diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 14 |
1 files changed, 5 insertions, 9 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 965dd91853..75668418f0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5704,7 +5704,7 @@ partial genes, and identifies translation initiation sites.") (string-append out "/bin/roary-create_pan_genome_plots.R")) (r-site-lib (getenv "R_LIBS_SITE")) (coreutils-path - (string-append (assoc-ref inputs "coreutils") "/bin"))) + (dirname (search-input-file inputs "bin/chmod")))) (wrap-program file `("R_LIBS_SITE" ":" prefix (,(string-append r-site-lib ":" out "/site-library/")))) @@ -12285,17 +12285,13 @@ datasets.") (add-after 'install 'link-tools (lambda* (#:key inputs outputs #:allow-other-keys) (let ((bin (string-append (assoc-ref outputs "out") "/bin/"))) - (symlink (string-append (assoc-ref inputs "prodigal") - "/bin/prodigal") + (symlink (search-input-file inputs "/bin/prodigal") (string-append bin "ngless-" ,version "-prodigal")) - (symlink (string-append (assoc-ref inputs "minimap2") - "/bin/minimap2") + (symlink (search-input-file inputs "/bin/minimap2") (string-append bin "ngless-" ,version "-minimap2")) - (symlink (string-append (assoc-ref inputs "samtools") - "/bin/samtools") + (symlink (search-input-file inputs "/bin/samtools") (string-append bin "ngless-" ,version "-samtools")) - (symlink (string-append (assoc-ref inputs "bwa") - "/bin/bwa") + (symlink (search-input-file inputs "/bin/bwa") (string-append bin "ngless-" ,version "-bwa")) #t)))))) (inputs |