diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 65 |
1 files changed, 65 insertions, 0 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 3657ae1515..10d480a80c 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -24431,3 +24431,68 @@ statistics-sensitive non-linear iterative peak-clipping algorithm (SNIP), peak alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions.") (license license:gpl3+))) + +(define-public r-seurat + (package + (name "r-seurat") + (version "3.2.0") + (source (origin + (method url-fetch) + (uri (cran-uri "Seurat" version)) + (sha256 + (base32 + "1vj3dlsqakgnn4x1jz9fkl2cy0jzc5s65h1c20fnamr7lk45pnf2")))) + (properties `((upstream-name . "Seurat"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ape" ,r-ape) + ("r-cluster" ,r-cluster) + ("r-cowplot" ,r-cowplot) + ("r-fitdistrplus" ,r-fitdistrplus) + ("r-future" ,r-future) + ("r-future-apply" ,r-future-apply) + ("r-ggplot2" ,r-ggplot2) + ("r-ggrepel" ,r-ggrepel) + ("r-ggridges" ,r-ggridges) + ("r-httr" ,r-httr) + ("r-ica" ,r-ica) + ("r-igraph" ,r-igraph) + ("r-irlba" ,r-irlba) + ("r-jsonlite" ,r-jsonlite) + ("r-kernsmooth" ,r-kernsmooth) + ("r-leiden" ,r-leiden) + ("r-lmtest" ,r-lmtest) + ("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-miniui" ,r-miniui) + ("r-patchwork" ,r-patchwork) + ("r-pbapply" ,r-pbapply) + ("r-plotly" ,r-plotly) + ("r-png" ,r-png) + ("r-rann" ,r-rann) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rcpp" ,r-rcpp) + ("r-rcppannoy" ,r-rcppannoy) + ("r-rcppeigen" ,r-rcppeigen) + ("r-rcppprogress" ,r-rcppprogress) + ("r-reticulate" ,r-reticulate) + ("r-rlang" ,r-rlang) + ("r-rocr" ,r-rocr) + ("r-rsvd" ,r-rsvd) + ("r-rtsne" ,r-rtsne) + ("r-scales" ,r-scales) + ("r-sctransform" ,r-sctransform) + ("r-shiny" ,r-shiny) + ("r-spatstat" ,r-spatstat) + ("r-tibble" ,r-tibble) + ("r-uwot" ,r-uwot))) + (home-page "http://www.satijalab.org/seurat") + (synopsis "Seurat is an R toolkit for single cell genomics") + (description + "This package is an R package designed for QC, analysis, and +exploration of single cell RNA-seq data. It easily enables widely-used +analytical techniques, including the identification of highly variable genes, +dimensionality reduction; PCA, ICA, t-SNE, standard unsupervised clustering +algorithms; density clustering, hierarchical clustering, k-means, and the +discovery of differentially expressed genes and markers.") + (license license:gpl3))) |