diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 749 |
1 files changed, 516 insertions, 233 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 6f931f06c2..023d726fe0 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -111,14 +111,14 @@ (define-public r-brio (package (name "r-brio") - (version "1.1.1") + (version "1.1.2") (source (origin (method url-fetch) (uri (cran-uri "brio" version)) (sha256 (base32 - "0ai2pqw5zk11r0rl2xshsq095ix1sdp2vjlixz2qxvy27x145ykh")))) + "1vviykwx1z71yhk1xl87riaygj8sq0sj7ixyig1irqsi66aydpa2")))) (properties `((upstream-name . "brio"))) (build-system r-build-system) (home-page "https://github.com/r-lib/brio") @@ -153,6 +153,35 @@ can limit either their total size or the age of the oldest object (or both), automatically pruning objects to maintain the constraints.") (license license:expat))) +(define-public r-curry + (package + (name "r-curry") + (version "0.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "curry" version)) + (sha256 + (base32 + "1ps9hvbnb02m0b8hlw4admwbziyjvswj08ldi2dk3ymnrpawcc29")))) + (properties `((upstream-name . "curry"))) + (build-system r-build-system) + (home-page "https://github.com/thomasp85/curry") + (synopsis "Partial function application") + (description + "Partial application is the process of reducing the arity of a function +by fixing one or more arguments, thus creating a new function lacking the +fixed arguments. The @code{curry} package provides three different ways of +performing partial function application by fixing arguments from either end of +the argument list (currying and tail currying) or by fixing multiple named +arguments (partial application). This package provides this functionality +through the @code{%<%}, @code{%-<%}, and @code{%><%} operators which allows +for a programming style comparable to modern functional languages. Compared +to other implementations such a @code{purrr::partial()} the operators in +@code{curry} composes functions with named arguments, aiding in autocomplete +etc.") + (license license:gpl2+))) + (define-public r-diffobj (package (name "r-diffobj") @@ -175,6 +204,97 @@ automatically pruning objects to maintain the constraints.") visualization of their differences.") (license license:gpl2+))) +(define-public r-googledrive + (package + (name "r-googledrive") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "googledrive" version)) + (sha256 + (base32 + "0qbyl0wyrxmwn9jg0d2s7c1kmmvmx61qbyx3qby4js8dks70f1ls")))) + (properties `((upstream-name . "googledrive"))) + (build-system r-build-system) + (propagated-inputs + `(("r-curl" ,r-curl) + ("r-gargle" ,r-gargle) + ("r-glue" ,r-glue) + ("r-httr" ,r-httr) + ("r-jsonlite" ,r-jsonlite) + ("r-magrittr" ,r-magrittr) + ("r-purrr" ,r-purrr) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble) + ("r-uuid" ,r-uuid))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://googledrive.tidyverse.org") + (synopsis "Interface to Google Drive") + (description "This package lets you manage Google Drive files from R.") + (license license:expat))) + +(define-public r-ids + (package + (name "r-ids") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "ids" version)) + (sha256 + (base32 + "1s6ga94gds5ydr9f8qbjfgfpg2dvbnkcrlybqlb33hk3c0c2l8dn")))) + (properties `((upstream-name . "ids"))) + (build-system r-build-system) + (propagated-inputs + `(("r-openssl" ,r-openssl) + ("r-uuid" ,r-uuid))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/richfitz/ids") + (synopsis "Generate random identifiers") + (description + "This package lets you generate random or human readable and +pronounceable identifiers.") + (license license:expat))) + +(define-public r-googlesheets4 + (package + (name "r-googlesheets4") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "googlesheets4" version)) + (sha256 + (base32 + "04b17cdzah2r92qj7imrdlpfzyxwyf1vx8k1kvsr36nqg383f4b2")))) + (properties `((upstream-name . "googlesheets4"))) + (build-system r-build-system) + (propagated-inputs + `(("r-cellranger" ,r-cellranger) + ("r-curl" ,r-curl) + ("r-gargle" ,r-gargle) + ("r-glue" ,r-glue) + ("r-googledrive" ,r-googledrive) + ("r-httr" ,r-httr) + ("r-ids" ,r-ids) + ("r-lifecycle" ,r-lifecycle) + ("r-magrittr" ,r-magrittr) + ("r-purrr" ,r-purrr) + ("r-rematch2" ,r-rematch2) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble) + ("r-vctrs" ,r-vctrs))) + (home-page "https://github.com/tidyverse/googlesheets4") + (synopsis "Access Google Sheets using the Sheets API V4") + (description + "This package lets you interact with Google Sheets through the +@url{https://developers.google.com/sheets/api,Sheets API v4}. This package +can read and write both the metadata and the cell data in a Sheet.") + (license license:expat))) + (define-public r-waldo (package (name "r-waldo") @@ -253,14 +373,14 @@ degree elevation and curve fitting.") (define-public r-v8 (package (name "r-v8") - (version "3.4.0") + (version "3.4.2") (source (origin (method url-fetch) (uri (cran-uri "V8" version)) (sha256 (base32 - "1g9z22pc8ydx1yhv57ww2d2jg5hvrl7ilwa79x89zgn17jha5j7m")))) + "1vfj89shfzx7b6papi2y671l8gksng775kilmqzl5gx87i3l61i1")))) (properties `((upstream-name . "V8"))) (build-system r-build-system) (arguments @@ -282,7 +402,8 @@ degree elevation and curve fitting.") (assoc-ref inputs "node") "/lib")) #t))))) (inputs - `(("node" ,libnode))) + `(("node" ,libnode) + ("zlib" ,zlib))) (propagated-inputs `(("r-curl" ,r-curl) ("r-jsonlite" ,r-jsonlite) @@ -600,14 +721,14 @@ information.") (define-public r-ellipsis (package (name "r-ellipsis") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "ellipsis" version)) (sha256 (base32 - "1nvmkcca57d9067rcggw1gby80ibx5hplk2myz0cs9zwilaib2jg")))) + "0n0mm9jngklv7j9wa64jdji035z0smmnsp2dfwcz9isrxgjnc0m9")))) (build-system r-build-system) (propagated-inputs `(("r-rlang" ,r-rlang))) @@ -669,13 +790,13 @@ objects.") (define-public r-mboost (package (name "r-mboost") - (version "2.9-4") + (version "2.9-5") (source (origin (method url-fetch) (uri (cran-uri "mboost" version)) (sha256 (base32 - "1dgyc38axfk2a430wsdnnk76xikizkyxf5r0l1kbp6cacrx6idz0")))) + "0yg07fdd1sbjfhhxn1dqgph2vzqyq7l52cdk5iq2a2zy1vh176yg")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) @@ -698,13 +819,13 @@ high-dimensional data.") (define-public r-shadowtext (package (name "r-shadowtext") - (version "0.0.7") + (version "0.0.8") (source (origin (method url-fetch) (uri (cran-uri "shadowtext" version)) (sha256 (base32 - "1s1ip8zfr684a3ld7hvf524bhn2j31k6d1wbhh1ni0flsggv2ckf")))) + "16lhhd7q1qz82grkq1q4fn5mkq8nphh4wvva4jijrl605cd6cc7v")))) (properties `((upstream-name . "shadowtext"))) (build-system r-build-system) (propagated-inputs @@ -826,14 +947,14 @@ data types as well.") (define-public r-tidyverse (package (name "r-tidyverse") - (version "1.3.0") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "tidyverse" version)) (sha256 (base32 - "02gyys08qv2v4cl2d66gml4d31ipxay0iyfwwksvxyclx60wp2kd")))) + "0ck6xmsw5p168jmw2fqv79fzfnw5jckfra7mfii261j6kl89bkw3")))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) @@ -841,8 +962,11 @@ data types as well.") ("r-crayon" ,r-crayon) ("r-dbplyr" ,r-dbplyr) ("r-dplyr" ,r-dplyr) + ("r-dtplyr" ,r-dtplyr) ("r-forcats" ,r-forcats) ("r-ggplot2" ,r-ggplot2) + ("r-googledrive" ,r-googledrive) + ("r-googlesheets4" ,r-googlesheets4) ("r-haven" ,r-haven) ("r-hms" ,r-hms) ("r-httr" ,r-httr) @@ -862,6 +986,8 @@ data types as well.") ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) ("r-xml2" ,r-xml2))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://tidyverse.tidyverse.org") (synopsis "Install and load packages from the \"Tidyverse\"") (description @@ -984,14 +1110,14 @@ same time tries to group instances from the same class together.") (define-public r-callr (package (name "r-callr") - (version "3.6.0") + (version "3.7.0") (source (origin (method url-fetch) (uri (cran-uri "callr" version)) (sha256 (base32 - "050s7l1ipi6snbj6xnk052l6acycnxjyzv84026adw5x8kki0yz6")))) + "02inaf3c7b0hikii7p2zwaphrq5myv4in92d9jxd1ilmhla5awnn")))) (build-system r-build-system) (propagated-inputs `(("r-r6" ,r-r6) @@ -1081,13 +1207,13 @@ models.") (define-public r-httpuv (package (name "r-httpuv") - (version "1.5.5") + (version "1.6.0") (source (origin (method url-fetch) (uri (cran-uri "httpuv" version)) (sha256 (base32 - "05rir03xwamwfq5691vx0x957sgmr4i8iv5vpx5rv1f74y4wkrhb")) + "01i0x9234fsyinzfjyl9a807kyvb0nivr6jx9911fp0msdmy1vkm")) ;; Unvendor bundled libraries. As of 1.5.4 the vendored libuv ;; only contains fixes for building on Solaris. (patches (search-patches "r-httpuv-1.5.5-unvendor-libuv.patch")) @@ -1115,8 +1241,7 @@ models.") (inputs `(("libuv" ,libuv))) (propagated-inputs - `(("r-bh" ,r-bh) - ("r-later" ,r-later) + `(("r-later" ,r-later) ("r-promises" ,r-promises) ("r-r6" ,r-r6) ("r-rcpp" ,r-rcpp))) @@ -1161,13 +1286,13 @@ in systems and applications.") (define-public r-servr (package (name "r-servr") - (version "0.21") + (version "0.22") (source (origin (method url-fetch) (uri (cran-uri "servr" version)) (sha256 (base32 - "12fk585hmz735v4hra8da9wld1fmd67byqnf95m7jjyh7l3dmh1z")))) + "1vnlkbf8s55rfgz7qp2dd84pf9zw94qmdx25rl6i7jybhsxmb71h")))) (build-system r-build-system) (propagated-inputs `(("r-httpuv" ,r-httpuv) @@ -1265,13 +1390,13 @@ LaTeX.") (define-public r-curl (package (name "r-curl") - (version "4.3") + (version "4.3.1") (source (origin (method url-fetch) (uri (cran-uri "curl" version)) (sha256 (base32 - "1nrf6md41b37j424y6rvifdj9zb3j14f60fj7q71k9jhpf2x81kl")))) + "0qpzbzd5xvihqvp9akkvd8237i1lmphmm5q8a4cj3wfx382cnri2")))) (build-system r-build-system) (arguments `(#:phases @@ -1289,13 +1414,13 @@ LaTeX.") (string-append "\ const char *_ca_bundle = getenv(\"CURL_CA_BUNDLE\"); if(_ca_bundle != NULL) { curl_easy_setopt(handle, CURLOPT_CAINFO, _ca_bundle); } -" m))) - #t))))) +" m)))))))) (inputs `(("libcurl" ,curl) ("zlib" ,zlib))) (native-inputs - `(("pkg-config" ,pkg-config))) + `(("pkg-config" ,pkg-config) + ("r-knitr" ,r-knitr))) (home-page "https://github.com/jeroenooms/curl") (synopsis "HTTP client for R") (description @@ -1430,19 +1555,19 @@ multi-state models.") (define-public r-jquerylib (package (name "r-jquerylib") - (version "0.1.3") + (version "0.1.4") (source (origin (method url-fetch) (uri (cran-uri "jquerylib" version)) (sha256 (base32 - "1s0d6mws13hwkx07jqmry7vp30a05b2p9w7ir68bmkhasidwkzdq")) + "04a40v4znpj98j7y6009d74a6g9dchj5rr3p08cgz9p3rlfw3g7h")) (snippet '(for-each delete-file - '("inst/lib/jquery-1.12.4.min.js" - "inst/lib/jquery-2.2.4.min.js" - "inst/lib/jquery-3.5.1.min.js"))))) + '("inst/lib/1.12.4/jquery-1.12.4.min.js" + "inst/lib/2.2.4/jquery-2.2.4.min.js" + "inst/lib/3.6.0/jquery-3.6.0.min.js"))))) (properties `((upstream-name . "jquerylib"))) (build-system r-build-system) (arguments @@ -1457,12 +1582,12 @@ multi-state models.") (call-with-values (lambda () (unzip2 - `(("jquery-1.12.4.js" - "jquery-1.12.4.min.js") - ("jquery-2.2.4.js" - "jquery-2.2.4.min.js") - ("jquery-3.5.1.js" - "jquery-3.5.1.min.js")))) + `(("1.12.4/jquery-1.12.4.js" + "1.12.4/jquery-1.12.4.min.js") + ("2.2.4/jquery-2.2.4.js" + "2.2.4/jquery-2.2.4.min.js") + ("3.6.0/jquery-3.6.0.js" + "3.6.0/jquery-3.6.0.min.js")))) (lambda (sources targets) (for-each (lambda (source target) (format #t "Processing ~a --> ~a~%" @@ -2406,14 +2531,14 @@ including functions for geolocation and routing.") (define-public r-haven (package (name "r-haven") - (version "2.3.1") + (version "2.4.1") (source (origin (method url-fetch) (uri (cran-uri "haven" version)) (sha256 (base32 - "03cypgqhdkrfbfpl1yx2wb7flczrbak1w654wkicmd5ajwr9zvkf")) + "1san6dc7kg2wy6f1jr5p1br28zdrand8wwgg7p6xxnx45h773320")) (modules '((guix build utils))) (snippet '(begin @@ -2435,9 +2560,9 @@ including functions for geolocation and routing.") (native-inputs `(("r-knitr" ,r-knitr))) (propagated-inputs - `(("r-forcats" ,r-forcats) + `(("r-cpp11" ,r-cpp11) + ("r-forcats" ,r-forcats) ("r-hms" ,r-hms) - ("r-rcpp" ,r-rcpp) ("r-rlang" ,r-rlang) ("r-readr" ,r-readr) ("r-tibble" ,r-tibble) @@ -2472,14 +2597,14 @@ component analysis (with robust methods, and parallelized functions).") (define-public r-ape (package (name "r-ape") - (version "5.4-1") + (version "5.5") (source (origin (method url-fetch) (uri (cran-uri "ape" version)) (sha256 (base32 - "1r7fwyz30ippcl1ibqiv1xryf44x5crcks5kx19h146ffj76qcgh")))) + "16i9sny7j90zi0k3znfff5lpnj5naxcy1142v73zxslr9g3h3am3")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) @@ -2746,20 +2871,19 @@ is configured appropriately so R can use them.") (define-public r-pkgload (package (name "r-pkgload") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "pkgload" version)) (sha256 (base32 - "185xr79z2vncq62bni7x4qv3p7dxvnfsbdnnglma0a196hz6pj7v")))) + "0ghpkv0p0xz4gpm49sywhvahhzwdakfb5kqm6yz8s1fr5gdpy9z6")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) ("r-crayon" ,r-crayon) ("r-desc" ,r-desc) - ("r-pkgbuild" ,r-pkgbuild) ("r-rlang" ,r-rlang) ("r-rprojroot" ,r-rprojroot) ("r-rstudioapi" ,r-rstudioapi) @@ -3551,13 +3675,13 @@ and S4 methods with inlined C, C++ or Fortran code supporting @code{.C} and (define-public r-inum (package (name "r-inum") - (version "1.0-3") + (version "1.0-4") (source (origin (method url-fetch) (uri (cran-uri "inum" version)) (sha256 (base32 - "1sz11b4vlpskhmq9vvc1jix63a5g7lij6368w8qbnkjmjd97k7i4")))) + "1khkzja8lwn9075864vbyajqina9m588ahf1fsrrajrsqilyzssz")))) (build-system r-build-system) (propagated-inputs `(("r-libcoin" ,r-libcoin))) @@ -4335,17 +4459,18 @@ provides a one-row summary of model-level statistics.") (define-public r-recipes (package (name "r-recipes") - (version "0.1.15") + (version "0.1.16") (source (origin (method url-fetch) (uri (cran-uri "recipes" version)) (sha256 (base32 - "0xif0ak3w90xmfzlxvb5pnzc3scpfl1pyhrjffi3mq4asvsd52l0")))) + "1mayfdbn6q775d4gbdjrrhdbmpsxga57kwh0h7bwv8rk0vmvik23")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) + ("r-ellipsis" ,r-ellipsis) ("r-generics" ,r-generics) ("r-glue" ,r-glue) ("r-gower" ,r-gower) @@ -4710,14 +4835,14 @@ programming} (SQP) based solver).") (define-public r-hardyweinberg (package (name "r-hardyweinberg") - (version "1.7.1") + (version "1.7.2") (source (origin (method url-fetch) (uri (cran-uri "HardyWeinberg" version)) (sha256 (base32 - "0afjz818yvaq3akvgpy4irnlpspd2dj71qkrwj81lm9y36ypwlw6")))) + "0g10jh71yp0pcag44z409xqb6d941l7y887a632962bk5rgn6q5p")))) (properties `((upstream-name . "HardyWeinberg"))) (build-system r-build-system) (propagated-inputs @@ -5070,14 +5195,14 @@ plots in @code{ggplot2}.") (define-public r-cli (package (name "r-cli") - (version "2.4.0") + (version "2.5.0") (source (origin (method url-fetch) (uri (cran-uri "cli" version)) (sha256 (base32 - "0l1s9yv23bc7mm0hfdlamgz4wjfrisv8aylr65ihjs98jsynrkg3")))) + "174dnlcl0i21rbs0z4as0v9iic60bs4z88152ibjljva0nzdyrsh")))) (build-system r-build-system) (propagated-inputs `(("r-glue" ,r-glue))) @@ -5132,13 +5257,13 @@ constants, and control debugging of packages via environment variables.") (define-public r-processx (package (name "r-processx") - (version "3.5.1") + (version "3.5.2") (source (origin (method url-fetch) (uri (cran-uri "processx" version)) (sha256 - (base32 "1z7zag7g041xlhzhkdfl33y2phc877h1pwj9k69p69b967qi6p6k")))) + (base32 "0azw8sx6nv6pp8m8jrwq01b9na2swrnznn7dwrhn07268w82svzd")))) (build-system r-build-system) (propagated-inputs `(("r-ps" ,r-ps) @@ -5344,14 +5469,14 @@ to variables on the left-hand side of the assignment.") (define-public r-vctrs (package (name "r-vctrs") - (version "0.3.7") + (version "0.3.8") (source (origin (method url-fetch) (uri (cran-uri "vctrs" version)) (sha256 (base32 - "03hyxk3x635xfdn2x707gygdb2xk0cayl1nl44zib9bwqyyb7nas")))) + "1c8v5lmap6iq4jpi7p3w05hsv2dq7rjg057pvnfyc5d1xmsqnkkz")))) (build-system r-build-system) (propagated-inputs `(("r-ellipsis" ,r-ellipsis) @@ -5382,14 +5507,14 @@ to variables on the left-hand side of the assignment.") (define-public r-pillar (package (name "r-pillar") - (version "1.5.1") + (version "1.6.0") (source (origin (method url-fetch) (uri (cran-uri "pillar" version)) (sha256 (base32 - "0wp68cg95895aybi7yjqy0sidvc68lmfqndinpd63dysci9x3r8c")))) + "1pfa6q63ji6mqsvkbpjvvlaivw66nyinwbk82jh0a0c6dy41w47i")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -6749,14 +6874,14 @@ and Eclat.") (define-public r-parsedate (package (name "r-parsedate") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "parsedate" version)) (sha256 (base32 - "0gb3w6hmwxayhijpf36p5dk4h6bbdps57x3cgikwvvxkgi83rarr")))) + "05l6f1n3dsm383w7jfg3j38klvmzzfvc7qi9zr5ij13rljj8s1vb")))) (build-system r-build-system) (propagated-inputs `(("r-rematch2" ,r-rematch2))) @@ -6935,18 +7060,17 @@ exchanging spatial objects with other R packages.") (define-public r-later (package (name "r-later") - (version "1.1.0.1") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "later" version)) (sha256 (base32 - "1k9n2j7zxw9gfclnx8zfqp6w64c5d6apn7g02yhkajkpmszagfki")))) + "00f4n1b2ykrs2cd61pypa4d00ydx9hqq2c1a1p8psa2yym6979bm")))) (build-system r-build-system) (propagated-inputs - `(("r-bh" ,r-bh) - ("r-rcpp" ,r-rcpp) + `(("r-rcpp" ,r-rcpp) ("r-rlang" ,r-rlang))) (native-inputs `(("r-knitr" ,r-knitr))) @@ -7176,6 +7300,41 @@ data.frame and more. This is useful for decision trees, machine learning, finance, conversion from and to JSON, and many other applications.") (license license:gpl2+))) +(define-public r-dtplyr + (package + (name "r-dtplyr") + (version "1.1.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "dtplyr" version)) + (sha256 + (base32 + "0cn7vxn92dcxrnabccla6ppf5x7pxfz6pjlmamp0imfphmr1ns4r")))) + (properties `((upstream-name . "dtplyr"))) + (build-system r-build-system) + (propagated-inputs + `(("r-crayon" ,r-crayon) + ("r-data-table" ,r-data-table) + ("r-dplyr" ,r-dplyr) + ("r-ellipsis" ,r-ellipsis) + ("r-glue" ,r-glue) + ("r-lifecycle" ,r-lifecycle) + ("r-rlang" ,r-rlang) + ("r-tibble" ,r-tibble) + ("r-tidyselect" ,r-tidyselect) + ("r-vctrs" ,r-vctrs))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/tidyverse/dtplyr") + (synopsis "Data Table back-end for dplyr") + (description + "This package provides a @code{data.table} backend for @code{dplyr}. The +goal of @code{dtplyr} is to allow you to write @code{dplyr} code that is +automatically translated to the equivalent, but usually much faster, +@code{data.table} code.") + (license license:expat))) + (define-public r-collapsibletree (package (name "r-collapsibletree") @@ -7251,14 +7410,14 @@ Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.") (define-public r-rastervis (package (name "r-rastervis") - (version "0.50.1") + (version "0.50.2") (source (origin (method url-fetch) (uri (cran-uri "rasterVis" version)) (sha256 (base32 - "1fkmyllydnmk3j2cmgf86r91wyxf2kh573x8bkck7wgkfniw4h7w")))) + "0fl766wx5jz8ylpd28czkvl32pk1s57nbfsn8kxrwfvx5cfnfkxr")))) (properties `((upstream-name . "rasterVis"))) (build-system r-build-system) (propagated-inputs @@ -7405,21 +7564,23 @@ obtain a better initial configuration in non-metric MDS.") (define-public r-reticulate (package (name "r-reticulate") - (version "1.18") + (version "1.20") (source (origin (method url-fetch) (uri (cran-uri "reticulate" version)) (sha256 (base32 - "04w5c9jfxakb4rr2qjynxgagb42khsja3y4dwgxywiplb1d8agxk")))) + "0ay8cb0d3lj702aw338lkc7sxj9j05izji3waww1z0lph16406bh")))) (build-system r-build-system) (inputs `(("python" ,python))) (propagated-inputs `(("r-rappdirs" ,r-rappdirs) ("r-jsonlite" ,r-jsonlite) ("r-matrix" ,r-matrix) - ("r-rcpp" ,r-rcpp))) + ("r-png" ,r-png) + ("r-rcpp" ,r-rcpp) + ("r-withr" ,r-withr))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/rstudio/reticulate") @@ -7881,14 +8042,14 @@ hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.") (define-public r-rbibutils (package (name "r-rbibutils") - (version "2.1") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "rbibutils" version)) (sha256 (base32 - "13phw0dk3p3s1z45ff7dbqnn27zws1209mp3d4763zh7xnsdsl44")))) + "0vk8pc9nsf28jxlb2vv1kydqfnvlh7q4kd2wyva4mwhl51s36bpl")))) (properties `((upstream-name . "rbibutils"))) (build-system r-build-system) (home-page "https://geobosh.github.io/rbibutils/") @@ -7984,14 +8145,14 @@ on the methods that are implemented can be found in Kosmidis (2008) (define-public r-brglm (package (name "r-brglm") - (version "0.7.1") + (version "0.7.2") (source (origin (method url-fetch) (uri (cran-uri "brglm" version)) (sha256 (base32 - "1v68ma1agwhxar76mfvdfkcnd5h4gmxiz8j491rhdsckg271j7sa")))) + "08shcz0j1npdn7xkhsvlzs3z4rdwq3g4rk6a4xx8wirqw8n8s2an")))) (properties `((upstream-name . "brglm"))) (build-system r-build-system) (propagated-inputs @@ -8015,14 +8176,14 @@ reduced-bias estimates.") (define-public r-entropy (package (name "r-entropy") - (version "1.2.1") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "entropy" version)) (sha256 (base32 - "10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd")))) + "0fhhsy8ci9c73xwr2b167dfix0b7kqsk6kf46qqv1lmvbv11vxqa")))) (properties `((upstream-name . "entropy"))) (build-system r-build-system) (home-page "https://www.strimmerlab.org/software/entropy/") @@ -8037,41 +8198,6 @@ mutual information, and chi-squared statistic of independence. In addition there are functions for discretizing continuous random variables.") (license license:gpl3+))) -(define-public r-abn - (package - (name "r-abn") - (version "2.3-0") - (source - (origin - (method url-fetch) - (uri (cran-uri "abn" version)) - (sha256 - (base32 - "17vdrqm6qp5aijg00ah2imj3pqr6cl5r43hgg8dijbrbhznarci6")))) - (build-system r-build-system) - (inputs - `(("gsl" ,gsl))) - (propagated-inputs - `(("r-lme4" ,r-lme4) - ("r-nnet" ,r-nnet) - ("r-rcpp" ,r-rcpp) - ("r-rcpparmadillo" ,r-rcpparmadillo) - ("r-rjags" ,r-rjags))) - (home-page "https://r-bayesian-networks.org/") - (synopsis "Modelling multivariate data with additive bayesian networks") - (description - "Bayesian network analysis is a form of probabilistic graphical models -which derives from empirical data a directed acyclic graph, DAG, describing -the dependency structure between random variables. An additive Bayesian -network model consists of a form of a DAG where each node comprises a -@dfn{generalized linear model} (GLM). Additive Bayesian network models are -equivalent to Bayesian multivariate regression using graphical modelling, they -generalises the usual multivariable regression, GLM, to multiple dependent -variables. This package provides routines to help determine optimal Bayesian -network models for a given data set, where these models are used to identify -statistical dependencies in messy, complex data.") - (license license:gpl2+))) - (define-public r-acd (package (name "r-acd") @@ -8326,14 +8452,14 @@ functions.") (define-public r-flextable (package (name "r-flextable") - (version "0.6.4") + (version "0.6.5") (source (origin (method url-fetch) (uri (cran-uri "flextable" version)) (sha256 (base32 - "1ykjfnqhn8nd9f3l4jj8hf1bbjjckkna3p7fdsg0a73c05a17yma")))) + "1njk4kc19r2n2awxjfz4svf1pivxhn12r9dqsdvbdpbfl5wmvxzl")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -8361,14 +8487,14 @@ documents.") (define-public r-writexl (package (name "r-writexl") - (version "1.3.1") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "writexl" version)) (sha256 (base32 - "1njdhvh8605wd2j8glrbxfyc36p2n88prpq080jn44s9lgfmbgsb")))) + "0mfzyn8n5x5x5gf382bqgq61zpw9dymrp5kzdm2sbszplmxf6xry")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) (home-page "https://github.com/ropensci/writexl") @@ -8574,24 +8700,26 @@ the work.") (define-public r-doby (package (name "r-doby") - (version "4.6.9") + (version "4.6.10") (source (origin (method url-fetch) (uri (cran-uri "doBy" version)) (sha256 (base32 - "02f545md5yhbpp3wb3q2c8zabqwgf02555r5c6g7znab5zjbyr00")))) + "0vqmmxhr3mx8yyl38abvy0zqswfgn7jqgwvc5gdchdiq6v8flnfr")))) (properties `((upstream-name . "doBy"))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) + ("r-curry" ,r-curry) ("r-deriv" ,r-deriv) ("r-dplyr" ,r-dplyr) ("r-ggplot2" ,r-ggplot2) ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) ("r-matrix" ,r-matrix) + ("r-microbenchmark" ,r-microbenchmark) ("r-pbkrtest" ,r-pbkrtest) ("r-tibble" ,r-tibble))) (native-inputs @@ -9092,14 +9220,14 @@ used to teach mathematics, statistics, computation and modeling.") (define-public r-raster (package (name "r-raster") - (version "3.4-5") + (version "3.4-10") (source (origin (method url-fetch) (uri (cran-uri "raster" version)) (sha256 (base32 - "19g4chd0nyhnz6hc2j0v9ahjcgz64vvja4y3mrj1pfis1dwhsqn6")))) + "1x9d364r6wsm261a0s303mfalk79d4h0lwqlvbwzg7khmz991rlr")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) @@ -9179,15 +9307,17 @@ biological data by Michael Whitlock and Dolph Schluter.") (define-public r-svgui (package (name "r-svgui") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "svGUI" version)) (sha256 - (base32 "1r7ab0p4yr8q03gj02hmj7k1ghksgkg4nx750c0ajfs2q9y1dxfc")))) + (base32 "0ch5gdfk834xj9w3vxpm3x4770fz3nnlyn8b0jsw9f3n2as7g979")))) (properties `((upstream-name . "svGUI"))) (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/SciViews/svGUI/") (synopsis "Functions for managing GUI clients in R") (description @@ -9200,13 +9330,13 @@ calls to the particular toolkits in use in function of the context.") (define-public r-svdialogs (package (name "r-svdialogs") - (version "1.0.0") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "svDialogs" version)) (sha256 - (base32 "0xqppydfawnwk84kb5qiybwbcmv38vn4imgz01mz2pnq4xb80p97")))) + (base32 "0j00xjvkwv992ir48czhvyj29rb9vpd243vbyyj2binn0q0qa431")))) (properties `((upstream-name . "svDialogs"))) (build-system r-build-system) (inputs @@ -9215,6 +9345,8 @@ calls to the particular toolkits in use in function of the context.") (propagated-inputs `(("r-rstudioapi" ,r-rstudioapi) ("r-svgui" ,r-svgui))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/SciViews/svDialogs/") (synopsis "Portable dialog boxes") (description @@ -9687,14 +9819,14 @@ samples is large and the number of mixture components is not too large.") (define-public r-magick (package (name "r-magick") - (version "2.7.1") + (version "2.7.2") (source (origin (method url-fetch) (uri (cran-uri "magick" version)) (sha256 (base32 - "16svy84dq25g69axqgympsrh8dzssa1w3zz08zc8m6nprr3jqwqf")))) + "1ckp85wk9lj6jjm92ww4mg1r4h4zm2cm68y6fyb1hz4mr3nihmji")))) (build-system r-build-system) (inputs `(("imagemagick" ,imagemagick) @@ -10101,14 +10233,14 @@ packages maintained by Torsten Hothorn.") (define-public r-multcomp (package (name "r-multcomp") - (version "1.4-16") + (version "1.4-17") (source (origin (method url-fetch) (uri (cran-uri "multcomp" version)) (sha256 (base32 - "1s8qmljawalisggniy7va5l5cicsgvs0lp20c33vxlvyiy0dbb1s")))) + "02zv739mbmx672yrqqx8am229h7ps476wphig7jrrbfgay29sl21")))) (build-system r-build-system) (propagated-inputs `(("r-codetools" ,r-codetools) @@ -10129,14 +10261,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.5.5-1") + (version "1.6.0") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "0l5dd71ihhs7zy6ygniy07iisgy7a1ai1w41hqf84swb0j3cl6iz")))) + "07iw3faprf98mncymbjbmfm2yi294yiwdg30xlql5sfx12qbf6r0")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) @@ -10262,14 +10394,14 @@ Bayesian modeling.") (define-public r-tmb (package (name "r-tmb") - (version "1.7.19") + (version "1.7.20") (source (origin (method url-fetch) (uri (cran-uri "TMB" version)) (sha256 (base32 - "0vnjh8d5gnjswil8ld3gbbspy4m5l2pzar1mpj62qxn2mwx0cc4s")))) + "14wapc8bicr4j7mmrv1hrsw407lsbr7l4cfvy3j9sfjdbrq31a37")))) (properties `((upstream-name . "TMB"))) (build-system r-build-system) (propagated-inputs @@ -10365,14 +10497,14 @@ differentiation.") (define-public r-bayestestr (package (name "r-bayestestr") - (version "0.8.2") + (version "0.9.0") (source (origin (method url-fetch) (uri (cran-uri "bayestestR" version)) (sha256 (base32 - "06y7vccgln1882yv04may9p6s915py8nnhg82d5ppbpxzcifi7l4")))) + "0msr24ymnazpaz8s9qs5v3xn1i9984p98lr9x4qq9cxgx34rm9h0")))) (properties `((upstream-name . "bayestestR"))) (build-system r-build-system) (propagated-inputs @@ -10392,14 +10524,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.7.0") + (version "0.7.1") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "1z45vy8gg77c2imcspwqf94anzi6c40wwbq0h7hg6zy76jsgvbyj")))) + "1kf8z7lrjv1bg8mqb7sq4651k2xg3d02azq7gr0jc4c52cr2yaqm")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) @@ -10419,14 +10551,14 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "1.0.2") + (version "1.1.0") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "0qh8x8yi8gkb5x7zfxmb1c689k7bhc1f5947yymny34j7xdsb9s8")))) + "1qb9d7nfs1hkgxhr6pkdrxxx7f8ar8g3si95bsm7wgl94xf2d8di")))) (build-system r-build-system) (propagated-inputs `(("r-insight" ,r-insight) @@ -10566,14 +10698,14 @@ repositories.") (define-public r-gh (package (name "r-gh") - (version "1.2.1") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "gh" version)) (sha256 (base32 - "16xa1qb1r28f8yc6ybjrxiq2zigxj886dp9k29jpsn5091xbzkq0")))) + "077drbxz3rx7idv6w24ipj1p6jnzv86a3iyryab699cc9q2kjh54")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -11244,14 +11376,14 @@ package provides a minimal R interface by relying on the Rcpp package.") (define-public r-rcppparallel (package (name "r-rcppparallel") - (version "5.0.3") + (version "5.1.3") (source (origin (method url-fetch) (uri (cran-uri "RcppParallel" version)) (sha256 (base32 - "0ihcirny4al2ydymxhdfacwmybmrgrz5nm0lbf49gk2zy8w124ki")))) + "1c3y80m695xqhs4ynwig2bsl045nryi9ww0a1s2rb3gsjbs5vx7v")))) (properties `((upstream-name . "RcppParallel"))) (build-system r-build-system) (home-page "https://rcppcore.github.io/RcppParallel/") @@ -11315,14 +11447,14 @@ Bioconductor packages.") (define-public r-rgl (package (name "r-rgl") - (version "0.105.22") + (version "0.106.8") (source (origin (method url-fetch) (uri (cran-uri "rgl" version)) (sha256 (base32 - "1y69phym8pkdh1k808y3rp1030xmhjpc8vig9035v9n1r7v7a1kz")))) + "0m1zvbmw81za680zq7h4agxr88pi7h5hz812r45vzmgc7hlw4apw")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -11536,14 +11668,14 @@ circular variables).") (define-public r-ouch (package (name "r-ouch") - (version "2.15-1") + (version "2.16") (source (origin (method url-fetch) (uri (cran-uri "ouch" version)) (sha256 (base32 - "0myddn3b28pswyk42kvwhyvkj30q41f677vpxclxacdfkhgvrj6q")))) + "17y7qksp9v4jkr4h1psg14y3ridwhi4mgkfm0a02paabhwjc8d96")))) (build-system r-build-system) (propagated-inputs `(("r-subplex" ,r-subplex))) (home-page "https://kingaa.github.io/ouch/") @@ -12729,14 +12861,14 @@ limitations\" using the GNU Multiple Precision library.") (define-public r-rmpfr (package (name "r-rmpfr") - (version "0.8-3") + (version "0.8-4") (source (origin (method url-fetch) (uri (cran-uri "Rmpfr" version)) (sha256 (base32 - "1m9wwwch9wg886147brr2zfih65yfdfs3vmfvim1w6jykycasc9a")))) + "0xaqbgkpnjg53zcp56c59cz5dh3jvvwqnzvyxqzy77c6yvkwy3hx")))) (properties `((upstream-name . "Rmpfr"))) (build-system r-build-system) (inputs @@ -13666,6 +13798,11 @@ by change of variable.") (base32 "0ps8bk7zlhbviawrw7vw25skjq81hkk3ijyi6g74dmfqy8zsyapx")))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) (native-inputs `(("r-r-rsp" ,r-r-rsp))) ; vignette builder (home-page "https://github.com/HenrikBengtsson/listenv") @@ -13704,14 +13841,14 @@ them in distributed compute environments.") (define-public r-parallelly (package (name "r-parallelly") - (version "1.24.0") + (version "1.25.0") (source (origin (method url-fetch) (uri (cran-uri "parallelly" version)) (sha256 (base32 - "1x04pxcyyzmg1rl9mcd7mmxglzmxgy40fmbwpy7vf5y7z15rzrp6")))) + "0adcyd8da25q3z8b9wgia4kzjm7mxrjwjs68gxc5ljw1ib0prjwi")))) (properties `((upstream-name . "parallelly"))) (build-system r-build-system) (home-page "https://github.com/HenrikBengtsson/parallelly") @@ -13741,6 +13878,11 @@ port-forwarding to your local computer.") (base32 "0bfiy17n5rghxw0702k0vgpjkk13268lniifdlx59flf0q16d7lh")))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs `(("r-digest" ,r-digest) ("r-globals" ,r-globals) @@ -13775,6 +13917,11 @@ the local machine to, say, distributed processing on a remote compute cluster.") "1ns5cf80vyabvyz9qp6kpvkg4jycinn7x6v7x6692fgjapdnmyig")))) (properties `((upstream-name . "future.apply"))) (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'set-HOME + (lambda _ (setenv "HOME" "/tmp")))))) (propagated-inputs `(("r-future" ,r-future) ("r-globals" ,r-globals))) @@ -13793,14 +13940,14 @@ machine or distributed on a compute cluster.") (define-public r-rsvd (package (name "r-rsvd") - (version "1.0.3") + (version "1.0.5") (source (origin (method url-fetch) (uri (cran-uri "rsvd" version)) (sha256 (base32 - "1fvrw46fl5xb2akaa4mp8nja4h7nn4bdhnjdrk22fsdfqc7hwmhk")))) + "07p2hjmpcwcsang8z9sjkpy94rydcin7m3hyvcgzgm5cd6w8c1p4")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) @@ -15420,13 +15567,13 @@ also provided to illustrate various methods.") (define-public r-pegas (package (name "r-pegas") - (version "0.14") + (version "1.0") (source (origin (method url-fetch) (uri (cran-uri "pegas" version)) (sha256 - (base32 "0lr06gajzdanj8ax91kgpxsj863m367v2s1z5gnxps3999n0xybx")))) + (base32 "0nbdcrpha2r50gp0nymr4lqmqhd4237rzz6ank8cqdhl7lcsz69v")))) (build-system r-build-system) (propagated-inputs `(("r-adegenet" ,r-adegenet) @@ -15799,13 +15946,13 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.21") + (version "0.22") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "0xms1srx9l2mn8xaxnpic0s21y8k56bhwpj45wy7b0yscmxgmh27")))) + "0j80wm36mw3f14ncfwm6xx09wff1kswfiv8b309x9y0f9r46dr0z")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -15815,6 +15962,11 @@ SELECT or UPDATE queries to an end-point.") ("r-xfun" ,r-xfun) ("r-yaml" ,r-yaml) ("pandoc" ,pandoc))) + ;; We cannot add knitr because this package depends on xfun, which is an + ;; input to knitr. + #; + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/rstudio/bookdown") (synopsis "Authoring books and technical documents with R markdown") (description "This package provides output formats and utilities for @@ -15967,14 +16119,14 @@ the corresponding outputs (tables and graphs).") (define-public r-rjava (package (name "r-rjava") - (version "0.9-13") + (version "1.0-4") (source (origin (method url-fetch) (uri (cran-uri "rJava" version)) (sha256 (base32 - "1x3mihyqzr61j52rwaqciw43mkjzmhib4s6qf57v6xj40ksqh5jv")))) + "1rd9hcwp4464icy22mmis94jb9w5gk90h97j79cy6fixdxwq4ihx")))) (properties `((upstream-name . "rJava"))) (build-system r-build-system) (arguments @@ -16001,7 +16153,6 @@ the corresponding outputs (tables and graphs).") (inputs `(("icu4c" ,icu4c) ("jdk" ,icedtea-8 "jdk") - ("pcre" ,pcre) ("zlib" ,zlib))) (home-page "https://www.rforge.net/rJava/") (synopsis "Low-Level R to Java interface") @@ -16014,16 +16165,18 @@ and accessing fields.") (define-public r-svmisc (package (name "r-svmisc") - (version "1.1.0") + (version "1.1.4") (source (origin (method url-fetch) (uri (cran-uri "svMisc" version)) (sha256 (base32 - "01r2a73wx2sh1njky961fxabx5wgddqqjqba6vjg0f3h8r3abmn2")))) + "0y8mhiblyzwads4gf4whmxi7c6wdmqs3ahbj132l79bbdk40p83a")))) (properties `((upstream-name . "svMisc"))) (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/SciViews/svMisc") (synopsis "Miscellaneous functions for SciViews") (description @@ -16240,14 +16393,14 @@ package.") (define-public r-ggplotify (package (name "r-ggplotify") - (version "0.0.5") + (version "0.0.6") (source (origin (method url-fetch) (uri (cran-uri "ggplotify" version)) (sha256 (base32 - "0pfnp4lrissf21z7867kdm6slr979kchyva8iaf83i1302kscph3")))) + "1xs9l05hzlrgcr0p0xah2b05fbm64ma3vfwzn4p8q6nj7xch1dbd")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -17338,14 +17491,14 @@ experiments in a well-organized and reproducible way.") (define-public r-clue (package (name "r-clue") - (version "0.3-58") + (version "0.3-59") (source (origin (method url-fetch) (uri (cran-uri "clue" version)) (sha256 (base32 - "1rwwxlnpl1k0n4k96vxc9zajw9kb4syqwzj76fvaf0qim8p6ddia")))) + "0ychvjbqkcgqdp5gy4hsi4297phywd7fj89y3yi5ckmnmjb39kjm")))) (build-system r-build-system) (propagated-inputs `(("r-cluster" ,r-cluster))) (home-page "https://cran.r-project.org/web/packages/clue/") @@ -17383,19 +17536,21 @@ dimensional low-discrepancy sequence.") (define-public r-dqrng (package (name "r-dqrng") - (version "0.2.1") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "dqrng" version)) (sha256 (base32 - "0rp8q5zijlvaqmpnkwr314w9w40sj4fz7sqsdgsffcfvn42w2jg1")))) + "1fwsldqcri2lccna4icbmmlqic3w4xyjm7rn0xmikrsw4kzapvjb")))) (build-system r-build-system) (propagated-inputs `(("r-bh" ,r-bh) ("r-rcpp" ,r-rcpp) ("r-sitmo" ,r-sitmo))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://www.daqana.org/dqrng") (synopsis "Fast pseudo random number generators") (description @@ -17415,14 +17570,14 @@ engine (Salmon et al., 2011) as provided by the package @code{sitmo}.") (define-public r-ingredients (package (name "r-ingredients") - (version "2.0.1") + (version "2.2.0") (source (origin (method url-fetch) (uri (cran-uri "ingredients" version)) (sha256 (base32 - "0w46h1f28y5ypqm3ypsvk7yk9v7k8p21f1pzjl3ima8r1ivmhv12")))) + "11bv4l4fn9kr7y2nfzrwnaya8fi9w3nwcm9vzlqb7dva83rkqbsc")))) (properties `((upstream-name . "ingredients"))) (build-system r-build-system) (propagated-inputs @@ -17695,17 +17850,18 @@ the current document.") (define-public r-xgboost (package (name "r-xgboost") - (version "1.3.2.1") + (version "1.4.1.1") (source (origin (method url-fetch) (uri (cran-uri "xgboost" version)) (sha256 (base32 - "117q8xqm82589517fi8xicd8724v9c0wnq3qpl84h6nm3aw65x1g")))) + "1i706h6yhayzbqlqa1z6fgjc56kxm3isz0jw6d26fpyfjlw6z64z")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table) + ("r-jsonlite" ,r-jsonlite) ("r-magrittr" ,r-magrittr) ("r-matrix" ,r-matrix))) (native-inputs @@ -18176,14 +18332,14 @@ emphasize hidden group structures in networks or focus on specific nodes.") (define-public r-terra (package (name "r-terra") - (version "1.1-4") + (version "1.2-5") (source (origin (method url-fetch) (uri (cran-uri "terra" version)) (sha256 (base32 - "1vsh55sq56shc8s2vmkl27yvrdbrbn3l6jrigqf2hmvppkb2jsbg")))) + "0wmrb75y271xdx781xql0dx702ghnj4d2i2zr9375kqjbwgx9nad")))) (properties `((upstream-name . "terra"))) (build-system r-build-system) (inputs @@ -18301,14 +18457,14 @@ in pipelines.") (define-public r-parameters (package (name "r-parameters") - (version "0.12.0") + (version "0.13.0") (source (origin (method url-fetch) (uri (cran-uri "parameters" version)) (sha256 (base32 - "0dfqn4l4qmlpwmdva2ahyhlngkzdm0sgiirbdrf3mbbw52bhlmpm")))) + "17dlwx9hrl6z2il14nxji0snwsf4sfbp3mv33jbpcw13sani1q81")))) (properties `((upstream-name . "parameters"))) (build-system r-build-system) (propagated-inputs @@ -19032,14 +19188,14 @@ such as Ghostscript is needed to use this package.") (define-public r-emojifont (package (name "r-emojifont") - (version "0.5.3") + (version "0.5.5") (source (origin (method url-fetch) (uri (cran-uri "emojifont" version)) (sha256 (base32 - "1cdrrl3hvrs8rskyy6zgr7q2mmg8yb9k8sld1m64zsp7y009g19k")))) + "1hhrwilv36hd9gs1kcl2zsi6519md0h9aixjrm6lfclxvz8r6k1i")))) (properties `((upstream-name . "emojifont"))) (build-system r-build-system) (propagated-inputs @@ -19047,6 +19203,8 @@ such as Ghostscript is needed to use this package.") ("r-proto" ,r-proto) ("r-showtext" ,r-showtext) ("r-sysfonts" ,r-sysfonts))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://guangchuangyu.github.io/emojifont") (synopsis "Emoji and Font Awesome in R graphics") (description @@ -19086,14 +19244,14 @@ included.") (define-public r-qgam (package (name "r-qgam") - (version "1.3.2") + (version "1.3.3") (source (origin (method url-fetch) (uri (cran-uri "qgam" version)) (sha256 (base32 - "0lks2cj0p7irp1i01756v1l7i26d7alax1fbkc20qd6wpz840fi7")))) + "0vx2wf3rqc3j8i0870xrwxndkbgza0nnh7f0yxi8h67lfi7gws4s")))) (properties `((upstream-name . "qgam"))) (build-system r-build-system) (propagated-inputs @@ -21035,17 +21193,18 @@ done.") (define-public r-adagio (package (name "r-adagio") - (version "0.7.1") + (version "0.8.4") (source (origin (method url-fetch) (uri (cran-uri "adagio" version)) (sha256 (base32 - "1h9l0ddrxq8y35iy9hdkxdvdwsqpnpkzzbkbwwhm4380lq1m7a3k")))) + "0ihv05402iq003m0338f85pnqnlnrmx0pf1mg8cz9sgi5h98mbnl")))) (properties `((upstream-name . "adagio"))) (build-system r-build-system) - (native-inputs `(("gfortran" ,gfortran))) + (propagated-inputs + `(("r-lpsolve" ,r-lpsolve))) (home-page "https://cran.r-project.org/web/packages/adagio/") (synopsis "Discrete and global optimization routines") (description @@ -21302,14 +21461,14 @@ Edition), John Wiley and Sons.") (define-public r-anthropometry (package (name "r-anthropometry") - (version "1.14") + (version "1.15") (source (origin (method url-fetch) (uri (cran-uri "Anthropometry" version)) (sha256 (base32 - "0y52g15pcgs4b68sfczn6nnpdqsialsb4mq3wb9a2gba7qdcf76y")))) + "03xw0ggb2qqlldrv0qpjwmncnari742habb46im7y65bhgnr2awx")))) (properties `((upstream-name . "Anthropometry"))) (build-system r-build-system) (propagated-inputs @@ -21396,18 +21555,20 @@ finding peaks in spectra, converting humidity measures.") (define-public r-qqman (package (name "r-qqman") - (version "0.1.4") + (version "0.1.8") (source (origin (method url-fetch) (uri (cran-uri "qqman" version)) (sha256 (base32 - "1v9s9ag1hfb47py87wb2nad4mbsfx35832hdmrh5kxrb2f11zl1s")))) + "1a6qp5wv9bvwjchfw8x4jh48hkynlnfr21a8vqgnswldvwbq7njq")))) (properties `((upstream-name . "qqman"))) (build-system r-build-system) (propagated-inputs `(("r-calibrate" ,r-calibrate))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/qqman/") (synopsis "Q-Q and Manhattan plots for GWAS data") (description @@ -21572,14 +21733,14 @@ automatically show a loader when the output is (re)calculating.") (define-public r-rsvg (package (name "r-rsvg") - (version "2.1") + (version "2.1.2") (source (origin (method url-fetch) (uri (cran-uri "rsvg" version)) (sha256 (base32 - "0bxnwa9sbzx6jlxrzh3ymjq81vkxil2qx7kk7wp13a0cql7dhxcn")))) + "10p6aps2rsvhf4xgngl9x20cf2wqbzhlpjds8biyihvj58c1q8nn")))) (properties `((upstream-name . "rsvg"))) (build-system r-build-system) (inputs @@ -22420,14 +22581,14 @@ and analyze Stan models.") (define-public r-rpf (package (name "r-rpf") - (version "1.0.5") + (version "1.0.7") (source (origin (method url-fetch) (uri (cran-uri "rpf" version)) (sha256 (base32 - "0kz7i7g3l16irz6bxgnkxdmmd931m1fk6rl72dvs21ir5brr010l")))) + "04n605h091d6nijbbhar79zj7gfkymb6pp7v1496avzajy483klw")))) (properties `((upstream-name . "rpf"))) (build-system r-build-system) (propagated-inputs @@ -22450,14 +22611,14 @@ Complete access to optimized C functions is made available with (define-public r-openmx (package (name "r-openmx") - (version "2.19.1") + (version "2.19.5") (source (origin (method url-fetch) (uri (cran-uri "OpenMx" version)) (sha256 (base32 - "0fbndmwb3krypsavgm3blqkhh8blmi3p186yxmvgv3a9m6r154rj")))) + "0k8j6wi30yf1r550hpwl87x63i5kznz5gs46b1pl8xxcrmb863sv")))) (properties `((upstream-name . "OpenMx"))) (build-system r-build-system) (propagated-inputs @@ -22563,14 +22724,14 @@ output in R.") (define-public r-bdgraph (package (name "r-bdgraph") - (version "2.63") + (version "2.64") (source (origin (method url-fetch) (uri (cran-uri "BDgraph" version)) (sha256 (base32 - "05q6dbvdnxmh7myvw60zqcqx16f80i8d6qa4y7xnfkx02l9lwiyc")))) + "0pnzbw09c7amsvj8l4p1jnmss4rkbr1dsmagiygh8lj5fbrklgr4")))) (properties `((upstream-name . "BDgraph"))) (build-system r-build-system) (propagated-inputs @@ -22727,14 +22888,14 @@ well as Ravand and Robitzsch (2015).") (define-public r-tam (package (name "r-tam") - (version "3.5-19") + (version "3.6-45") (source (origin (method url-fetch) (uri (cran-uri "TAM" version)) (sha256 (base32 - "1x1pdy0hrk4c3x5l4gcslpvyb0sv2zgly4n3a7y8j6yrzajx0sg7")))) + "1i9frqh6xf7h8r3q66xy0kfgwsxdhj6p9r9ga043aqmwk92q78b8")))) (properties `((upstream-name . "TAM"))) (build-system r-build-system) (propagated-inputs @@ -22879,14 +23040,14 @@ and reproducible way.") (define-public r-rsconnect (package (name "r-rsconnect") - (version "0.8.16") + (version "0.8.17") (source (origin (method url-fetch) (uri (cran-uri "rsconnect" version)) (sha256 (base32 - "05ii0p0p7xpf8z0c1594s5q7wpwcs7lmlddrd67s5p2ka5m8qwiz")))) + "0cd2bpc22jam1qxn6yg7yr7xdhsm0jgnm5bm2f3vg5b3c96plxk4")))) (properties `((upstream-name . "rsconnect"))) (build-system r-build-system) (propagated-inputs @@ -23215,20 +23376,20 @@ trend test.") (define-public r-keyring (package (name "r-keyring") - (version "1.1.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "keyring" version)) (sha256 (base32 - "1hpfd4hbx43i39l995rg86kfxi7wlyla1gv8mwcdr4xx7z122zzq")))) + "1rqz29ycsmfqixhnzhhfd89j9ivnmp7x2z3vxdla622zmakbcy4c")))) (properties `((upstream-name . "keyring"))) (build-system r-build-system) (propagated-inputs - `(("r-assertthat" ,r-assertthat) + `(("r-askpass" ,r-askpass) + ("r-assertthat" ,r-assertthat) ("r-filelock" ,r-filelock) - ("r-getpass" ,r-getpass) ("r-openssl" ,r-openssl) ("r-r6" ,r-r6) ("r-rappdirs" ,r-rappdirs) @@ -23701,14 +23862,14 @@ evaluated interactively.") (define-public r-bridgesampling (package (name "r-bridgesampling") - (version "1.0-0") + (version "1.1-2") (source (origin (method url-fetch) (uri (cran-uri "bridgesampling" version)) (sha256 (base32 - "1awhvv0v42w2q6llqi1wqpaiv5zx74cqzigdsvphy2jfp8ajw64y")))) + "0sry1xwiv4y52k44hq6z8y2kysp5kxgl4dix3m94svg3ladd7v2l")))) (properties `((upstream-name . "bridgesampling"))) (build-system r-build-system) @@ -24202,14 +24363,14 @@ multi-state models.") (define-public r-scatterpie (package (name "r-scatterpie") - (version "0.1.5") + (version "0.1.6") (source (origin (method url-fetch) (uri (cran-uri "scatterpie" version)) (sha256 (base32 - "0h48l0699lpfagv09f53yismir84945m56qwzk52lc7wxyvkfcp1")))) + "1lilzybbxqhrjpwwf9050wf5f896pn5d93llp5da7ssrcn5bm9i8")))) (properties `((upstream-name . "scatterpie"))) (build-system r-build-system) (propagated-inputs @@ -24406,14 +24567,14 @@ input.") (define-public r-lightgbm (package (name "r-lightgbm") - (version "3.2.0") + (version "3.2.1") (source (origin (method url-fetch) (uri (cran-uri "lightgbm" version)) (sha256 (base32 - "0aw1zcrg7nhddfaif9544hn8g8qcylv6vzpkf8d3kl07nzvgxkvj")))) + "1136di7k3gs9kk7vd9bc3mdm0qrx3a546ngar8inmgyhi0zk6pkd")))) (properties `((upstream-name . "lightgbm"))) (build-system r-build-system) (propagated-inputs @@ -24866,14 +25027,14 @@ package.") (define-public r-spatstat-geom (package (name "r-spatstat-geom") - (version "2.0-1") + (version "2.1-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.geom" version)) (sha256 (base32 - "1r7nlgh62apchidg28fxq1a22iv1b29y5xmsg1kjwfvkbq8zxsvh")))) + "0f7rc35d8qyldf471iarbyxddwc7931g2bcbqyrz76rhgvwbdp2m")))) (properties `((upstream-name . "spatstat.geom"))) (build-system r-build-system) (propagated-inputs @@ -24892,14 +25053,14 @@ for the geometry of linear networks.") (define-public r-spatstat-core (package (name "r-spatstat-core") - (version "2.0-0") + (version "2.1-2") (source (origin (method url-fetch) (uri (cran-uri "spatstat.core" version)) (sha256 (base32 - "19wv27nfx48xkqa1amys4jf93k0d8xns20p84n5kqyibscdsksgx")))) + "0l0x461m8v93b15ywwb39mmy86qb8nsmas075x5lrzf9c31zdyns")))) (properties `((upstream-name . "spatstat.core"))) (build-system r-build-system) (propagated-inputs @@ -25090,14 +25251,14 @@ Poisson), are some of the many fast functions.") (define-public r-clusterr (package (name "r-clusterr") - (version "1.2.2") + (version "1.2.3") (source (origin (method url-fetch) (uri (cran-uri "ClusterR" version)) (sha256 (base32 - "1ky172bk15a78hky77vl60j7c81nq2495sxjrv53is25nkac7sjm")))) + "19xphxcpia7pdshn09yd328q3rbr6frz5574688ja1z7g5hsa2p7")))) (properties `((upstream-name . "ClusterR"))) (build-system r-build-system) (propagated-inputs @@ -25194,17 +25355,36 @@ addition, objects which include the k-d tree search structure can be returned to speed up repeated queries of the same set of target points.") (license license:bsd-3))) +(define-public r-naturalsort + (package + (name "r-naturalsort") + (version "0.1.3") + (source (origin + (method url-fetch) + (uri (cran-uri "naturalsort" version)) + (sha256 + (base32 + "0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d")))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/web/packages/naturalsort/") + (synopsis "Natural ordering") + (description "This package provides functions related to human natural +ordering. It handles adjacent digits in a character sequence as a number +so that natural sort function arranges a character vector by their numbers, +not digit characters.") + (license license:bsd-3))) + (define-public r-muhaz (package (name "r-muhaz") - (version "1.2.6.3") + (version "1.2.6.4") (source (origin (method url-fetch) (uri (cran-uri "muhaz" version)) (sha256 (base32 - "1lzc8arbpcxgfap3dfsgq8crpp1cxd9qlbrhvyvl79zgpxjqx4q2")))) + "1ddy8ayr4rdhzcipdvxdwd7z5g9hfp0ppacl7xf6f2612cn1185g")))) (properties `((upstream-name . "muhaz"))) (build-system r-build-system) (propagated-inputs @@ -25268,14 +25448,14 @@ models.") (define-public r-transphylo (package (name "r-transphylo") - (version "1.4.4") + (version "1.4.5") (source (origin (method url-fetch) (uri (cran-uri "TransPhylo" version)) (sha256 (base32 - "1506c97y8dnhd0c38rgvmg70q0l3xmmn07mjglhnw7hi5n5y9mv9")))) + "0g92kwi1nlmpc8m4pc9kv9xhczryr2kn9icfr3js7da7vy8g50xy")))) (properties `((upstream-name . "TransPhylo"))) (build-system r-build-system) (propagated-inputs @@ -25373,14 +25553,14 @@ the @code{survival} package.") (define-public r-exactranktests (package (name "r-exactranktests") - (version "0.8-31") + (version "0.8-32") (source (origin (method url-fetch) (uri (cran-uri "exactRankTests" version)) (sha256 (base32 - "1154dkcid3njhamdp87qs9bnx7l8bdqkcjsds9q9f2xmizs9x8gw")))) + "0p7h7w470p5qpsbrhw12zlsshyai56za5dsdva8cf9sikn0955qr")))) (properties `((upstream-name . "exactRankTests"))) (build-system r-build-system) @@ -25839,14 +26019,14 @@ for creating, simulating, or validating values for such parameters.") (define-public r-tune (package (name "r-tune") - (version "0.1.3") + (version "0.1.5") (source (origin (method url-fetch) (uri (cran-uri "tune" version)) (sha256 (base32 - "05r5jzg96g2z10a2w4w8wq1ysfaxr91acwrvn75pmcy4rmixf293")))) + "06snvnppa9xan99lkd2b7ynh916j75ga9lvifnra614akhhxv4rr")))) (properties `((upstream-name . "tune"))) (build-system r-build-system) (propagated-inputs @@ -25880,19 +26060,20 @@ methods, and post-processing steps.") (define-public r-workflowsets (package (name "r-workflowsets") - (version "0.0.1") + (version "0.0.2") (source (origin (method url-fetch) (uri (cran-uri "workflowsets" version)) (sha256 (base32 - "1q41isvj7hhbkx3y8k6kazpiygig92xannsz8dpklh0k3j9l3c2p")))) + "0kzr2sm9xpikc0r7qzkrm4vm03vxh7vcvqvaqvp727qfbpm4cly0")))) (properties `((upstream-name . "workflowsets"))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) ("r-dplyr" ,r-dplyr) + ("r-generics" ,r-generics) ("r-ggplot2" ,r-ggplot2) ("r-prettyunits" ,r-prettyunits) ("r-purrr" ,r-purrr) @@ -26081,14 +26262,14 @@ vignettes in all common formats.") (define-public r-tidytext (package (name "r-tidytext") - (version "0.3.0") + (version "0.3.1") (source (origin (method url-fetch) (uri (cran-uri "tidytext" version)) (sha256 (base32 - "1icbfw4zkbs9sp6vk814mw2zzm0bc0d7af92vhriqxaga0gbwdkx")))) + "182gad5pzz6zvhbla3d496sxwiszc1qz8kzzkksaacwpsrc61f9h")))) (properties `((upstream-name . "tidytext"))) (build-system r-build-system) (propagated-inputs @@ -26198,27 +26379,54 @@ expressive statistical grammar that coheres with the Tidy design framework.") model-related packages.") (license license:expat))) +(define-public r-conflicted + (package + (name "r-conflicted") + (version "1.0.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "conflicted" version)) + (sha256 + (base32 + "0xp04cdvmp3b1phazhmjqn0vmax1b2218xsb5854ffv43m7qvrra")))) + (properties `((upstream-name . "conflicted"))) + (build-system r-build-system) + (propagated-inputs + `(("r-memoise" ,r-memoise) + ("r-rlang" ,r-rlang))) + (home-page "https://github.com/r-lib/conflicted") + (synopsis "Alternative conflict resolution strategy") + (description + "R's default conflict management system gives the most recently loaded +package precedence. This can make it hard to detect conflicts, particularly +when they arise because a package update creates ambiguity that did not +previously exist. The @code{conflicted} package takes a different approach, +making every conflict an error and forcing you to choose which function to +use.") + (license license:gpl3))) + (define-public r-tidymodels (package (name "r-tidymodels") - (version "0.1.2") + (version "0.1.3") (source (origin (method url-fetch) (uri (cran-uri "tidymodels" version)) (sha256 (base32 - "09njrl655sh82xrzckgg56a6ndfrjla5fy8675wj4jsj14jpv0fw")))) + "18vz0xsgxrfzcfxpvilhj1w0f4v4lx5ws37nwmy40lhv3v05nxn8")))) (properties `((upstream-name . "tidymodels"))) (build-system r-build-system) (propagated-inputs `(("r-broom" ,r-broom) ("r-cli" ,r-cli) + ("r-conflicted" ,r-conflicted) ("r-dials" ,r-dials) ("r-dplyr" ,r-dplyr) ("r-ggplot2" ,r-ggplot2) ("r-infer" ,r-infer) - ("r-magrittr" ,r-magrittr) ("r-modeldata" ,r-modeldata) ("r-parsnip" ,r-parsnip) ("r-purrr" ,r-purrr) @@ -26230,6 +26438,7 @@ model-related packages.") ("r-tidyr" ,r-tidyr) ("r-tune" ,r-tune) ("r-workflows" ,r-workflows) + ("r-workflowsets" ,r-workflowsets) ("r-yardstick" ,r-yardstick))) (native-inputs `(("r-knitr" ,r-knitr) @@ -26615,14 +26824,14 @@ discovery of differentially expressed genes and markers.") (define-public r-phangorn (package (name "r-phangorn") - (version "2.6.3") + (version "2.7.0") (source (origin (method url-fetch) (uri (cran-uri "phangorn" version)) (sha256 (base32 - "08yqz8qlw960x4b52wzrm22f242xnpc8695pjkhy7bi1nzm303ga")))) + "19113x95vq09168x6v4ryfcdrb3a4ckp8rimd43sdkmz9pkfdxkx")))) (build-system r-build-system) (propagated-inputs `(("r-ape" ,r-ape) @@ -26893,13 +27102,13 @@ are.") (define-public r-mlr3misc (package (name "r-mlr3misc") - (version "0.8.0") + (version "0.9.1") (source (origin (method url-fetch) (uri (cran-uri "mlr3misc" version)) (sha256 (base32 - "0mzicqs8rhzppyd7v3ljqs35k8pp7p2jg5cs7hx21mxr831bwsys")))) + "0x1jsysw04a0y5arxl0vbv89s6bhffkwarbvgl1z2jjwz8xcd3jj")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) @@ -28260,6 +28469,80 @@ Xiaohui Yan, Jiafeng Guo, Yanyan Lan, Xueqi Cheng (2013) BTM-WWW13.pdf}.") (license license:asl2.0))) +(define-public r-rjsonio + (package + (name "r-rjsonio") + (version "1.3-1.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "RJSONIO" version)) + (sha256 + (base32 + "141ijm9570mg1180isvi0jb9vd3b08s5gb9dl1wa5v0m3s9jq52l")))) + (properties `((upstream-name . "RJSONIO"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=RJSONIO") + (synopsis "Serialize R objects to JSON") + (description + "This is a package that allows conversion to and from data in JavaScript +Object Notation (JSON) format. This allows R objects to be inserted into +Javascript/ECMAScript/ActionScript code and allows R programmers to read and +convert JSON content to R objects. This is an alternative to the @code{rjson} +package.") + (license license:bsd-3))) + +(define-public r-revgeo + (package + (name "r-revgeo") + (version "0.15") + (source + (origin + (method url-fetch) + (uri (cran-uri "revgeo" version)) + (sha256 + (base32 + "1ns7d1817475lriss6wwgvdm6lj760p40yxqaifla13c2xb73a55")))) + (properties `((upstream-name . "revgeo"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcurl" ,r-rcurl) + ("r-rjsonio" ,r-rjsonio))) + (home-page "https://cran.r-project.org/package=revgeo") + (synopsis "Reverse geocoding") + (description + "The @code{revgeo} procedure allows you to use the Photon geocoder for +OpenStreetMap, Google Maps, and Bing to reverse geocode coordinate pairs with +minimal hassle.") + (license license:gpl3+))) + +(define-public r-qpcr + (package + (name "r-qpcr") + (version "1.4-1") + (source + (origin + (method url-fetch) + (uri (cran-uri "qpcR" version)) + (sha256 + (base32 + "1r01q7jv3w59yx1gc0qw91rq7rvdhqsi8y57sqqkmwyqfw2x2vsv")))) + (properties `((upstream-name . "qpcR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-matrix" ,r-matrix) + ("r-minpack-lm" ,r-minpack-lm) + ("r-rgl" ,r-rgl) + ("r-robustbase" ,r-robustbase))) + (home-page "https://cran.r-project.org/package=qpcR") + (synopsis "Modelling and analysis of real-time PCR data") + (description + "This is a package for model fitting, optimal model selection and +calculation of various features that are essential in the analysis of +quantitative real-time polymerase chain reaction (qPCR).") + (license license:gpl2+))) + (define-public r-textplot (package (name "r-textplot") |