diff options
Diffstat (limited to 'gnu/packages/cran.scm')
| -rw-r--r-- | gnu/packages/cran.scm | 157 |
1 files changed, 90 insertions, 67 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 1509ff5d0d..ce36a6a8da 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -290,14 +290,13 @@ single step.") (define-public r-rvest (package (name "r-rvest") - (version "0.3.4") + (version "0.3.5") (source (origin (method url-fetch) (uri (cran-uri "rvest" version)) (sha256 - (base32 - "0ji5lk8g1gbv4d9c4jg1fg6rgsqrrwkm05j1id7drdw9kqdifgj1")))) + (base32 "0r0a5jic09xw5pk0x42pr99r3zab5m9s4x85ymx1sl769jz42zqf")))) (build-system r-build-system) (propagated-inputs `(("r-httr" ,r-httr) @@ -1296,14 +1295,14 @@ including functions for geolocation and routing.") (define-public r-haven (package (name "r-haven") - (version "2.1.1") + (version "2.2.0") (source (origin (method url-fetch) (uri (cran-uri "haven" version)) (sha256 (base32 - "12h64r2v2451igyl7v4w2kg0hzw9rnanph0m7smffq29ybkv9g4h")))) + "0g9d6mxqmrw2zdms78jpx2sx73pczlyy771v1h5hmxqz9sqyk7hr")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) @@ -1311,8 +1310,10 @@ including functions for geolocation and routing.") `(("r-forcats" ,r-forcats) ("r-hms" ,r-hms) ("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) ("r-readr" ,r-readr) - ("r-tibble" ,r-tibble))) + ("r-tibble" ,r-tibble) + ("r-tidyselect" ,r-tidyselect))) (home-page "https://haven.tidyverse.org") (synopsis "Import and Export 'SPSS', 'Stata' and 'SAS' Files") (description @@ -1586,13 +1587,13 @@ you to rapidly iterate while developing a package.") (define-public r-rcpp (package (name "r-rcpp") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "170jlmjrs92z5qdv58badhxycjvfjpqwwpic7rm13pc9zkb3i4xd")))) + (base32 "03h3zyjq948y0hrrs95lfk4zgx6wfrg64hjlrfrzf5na7bfh0d9b")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) ; for vignettes @@ -2056,14 +2057,13 @@ most popular ones.") (define-public r-sp (package (name "r-sp") - (version "1.3-1") + (version "1.3-2") (source (origin (method url-fetch) (uri (cran-uri "sp" version)) (sha256 - (base32 - "17xm1ig80p9wc860hm3bgishz6lj9fxgwqidj7rkbk4ap99qp62p")))) + (base32 "0kpjsqh3lzqp1m0avsvm54lazlgwfx3hyf0av3mvbyslsanj42ll")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -2584,14 +2584,14 @@ regression using Kernel Ridge Regression.") (define-public r-prodlim (package (name "r-prodlim") - (version "2018.04.18") + (version "2019.10.13") (source (origin (method url-fetch) (uri (cran-uri "prodlim" version)) (sha256 (base32 - "1aslq87sqwikh8chxc378r38146y7kv79zz0kcq3j93ivx7va8jb")))) + "0rsyfpz667y5cijmq33l318mrdw8r340khp72gcg8n490b1g0176")))) (build-system r-build-system) (propagated-inputs `(("r-kernsmooth" ,r-kernsmooth) @@ -3886,13 +3886,13 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.10") + (version "0.11") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "065ygh046ah43p5aqyrkv2vkxcnvnb4j7blfdygysg6hmqzp4pbv")))) + (base32 "0dncw6bqkal7nyarrrrj9arxy0y3nkdzmrbibcjh84m1cxd4phiw")))) (build-system r-build-system) (home-page "https://github.com/yihui/xfun") (synopsis "Miscellaneous functions") @@ -4030,14 +4030,14 @@ terminals.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.16") + (version "0.17") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "1dadq9l0527v038b1k1dyfs0dklsgxnmplls3qhqprfgskif8mga")))) + "0mgxrbj4gam2gvxfk26nq820vsfjggj81m2l7j9m8vp361k15r0w")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) @@ -5266,17 +5266,19 @@ additional external tools on any platform.") (define-public r-openxlsx (package (name "r-openxlsx") - (version "4.1.0.1") + (version "4.1.3") (source (origin (method url-fetch) (uri (cran-uri "openxlsx" version)) (sha256 (base32 - "1lflygpi1z4rlb1c6g6wsmi334maiiy7jhpg6ph4sw8lpvg12w4b")))) + "087zivh9xdh1kk8zci67ys0m2xq0slzwgnf0jl05yy4gsgb6nmyx")))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) + ("r-stringi" ,r-stringi) ("r-zip" ,r-zip))) (home-page "https://github.com/awalker89/openxlsx") (synopsis "Read, write and edit XLSX files") @@ -5467,26 +5469,52 @@ user's computer should be used to save data, caches and logs. It is a port of Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.") (license license:expat))) +(define-public r-renv + (package + (name "r-renv") + (version "0.8.3") + (source + (origin + (method url-fetch) + (uri (cran-uri "renv" version)) + (sha256 + (base32 + "0034jlaq7z40q3hcpkjlaff37dpn46kvxvzw4scbwlw4x9q8sx9j")))) + (properties `((upstream-name . "renv"))) + (build-system r-build-system) + (home-page "https://rstudio.github.io/renv") + (synopsis "Project environments") + (description + "This package provides a dependency management toolkit for R. Using +renv, you can create and manage project-local R libraries, save the state of +these libraries to a lockfile, and later restore your library as required. +Together, these tools can help make your projects more isolated, portable, and +reproducible.") + (license license:expat))) + (define-public r-learnr (package (name "r-learnr") - (version "0.9.2.1") + (version "0.10.0") (source (origin (method url-fetch) (uri (cran-uri "learnr" version)) (sha256 (base32 - "0jbk0g6fkw7zs8ykzhsvh9vvz8xmc4v03bqzjsa5mmpxpqan5vx5")))) + "0278q9nbkc4nb0rp930kjrwyidf0v7y38d1s187m4f4bs7ha82k6")))) (build-system r-build-system) (propagated-inputs - `(("r-evaluate" ,r-evaluate) + `(("r-checkmate" ,r-checkmate) + ("r-ellipsis" ,r-ellipsis) + ("r-evaluate" ,r-evaluate) ("r-htmltools" ,r-htmltools) ("r-htmlwidgets" ,r-htmlwidgets) ("r-jsonlite" ,r-jsonlite) ("r-knitr" ,r-knitr) ("r-markdown" ,r-markdown) ("r-rappdirs" ,r-rappdirs) + ("r-renv" ,r-renv) ("r-rmarkdown" ,r-rmarkdown) ("r-rprojroot" ,r-rprojroot) ("r-shiny" ,r-shiny) @@ -5654,14 +5682,14 @@ and adds the annotation to the plot.") (define-public r-ggpubr (package (name "r-ggpubr") - (version "0.2.3") + (version "0.2.4") (source (origin (method url-fetch) (uri (cran-uri "ggpubr" version)) (sha256 (base32 - "0i81mmz4qn9yzcgfa6dhkcrx4ddlflkm2c3b40isc8all43rm8rn")))) + "0ln1gh3zlfx5s7zqcpvfdiksq74v1pma5kwkhc6r0riqnjjd19pf")))) (build-system r-build-system) (propagated-inputs `(("r-cowplot" ,r-cowplot) @@ -5936,14 +5964,14 @@ functions.") (define-public r-rjags (package (name "r-rjags") - (version "4-9") + (version "4-10") (source (origin (method url-fetch) (uri (cran-uri "rjags" version)) (sha256 (base32 - "1vrmxxfnia2mkmfkp5yaq5qrlh4xg3ggab6fnj14mrp1231wb91a")))) + "1nhaim84ww8fd6m8xlpmngqcnp2qpql29ahc38366fxja3ghngmx")))) (build-system r-build-system) (propagated-inputs `(("r-coda" ,r-coda))) @@ -5989,14 +6017,14 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.3.5") + (version "0.3.6") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "005kaxjhr40shpav2pg7s7gj8f49579r7rbgwlncbwv16nn0rbbg")))) + "1i6jmnbkx7gd0qyf6akhizmxp7y1dh3h7a886mcbmrzka9d60zh4")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -6309,14 +6337,14 @@ functions.") (define-public r-flextable (package (name "r-flextable") - (version "0.5.5") + (version "0.5.6") (source (origin (method url-fetch) (uri (cran-uri "flextable" version)) (sha256 (base32 - "1q6x9mfk5gikqjbbra1dn8hs1rq5ws99jdjav3m113gx9f2j5yxh")))) + "1f869f2dfqkzhf6yix7xcbs8rn1nwq3sg623h74zg6h1pl6px66w")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -6685,14 +6713,14 @@ bootstrap. Confidence intervals can be computed for (p)AUC or ROC curves.") (define-public r-rootsolve (package (name "r-rootsolve") - (version "1.7") + (version "1.8.1") (source (origin (method url-fetch) (uri (cran-uri "rootSolve" version)) (sha256 (base32 - "08ic6ggcc5dw4nv9xsqkm3vnvswmxyhnqnv1rdjv1h2gy1ivpcq8")))) + "0skrspq7sd7gaq73w91km14v8znc8chncgy64hvjgcng2xw15phx")))) (properties `((upstream-name . "rootSolve"))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -6880,13 +6908,13 @@ second male (P2) based on the best fit distribution.") (define-public r-abcrf (package (name "r-abcrf") - (version "1.8") + (version "1.8.1") (source (origin (method url-fetch) (uri (cran-uri "abcrf" version)) (sha256 - (base32 "0r31ki89z8zzcffm0yvd2zw3q96rk6g6fnwwkql902mgajbrha1f")))) + (base32 "1ghbd24yhqy3xhdxas6ccn84nkavqpgldx5ck8kijknc7qjm8k27")))) (build-system r-build-system) (propagated-inputs `(("r-doparallel" ,r-doparallel) @@ -8275,14 +8303,14 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "0.12.0") + (version "0.13.0") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "0idfycjk05gyykfp9ibmhxfcjvd01ikh1dl0fb4nqw6znw3ar0xp")))) + "0ryfbaav0k874kbwmhbiv7fan93dmkpaimm1iw5kryjhhs3917lb")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -8291,7 +8319,6 @@ effects models and Bayesian models.") ("r-mass" ,r-mass) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) - ("r-scales" ,r-scales) ("r-sjlabelled" ,r-sjlabelled) ("r-sjmisc" ,r-sjmisc))) (home-page "https://github.com/strengejacke/ggeffects") @@ -8922,14 +8949,14 @@ address a bug.") (define-public r-rcppannoy (package (name "r-rcppannoy") - (version "0.0.13") + (version "0.0.14") (source (origin (method url-fetch) (uri (cran-uri "RcppAnnoy" version)) (sha256 (base32 - "1jibp9b07c5ka1kif0nl7f168hxfvysj32wnmnxg85l663hmvm8j")))) + "1wiigx5g5788j6lyc3f6bs1rsvc4alyc3052g35hxl1giinxmhn4")))) (properties `((upstream-name . "RcppAnnoy"))) (build-system r-build-system) (propagated-inputs @@ -9124,14 +9151,13 @@ isosurfaces.") (define-public r-ks (package (name "r-ks") - (version "1.11.5") + (version "1.11.6") (source (origin (method url-fetch) (uri (cran-uri "ks" version)) (sha256 - (base32 - "06ymx244yknmpl6935l4pafqbm4gcbpnhqg7rinql6rrfr9mcrag")))) + (base32 "0hcccjfqnzdxkmnfzq8c5a7yhc138azwyl7rp29d1vl1jawwrwfq")))) (build-system r-build-system) (propagated-inputs `(("r-fnn" ,r-fnn) @@ -9583,13 +9609,13 @@ manipulate tree data.") (define-public r-rvcheck (package (name "r-rvcheck") - (version "0.1.5") + (version "0.1.6") (source (origin (method url-fetch) (uri (cran-uri "rvcheck" version)) (sha256 - (base32 "15222q3sglq0mad5q806p99fhrb96qizmpqw35fa1rb148f95paf")))) + (base32 "11n3qxapxcqsa0771s9q8n95kxmfyflya1d6wz4mm0lz0i6q55ia")))) (build-system r-build-system) (propagated-inputs `(("r-biocmanager" ,r-biocmanager) @@ -9987,14 +10013,13 @@ creating color scales and calculating color distances.") (define-public r-ore (package (name "r-ore") - (version "1.6.2") + (version "1.6.3") (source (origin (method url-fetch) (uri (cran-uri "ore" version)) (sha256 - (base32 - "1l1ziljgm5gwjhvjq42wi5vcwbxlaj5dl9w8bhz0wh8vx4ajj07m")))) + (base32 "1vh6w3arrhgkfjjjw7ci91xmz4wpfr3cmwd5zkqch89dgn07skkv")))) (build-system r-build-system) (home-page "https://github.com/jonclayden/ore") (synopsis "R interface to the Onigmo regular expression library") @@ -10878,13 +10903,13 @@ This makes it a convenient and fast interface to C/C++ and Fortran code.") (define-public r-spam (package (name "r-spam") - (version "2.3-0.2") + (version "2.4-0") (source (origin (method url-fetch) (uri (cran-uri "spam" version)) (sha256 - (base32 "0czmzwhvcs0shm1asvphhz366df3n7vrlls4cfpq5b3i19fak3w4")))) + (base32 "0xb7a0x1i93kzijr518m9plzmg8s3mxh5anwfx9xrkg5ipldvz10")))) (build-system r-build-system) (propagated-inputs `(("r-dotcall64" ,r-dotcall64))) @@ -10907,13 +10932,13 @@ Differences with other sparse matrix packages are: (define-public r-fields (package (name "r-fields") - (version "9.9") + (version "10.0") (source (origin (method url-fetch) (uri (cran-uri "fields" version)) (sha256 - (base32 "1qbqdqq76xgnlbc9z643zn4s8k493h1jmav2f465hfvp63306br6")))) + (base32 "173zm5vr236ydiq0v27qy0l3x7h9fc7jly38iakg77j26i0a01il")))) (build-system r-build-system) (propagated-inputs `(("r-maps" ,r-maps) @@ -11100,14 +11125,14 @@ putative directions).") (define-public r-rbamtools (package (name "r-rbamtools") - (version "2.16.11.2") + (version "2.16.17") (source (origin (method url-fetch) (uri (cran-uri "rbamtools" version)) (sha256 (base32 - "0gzkb1xyrkriv45wq8gv7qfwjslnvwkfkk5jjc4wg5kmm0ydpdzj")))) + "0qj37ljdva3v29s01dkrbg31mcfzy3bl145cp40d54v4h9xhcghc")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) (propagated-inputs @@ -11383,14 +11408,14 @@ them in distributed compute environments.") (define-public r-future (package (name "r-future") - (version "1.14.0") + (version "1.15.0") (source (origin (method url-fetch) (uri (cran-uri "future" version)) (sha256 (base32 - "1jyv2wlmpfqbk3hw269h4xg36na3wh1kd1lxmwdb40bsv4850lqa")))) + "1cbp7agb9lipjxsh7xm1yphh8a4hrjy7wrbkvhsxn1swh0c4s3b7")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -13080,13 +13105,13 @@ either PDF/EPS files.") (define-public r-polspline (package (name "r-polspline") - (version "1.1.16") + (version "1.1.17") (source (origin (method url-fetch) (uri (cran-uri "polspline" version)) (sha256 - (base32 "0d49h7if8h6d784nsnqqxakg19kvl8cmz8k53901m2h0c0amlfxa")))) + (base32 "0c7fnxpqpy3hibiim4yib6l6bq363s97wwvllxp4lp8h06fjcyyn")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (home-page "https://cran.r-project.org/web/packages/polspline/") @@ -13336,13 +13361,13 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.14") + (version "0.15") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "1jiq2d292y0l3f4npyfzfpnmb0sqxsl212kkjfbjg5301h0na762")))) + "0pgkabaqsckaz8z1nlza84jp172jyzv17kx5dily43jfx5psy2ap")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -13421,14 +13446,13 @@ data manipulation and visualization.") (define-public r-kernlab (package (name "r-kernlab") - (version "0.9-27") + (version "0.9-29") (source (origin (method url-fetch) (uri (cran-uri "kernlab" version)) (sha256 - (base32 - "1m0xqf6gyvwayz7w3c83y32ayvnlz0jicj8ijk808zq9sh7dbbgn")))) + (base32 "0vqhndl4zm7pvkfvq0f6i9cbrm7pij6kmdp7d7w39pa100x6knn3")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/kernlab") (synopsis "Kernel-based machine learning tools") @@ -13784,16 +13808,15 @@ consists of @code{grid} grobs and viewports that can then be manipulated with (define-public r-farver (package (name "r-farver") - (version "1.1.0") + (version "2.0.1") (source (origin (method url-fetch) (uri (cran-uri "farver" version)) (sha256 (base32 - "1dllgx121al374gyp9pjv1m8ip4imm8zhbgyh1970dsz2c4z71i0")))) + "0aq1hk561pz3s3lpay1adwsihha6mxp7zbj4n1m6307g34awlhhn")))) (build-system r-build-system) - (propagated-inputs `(("r-rcpp" ,r-rcpp))) (home-page "https://github.com/thomasp85/farver") (synopsis "Vectorized color conversion and comparison") (description @@ -14862,14 +14885,14 @@ includes data sets from oceanography.") (define-public r-ggfortify (package (name "r-ggfortify") - (version "0.4.7") + (version "0.4.8") (source (origin (method url-fetch) (uri (cran-uri "ggfortify" version)) (sha256 (base32 - "1wk9j0xg5hj9i1vf62qjiphv8cbsgq7y6baay3pfl3wyb2dwgci0")))) + "191q2z7w0l4v7swjlxs2hjgbjngw2838688s7ygnj0kigsm310f3")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) |