diff options
Diffstat (limited to 'gnu/packages/databases.scm')
| -rw-r--r-- | gnu/packages/databases.scm | 246 |
1 files changed, 222 insertions, 24 deletions
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 564927c2a7..238ba34053 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -28,7 +28,7 @@ ;;; Copyright © 2017, 2018 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2017, 2018, 2019 Pierre Langlois <pierre.langlois@gmx.com> -;;; Copyright © 2015, 2017, 2018, 2019, 2021, 2022, 2023 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2017, 2018, 2019, 2021, 2022, 2023, 2024 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017 Kristofer Buffington <kristoferbuffington@gmail.com> ;;; Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net> ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com> @@ -45,8 +45,8 @@ ;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> ;;; Copyright © 2020 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> -;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> -;;; Copyright © 2021 Greg Hogan <code@greghogan.com> +;;; Copyright © 2021, 2024 Sharlatan Hellseher <sharlatanus@gmail.com> +;;; Copyright © 2021, 2024 Greg Hogan <code@greghogan.com> ;;; Copyright © 2021 David Larsson <david.larsson@selfhosted.xyz> ;;; Copyright © 2021 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2021 Bonface Munyoki Kilyungi <me@bonfacemunyoki.com> @@ -62,6 +62,7 @@ ;;; Copyright © 2023 Felix Gruber <felgru@posteo.ne ;;; Copyright © 2023 Munyoki Kilyungi <me@bonfacemunyoki.com> ;;; Copyright © 2023 Giacomo Leidi <goodoldpaul@autistici.org> +;;; Copyright © 2024 Troy Figiel <troy@troyfigiel.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -107,8 +108,10 @@ #:use-module (gnu packages gnome) #:use-module (gnu packages gnupg) #:use-module (gnu packages golang) + #:use-module (gnu packages golang-build) #:use-module (gnu packages golang-check) #:use-module (gnu packages golang-web) + #:use-module (gnu packages golang-xyz) #:use-module (gnu packages gperf) #:use-module (gnu packages gtk) #:use-module (gnu packages guile) @@ -142,6 +145,7 @@ #:use-module (gnu packages python) #:use-module (gnu packages python-build) #:use-module (gnu packages python-check) + #:use-module (gnu packages python-compression) #:use-module (gnu packages python-crypto) #:use-module (gnu packages python-science) #:use-module (gnu packages python-web) @@ -156,7 +160,6 @@ #:use-module (gnu packages sphinx) #:use-module (gnu packages ssh) #:use-module (gnu packages sqlite) - #:use-module (gnu packages syncthing) ;for go-github-com-lib-pq #:use-module (gnu packages tcl) #:use-module (gnu packages terminals) #:use-module (gnu packages texinfo) @@ -189,6 +192,39 @@ #:use-module (srfi srfi-26) #:use-module (ice-9 match)) +(define-public duckdb + (package + (name "duckdb") + (version "0.9.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/duckdb/duckdb") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0dbsxyiz7c8sxflbfj87qv0b2s69zk802vsk5h00ra8w8fcbqlj0")) + (modules '((guix build utils))) + (snippet + #~(begin + ;; There is no git checkout from which to read the version tag. + (substitute* "CMakeLists.txt" + (("set\\(DUCKDB_VERSION \"[^\"]*\"") + (string-append "set(DUCKDB_VERSION \"v" #$version "-dev0\""))))))) + (build-system cmake-build-system) + (home-page "https://duckdb.org") + (synopsis "In-process SQL OLAP database management system") + (description "CLI and C/C++ source libraries for DuckDB, a relational +(table-oriented) @acronym{DBMS, Database Management System} that supports +@acronym{SQL, Structured Query Language}, contains a columnar-vectorized query +execution engine, and provides transactional @acronym{ACID, Atomicity +Consistency Isolation and Durability} guarantees via bulk-optimized +@acronym{MVCC, Multi-Version Concurrency Control}. Data can be stored in +persistent, single-file databases with support for secondary indexes.") + (license license:expat))) + (define-public ephemeralpg (package (name "ephemeralpg") @@ -578,6 +614,35 @@ the API, and provides features such as: @end itemize") (license license:bsd-3))) +(define-public python-prisma + (package + (name "python-prisma") + (version "0.12.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "prisma" version)) + (sha256 + (base32 "1y9m3bailnvid59dl4vx31vysaqbcg6gsppskyymaxg3m96808pc")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-cached-property + python-click + python-dotenv + python-httpx + python-jinja2 + python-nodeenv + python-pydantic + python-strenum + python-tomlkit + python-typing-extensions)) + (home-page "https://github.com/RobertCraigie/prisma-client-py") + (synopsis "Fully type-safe database client") + (description + "Prisma Client Python is an auto-generated and fully type-safe database +client.") + (license license:asl2.0))) + (define-public python-pylibmc (package (name "python-pylibmc") @@ -1417,6 +1482,56 @@ PostgreSQL extension, providing automatic partitioning across time and space (partitioning key), as well as full SQL support.") (license license:asl2.0))) +(define-public pgvector + (package + (name "pgvector") + (version "0.6.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pgvector/pgvector") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "19zcjrlmyj7gfbn8prh014yq50iy4dg97pirsm7idxsr829vwyc5")))) + (build-system gnu-build-system) + (arguments + (list + ;; Do not use -march=native + #:make-flags + '(list "OPTFLAGS=") + #:phases + #~(modify-phases %standard-phases + (delete 'configure) + (replace 'install + (lambda _ + (let ((extension (string-append #$output "/share/extension")) + (lib (string-append #$output "/lib")) + (headers (string-append #$output "/include/server/extension/vector"))) + (for-each mkdir-p (list extension lib headers)) + (install-file "vector.so" lib) + (chmod (string-append lib "/vector.so") #o755) + (install-file "vector.control" extension) + (for-each (lambda (file) + (install-file file extension)) + (find-files "sql" "\\.sql$")) + (install-file "src/vector.h" headers))))))) + (inputs (list postgresql)) + (home-page "https://github.com/pgvector/pgvector") + (synopsis "Vector similarity search for Postgres") + (description + "This package provides a vector similarity search extension for Postgres. +Store your vectors with the rest of your data. It supports: + +@itemize +@item exact and approximate nearest neighbor search; +@item L2 distance, inner product, and cosine distance; +@item any language with a Postgres client. +@end itemize +") + (license (license:x11-style "file://COPYRIGHT")))) + (define-public pgloader (package (name "pgloader") @@ -3319,6 +3434,10 @@ etc., and an SQL engine for performing simple SQL queries.") (arguments '(#:tests? #f ; Tests try to use a running mongodb server. #:import-path "gopkg.in/mgo.v2")) + (propagated-inputs + (list go-gopkg.in-tomb.v2)) + (inputs + (list cyrus-sasl)) (native-inputs (list go-gopkg-in-check-v1)) (home-page "https://gopkg.in/mgo.v2") @@ -3763,7 +3882,7 @@ PickleShare.") (define-public python-apsw (package (name "python-apsw") - (version "3.42.0.1") + (version "3.45.1.0") ;; The compressed release has fetching functionality disabled. (source (origin @@ -3773,11 +3892,11 @@ PickleShare.") version "/apsw-" version ".zip")) (sha256 (base32 - "0dr7zymn45x2793cilr709rnwn9g1c4n4vzln57y2lhj7420ykic")))) + "1vfrzb414pbh5k0cgcqkp039jvla2galapn4a551zgh8xi70bnrp")))) (build-system pyproject-build-system) (native-inputs - (list python-cython unzip)) - (inputs (list sqlite-next)) ;SQLite 3.42 required. + (list unzip)) + (inputs (list sqlite-next)) ;SQLite 3.45.1 required. (arguments (list #:phases @@ -4082,19 +4201,21 @@ files or Python scripts that define a list of migration steps.") (define-public python-mysqlclient (package (name "python-mysqlclient") - (version "2.0.1") + (version "2.2.4") (source (origin (method url-fetch) (uri (pypi-uri "mysqlclient" version)) (sha256 - (base32 - "1rf5l8hazs3v18hmcrm90z3hi9wxv553ipwd5l6kj8j7l6p7abzv")))) - (build-system python-build-system) - (arguments '(#:tests? #f)) ;XXX: requires a live database - (inputs - `(("mysql-dev" ,mariadb "dev"))) - (home-page "https://github.com/PyMySQL/mysqlclient-python") + (base32 "0hdznfz9095d2qhl7awbp39s7wpqbxn37xzan487qzaf8srrzg1k")))) + (build-system pyproject-build-system) + (arguments + (list #:test-flags + #~'("tests/test__mysql.py" ;tests not needing a live db + "tests/test_MySQLdb_times.py"))) + (native-inputs (list pkg-config python-pytest)) + (inputs (list mariadb-connector-c)) + (home-page "https://github.com/PyMySQL/mysqlclient") (synopsis "MySQLdb is an interface to the popular MySQL database server for Python") (description "MySQLdb is an interface to the popular MySQL database server for Python. The design goals are: @@ -4394,7 +4515,7 @@ the SQL language using a syntax that reflects the resulting query.") (define-public apache-arrow (package (name "apache-arrow") - (version "14.0.0") + (version "15.0.1") (source (origin (method git-fetch) @@ -4404,7 +4525,7 @@ the SQL language using a syntax that reflects the resulting query.") (file-name (git-file-name name version)) (sha256 (base32 - "08x01jcibmx03g9p0sjikp3dyynw6is6gyn0m3cy1gwkpkwk2ad2")))) + "0zrcwsq9c976xncc1kg6lw24s5r3ag8vfzhmcnkvi5z2c9x4lvvc")))) (build-system cmake-build-system) (arguments (list @@ -4867,6 +4988,77 @@ implementation, along with tools for interoperability with pandas, NumPy, and other traditional Python scientific computing packages.") (license license:asl2.0))) +(define-public python-fastparquet + (package + (name "python-fastparquet") + (version "2024.2.0") + (source + (origin + ;; Fastparquet uses setuptools-scm to find the current version. This + ;; only works when we use the PyPI tarball, which does not contain + ;; tests. Instead, we use the git-fetch method and set the version via + ;; envar. + (method git-fetch) + (uri (git-reference + (url "https://github.com/dask/fastparquet") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0f32dj1xvd11l0siznqd33dpjlhg9siylcjcfkcdlqfcy45jfj3v")))) + (build-system pyproject-build-system) + (arguments + (list + #:test-flags + #~(list "-n" "auto") + #:phases + #~(modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "setup.py" + ;; Remove dependencies on git. + (("^.*\"git\", \"status\".*$") "") + ;; Guix is only compatible with a single version of numpy + ;; at a time. We can safely remove this dependency. + (("'oldest-supported-numpy'") "")))) + (add-before 'build 'pretend-version + ;; The version string is usually derived via setuptools-scm, but + ;; without the git metadata available, the version string is set + ;; to '0.0.0'. + (lambda _ + (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version))) + (add-before 'check 'build-cython-extensions + ;; Cython extensions need to be built for the check phase. + (lambda _ + (invoke "python" "setup.py" "build_ext" "--inplace")))))) + (propagated-inputs + (list python-cramjam + python-fsspec + python-lzo + python-numpy + python-packaging + python-pandas)) + (native-inputs + (list python-cython + python-pytest-runner + python-pytest-xdist + python-setuptools-scm)) + (home-page "https://github.com/dask/fastparquet") + (synopsis "Python implementation of the Parquet file format") + (description + "@code{fastparquet} is a Python implementation of the Parquet file +format. @code{fastparquet} is used implicitly by @code{dask}, @code{pandas} +and @code{intake-parquet}. It supports the following compression algorithms: + +@itemize +@item Gzip +@item Snappy +@item Brotli +@item LZ4 +@item Zstd +@item LZO (optionally) +@end itemize") + (license license:asl2.0))) + (define-public python-crate (package (name "python-crate") @@ -5162,11 +5354,10 @@ compatible with SQLite using a graphical user interface.") (package (name "sqls") (version "0.2.18") - (home-page "https://github.com/lighttiger2505/sqls") (source (origin (method git-fetch) (uri (git-reference - (url home-page) + (url "https://github.com/sqls-server/sqls") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 @@ -5174,17 +5365,22 @@ compatible with SQLite using a graphical user interface.") "13837v27avdp2nls3vyy7ml12nj7rxragchwf92adn10ffp4aj6c")))) (build-system go-build-system) (arguments - '(#:import-path "github.com/lighttiger2505/sqls")) + (list + #:install-source? #f + #:import-path "github.com/lighttiger2505/sqls")) (inputs (list go-github-com-go-sql-driver-mysql go-github-com-lib-pq + go-github-com-mattn-go-runewidth go-github-com-mattn-go-sqlite3 go-github-com-olekukonko-tablewriter go-github-com-pkg-errors go-github-com-sourcegraph-jsonrpc2 go-golang-org-x-crypto - go-github-com-mattn-go-runewidth go-golang-org-x-xerrors go-gopkg-in-yaml-v2)) + (native-inputs (list go-github-com-google-go-cmp-cmp + go-github-com-k0kubun-pp)) + (home-page "https://github.com/sqls-server/sqls") (synopsis "SQL language server written in Go") (description "This package implements the @acronym{LSP, Language Server Protocol} for SQL.") @@ -5221,7 +5417,7 @@ mechanism of @code{dogpile}.") (define-public datasette (package (name "datasette") - (version "0.64.2") + (version "1.0a7") (source (origin (method git-fetch) ;for tests (uri (git-reference @@ -5230,7 +5426,7 @@ mechanism of @code{dogpile}.") (file-name (git-file-name name version)) (sha256 (base32 - "1c8ajdaraynrjvsb8xxxnkb7zgm5fwq60qczaz00n465ki80j4h3")))) + "1wwdx2xqkxygbww1nzpr6h702ims6zcxpjskh8fldn1kby591qgg")))) (build-system pyproject-build-system) (arguments (list @@ -5269,6 +5465,7 @@ mechanism of @code{dogpile}.") (list python-aiofiles python-asgi-csrf python-asgiref + python-asyncinject python-click python-click-default-group python-httpx @@ -5280,6 +5477,7 @@ mechanism of @code{dogpile}.") python-pint python-pluggy python-pyyaml + python-sqlite-utils python-uvicorn)) (native-inputs (list python-beautifulsoup4 |