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-rw-r--r--gnu/packages/bioconductor.scm49
1 files changed, 48 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 37ac94128b..20aabb0be4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2018 Roel Janssen <roel@gnu.org>
+;;; Copyright © 2017, 2018 Roel Janssen <roel@gnu.org>
;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;;
;;; This file is part of GNU Guix.
@@ -228,6 +228,53 @@ database is exposed as a @code{TxDb} object.")
(license license:artistic2.0)))
+(define-public r-biocgenerics
+ (package
+ (name "r-biocgenerics")
+ (version "0.28.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BiocGenerics" version))
+ (sha256
+ (base32
+ "0cvpsrhg7sn7lpqgxvqrsagv6j7xj5rafq5xdjfd8zc4gxrs5rb8"))))
+ (properties
+ `((upstream-name . "BiocGenerics")))
+ (build-system r-build-system)
+ (home-page "https://bioconductor.org/packages/BiocGenerics")
+ (synopsis "S4 generic functions for Bioconductor")
+ (description
+ "This package provides S4 generic functions needed by many Bioconductor
+packages.")
+ (license license:artistic2.0)))
+
+(define-public r-annotate
+ (package
+ (name "r-annotate")
+ (version "1.60.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "annotate" version))
+ (sha256
+ (base32
+ "0p6c96lay23a67dyirgnwzm2yw22m592z780vy6p4nqwla8ha18n"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-dbi" ,r-dbi)
+ ("r-rcurl" ,r-rcurl)
+ ("r-xml" ,r-xml)
+ ("r-xtable" ,r-xtable)))
+ (home-page
+ "https://bioconductor.org/packages/annotate")
+ (synopsis "Annotation for microarrays")
+ (description "This package provides R environments for the annotation of
+microarrays.")
+ (license license:artistic2.0)))
+
(define-public r-hpar
(package
(name "r-hpar")