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-rw-r--r--gnu/packages/bioconductor.scm33
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8d7210d4ef..3ec1273cd4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14333,6 +14333,39 @@ intra and interspecies module preservation statistics between different
networks.")
(license license:gpl3)))
+(define-public r-bionet
+ (package
+ (name "r-bionet")
+ (version "1.52.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BioNet" version))
+ (sha256
+ (base32
+ "15rk1jfv4h1mxvr5bs0qmq6fdnza7zcmksigqxb46fs7f6znr3yi"))))
+ (properties `((upstream-name . "BioNet")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-graph" ,r-graph)
+ ("r-igraph" ,r-igraph)
+ ("r-rbgl" ,r-rbgl)))
+ (home-page "http://bioconductor.org/packages/release/bioc/html/BioNet.html")
+ (synopsis "Functional analysis of biological networks")
+ (description
+ "This package provides functions for the integrated analysis of
+protein-protein interaction networks and the detection of functional modules.
+Different datasets can be integrated into the network by assigning p-values of
+statistical tests to the nodes of the network. E.g. p-values obtained from
+the differential expression of the genes from an Affymetrix array are assigned
+to the nodes of the network. By fitting a beta-uniform mixture model and
+calculating scores from the p-values, overall scores of network regions can be
+calculated and an integer linear programming algorithm identifies the maximum
+scoring subnetwork.")
+ (license license:gpl2+)))
+
(define-public r-tximeta
(package
(name "r-tximeta")