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-rw-r--r--gnu/packages/cran.scm78
1 files changed, 78 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index fff71790b6..b27dd40871 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -21726,3 +21726,81 @@ of R without the need of linking to R code. Rserve supports remote
connection, user authentication and file transfer. A simple R client is
included in this package as well.")
(license license:gpl2)))
+
+(define-public r-brms
+ (package
+ (name "r-brms")
+ (version "2.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "brms" version))
+ (sha256
+ (base32
+ "1699lwkklfhjz7fddawlig552g2zvrc34mqwrzqjgl35r9fm08gs"))))
+ (properties `((upstream-name . "brms")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-abind" ,r-abind)
+ ("r-backports" ,r-backports)
+ ("r-bayesplot" ,r-bayesplot)
+ ("r-bridgesampling" ,r-bridgesampling)
+ ("r-coda" ,r-coda)
+ ("r-future" ,r-future)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-glue" ,r-glue)
+ ("r-loo" ,r-loo)
+ ("r-matrix" ,r-matrix)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-mgcv" ,r-mgcv)
+ ("r-nleqslv" ,r-nleqslv)
+ ("r-nlme" ,r-nlme)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rstan" ,r-rstan)
+ ("r-rstantools" ,r-rstantools)
+ ("r-shinystan" ,r-shinystan)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page
+ "https://github.com/paul-buerkner/brms")
+ (synopsis
+ "Bayesian Regression Models using 'Stan'")
+ (description
+ "Fit Bayesian generalized (non-)linear multivariate multilevel models
+using 'Stan' for full Bayesian inference. A wide range of distributions and
+link functions are supported, allowing users to fit -- among others -- linear,
+robust linear, count data, survival, response times, ordinal, zero-inflated,
+hurdle, and even self-defined mixture models all in a multilevel context.
+Further modeling options include non-linear and smooth terms, auto-correlation
+structures, censored data, meta-analytic standard errors, and quite a few
+more. In addition, all parameters of the response distribution can be
+predicted in order to perform distributional regression. Prior specifications
+are flexible and explicitly encourage users to apply prior distributions that
+actually reflect their beliefs. Model fit can easily be assessed and compared
+with posterior predictive checks and leave-one-out cross-validation.")
+ (license license:gpl2)))
+
+(define-public r-mstate
+ (package
+ (name "r-mstate")
+ (version "0.2.12")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mstate" version))
+ (sha256
+ (base32
+ "0qnhivbibzss8yfsg44cvbf73n4jj4i28rbdysl88g14ig5sabgv"))))
+ (properties `((upstream-name . "mstate")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-survival" ,r-survival)))
+ (home-page
+ "https://www.lumc.nl/org/bds/research/medische-statistiek/survival-analysis/")
+ (synopsis
+ "Data Preparation, Estimation and Prediction in Multi-State Models")
+ (description
+ "Contains functions for data preparation, descriptives, hazard estimation
+and prediction with Aalen-Johansen or simulation in competing risks and
+multi-state models.")
+ (license license:gpl2+)))