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Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 71037a86e2..8463e5874d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4766,6 +4766,39 @@ provided as a matrix which can be used as an offset for different expression of gene-level counts.") (license license:gpl2+))) +;; This is a CRAN package, but it depends on a Bioconductor package. +(define-public r-valr + (package + (name "r-valr") + (version "0.6.4") + (source + (origin + (method url-fetch) + (uri (cran-uri "valr" version)) + (sha256 + (base32 + "0dd41irvibh6rwi52bw4zg4m7wpyihlp1kdkb8fdji3csw2fiz4k")))) + (build-system r-build-system) + (propagated-inputs + (list r-broom + r-dplyr + r-ggplot2 + r-rcpp + r-readr + r-rlang + r-rtracklayer ;bioconductor package + r-stringr + r-tibble)) + (native-inputs + (list r-knitr)) + (home-page "https://github.com/rnabioco/valr") + (synopsis "Genome interval arithmetic in R") + (description + "This package enables you to read and manipulate genome intervals and +signals. It provides functionality similar to command-line tool suites within +R, enabling interactive analysis and visualization of genome-scale data.") + (license license:expat))) + (define-public r-variantannotation (package (name "r-variantannotation") |