diff options
Diffstat (limited to 'gnu/packages/astronomy.scm')
| -rw-r--r-- | gnu/packages/astronomy.scm | 205 |
1 files changed, 205 insertions, 0 deletions
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 764a674a6d..908c3ada3a 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -493,6 +493,60 @@ in FITS files.") (license (license:non-copyleft "file://License.txt" "See License.txt in the distribution.")))) +(define-public python-aplpy + (package + (name "python-aplpy") + (version "2.1.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "aplpy" version)) + (sha256 + (base32 "0ph9jhv4q4i4z6nkqr6hjw9148kdlnayxsn83qgv5dqn0h3nc9r8")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-astropy + python-matplotlib + python-numpy + python-pillow + python-pyavm + python-pyregion + python-reproject + python-scikit-image + python-shapely)) + (native-inputs + (list python-pytest-astropy + python-pytest-mpl + python-semantic-version)) + (home-page "http://aplpy.github.io") + (synopsis "Astronomical Plotting Library in Python") + (description + "@acronym{APLpy, the Astronomical Plotting Library in Python} is a Python +module aimed at producing publication-quality plots of astronomical imaging data +in FITS format. The module uses @code{matplotlib}, a powerful and interactive +plotting package. It is capable of creating output files in several graphical +formats, including EPS, PDF, PS, PNG, and SVG. + +Main features: +@itemize +@item Make plots interactively or using scripts +@item Show grayscale, colorscale, and 3-color RGB images of FITS files +@item Generate co-aligned FITS cubes to make 3-color RGB images +@item Make plots from FITS files with arbitrary WCS (e.g. position-velocity) +@item Slice multi-dimensional FITS cubes +@item Overlay any number of contour sets +@item Overlay markers with fully customizable symbols +@item Plot customizable shapes like circles, ellipses, and rectangles +@item Overlay ds9 region files +@item Overlay coordinate grids +@item Show colorbars, scalebars, and beams +@item Customize the appearance of labels and ticks +@item Hide, show, and remove different contour and marker layers +@item Pan, zoom, and save any view as a full publication-quality plot +@item Save plots as EPS, PDF, PS, PNG, and SVG +@end itemize") + (license license:expat))) + (define-public python-astroml (package (name "python-astroml") @@ -2166,6 +2220,29 @@ cases for which diffractive rather than geometric optics is the topic of interest, and which require portability between platforms or ease of scripting.") (license license:bsd-3))) +(define-public python-pyavm + (package + (name "python-pyavm") + (version "0.9.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "PyAVM" version)) + (sha256 + (base32 "0vgjqvddq4a5lnmg8msm7fwqs3r6fc748xzvnhyvc387h0z8pdxk")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-astropy python-numpy)) + (native-inputs + (list python-pillow python-pytest python-setuptools-scm)) + (home-page "https://astrofrog.github.io/pyavm/") + (synopsis "Simple pure-python AVM meta-data handling") + (description + "PyAVM is a module to represent, read, and write metadata following the +@acronym{AVM, Astronomy Visualization Metadata} standard provided by +@url{https://www.virtualastronomy.org/avm_metadata.php, vamp} project.") + (license license:expat))) + (define-public python-pyvo (package (name "python-pyvo") @@ -2455,6 +2532,60 @@ positions of the sun: dawn, sunrise, solar noon, sunset, dusk, solar elevation, solar azimuth, rahukaalam, and the phases of the moon.") (license license:asl2.0))) +(define-public python-spectral-cube + (package + (name "python-spectral-cube") + (version "0.6.3") + (source + (origin + (method url-fetch) + (uri (pypi-uri "spectral-cube" version)) + (sha256 + (base32 "10q76rsgf9w4j7y68mfa870bpxf06m6kqvivj4340jmgnsrfy1zg")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-astropy + python-aplpy + python-casa-formats-io + python-dask + python-distributed + python-fsspec + ;; python-glue-core ; Not packed http://glueviz.org/, optional. + python-joblib + python-matplotlib + python-numpy + python-radio-beam + python-reproject + python-scipy + python-six + ;; python-yt ; Not packed https://yt-project.org/, optional. + python-zarr)) + (native-inputs + (list ;; XXX: Introduce cycle with pvextractor, listed as extra requiremnts + ;; in [noviz] option. + ;; python-pvextractor + python-pytest-astropy + python-regions + python-semantic-version + python-setuptools-scm)) + (home-page "https://spectral-cube.readthedocs.io/en/latest/") + (synopsis "Library for reading and analyzing astrophysical spectral data cubes") + (description + "The spectral-cube package provides an easy way to read, manipulate, +analyze, and write data cubes with two positional dimensions and one spectral +dimension, optionally with Stokes parameters. + +It provides the following main features: +@itemize +@item A uniform interface to spectral cubes, robust to the wide range of conventions +of axis order, spatial projections, and spectral units that exist in the wild. +@item Easy extraction of cube sub-regions using physical coordinates. +@item Ability to easily create, combine, and apply masks to datasets. +@item Basic summary statistic methods like moments and array aggregates. +@item Designed to work with datasets too large to load into memory. +@end itemize") + (license license:bsd-3))) + (define-public python-spherical-geometry (package (name "python-spherical-geometry") @@ -3471,6 +3602,46 @@ astrophysical simulations supporting PKDGRAV/Gasoline, Gadget, Gadget4/Arepo, N-Chilada and RAMSES AMR outputs.") (license license:gpl3+))) +(define-public python-pyregion + (package + (name "python-pyregion") + (version "2.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyregion" version)) + (sha256 + (base32 "0l7qb7r8fnv46mdih4m5b8jaxixgpw6m7v37dpikjkblgh0vigaw")))) + (build-system pyproject-build-system) + (arguments + (list + #:phases + #~(modify-phases %standard-phases + (add-before 'check 'build-extensions + (lambda _ + ;; Cython extensions have to be built before running the tests. + (invoke "python" "setup.py" "build_ext" "--inplace")))))) + (propagated-inputs + (list python-astropy python-numpy python-pyparsing)) + (native-inputs + (list python-cython + python-pytest + python-pytest-astropy-header + python-setuptools-scm)) + (home-page "https://github.com/astropy/pyregion") + (synopsis "Python parser for ds9 region files") + (description + "@code{pyregion} is a python module to parse ds9 region files. It also +supports ciao region files. +Features: +@itemize +@item ds9 and ciao region files. +@item (physical, WCS) coordinate conversion to the image coordinate. +@item convert regions to matplotlib patches. +@item convert regions to spatial filter (i.e., generate mask images) +@end itemize") + (license license:expat))) + (define-public python-pysynphot (package (name "python-pysynphot") @@ -3955,6 +4126,40 @@ format, which are used by ASDF to serialize and deserialize data for the Nancy Grace Roman Space Telescope.") (license license:bsd-3))) +(define-public python-radio-beam + (package + (name "python-radio-beam") + (version "0.3.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "radio-beam" version)) + (sha256 + (base32 "19c6gmm1wvyp5nn1yfbzl428rkysdq273j2yaarxpivv7cwj7qjk")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-astropy + python-matplotlib + python-numpy + python-scipy + python-six)) + (native-inputs (list python-pytest-astropy python-setuptools-scm)) + (home-page "https://radio-beam.readthedocs.io/en/latest/") + (synopsis "Operations for radio astronomy beams with Astropy") + (description + "Radio Beam is a simple toolkit for reading beam information from FITS +headers and manipulating beams. +Some example applications include: +@itemize +@item Convolution and deconvolution +@item Unit conversion (Jy to/from K) +@item Handle sets of beams for spectral cubes with varying resolution between +channels +@item Find the smallest common beam from a set of beams +@item Add the beam shape to a matplotlib plot +@end itemize") + (license license:bsd-3))) + (define-public python-roman-datamodels (package (name "python-roman-datamodels") |