagick.jl. (propagated-inputs - `(("julia-axisalgorithms" ,julia-axisalgorithms) - ("julia-colorvectorspace" ,julia-colorvectorspace) - ("julia-coordinatetransformations" ,julia-coordinatetransformations) - ("julia-identityranges" ,julia-identityranges) - ("julia-imagecore" ,julia-imagecore) - ("julia-interpolations" ,julia-interpolations) - ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-rotations" ,julia-rotations) - ("julia-staticarrays" ,julia-staticarrays))) + (list julia-axisalgorithms + julia-colorvectorspace + julia-coordinatetransformations + julia-identityranges + julia-imagecore + julia-interpolations + julia-offsetarrays + julia-rotations + julia-staticarrays)) ;(native-inputs ; `(("julia-imagemagick" ,julia-imagemagick) ; ("julia-referencetests" ,julia-referencetests) @@ -2438,9 +2442,7 @@ out of dictionaries, tuples, etc, extending this ability beyond (base32 "0l0jq0jnr9z3k431ni82xycq7mqapgxrbrx4yyk6lycvi41ipm4s")))) (build-system julia-build-system) (native-inputs - `(("julia-colors" ,julia-colors) - ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) - ("julia-mappedarrays" ,julia-mappedarrays))) + (list julia-colors julia-fixedpointnumbers julia-mappedarrays)) (home-page "https://github.com/JuliaArrays/IndirectArrays.jl") (synopsis "Julia implementation of indexed arrays") (description "An @code{IndirectArray} is one that encodes data using a @@ -2474,9 +2476,9 @@ indexed images, sometimes called \"colormap images\" or \"paletted images.\"") ((".*infextendedtime.*") "")) #t))))) (propagated-inputs - `(("julia-requires" ,julia-requires))) + (list julia-requires)) (native-inputs - `(("julia-compat" ,julia-compat))) + (list julia-compat)) (home-page "https://docs.juliahub.com/Infinity/") (synopsis "Representation of infinity in Julia") (description "This package provides representations for infinity and @@ -2517,19 +2519,23 @@ interfaces with @file{.ini} files.") (sha256 (base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc")))) (build-system julia-build-system) + (arguments + `(#:parallel-tests? #f + ;; XXXX: Unexpected failures for i686, e.g., + ;; Got exception outside of a @test + ;; OverflowError: 96908232 * 106943408 overflowed for type Int32 + ;; Disable as stopgap. + #:tests? ,(not (target-x86-32?)))) (propagated-inputs - `(("julia-axisalgorithms" ,julia-axisalgorithms) - ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-ratios" ,julia-ratios) - ("julia-requires" ,julia-requires) - ("julia-staticarrays" ,julia-staticarrays) - ("julia-woodburymatrices" ,julia-woodburymatrices))) + (list julia-axisalgorithms + julia-offsetarrays + julia-ratios + julia-requires + julia-staticarrays + julia-woodburymatrices)) (native-inputs - `(("julia-dualnumbers" ,julia-dualnumbers) - ("julia-forwarddiff" ,julia-forwarddiff) - ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-unitful" ,julia-unitful) - ("julia-zygote" ,julia-zygote))) + (list julia-dualnumbers julia-forwarddiff julia-offsetarrays + julia-unitful julia-zygote)) (home-page "https://github.com/JuliaMath/Interpolations.jl") (synopsis "Continuous interpolation of discrete datasets") (description "This package implements a variety of interpolation schemes for @@ -2551,10 +2557,24 @@ and exceptional performance.") (sha256 (base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test-i686 + (lambda _ + (substitute* "test/runtests.jl" + ;; For some reason, the output is correct but the test + ;; is considered as failed: + ;; Expression: duration(ClosedInterval(A, B)) ≡ 60 + ;; Evaluated: 60 ≡ 60 + (("@test duration\\(ClosedInterval") + "@test_broken duration(ClosedInterval")))))) + '(%standard-phases)))) (propagated-inputs - `(("julia-ellipsisnotation" ,julia-ellipsisnotation))) + (list julia-ellipsisnotation)) (native-inputs - `(("julia-offsetarrays" ,julia-offsetarrays))) + (list julia-offsetarrays)) (home-page "https://github.com/JuliaMath/IntervalSets.jl") (synopsis "Interval Sets for Julia") (description "This package is intended to implement a \"minimal\" foundation @@ -2578,7 +2598,7 @@ unambiguously define the @code{..} and @code{±} operators.") (base32 "1179z20yxnkyziip7gn26wr1g3k3ssl1ci7pig3khc900f62di46")))) (build-system julia-build-system) (native-inputs - `(("julia-offsetarrays" ,julia-offsetarrays))) + (list julia-offsetarrays)) (home-page "https://github.com/mbauman/InvertedIndices.jl") (synopsis "Index type that allows for inverted selections") (description "This package just exports one type: the @code{InvertedIndex}, @@ -2622,9 +2642,9 @@ as a string together with the return value.") (base32 "11334fcg2slpwcj0raxf457brhf7pxglgxc6cy8q58ggrpxqfqql")))) (build-system julia-build-system) (propagated-inputs - `(("julia-macrotools" ,julia-macrotools))) + (list julia-macrotools)) (native-inputs - `(("julia-documenter" ,julia-documenter))) + (list julia-documenter)) (home-page "https://github.com/FluxML/IRTools.jl") (synopsis "Simple and flexible IR format") (description "This package provides a simple and flexible IR format, @@ -2707,10 +2727,8 @@ extensions to the iterator interface.") (base32 "1f9k613kbknmp4fgjxvjaw4d5sfbx8a5hmcszmp1w9rqfqngjx9m")))) (build-system julia-build-system) (propagated-inputs - `(("julia-datastructures" ,julia-datastructures) - ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) - ("julia-parsers" ,julia-parsers) - ("julia-offsetarrays" ,julia-offsetarrays))) + (list julia-datastructures julia-fixedpointnumbers julia-parsers + julia-offsetarrays)) (home-page "https://github.com/JuliaIO/JSON.jl") (synopsis "JSON parsing and printing library for Julia") (description "@code{JSON.jl} is a pure Julia module which supports parsing @@ -2732,8 +2750,7 @@ and printing JSON documents.") (base32 "11z5maz7v50wd99id8z7838higza0cllh2amkdkrlskbri3v2f17")))) (build-system julia-build-system) (propagated-inputs - `(("julia-parsers" ,julia-parsers) - ("julia-structtypes" ,julia-structtypes))) + (list julia-parsers julia-structtypes)) (home-page "https://github.com/quinnj/JSON3.jl") (synopsis "JSON package for Julia") (description "This package provides another JSON package for Julia, with a @@ -2755,7 +2772,7 @@ focus on speed and slick struct mapping.") (base32 "117z27krcf8fydgp6mb0pgn75r4gng9qs7v90qb4bqzsry3faadp")))) (build-system julia-build-system) (native-inputs - `(("julia-documenter" ,julia-documenter))) + (list julia-documenter)) (home-page "https://github.com/stevengj/LaTeXStrings.jl") (synopsis "Input and display of LaTeX equation strings") (description "This is a small package to make it easier to type LaTeX @@ -2776,14 +2793,20 @@ equations in string literals in the Julia language.") (sha256 (base32 "17rhlrmgfvdw8w62pg32ikr9j4xy2ylr7mx7ar0hnpzryv929rp5")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-64bit?) + '(%standard-phases) + '((modify-phases %standard-phases + (add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* "test/multests.jl" + (("Int64") "Int32"))))))))) (propagated-inputs - `(("julia-arraylayouts" ,julia-arraylayouts) - ("julia-fillarrays" ,julia-fillarrays) - ("julia-macrotools" ,julia-macrotools) - ("julia-matrixfactorizations" ,julia-matrixfactorizations) - ("julia-staticarrays" ,julia-staticarrays))) + (list julia-arraylayouts julia-fillarrays julia-macrotools + julia-matrixfactorizations julia-staticarrays)) (native-inputs - `(("julia-tracker" ,julia-tracker))) + (list julia-tracker)) (home-page "https://github.com/JuliaArrays/LazyArrays.jl") (synopsis "Lazy arrays and linear algebra") (description "This package supports lazy analogues of array operations like @@ -2806,9 +2829,9 @@ implementation of matrix-free methods for iterative solvers.") (base32 "0rvms3mmq8a1viqlyzdgs2ccddcy6j0c677dlb8m5nk6hkiwr16n")))) (build-system julia-build-system) (propagated-inputs - `(("julia-docstringextensions" ,julia-docstringextensions))) + (list julia-docstringextensions)) (native-inputs - `(("julia-offsetarrays" ,julia-offsetarrays))) + (list julia-offsetarrays)) (home-page "https://github.com/JuliaStats/LogExpFunctions.jl") (synopsis "Special functions based on @code{log} and @code{exp}") (description "Various special functions based on log and exp moved from @@ -2852,12 +2875,19 @@ that let you do deep transformations of code.") (sha256 (base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-64bit?) + '(%standard-phases) + '((modify-phases %standard-phases + (add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* "test/runtests.jl" + (("Int64") "Int32"))))))))) (propagated-inputs - `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers))) + (list julia-fixedpointnumbers)) (native-inputs - `(("julia-colortypes" ,julia-colortypes) - ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) - ("julia-offsetarrays" ,julia-offsetarrays))) + (list julia-colortypes julia-fixedpointnumbers julia-offsetarrays)) (home-page "https://github.com/JuliaArrays/MappedArrays.jl") (synopsis "Lazy in-place transformations of arrays") (description "This package implements \"lazy\" in-place elementwise @@ -2894,7 +2924,7 @@ comes from the fact that @code{M == map(f, A)}.") (("test String") "test_nowarn String")) #t))))) (propagated-inputs - `(("julia-arraylayouts" ,julia-arraylayouts))) + (list julia-arraylayouts)) (home-page "https://github.com/JuliaMatrices/MatrixFactorizations.jl") (synopsis "Julia package to contain non-standard matrix factorizations") (description "A Julia package to contain non-standard matrix factorizations. @@ -2926,7 +2956,7 @@ may include other factorizations such as the LQ factorization.") (substitute* "test/runtests.jl" (("testhost =") "return #")) #t))))) - (propagated-inputs `(("julia-mbedtls-jll" ,julia-mbedtls-jll))) + (propagated-inputs (list julia-mbedtls-jll)) (home-page "https://github.com/JuliaLang/MbedTLS.jl") (synopsis "Apache's mbed TLS library wrapper") (description "@code{MbedTLS.jl} provides a wrapper around the @code{mbed @@ -2948,13 +2978,9 @@ TLS} and cryptography C library for Julia.") (base32 "05p3f0gr4sv4maq8cix5fi8ldq0zagswqsd43xn6fhy046f936mz")))) (build-system julia-build-system) (propagated-inputs - `(("julia-calculus" ,julia-calculus) - ("julia-recipesbase" ,julia-recipesbase) - ("julia-requires" ,julia-requires))) + (list julia-calculus julia-recipesbase julia-requires)) (native-inputs - `(("julia-quadgk" ,julia-quadgk) - ("julia-specialfunctions" ,julia-specialfunctions) - ("julia-unitful" ,julia-unitful))) + (list julia-quadgk julia-specialfunctions julia-unitful)) (home-page "https://juliaphysics.github.io/Measurements.jl/stable/") (synopsis "Error propagation calculator and library") (description "@code{Measurements.jl} is an error propagation calculator and @@ -3005,7 +3031,7 @@ resolving them into absolute units.") '(#:julia-package-name "Media" #:julia-package-uuid "e89f7d12-3494-54d1-8411-f7d8b9ae1f27")) (propagated-inputs - `(("julia-macrotools" ,julia-macrotools))) + (list julia-macrotools)) (home-page "https://github.com/JunoLab/Media.jl") (synopsis "Unified measure and coordinates types") (description "This package provides a display system which enables the @@ -3028,7 +3054,7 @@ displayed where.") (base32 "0k9jqgp285qhckldvvsmfk6s69dcr8s74m2fijgm2vxjj2gqjs1n")))) (build-system julia-build-system) (native-inputs - `(("julia-jive" ,julia-jive))) + (list julia-jive)) (home-page "https://github.com/wookay/Millboard.jl") (synopsis "Displaying data in tables for Julia") (description @@ -3051,7 +3077,7 @@ format to arrange into rows and columns of cells.") (base32 "1k481rm5lahmjyh34j177d4n10svgr0wm7ps5m3ar3xx6nr26ad5")))) (build-system julia-build-system) (propagated-inputs - `(("julia-dataapi" ,julia-dataapi))) + (list julia-dataapi)) (home-page "https://github.com/JuliaData/Missings.jl") (synopsis "Additional missing value support for Julia") (description "This package provides additional functionality for working @@ -3073,7 +3099,7 @@ with @code{missing} values in Julia.") (base32 "0h1cd7cr4c4cnpqyj3180113gdbvcc047lqphp8a8gq5smp3c059")))) (build-system julia-build-system) (native-inputs - `(("julia-datastructures" ,julia-datastructures))) + (list julia-datastructures)) (home-page "https://thautwarm.github.io/MLStyle.jl/latest/") (synopsis "Julia functional programming infrastructures") (description "This package provides consistent and extensible functional @@ -3095,8 +3121,7 @@ programming infrastructures, and metaprogramming facilities.") (base32 "1cg2is83bjmrchmmxcgx57k8c9b9vlamrw38v4fdhbb6d4six5cg")))) (build-system julia-build-system) (propagated-inputs - `(("julia-compat" ,julia-compat) - ("julia-exprtools" ,julia-exprtools))) + (list julia-compat julia-exprtools)) (home-page "https://github.com/invenia/Mocking.jl") (synopsis "Overload Julia function calls") (description "The purpose of this package is to allow Julia function calls @@ -3120,9 +3145,7 @@ to be temporarily overloaded for the purpose of testing.") (arguments `(#:tests? #f)) ; Cycle with ImageCore.jl (propagated-inputs - `(("julia-mappedarrays" ,julia-mappedarrays) - ("julia-paddedviews" ,julia-paddedviews) - ("julia-stackviews" ,julia-stackviews))) + (list julia-mappedarrays julia-paddedviews julia-stackviews)) ;(native-inputs ; `(("julia-colorvectorspace" ,julia-colorvectorspace) ; ("julia-imagecore" ,julia-imagecore))) @@ -3169,8 +3192,24 @@ Julia, with type-driven, overloadable packing/unpacking functionality.") (sha256 (base32 "1isyj8h4nx96cr6892d154v8pw1nhr7mjyz5bd6ffr2mkzb2bq4f")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test-i686 + (lambda _ + (substitute* "test/utilities.jl" + ;; Non-deterministic returned value, e.g., + ;; Expression: n == @allocated(f()) + ;; Evaluated: 240 == 120 + ;; and for some other values: + ;; Got correct result, please change to @test + ;; so @test_broken is not enough. + (("@test n == @allocated f\\(\\)") + " ")))))) + '(%standard-phases)))) (propagated-inputs - `(("julia-offsetarrays" ,julia-offsetarrays))) + (list julia-offsetarrays)) (home-page "https://github.com/jump-dev/MutableArithmetics.jl") (synopsis "Interface for arithmetics on mutable types in Julia") (description "MutableArithmetics is a Julia package which allows: @@ -3216,12 +3255,9 @@ still being completely generic (base32 "0n8qh5a2ghjx1j70zxn0hmh8gzpa46kmjg8di879y9974bfk0f98")))) (build-system julia-build-system) (propagated-inputs - `(("julia-diffresults" ,julia-diffresults) - ("julia-finitediff" ,julia-finitediff) - ("julia-forwarddiff" ,julia-forwarddiff))) + (list julia-diffresults julia-finitediff julia-forwarddiff)) (native-inputs - `(("julia-optimtestproblems" ,julia-optimtestproblems) - ("julia-recursivearraytools" ,julia-recursivearraytools))) + (list julia-optimtestproblems julia-recursivearraytools)) (home-page "https://github.com/JuliaNLSolvers/NLSolversBase.jl") (synopsis "Optimization and equation solver software in JuliaNLSolvers") (description "This package aims at establishing common ground for Optim.jl, @@ -3254,13 +3290,9 @@ interface to interact with these types.") (("&& CUDA\\.functional\\(\\)") "")) (setenv "NNLIB_TEST_CUDA" "false")))))) (propagated-inputs - `(("julia-adapt" ,julia-adapt) - ("julia-chainrulescore" ,julia-chainrulescore) - ("julia-requires" ,julia-requires))) + (list julia-adapt julia-chainrulescore julia-requires)) (native-inputs - `(("julia-chainrulestestutils" ,julia-chainrulestestutils) - ("julia-stablerngs" ,julia-stablerngs) - ("julia-zygote" ,julia-zygote))) + (list julia-chainrulestestutils julia-stablerngs julia-zygote)) (home-page "https://github.com/FluxML/NNlib.jl") (synopsis "Neural Network primitives with multiple backends") (description "This package will provide a library of functions useful for @@ -3328,7 +3360,7 @@ which they were added to the collection.") (base32 "0j5a8ar8yc0j9h87gwfyrcqm23wpyv5yv5gn8vzilpg4vr0fiasc")))) (build-system julia-build-system) (propagated-inputs - `(("julia-adapt" ,julia-adapt))) + (list julia-adapt)) ;; CatIndices depends on OffsetArrays, introducing a recursive dependency (arguments '(#:tests? #f)) (home-page "https://juliaarrays.github.io/OffsetArrays.jl/stable/") @@ -3353,9 +3385,9 @@ languages like Fortran.") (base32 "0ran2vj6ahlzib0g77y7g0jhavy3k9s2mqq23ybpgp9z677wf26h")))) (build-system julia-build-system) (propagated-inputs - `(("julia-offsetarrays" ,julia-offsetarrays))) + (list julia-offsetarrays)) (native-inputs - `(("julia-documenter" ,julia-documenter))) + (list julia-documenter)) (home-page "https://github.com/JuliaArrays/PaddedViews.jl") (synopsis "Add virtual padding to the edges of an array") (description "@code{PaddedViews} provides a simple wrapper type, @@ -3380,8 +3412,7 @@ Multiple arrays may be \"promoted\" to have common indices using the (base32 "0b8lawi7kcws4axfsdf023gyxca15irl648ciyi1kw3wghz3pfi2")))) (build-system julia-build-system) (propagated-inputs - `(("julia-orderedcollections" ,julia-orderedcollections) - ("julia-unpack" ,julia-unpack))) + (list julia-orderedcollections julia-unpack)) (home-page "https://github.com/mauro3/Parameters.jl") (synopsis "Numerical-model parameter helpers") (description "This package contains types with default field values, keyword @@ -3449,8 +3480,7 @@ actual computation.") (base32 "1fd27w9z1vhz0d1bzrs5vcavpb5r5jviyh27d9c4ka37phz4xvmh")))) (build-system julia-build-system) (propagated-inputs - `(("julia-plotutils" ,julia-plotutils) - ("julia-requires" ,julia-requires))) + (list julia-plotutils julia-requires)) (home-page "https://github.com/JuliaPlots/PlotThemes.jl") (synopsis "Themes for the Julia plotting package Plots.jl") (description @@ -3472,11 +3502,9 @@ actual computation.") (base32 "12aw5gkkcfhpczv2w510k65w1j0hjnh825ihimi223v8plsi5105")))) (build-system julia-build-system) (propagated-inputs - `(("julia-colors" ,julia-colors) - ("julia-colorschemes" ,julia-colorschemes) - ("julia-reexport" ,julia-reexport))) + (list julia-colors julia-colorschemes julia-reexport)) (native-inputs - `(("julia-stablerngs" ,julia-stablerngs))) + (list julia-stablerngs)) (home-page "https://github.com/JuliaPlots/PlotUtils.jl") (synopsis "Helper algorithms for building plotting components") (description "This package contains generic helper algorithms for building @@ -3498,7 +3526,7 @@ plotting components.") (base32 "0qdwvf1p5z6z0q4s4hn85ysd8wq47zy6hlzddc5ijvhk86ccqlrr")))) (build-system julia-build-system) (propagated-inputs - `(("julia-dataapi" ,julia-dataapi))) + (list julia-dataapi)) (home-page "https://github.com/JuliaData/PooledArrays.jl") (synopsis "Pooled representation of arrays in Julia") (description "This package provides a pooled representation of arrays for @@ -3520,8 +3548,7 @@ purposes of compression when there are few unique elements.") (base32 "1wxy6ak7f3hvibcgc8q88cgkf9zvi649mmjy1zlkx1qk80hgvz23")))) (build-system julia-build-system) (native-inputs - `(("julia-forwarddiff" ,julia-forwarddiff) - ("julia-reversediff" ,julia-reversediff))) + (list julia-forwarddiff julia-reversediff)) (home-page "https://github.com/timholy/PositiveFactorizations.jl") (synopsis "Positive-definite \"approximations\" to matrices") (description "@code{PositiveFactorizations} is a package for computing a @@ -3580,10 +3607,7 @@ everything from run time algorithm choice to code generation at compile time.") ((".*colors\\.jl.*") "")) #t))))) (propagated-inputs - `(("julia-crayons" ,julia-crayons) - ("julia-formatting" ,julia-formatting) - ("julia-reexport" ,julia-reexport) - ("julia-tables" ,julia-tables))) + (list julia-crayons julia-formatting julia-reexport julia-tables)) (home-page "https://github.com/ronisbr/PrettyTables.jl") (synopsis "Print data in formatted tables") (description "This package has the purpose to print data in matrices in a @@ -3650,12 +3674,11 @@ human-readable format.") (setenv "JULIA_PKGEVAL" "true") #t))))) (propagated-inputs - `(("julia-macrotools" ,julia-macrotools) - ("julia-versionparsing" ,julia-versionparsing))) + (list julia-macrotools julia-versionparsing)) (inputs - `(("python" ,python))) + (list python)) (native-inputs - `(("python-numpy" ,python-numpy))) + (list python-numpy)) (home-page "https://github.com/JuliaPy/PyCall.jl") (synopsis "Call Python functions from the Julia language") (description "This package provides the ability to directly call and fully @@ -3680,12 +3703,12 @@ share large data structures between Julia and Python without copying them.") (base32 "007zs0imfgs69f30pp2a3rc93kl0qiq7qjx6ig35z4wzkmps4skd")))) (build-system julia-build-system) (propagated-inputs - `(("julia-colors" ,julia-colors) - ("julia-latexstrings" ,julia-latexstrings) - ("julia-pycall" ,julia-pycall) - ("julia-versionparsing" ,julia-versionparsing) - ;; python-matplotlib is expected to be available at runtime. - ("python-matplotlib" ,python-matplotlib))) + (list julia-colors + julia-latexstrings + julia-pycall + julia-versionparsing + ;; python-matplotlib is expected to be available at runtime. + python-matplotlib)) (home-page "https://github.com/JuliaPy/PyPlot.jl") (synopsis "Plotting for Julia based on matplotlib.pyplot") (description "This package provides a Julia interface to the Matplotlib @@ -3709,7 +3732,7 @@ Julia with little or no overhead (arrays are passed without making a copy).") (base32 "1hy0629yai6xflgxaflk9764lzr1lzhlghimxk1aqi212q9c6n33")))) (build-system julia-build-system) (propagated-inputs - `(("julia-datastructures" ,julia-datastructures))) + (list julia-datastructures)) (home-page "https://github.com/JuliaMath/QuadGK.jl") (synopsis "Adaptive 1d numerical Gauss–Kronrod integration") (description "This package provides support for one-dimensional numerical @@ -3744,11 +3767,11 @@ arbitrary normed vector spaces (e.g. matrix-valued integrands).") (("libquadmath.so.0" lib) (string-append gcclib "/lib/" lib))) #t)))))) (propagated-inputs - `(("julia-requires" ,julia-requires))) + (list julia-requires)) (inputs `(("gcc:lib" ,gcc "lib"))) (native-inputs - `(("julia-specialfunctions" ,julia-specialfunctions))) + (list julia-specialfunctions)) (home-page "https://github.com/JuliaMath/Quadmath.jl") (synopsis "Float128 and libquadmath for the Julia language") (description "This is a Julia interface to @code{libquadmath}, providing a @@ -3771,7 +3794,7 @@ format.") (base32 "1zhynyvchc50hywws2jznpkwydr3njh8cv84d2ylyabhcwwmil9s")))) (build-system julia-build-system) (propagated-inputs - `(("julia-dualnumbers" ,julia-dualnumbers))) + (list julia-dualnumbers)) (home-page "https://github.com/JuliaGeometry/Quaternions.jl") (synopsis "Quaternion and dual-quaternion functionality") (description "Quaternions are best known for their suitability as @@ -3794,9 +3817,8 @@ extension of complex numbers.") (base32 "06zm4cbn3x49lbpgshhdfvvmgz066qkc8q0d57igm5p8bcp6js22")))) (build-system julia-build-system) (propagated-inputs - `(("julia-datastructures" ,julia-datastructures) - ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions) - ("julia-tableshowutils" ,julia-tableshowutils))) + (list julia-datastructures julia-iteratorinterfaceextensions + julia-tableshowutils)) (home-page "https://github.com/queryverse/QueryOperators.jl") (synopsis "Query operators for Julia") (description "This package contains the underlying query operators that are @@ -3885,9 +3907,7 @@ more complex visualizations.") (arguments `(#:tests? #f)) ; Cycle with Plots.jl. (propagated-inputs - `(("julia-nanmath" ,julia-nanmath) - ("julia-plotutils" ,julia-plotutils) - ("julia-recipesbase" ,julia-recipesbase))) + (list julia-nanmath julia-plotutils julia-recipesbase)) (home-page "http://juliaplots.org/RecipesPipeline.jl/dev/") (synopsis "Utilities for processing recipes") (description "This package was factored out of @code{Plots.jl} to allow any @@ -3915,13 +3935,13 @@ recipes to full specifications for a plot.") (arguments `(#:tests? #f)) ; Cycle with OrdinaryDiffEq.jl. (propagated-inputs - `(("julia-arrayinterface" ,julia-arrayinterface) - ("julia-chainrulescore" ,julia-chainrulescore) - ("julia-docstringextensions" ,julia-docstringextensions) - ("julia-recipesbase" ,julia-recipesbase) - ("julia-requires" ,julia-requires) - ("julia-staticarrays" ,julia-staticarrays) - ("julia-zygoterules" ,julia-zygoterules))) + (list julia-arrayinterface + julia-chainrulescore + julia-docstringextensions + julia-recipesbase + julia-requires + julia-staticarrays + julia-zygoterules)) ;(native-inputs ; `(("julia-forwarddiff" ,julia-forwarddiff) ; ("julia-nlsolve" ,julia-nlsolve) @@ -3970,11 +3990,8 @@ recursive arrays like arrays of arrays.") (arguments `(#:tests? #f)) ; Cycle with ImageCore.jl through ImageMagick.jl. (propagated-inputs - `(("julia-deepdiffs" ,julia-deepdiffs) - ("julia-distances" ,julia-distances) - ("julia-fileio" ,julia-fileio) - ("julia-imagecore" ,julia-imagecore) - ("julia-imageinterminal" ,julia-imageinterminal))) + (list julia-deepdiffs julia-distances julia-fileio julia-imagecore + julia-imageinterminal)) ;(native-inputs ; `(("julia-csvfiles" ,julia-csvfiles) ; ("julia-dataframes" ,julia-dataframes) @@ -4005,10 +4022,12 @@ package can help create and update if need be.") (sha256 (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01")))) (build-system julia-build-system) + (arguments + `(#:parallel-tests? #f)) (inputs ;required for test - `(("julia-example" ,julia-example))) + (list julia-example)) (propagated-inputs - `(("julia-colors" ,julia-colors))) + (list julia-colors)) (home-page "https://github.com/JuliaPackaging/Requires.jl/") (synopsis "Faster package loader") (description "This package make loading packages faster, maybe. It @@ -4031,18 +4050,23 @@ can be avoided.") (sha256 (base32 "1wrr6sqj2xl9grkvdp88rw3manxy9vbx28zq2wssya5ns1xabsnl")))) (build-system julia-build-system) + (arguments + ;; XXXX: Test suite failing for i686, e.g., + ;; Expression: hash(tr_float, hash(1)) === hash(v_float, hash(1)) + ;; MethodError: no method matching decompose(::ReverseDiff.TrackedReal{Float64, Float64, Nothing}) + ;; Disable as stopgap. + `(#:tests? ,(not (target-x86-32?)))) (propagated-inputs - `(("julia-diffresults" ,julia-diffresults) - ("julia-diffrules" ,julia-diffrules) - ("julia-forwarddiff" ,julia-forwarddiff) - ("julia-functionwrappers" ,julia-functionwrappers) - ("julia-macrotools" ,julia-macrotools) - ("julia-nanmath" ,julia-nanmath) - ("julia-specialfunctions" ,julia-specialfunctions) - ("julia-staticarrays" ,julia-staticarrays))) + (list julia-diffresults + julia-diffrules + julia-forwarddiff + julia-functionwrappers + julia-macrotools + julia-nanmath + julia-specialfunctions + julia-staticarrays)) (native-inputs - `(("julia-difftests" ,julia-difftests) - ("julia-fillarrays" ,julia-fillarrays))) + (list julia-difftests julia-fillarrays)) (home-page "https://github.com/JuliaDiff/ReverseDiff.jl") (synopsis "Reverse Mode Automatic Differentiation for Julia") (description "@code{ReverseDiff.jl} is a fast and compile-able tape-based @@ -4096,11 +4120,9 @@ other power series in @code{h}.") (base32 "01wwqbdmj61yiz7rkmams4xg7gb9hbmg325173846ky4b9x1wb19")))) (build-system julia-build-system) (propagated-inputs - `(("julia-staticarrays" ,julia-staticarrays))) + (list julia-staticarrays)) (native-inputs - `(("julia-benchmarktools" ,julia-benchmarktools) - ("julia-forwarddiff" ,julia-forwarddiff) - ("julia-unitful" ,julia-unitful))) + (list julia-benchmarktools julia-forwarddiff julia-unitful)) (home-page "https://github.com/JuliaGeometry/Rotations.jl") (synopsis "Julia implementations for different rotation parameterisations") (description "This package implements various 3D rotation parameterizations @@ -4131,7 +4153,7 @@ through matrix-vector multiplication.") `(#:julia-package-name "SafeTestsets" #:julia-package-uuid "1bc83da4-3b8d-516f-aca4-4fe02f6d838f")) (native-inputs - `(("julia-staticarrays" ,julia-staticarrays))) + (list julia-staticarrays)) (home-page "https://github.com/YingboMa/SafeTestsets.jl") (synopsis "Julia's testset in a module") (description "This package contains the testset from Julia, packaged into @@ -4153,7 +4175,7 @@ a loadable module.") (base32 "0y7kkkj717h5cj659ssry89i5r64symr6pvhr6vv4qmaxrnjxj92")))) (build-system julia-build-system) (propagated-inputs - `(("julia-libsass-jll" ,julia-libsass-jll))) + (list julia-libsass-jll)) (home-page "https://github.com/piever/Sass.jl") (synopsis "Compile scss and sass file to css") (description "This package provides a simple Julian API to use the @@ -4224,7 +4246,7 @@ in @code{Gadfly}, @code{Plots} and @code{Makie} to label axes and keys.") (base32 "1qvmkqcvhc2nilvkk36szccxdlcv9ls2i0ksxgl2yfjr3b3qlr05")))) (build-system julia-build-system) (propagated-inputs - `(("julia-macrotools" ,julia-macrotools))) + (list julia-macrotools)) (home-page "https://github.com/mauro3/SimpleTraits.jl") (synopsis "Simple Traits for Julia") (description "This package provides a macro-based implementation of traits. @@ -4274,7 +4296,7 @@ beginners.") (arguments `(#:tests? #f)) ; cycle with StatsBase.jl (propagated-inputs - `(("julia-datastructures" ,julia-datastructures))) + (list julia-datastructures)) ;(native-inputs ; `(("julia-statsbase" ,julia-statsbase))) (home-page "https://github.com/JuliaCollections/SortingAlgorithms.jl") @@ -4299,11 +4321,10 @@ timsort and radixsort.") (base32 "0nfpnglx7zl9g20w2mgfkg17hcw9ri0shaq2rwplj0ij5pwz8yf0")))) (build-system julia-build-system) (inputs - `(("julia-chainrulestestutils" ,julia-chainrulestestutils))) + (list julia-chainrulestestutils)) (propagated-inputs - `(("julia-chainrulescore" ,julia-chainrulescore) - ("julia-logexpfunctions" ,julia-logexpfunctions) - ("julia-openspecfun-jll" ,julia-openspecfun-jll))) + (list julia-chainrulescore julia-logexpfunctions + julia-openspecfun-jll)) (home-page "https://github.com/JuliaMath/SpecialFunctions.jl") (synopsis "Special mathematical functions") (description "This package provides special mathematical functions, @@ -4327,8 +4348,7 @@ polygamma functions.") (base32 "1qzaqvk57b0s5krzn8bxkzmr5kz6hi9dm3jbf2sl7z4vznsgbn9x")))) (build-system julia-build-system) (propagated-inputs - `(("julia-dictionaries" ,julia-dictionaries) - ("julia-indexing" ,julia-indexing))) + (list julia-dictionaries julia-indexing)) (home-page "https://github.com/JuliaData/SplitApplyCombine.jl") (synopsis "Split-apply-combine strategies for Julia") (description "@code{SplitApplyCombine.jl} provides high-level, generic tools @@ -4384,10 +4404,9 @@ some performance improvements).") ((".*doctest.*") "")) #t))))) (propagated-inputs - `(("julia-offsetarrays" ,julia-offsetarrays))) + (list julia-offsetarrays)) (native-inputs - `(("julia-aqua" ,julia-aqua) - ("julia-documenter" ,julia-documenter))) + (list julia-aqua julia-documenter)) (home-page "https://github.com/JuliaArrays/StackViews.jl") (synopsis "No more catcat") (description "StackViews provides only one array type: @code{StackView}. @@ -4415,9 +4434,9 @@ There are multiple ways to understand @code{StackView}: (base32 "19k7h47zhz3zz28i0l4b3cc0r07pzp8kf35z0yammpy361b644l2")))) (build-system julia-build-system) (propagated-inputs - `(("julia-ifelse" ,julia-ifelse))) + (list julia-ifelse)) (native-inputs - `(("julia-aqua" ,julia-aqua))) + (list julia-aqua)) (home-page "https://github.com/SciML/Static.jl") (synopsis "Static types useful for dispatch and generated functions") (description "Static.jl defines a limited set of statically parameterized @@ -4439,7 +4458,7 @@ types and a common interface that is shared between them.") (base32 "041mijzgzm8r61a3gwspr2wcxjikqksvj2rbnl4gmcy41alqmx79")))) (build-system julia-build-system) (inputs - `(("julia-benchmarktools" ,julia-benchmarktools))) + (list julia-benchmarktools)) (home-page "https://github.com/JuliaArrays/StaticArrays.jl") (synopsis "Statically sized arrays") (description "This package provides a framework for implementing @@ -4487,13 +4506,10 @@ dependency on it.") (base32 "02y4pm5yvg713a2pn970bbcfkrn2h133rxbxk1da18svhqw3czhi")))) (build-system julia-build-system) (propagated-inputs - `(("julia-dataapi" ,julia-dataapi) - ("julia-datastructures" ,julia-datastructures) - ("julia-missings" ,julia-missings) - ("julia-sortingalgorithms" ,julia-sortingalgorithms) - ("julia-statsapi" ,julia-statsapi))) + (list julia-dataapi julia-datastructures julia-missings + julia-sortingalgorithms julia-statsapi)) (native-inputs - `(("julia-stablerngs" ,julia-stablerngs))) + (list julia-stablerngs)) (home-page "https://github.com/JuliaStats/StatsBase.jl") (synopsis "Basic statistics for Julia") (description "StatsBase.jl is a Julia package that provides basic support @@ -4517,7 +4533,7 @@ ranking, covariances, sampling, and empirical density estimation.") (base32 "0n5707wplbibzhhv1xmshvc025d7xk6mnikclc3hvq5cdc0gy9f7")))) (build-system julia-build-system) (propagated-inputs - `(("julia-distances" ,julia-distances))) + (list julia-distances)) (home-page "https://github.com/matthieugomez/StringDistances.jl") (synopsis "String Distances in Julia") (description "This package provides string distances in Julia. Distances @@ -4540,16 +4556,21 @@ applied to any distance.") (sha256 (base32 "0rjcpyjwzg70n87q5r9c5i1qzigavncslxssm3rk5a3y549py56v")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-64bit?) + '(%standard-phases) + '((modify-phases %standard-phases + (add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* '("src/utils.jl" + "test/runtests.jl") + (("Int64") "Int32"))))))))) (propagated-inputs - `(("julia-dataapi" ,julia-dataapi) - ("julia-staticarrays" ,julia-staticarrays) - ("julia-tables" ,julia-tables))) + (list julia-dataapi julia-staticarrays julia-tables)) (native-inputs - `(("julia-documenter" ,julia-documenter) - ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-pooledarrays" ,julia-pooledarrays) - ("julia-typedtables" ,julia-typedtables) - ("julia-weakrefstrings" ,julia-weakrefstrings))) + (list julia-documenter julia-offsetarrays julia-pooledarrays + julia-typedtables julia-weakrefstrings)) (home-page "https://github.com/JuliaArrays/StructArrays.jl") (synopsis "Efficient implementation of struct arrays in Julia") (description "This package introduces the type @code{StructArray} which is @@ -4638,13 +4659,10 @@ the @code{Pluto.jl} tabular data import functionality.") (base32 "1sqqagzqvav8b1rv5ywwbgy9ixvlmipq95fkwfwn0m8769i8jwzb")))) (build-system julia-build-system) (propagated-inputs - `(("julia-dataapi" ,julia-dataapi) - ("julia-datavalueinterfaces" ,julia-datavalueinterfaces) - ("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions) - ("julia-tabletraits" ,julia-tabletraits))) + (list julia-dataapi julia-datavalueinterfaces + julia-iteratorinterfaceextensions julia-tabletraits)) (native-inputs - `(("julia-datavalues" ,julia-datavalues) - ("julia-queryoperators" ,julia-queryoperators))) + (list julia-datavalues julia-queryoperators)) (home-page "https://github.com/JuliaData/Tables.jl") (synopsis "Interface for tables in Julia") (description "The @code{Tables.jl} package provides simple, yet powerful @@ -4669,8 +4687,7 @@ interface functions for working with all kinds tabular data.") (base32 "0gp3hpj3jvzfhkp9r345vfic2j2n2s60729wv38hwn75csp74cg5")))) (build-system julia-build-system) (propagated-inputs - `(("julia-datavalues" ,julia-datavalues) - ("julia-json" ,julia-json))) + (list julia-datavalues julia-json)) (home-page "https://github.com/queryverse/TableShowUtils.jl") (synopsis "Implement show for TableTraits.jl types") (description "This package provides some common helper functions that make @@ -4693,7 +4710,7 @@ participate in the @code{TableTraits.jl} ecosystem.") (base32 "08ssb2630wm6j8f2qa985mn2vfibfm5kjcn4ayl2qkhfcyp8daw4")))) (build-system julia-build-system) (propagated-inputs - `(("julia-iteratorinterfaceextensions" ,julia-iteratorinterfaceextensions))) + (list julia-iteratorinterfaceextensions)) (home-page "https://github.com/queryverse/TableTraits.jl") (synopsis "Traits for Julia tables") (description "TableTraits defines a generic interface for tabular data.") @@ -4739,11 +4756,8 @@ dimensions}.") (arguments `(#:tests? #f)) ; cycle with ImageMagick.jl (propagated-inputs - `(("julia-axisarrays" ,julia-axisarrays) - ("julia-colortypes" ,julia-colortypes) - ("julia-fileio" ,julia-fileio) - ("julia-offsetarrays" ,julia-offsetarrays) - ("julia-stringdistances" ,julia-stringdistances))) + (list julia-axisarrays julia-colortypes julia-fileio + julia-offsetarrays julia-stringdistances)) ;(native-inputs ; `(("julia-colors" ,julia-colors) ; ("julia-fixedpointnumbers" ,julia-fixedpointnumbers) @@ -4775,16 +4789,16 @@ package.") (patches (search-patches "julia-tracker-16-compat.patch")))) (build-system julia-build-system) (propagated-inputs - `(("julia-adapt" ,julia-adapt) - ("julia-diffrules" ,julia-diffrules) - ("julia-forwarddiff" ,julia-forwarddiff) - ("julia-macrotools" ,julia-macrotools) - ("julia-nanmath" ,julia-nanmath) - ("julia-nnlib" ,julia-nnlib) - ("julia-requires" ,julia-requires) - ("julia-specialfunctions" ,julia-specialfunctions))) + (list julia-adapt + julia-diffrules + julia-forwarddiff + julia-macrotools + julia-nanmath + julia-nnlib + julia-requires + julia-specialfunctions)) (native-inputs - `(("julia-pdmats" ,julia-pdmats))) + (list julia-pdmats)) (home-page "https://github.com/FluxML/Tracker.jl") (synopsis "Operator overloading reverse-mode automatic differentiator") (description "@code{Tracker.jl} previously provided @code{Flux.jl} with @@ -4834,9 +4848,7 @@ which are: (base32 "0nk6zhqvl2r8yhjdhb59kxq0srd3vy4ysg4d8rszj9a43dnn3w3i")))) (build-system julia-build-system) (propagated-inputs - `(("julia-adapt" ,julia-adapt) - ("julia-splitapplycombine" ,julia-splitapplycombine) - ("julia-tables" ,julia-tables))) + (list julia-adapt julia-splitapplycombine julia-tables)) (home-page "https://github.com/JuliaData/TypedTables.jl") (synopsis "Column-based storage for data analysis in Julia") (description "@code{TypedTables.jl} provides two column-based storage @@ -4892,7 +4904,7 @@ types, modules, and dictionaries.") (string-append out "/share/julia/loadpath/URIs/test"))) #t))))) ;; required for tests - (inputs `(("julia-json" ,julia-json))) + (inputs (list julia-json)) (home-page "https://github.com/JuliaWeb/URIs.jl") (synopsis "URI parsing in Julia") (description "@code{URIs.jl} is a Julia package that allows parsing and @@ -4914,8 +4926,10 @@ working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC (sha256 (base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq")))) (build-system julia-build-system) + (arguments + `(#:parallel-tests? #f)) (propagated-inputs - `(("julia-constructionbase" ,julia-constructionbase))) + (list julia-constructionbase)) (home-page "https://painterqubits.github.io/Unitful.jl/stable/") (synopsis "Physical units in Julia") (description "This package supports SI units and also many other unit @@ -4962,8 +4976,7 @@ useful in order to support @code{VersionNumber} comparisons applied to (base32 "14h1vdnc3rx87w6v2rr59lgb4kai2hd1wzqpxhmzsi8karg2z219")))) (build-system julia-build-system) (propagated-inputs - `(("julia-dataapi" ,julia-dataapi) - ("julia-parsers" ,julia-parsers))) + (list julia-dataapi julia-parsers)) (home-page "https://github.com/JuliaData/WeakRefStrings.jl") (synopsis "Efficient string representation and transfer in Julia") (description "This package provides a minimal String type for Julia that @@ -4984,6 +4997,16 @@ allows for efficient string representation and transfer") (sha256 (base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test-i686 + (lambda _ + (substitute* "test/woodbury.jl" + (("@test logdet\\(W\\)") + "@test_broken logdet(W)")))))) + '(%standard-phases)))) (home-page "https://github.com/timholy/WoodburyMatrices.jl") (synopsis "Support for the Woodbury matrix identity for Julia") (description "This package provides support for the Woodbury matrix identity @@ -5009,7 +5032,7 @@ inaccuracy in the result.") "15bm3ki5mb9nvqs2byznrryq0bilnjcvsfy3k05hxhk9vapilw7k")))) (build-system julia-build-system) (propagated-inputs - `(("julia-zlib-jll" ,julia-zlib-jll))) + (list julia-zlib-jll)) (home-page "https://github.com/fhs/ZipFile.jl") (synopsis "Read/Write ZIP archives in Julia") (description "This module provides support for reading and writing ZIP @@ -5031,7 +5054,7 @@ archives in Julia.") (base32 "07i2mf6rr5b8i6l82qgwl5arsb5pwyyzyfasgnszhdqllk9501bs")))) (build-system julia-build-system) (propagated-inputs - `(("julia-macrotools" ,julia-macrotools))) + (list julia-macrotools)) (home-page "https://github.com/FluxML/ZygoteRules.jl") (synopsis "Add minimal custom gradients to Zygote") (description "Minimal package which enables to add custom gradients to |