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-rw-r--r--gnu/packages/bioinformatics.scm19
1 files changed, 3 insertions, 16 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f2800d3163..92d92e7d02 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10608,7 +10608,7 @@ in an easily configurable manner.")
(define-public pigx-bsseq
(package
(name "pigx-bsseq")
- (version "0.1.6")
+ (version "0.1.7")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_bsseq/"
@@ -10616,8 +10616,7 @@ in an easily configurable manner.")
"/pigx_bsseq-" version ".tar.gz"))
(sha256
(base32
- "1dipikph0xdr8fp0h1flpafcrg60y4aabljg8fl1v92j3gxdggmw"))
- (patches (search-patches "pigx-bsseq-no-citeproc.patch"))))
+ "1hfiignq3410dbl6f67vc6zr69abknpcgxixx475dspky2jb5lyn"))))
(build-system gnu-build-system)
(arguments
`(;; TODO: tests currently require 12+GB of RAM. See
@@ -10625,18 +10624,6 @@ in an easily configurable manner.")
#:tests? #f
#:phases
(modify-phases %standard-phases
- (add-before 'bootstrap 'autoreconf
- (lambda _
- ;; This was fixed in commit
- ;; d56ac732524da659afbbb0972f7a87fa178ae58e, but there is no
- ;; release with this fix.
- (call-with-output-file "VERSION"
- (lambda (port) (display ,version port)))
- ;; https://github.com/BIMSBbioinfo/pigx_bsseq/issues/181
- (substitute* "m4/ax_r_package.m4"
- (("if\\(is.na\\(packageDescription\\(\"PKG\"\\)\\)\\)")
- "if(system.file(package=\"PKG\") == \"\")"))
- (invoke "autoreconf" "-vif")))
(add-before 'configure 'set-PYTHONPATH
(lambda _
(setenv "PYTHONPATH" (getenv "GUIX_PYTHONPATH"))))
@@ -10648,7 +10635,7 @@ in an easily configurable manner.")
(search-input-directory inputs
"share/zoneinfo")))))))
(native-inputs
- (list tzdata automake autoconf))
+ (list tzdata))
(inputs
(list coreutils
sed