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-rw-r--r--gnu/packages/databases.scm224
1 files changed, 35 insertions, 189 deletions
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 6ec6d2929f..4f2d7ef11c 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -102,6 +102,7 @@
#:use-module (gnu packages gnome)
#:use-module (gnu packages gnupg)
#:use-module (gnu packages golang)
+ #:use-module (gnu packages gperf)
#:use-module (gnu packages gtk)
#:use-module (gnu packages guile)
#:use-module (gnu packages icu4c)
@@ -178,47 +179,6 @@
#:use-module (srfi srfi-26)
#:use-module (ice-9 match))
-(define-public 4store
- (package
- (name "4store")
- (version "1.1.6")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/4store/4store")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32 "1kzdfmwpzy64cgqlkcz5v4klwx99w0jk7afckyf7yqbqb4rydmpk"))
- (patches (search-patches "4store-unset-preprocessor-directive.patch"
- "4store-fix-buildsystem.patch"))))
- (build-system gnu-build-system)
- (native-inputs
- (list perl
- python-2
- autoconf
- automake
- gettext-minimal
- libtool
- `(,pcre "bin") ;for 'pcre-config'
- pkg-config))
- (inputs
- (list glib
- rasqal
- libxml2
- raptor2
- readline
- avahi
- cyrus-sasl
- openssl
- `(,util-linux "lib")))
- ;; http://www.4store.org has been down for a while now.
- (home-page "https://github.com/4store/4store")
- (synopsis "Clustered RDF storage and query engine")
- (description "4store is a RDF/SPARQL store written in C, supporting
-either single machines or networked clusters.")
- (license license:gpl3+)))
-
(define-public ephemeralpg
(package
(name "ephemeralpg")
@@ -1511,9 +1471,6 @@ CSV, DB3, iXF, SQLite, MS-SQL or MySQL to PostgreSQL.")
Most public APIs are compatible with @command{mysqlclient} and MySQLdb.")
(license license:expat)))
-(define-public python2-pymysql
- (package-with-python2 python-pymysql))
-
(define-public qdbm
(package
(name "qdbm")
@@ -2776,29 +2733,20 @@ semantics.")
(define-public libpqxx
(package
(name "libpqxx")
- (version "4.0.1")
+ (version "7.7.3")
(source (origin
- (method url-fetch)
- (uri (string-append
- "http://pqxx.org/download/software/libpqxx/"
- name "-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/jtv/libpqxx")
+ (commit version)))
+ (file-name (git-file-name name version))
(sha256
(base32
- "0f6wxspp6rx12fkasanb0z2g2gc8dhcfwnxagx8wwqbpg6ifsz09"))))
+ "1mrhsih5bhiin0l3c4vp22l9p7c5035m0vvqpx18c0407fkzc7hp"))))
(build-system gnu-build-system)
- (native-inputs
- `(("python" ,python-2)))
+ (native-inputs (list gcc-11 python-wrapper))
(inputs (list postgresql))
- (arguments
- `(#:tests? #f ; # FAIL: 1
- #:phases
- (modify-phases %standard-phases
- (add-before 'configure 'fix-sed-command
- (lambda _
- ;; Newer sed versions error out if double brackets are not used.
- (substitute* "configure"
- (("\\[:space:\\]") "[[:space:]]"))
- #t)))))
+ (arguments '(#:tests? #f)) ;tests require a running PostgreSQL server
(synopsis "C++ connector for PostgreSQL")
(description
"Libpqxx is a C++ library to enable user programs to communicate with the
@@ -2862,9 +2810,6 @@ support for sqlite, mysql and postgresql. If you already have a database, you
can autogenerate peewee models using @code{pwiz}, a model generator.")
(license license:expat)))
-(define-public python2-peewee
- (package-with-python2 python-peewee))
-
(define-public python-pypika-tortoise
(package
(name "python-pypika-tortoise")
@@ -3080,9 +3025,6 @@ development.")
for ODBC.")
(license (license:x11-style "file://LICENSE.TXT"))))
-(define-public python2-pyodbc-c
- (package-with-python2 python-pyodbc-c))
-
(define-public python-pyodbc
(package
(name "python-pyodbc")
@@ -3105,9 +3047,6 @@ for ODBC.")
for ODBC.")
(license (license:x11-style "file:///LICENSE.TXT"))))
-(define-public python2-pyodbc
- (package-with-python2 python-pyodbc))
-
(define-public mdbtools
(package
(name "mdbtools")
@@ -3215,14 +3154,30 @@ Memory-Mapped Database} (LMDB), a high-performance key-value store.")
(define-public virtuoso-ose
(package
(name "virtuoso-ose")
- (version "7.2.6")
+ (version "7.2.7")
(source
(origin
(method url-fetch)
(uri (string-append "mirror://sourceforge/virtuoso/virtuoso/" version "/"
"virtuoso-opensource-" version ".tar.gz"))
(sha256
- (base32 "0ly7s7a3w2a2zhhi9rq9k2qlnzapqbbc1rcdqb3zqqpgg81krz9q"))))
+ (base32 "1853ln0smiilf3pni70gq6nmi9ps039cy44g6b5i9d2z1n9hnj02"))
+ (patches (search-patches "virtuoso-ose-remove-pre-built-jar-files.patch"))
+ (modules '((guix build utils)))
+ ;; This snippet removes pre-built Java archives.
+ (snippet
+ '(for-each delete-file-recursively
+ (list "binsrc/hibernate"
+ "binsrc/jena"
+ "binsrc/jena2"
+ "binsrc/jena3"
+ "binsrc/jena4"
+ "binsrc/rdf4j"
+ "binsrc/sesame"
+ "binsrc/sesame2"
+ "binsrc/sesame3"
+ "binsrc/sesame4"
+ "libsrc/JDBCDriverType4")))))
(build-system gnu-build-system)
(arguments
`(#:tests? #f ; Tests require a network connection.
@@ -3233,6 +3188,9 @@ Memory-Mapped Database} (LMDB), a high-performance key-value store.")
"--enable-static=no")
#:phases
(modify-phases %standard-phases
+ (replace 'bootstrap
+ (lambda _
+ (invoke "sh" "autogen.sh")))
;; Even with "--enable-static=no", "libvirtuoso-t.a" is left in
;; the build output. The following phase removes it.
(add-after 'install 'remove-static-libs
@@ -3242,6 +3200,8 @@ Memory-Mapped Database} (LMDB), a high-performance key-value store.")
(delete-file (string-append lib "/" file)))
'("libvirtuoso-t.a"
"libvirtuoso-t.la"))))))))
+ (native-inputs
+ (list autoconf automake bison flex gperf libtool))
(inputs
(list openssl net-tools readline zlib))
(home-page "http://vos.openlinksw.com/owiki/wiki/VOS/")
@@ -3278,33 +3238,6 @@ local Cassandra clusters. It creates, launches and removes Cassandra clusters
on localhost.")
(license license:asl2.0)))
-(define-public python2-ccm
- (package-with-python2 python-ccm))
-
-(define-public python2-pysqlite
- (package
- (name "python2-pysqlite")
- (version "2.8.3")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "pysqlite" version))
- (sha256
- (base32
- "1424gwq9sil2ffmnizk60q36vydkv8rxs6m7xs987kz8cdc37lqp"))))
- (build-system python-build-system)
- (inputs
- (list sqlite))
- (arguments
- `(#:python ,python-2 ; incompatible with Python 3
- #:tests? #f)) ; no test target
- (home-page "https://github.com/ghaering/pysqlite")
- (synopsis "SQLite bindings for Python")
- (description
- "Pysqlite provides SQLite bindings for Python that comply to the
-Database API 2.0T.")
- (license license:zlib)))
-
(define-public python-sqlalchemy
(package
(name "python-sqlalchemy")
@@ -3343,30 +3276,6 @@ designed for efficient and high-performing database access, adapted into a
simple and Pythonic domain language.")
(license license:x11)))
-(define-public python2-sqlalchemy
- (let ((base (package-with-python2 python-sqlalchemy)))
- (package
- (inherit base)
- (arguments
- (substitute-keyword-arguments (package-arguments base)
- ((#:phases phases)
- #~(modify-phases #$phases
- (replace 'check
- (lambda* (#:key tests? #:allow-other-keys)
- (when tests?
- (invoke "pytest" "-vv"
- ;; The memory usage tests are very expensive and run in
- ;; sequence; skip them.
- "-k"
- (string-append
- "not test_memusage.py"
- ;; This test fails with "AssertionError: Warnings
- ;; were not seen [...]".
- " and not test_fixture_five")))))))))
- ;; Do not use pytest-xdist, which is broken for Python 2.
- (native-inputs (modify-inputs (package-native-inputs base)
- (delete "python-pytest-xdist"))))))
-
(define-public python-sqlalchemy-stubs
(package
(name "python-sqlalchemy-stubs")
@@ -3525,17 +3434,8 @@ value in database is immediately visible to other processes accessing the same
database. Concurrency is possible because the values are stored in separate
files. Hence the “database” is a directory where all files are governed by
PickleShare.")
- (properties `((python2-variant . ,(delay python2-pickleshare))))
(license license:expat)))
-(define-public python2-pickleshare
- (let ((pickleshare (package-with-python2
- (strip-python2-variant python-pickleshare))))
- (package (inherit pickleshare)
- (propagated-inputs (modify-inputs (package-propagated-inputs
- pickleshare)
- (prepend python2-pathlib2))))))
-
(define-public python-apsw
(package
(name "python-apsw")
@@ -3579,9 +3479,6 @@ pysqlite it focuses on being a minimal layer over SQLite attempting just to
translate the complete SQLite API into Python.")
(license license:zlib)))
-(define-public python2-apsw
- (package-with-python2 python-apsw))
-
(define-public python-aiosqlite
(package
(name "python-aiosqlite")
@@ -3638,48 +3535,6 @@ managers for automatically closing connections.")
(description "This package implements async database support for Python.")
(license license:bsd-3)))
-(define-public python2-neo4j-driver
- (package
- (name "python2-neo4j-driver")
- ;; NOTE: When upgrading to 1.5.0, please add a python3 variant.
- (version "1.4.0")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "neo4j-driver" version))
- (sha256
- (base32
- "011r1vh182p8mm83d8dz9rfnc3l7rf7fd00cyrbyfzi71jmc4g98"))))
- (build-system python-build-system)
- (arguments
- `(#:python ,python-2))
- (home-page "https://neo4j.com/developer/python/")
- (synopsis "Neo4j driver code written in Python")
- (description "This package provides the Neo4j Python driver that connects
-to the database using Neo4j's binary protocol. It aims to be minimal, while
-being idiomatic to Python.")
- (license license:asl2.0)))
-
-(define-public python2-py2neo
- (package
- (name "python2-py2neo")
- (version "3.1.2")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "py2neo" version))
- (sha256
- (base32
- "1f1q95vqcvlc3nsc33p841swnjdcjazddlq2dzi3qfnjqjrajxw1"))))
- (build-system python-build-system)
- (arguments
- `(#:python ,python-2))
- (home-page "https://py2neo.org")
- (synopsis "Library and toolkit for working with Neo4j in Python")
- (description "This package provides a client library and toolkit for
-working with Neo4j from within Python applications and from the command
-line. The core library has no external dependencies and has been carefully
-designed to be easy and intuitive to use.")
- (license license:asl2.0)))
-
(define-public python-psycopg2
(package
(name "python-psycopg2")
@@ -3916,9 +3771,6 @@ for Python. The design goals are:
parsing code in hiredis. It primarily speeds up parsing of multi bulk replies.")
(license license:bsd-3)))
-(define-public python2-hiredis
- (package-with-python2 python-hiredis))
-
(define-public python-aioredis
(package
(name "python-aioredis")
@@ -4005,9 +3857,6 @@ reasonable substitute.")
"This package provides a Python interface to the Redis key-value store.")
(license license:expat)))
-(define-public python2-redis
- (package-with-python2 python-redis))
-
(define-public python-rq
(package
(name "python-rq")
@@ -4105,9 +3954,6 @@ is designed to have a low barrier to entry.")
Redis protocol.")
(license license:bsd-2)))
-(define-public python2-trollius-redis
- (package-with-python2 python-trollius-redis))
-
(define-public python-sqlparse
(package
(name "python-sqlparse")
@@ -4193,7 +4039,7 @@ the SQL language using a syntax that reflects the resulting query.")
(define-public apache-arrow
(package
(name "apache-arrow")
- (version "7.0.0")
+ (version "8.0.0")
(source
(origin
(method git-fetch)
@@ -4203,7 +4049,7 @@ the SQL language using a syntax that reflects the resulting query.")
(file-name (git-file-name name version))
(sha256
(base32
- "19xx6mlddca79q6d3wga574m4y32ixmxx2rmk6j3f22i5c37mjzw"))))
+ "1gwiflk72pq1krc0sjzabypmh7slfyf7ak71fiypy3xgzw8a777c"))))
(build-system cmake-build-system)
(arguments
`(#:tests? #f