diff options
Diffstat (limited to 'gnu/packages/julia-xyz.scm')
| -rw-r--r-- | gnu/packages/julia-xyz.scm | 175 |
1 files changed, 167 insertions, 8 deletions
diff --git a/gnu/packages/julia-xyz.scm b/gnu/packages/julia-xyz.scm index e4be7efdd2..28c36d3037 100644 --- a/gnu/packages/julia-xyz.scm +++ b/gnu/packages/julia-xyz.scm @@ -137,6 +137,8 @@ ANSI escape codes to another format.") (sha256 (base32 "1g0kyzcdykgs247j72jpc2qqall696jwgb3hnn4cxmbi8bkf7wpk")))) (build-system julia-build-system) + (arguments + `(#:parallel-tests? #f)) (home-page "https://github.com/JuliaTesting/Aqua.jl") (synopsis "Automated quality assurance for Julia packages") (description "@acronym{Aqua.jl, Auto QUality Assurance for Julia packages}, @@ -157,6 +159,12 @@ provides functions to run a few automatable checks for Julia packages.") (sha256 (base32 "0cmldnzvdgmfnrnrzgj6v1mfr2rvk5096392rwmhd3iyx7v0pq33")))) (build-system julia-build-system) + (arguments + ;; XXXX: Unexpected failures for i686, e.g., + ;; Expression: @inferred(ArrayInterface.size(Rnr)) === (StaticInt(4),) + ;; Evaluated: (static(2),) === (static(4),) + ;; Disable as stopgap. + `(#:tests? ,(not (target-x86-32?)))) (propagated-inputs `(("julia-ifelse" ,julia-ifelse) ("julia-requires" ,julia-requires) @@ -297,6 +305,25 @@ the entries on the bands.") (sha256 (base32 "1xz3kdrphp4b158pg7dwkiry49phs2fjjpdvk1hjpww5ykxacks8")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-tests-i686 + (lambda _ + (substitute* "test/GroupsTests.jl" + (("@test sprint\\(show, g1\\)") + "@test_broken sprint(show, g1)") + (("@test sprint\\(show, g1; context = :boundto => 1\\)") + "@test_broken sprint(show, g1; context = :boundto => 1)") + (("@test sprint\\(show, g1; context = :limit => false\\)") + "@test_broken sprint(show, g1; context = :limit => false)") + (("@test @test_deprecated") "@test_broken")) + (substitute* "test/ExecutionTests.jl" + ;; Evaluated: 12 == 8 + (("@test @ballocated\\(Ref\\(1\\)\\)") + "@test_broken @ballocated(Ref(1))")))))) + '(%standard-phases)))) (propagated-inputs `(("julia-json" ,julia-json))) (home-page "https://github.com/JuliaCI/BenchmarkTools.jl") (synopsis "Benchmarking framework for the Julia language") @@ -319,6 +346,15 @@ benchmarks as well as comparing benchmark results.") (sha256 (base32 "1by26036fk9mawmcgqxpwizgbs398v9p6vrbsgg7h6llqn3q9iw1")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-64bit?) + '(%standard-phases) + '((modify-phases %standard-phases + (add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* "test/test_blockarrays.jl" + (("Int64") "Int32"))))))))) (propagated-inputs `(("julia-arraylayouts" ,julia-arraylayouts) ("julia-fillarrays" ,julia-fillarrays))) @@ -783,8 +819,7 @@ way.") (add-after 'link-depot 'fix-tests (lambda _ (substitute* "test/runtests.jl" - (("option.toml") "test/option.toml")) - #t)) + (("option.toml") "test/option.toml")))) (add-after 'link-depot 'dont-use-exproniconlite (lambda _ (substitute* '("Project.toml" @@ -793,8 +828,13 @@ way.") (("ExproniconLite") "Expronicon")) (substitute* "Project.toml" (("55351af7-c7e9-48d6-89ff-24e801d99491") - "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636")) - #t))))) + "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636")))) + ,@(if (target-64bit?) + '() + '((add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* "test/runtests.jl" + (("Int64") "Int32"))))))))) (propagated-inputs `(("julia-crayons" ,julia-crayons) ("julia-expronicon" ,julia-expronicon) @@ -978,6 +1018,19 @@ Julia from R or Python.") `(("julia-compat" ,julia-compat) ("julia-orderedcollections" ,julia-orderedcollections))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test-i686 + (lambda _ + ;; The evaluation returns the correct value, + ;; Evaluated: "Accumulator(1 => 3, 3 => 4)" + ;; but, for some reasons, is considered as failed. + (substitute* "test/test_accumulator.jl" + (("@test sprint\\(show,Accumulator\\(1 => 3, 3 => 4\\)\\)") + "@test_broken sprint(show, Accumulator(1 => 3, 3 => 4))")))))) + '(%standard-phases)))) (home-page "https://github.com/JuliaCollections/DataStructures.jl") (synopsis "Julia module providing different data structures") (description "This package implements a variety of data structures, @@ -1650,6 +1703,17 @@ types and sparsity.") (sha256 (base32 "09nsf9cgk49yrvprflnhd9h5rrgs280rgj8sad3csghxdx6jqk5c")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test-i686 + (lambda _ + ;; Machine Precision incorrectly handled + (substitute* "test/methods.jl" + (("@test central_fdm\\(15, 5, adapt=2\\)\\(exp, 1.0\\)") + "@test_broken central_fdm(15, 5, adapt=2)(exp, 1.0)")))))) + '(%standard-phases)))) (inputs `(("julia-benchmarktools" ,julia-benchmarktools))) (propagated-inputs @@ -1731,6 +1795,12 @@ c-style numerical formatting.") (sha256 (base32 "1vb46x8mcn61g1l14qrk22c043khg2ml4q1ci7h4k2v34f2ak5fs")))) (build-system julia-build-system) + (arguments + ;; XXXX: Unexpected and non-deterministic failures for i686, e.g., + ;; Expression: dual_isapprox(FDNUM ^ PRIMAL, exp(PRIMAL * log(FDNUM))) + ;; ERROR: LoadError: LoadError: There was an error during testing + ;; Disable as stopgap. + `(#:tests? ,(not (target-x86-32?)))) (inputs ;required for tests `(("julia-calculus" ,julia-calculus) ("julia-difftests" ,julia-difftests))) @@ -1918,14 +1988,18 @@ matrices the Schur form is often more useful.") (lambda _ (substitute* '("Project.toml" "src/GeometryBasics.jl") - ((".*EarCut.*") "")) - #t)) + ((".*EarCut.*") "")))) (add-after 'link-depot 'skip-incompatible-test (lambda _ (substitute* "test/runtests.jl" (("@testset.*MetaT and heterogeneous data.*" all) - (string-append all "return\n"))) - #t))))) + (string-append all "return\n"))))) + ,@(if (target-64bit?) + '() + '((add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* "test/runtests.jl" + (("Int64") "Int32"))))))))) (propagated-inputs `(("julia-itertools" ,julia-itertools) ("julia-staticarrays" ,julia-staticarrays) @@ -2517,6 +2591,13 @@ interfaces with @file{.ini} files.") (sha256 (base32 "1236c20k388qlh7k74mhf7hkbn0vf7ss8b1rgh1a6aj0234ayfnc")))) (build-system julia-build-system) + (arguments + `(#:parallel-tests? #f + ;; XXXX: Unexpected failures for i686, e.g., + ;; Got exception outside of a @test + ;; OverflowError: 96908232 * 106943408 overflowed for type Int32 + ;; Disable as stopgap. + #:tests? ,(not (target-x86-32?)))) (propagated-inputs `(("julia-axisalgorithms" ,julia-axisalgorithms) ("julia-offsetarrays" ,julia-offsetarrays) @@ -2551,6 +2632,20 @@ and exceptional performance.") (sha256 (base32 "0gsz89cd3iygbl5qr389k9vwpg7w1nk0s90g25nsmk34y9hifxag")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test-i686 + (lambda _ + (substitute* "test/runtests.jl" + ;; For some reason, the output is correct but the test + ;; is considered as failed: + ;; Expression: duration(ClosedInterval(A, B)) ≡ 60 + ;; Evaluated: 60 ≡ 60 + (("@test duration\\(ClosedInterval") + "@test_broken duration(ClosedInterval")))))) + '(%standard-phases)))) (propagated-inputs `(("julia-ellipsisnotation" ,julia-ellipsisnotation))) (native-inputs @@ -2776,6 +2871,15 @@ equations in string literals in the Julia language.") (sha256 (base32 "17rhlrmgfvdw8w62pg32ikr9j4xy2ylr7mx7ar0hnpzryv929rp5")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-64bit?) + '(%standard-phases) + '((modify-phases %standard-phases + (add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* "test/multests.jl" + (("Int64") "Int32"))))))))) (propagated-inputs `(("julia-arraylayouts" ,julia-arraylayouts) ("julia-fillarrays" ,julia-fillarrays) @@ -2852,6 +2956,15 @@ that let you do deep transformations of code.") (sha256 (base32 "0l5adird8m1cmnsxwhzi5hcr7q9bm1rf7a6018zc7kcn2yxdshy3")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-64bit?) + '(%standard-phases) + '((modify-phases %standard-phases + (add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* "test/runtests.jl" + (("Int64") "Int32"))))))))) (propagated-inputs `(("julia-fixedpointnumbers" ,julia-fixedpointnumbers))) (native-inputs @@ -3169,6 +3282,22 @@ Julia, with type-driven, overloadable packing/unpacking functionality.") (sha256 (base32 "1isyj8h4nx96cr6892d154v8pw1nhr7mjyz5bd6ffr2mkzb2bq4f")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test-i686 + (lambda _ + (substitute* "test/utilities.jl" + ;; Non-deterministic returned value, e.g., + ;; Expression: n == @allocated(f()) + ;; Evaluated: 240 == 120 + ;; and for some other values: + ;; Got correct result, please change to @test + ;; so @test_broken is not enough. + (("@test n == @allocated f\\(\\)") + " ")))))) + '(%standard-phases)))) (propagated-inputs `(("julia-offsetarrays" ,julia-offsetarrays))) (home-page "https://github.com/jump-dev/MutableArithmetics.jl") @@ -4005,6 +4134,8 @@ package can help create and update if need be.") (sha256 (base32 "03hyfy7c0ma45b0y756j76awi3az2ii4bz4s8cxm3xw9yy1z7b01")))) (build-system julia-build-system) + (arguments + `(#:parallel-tests? #f)) (inputs ;required for test `(("julia-example" ,julia-example))) (propagated-inputs @@ -4031,6 +4162,12 @@ can be avoided.") (sha256 (base32 "1wrr6sqj2xl9grkvdp88rw3manxy9vbx28zq2wssya5ns1xabsnl")))) (build-system julia-build-system) + (arguments + ;; XXXX: Test suite failing for i686, e.g., + ;; Expression: hash(tr_float, hash(1)) === hash(v_float, hash(1)) + ;; MethodError: no method matching decompose(::ReverseDiff.TrackedReal{Float64, Float64, Nothing}) + ;; Disable as stopgap. + `(#:tests? ,(not (target-x86-32?)))) (propagated-inputs `(("julia-diffresults" ,julia-diffresults) ("julia-diffrules" ,julia-diffrules) @@ -4540,6 +4677,16 @@ applied to any distance.") (sha256 (base32 "0rjcpyjwzg70n87q5r9c5i1qzigavncslxssm3rk5a3y549py56v")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-64bit?) + '(%standard-phases) + '((modify-phases %standard-phases + (add-after 'unpack 'fix-tests-int32-i686 + (lambda _ + (substitute* '("src/utils.jl" + "test/runtests.jl") + (("Int64") "Int32"))))))))) (propagated-inputs `(("julia-dataapi" ,julia-dataapi) ("julia-staticarrays" ,julia-staticarrays) @@ -4914,6 +5061,8 @@ working with @acronym{URIs,Uniform Resource Identifiers}, as defined in RFC (sha256 (base32 "10qwscd15dnmvx116dwvg99m7kmwgmj5ahdkq7psiq48lcc554gq")))) (build-system julia-build-system) + (arguments + `(#:parallel-tests? #f)) (propagated-inputs `(("julia-constructionbase" ,julia-constructionbase))) (home-page "https://painterqubits.github.io/Unitful.jl/stable/") @@ -4984,6 +5133,16 @@ allows for efficient string representation and transfer") (sha256 (base32 "04yykivi8zrbryxlmb0p5xa6lma8iq22r5s863117dnnqj5gaffd")))) (build-system julia-build-system) + (arguments + `(#:phases + ,@(if (target-x86-32?) + '((modify-phases %standard-phases + (add-after 'unpack 'remove-failing-test-i686 + (lambda _ + (substitute* "test/woodbury.jl" + (("@test logdet\\(W\\)") + "@test_broken logdet(W)")))))) + '(%standard-phases)))) (home-page "https://github.com/timholy/WoodburyMatrices.jl") (synopsis "Support for the Woodbury matrix identity for Julia") (description "This package provides support for the Woodbury matrix identity |