summaryrefslogtreecommitdiff
path: root/gnu/packages/cran.scm
diff options
context:
space:
mode:
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r--gnu/packages/cran.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d07d63d429..68af10f36b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -22299,3 +22299,27 @@ via Newick parenthetic text. This improves accessibility to the comprehensive
range of object-specific analytical and tree-visualization functions found
across a wide array of bioinformatic R packages.")
(license license:gpl3)))
+
+(define-public r-kmer
+ (package
+ (name "r-kmer")
+ (version "1.1.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "kmer" version))
+ (sha256
+ (base32 "0jimn9r0abglwxdl1zqz0lxa99cmj6haydkxjzqfbpx9by80wnww"))))
+ (properties `((upstream-name . "kmer")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-openssl" ,r-openssl)
+ ("r-phylogram" ,r-phylogram)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://github.com/shaunpwilkinson/kmer/")
+ (synopsis "Fast K-Mer counting and clustering for biological sequence analysis")
+ (description
+ "@code{r-kmer} is an R package for rapidly computing distance matrices
+and clustering large sequence datasets using fast alignment-free k-mer
+counting and recursive k-means partitioning.")
+ (license license:gpl3)))