diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 21 |
1 files changed, 11 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 0d5e6e3d20..e189dd7b00 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -313,7 +313,7 @@ BAM files.") (define-public bcftools (package (name "bcftools") - (version "1.9") + (version "1.11") (source (origin (method url-fetch) (uri (string-append "https://github.com/samtools/bcftools/" @@ -321,11 +321,11 @@ BAM files.") version "/bcftools-" version ".tar.bz2")) (sha256 (base32 - "1j3h638i8kgihzyrlnpj82xg1b23sijibys9hvwari3fy7kd0dkg")) + "0r508mp15pqzf8r1269kb4v5naw9zsvbwd3cz8s1yj7carsf9viw")) (modules '((guix build utils))) (snippet '(begin ;; Delete bundled htslib. - (delete-file-recursively "htslib-1.9") + (delete-file-recursively "htslib-1.11") #t)))) (build-system gnu-build-system) (arguments @@ -4215,7 +4215,7 @@ performance.") (define-public htslib (package (name "htslib") - (version "1.9") + (version "1.11") (source (origin (method url-fetch) (uri (string-append @@ -4223,7 +4223,7 @@ performance.") version "/htslib-" version ".tar.bz2")) (sha256 (base32 - "16ljv43sc3fxmv63w7b2ff8m1s7h89xhazwmbm1bicz8axq8fjz0")))) + "1mrq4mihzx37yqhj3sfz6da6mw49niia808bzsw2gkkgmadxvyng")))) (build-system gnu-build-system) ;; Let htslib translate "gs://" and "s3://" to regular https links with ;; "--enable-gcs" and "--enable-s3". For these options to work, we also @@ -5613,7 +5613,7 @@ to the user's query of interest.") (define-public samtools (package (name "samtools") - (version "1.9") + (version "1.11") (source (origin (method url-fetch) @@ -5622,11 +5622,11 @@ to the user's query of interest.") version "/samtools-" version ".tar.bz2")) (sha256 (base32 - "10ilqbmm7ri8z431sn90lvbjwizd0hhkf9rcqw8j823hf26nhgq8")) + "1dp5wknak4arnw5ghhif9mmljlfnw5bgm91wib7z0j8wdjywx0z2")) (modules '((guix build utils))) (snippet '(begin ;; Delete bundled htslib. - (delete-file-recursively "htslib-1.9") + (delete-file-recursively "htslib-1.11") #t)))) (build-system gnu-build-system) (arguments @@ -10954,7 +10954,7 @@ programs for inferring phylogenies (evolutionary trees).") (define-public imp (package (name "imp") - (version "2.6.2") + (version "2.13.0") (source (origin (method url-fetch) @@ -10962,7 +10962,7 @@ programs for inferring phylogenies (evolutionary trees).") version "/download/imp-" version ".tar.gz")) (sha256 (base32 - "0lxqx7vh79d771svr611dkilp6sn30qrbw8zvscbrm37v38d2j6h")))) + "1z1vcpwbylixk0zywngg5iw0jv083jj1bqphi817jpg3fb9fx2jj")))) (build-system cmake-build-system) (arguments `(;; FIXME: Some tests fail because they produce warnings, others fail @@ -10974,6 +10974,7 @@ programs for inferring phylogenies (evolutionary trees).") ("swig" ,swig) ("hdf5" ,hdf5) ("fftw" ,fftw) + ("eigen" ,eigen) ("python" ,python-2))) (propagated-inputs `(("python2-numpy" ,python2-numpy) |