diff options
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 12 insertions, 4 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ed4470e313..150bbc361f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10567,10 +10567,16 @@ expression report comparing samples in an easily configurable manner.") "/pigx_chipseq-" version ".tar.gz")) (sha256 (base32 - "0c6npx35sszycf059w1x1k4k9hq1qqxny0i4p57q1188czr4561h")))) + "0c6npx35sszycf059w1x1k4k9hq1qqxny0i4p57q1188czr4561h")) + (patches (search-patches "pigx-chipseq-no-citeproc.patch")))) (build-system gnu-build-system) - ;; parts of the tests rely on access to the network - (arguments '(#:tests? #f)) + (arguments + `(#:tests? #f ; parts of the tests rely on access to the network + #:phases + (modify-phases %standard-phases + (add-before 'bootstrap 'autoreconf + (lambda _ + (invoke "autoreconf" "-vif")))))) (inputs `(("grep" ,grep) ("coreutils" ,coreutils) @@ -10621,7 +10627,9 @@ expression report comparing samples in an easily configurable manner.") ("bedtools" ,bedtools) ("kentutils" ,kentutils))) (native-inputs - `(("python-pytest" ,python-pytest))) + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("python-pytest" ,python-pytest))) (home-page "https://bioinformatics.mdc-berlin.de/pigx/") (synopsis "Analysis pipeline for ChIP sequencing experiments") (description "PiGX ChIPseq is an analysis pipeline for preprocessing, peak |