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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 69ffdbe79b..e6f462b697 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1128,6 +1128,35 @@ raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.") (license license:gpl2+))) +(define-public r-absseq + (package + (name "r-absseq") + (version "1.48.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "ABSSeq" version)) + (sha256 + (base32 + "0l2hh6qv4lhw1g1kciw2f3ssj3lw83hqxnkmxzmv7snik3k6i650")))) + (properties `((upstream-name . "ABSSeq"))) + (build-system r-build-system) + (propagated-inputs (list r-limma r-locfit)) + (home-page "https://bioconductor.org/packages/ABSSeq") + (synopsis + "RNA-Seq analysis based on modelling absolute expression differences") + (description + "This package implements a new RNA-Seq analysis method and integrates two +modules: a basic model for pairwise comparison and a linear model for complex +design. RNA-Seq quantifies gene expression with reads count, which usually +consists of conditions (or treatments) and several replicates for each +condition. This software infers differential expression directly by the +counts difference between conditions. It assumes that the sum counts +difference between conditions follow a negative binomial distribution. In +addition, @code{ABSSeq} moderates the fold-changes by two steps: the +expression level and gene-specific dispersion, that might facilitate the gene +ranking by fold-change and visualization.") + (license license:gpl3+))) + (define-public r-aneufinderdata (package (name "r-aneufinderdata") |