diff options
Diffstat (limited to 'gnu/packages/algebra.scm')
| -rw-r--r-- | gnu/packages/algebra.scm | 156 |
1 files changed, 69 insertions, 87 deletions
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index f319e260e9..9335cd6e18 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2022 Andreas Enge <andreas@enge.fr> +;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2022, 2023, 2024 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2013, 2015, 2017, 2018, 2021 Ludovic Courtès <ludo@gnu.org> -;;; Copyright © 2016-2023 Nicolas Goaziou <mail@nicolasgoaziou.fr> +;;; Copyright © 2016-2024 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2014, 2018 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016, 2018, 2019, 2021, 2023 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017, 2020-2022 Efraim Flashner <efraim@flashner.co.il> @@ -12,9 +12,10 @@ ;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de> ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> -;;; Copyright © 2020, 2021, 2023 Vinicius Monego <monego@posteo.net> +;;; Copyright © 2020, 2021, 2023, 2024 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2021 Lars-Dominik Braun <ldb@leibniz-psychology.org> ;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2023 Mehmet Tekman <mtekman89@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -133,25 +134,26 @@ greatest common divisor operations.") (define-public cm (package (name "cm") - (version "0.4.2") + (version "0.4.3") (source (origin (method url-fetch) (uri (string-append - "http://www.multiprecision.org/downloads/cm-" + "https://www.multiprecision.org/downloads/cm-" version ".tar.gz")) (sha256 (base32 - "1c6m00wiw3rs5f0lq6c80rdr3dzklsvh69l8w3s7bj2r6yha6qbw")))) + "01dha0hl0daappjiydpk4ngl9nxkxli6a48jp6d7v85yjjykac5j")))) (build-system gnu-build-system) (propagated-inputs - (list mpfrcx zlib)) ; Header files included from cm_common.h. + (list mpfrcx zlib)) ; Header files included from lib/cm.h. (inputs - (list pari-gp)) + (list flint pari-gp)) (synopsis "CM constructions for elliptic curves") (description "The CM software implements the construction of ring class fields of imaginary quadratic number fields and of elliptic curves with complex -multiplication via floating point approximations. It consists of libraries +multiplication via floating point approximations, and the elliptic curve +primality proving algorithm (ECPP). It consists of libraries that can be called from within a C program and of executable command line applications.") (license license:gpl3+) @@ -295,6 +297,34 @@ GP2C, the GP to C compiler, translates GP scripts to PARI programs.") (license license:gpl2) (home-page "https://pari.math.u-bordeaux.fr/"))) +(define-public paritwine + (package + (name "paritwine") + (version "0.2.0") + (source (origin + (method url-fetch) + (uri (string-append + "https://www.multiprecision.org/downloads/" name + "-" version + ".tar.gz")) + (sha256 + (base32 + "15m5jxmhx5zivk1k9wxpmzs8kqva3kvgxizdrkrmmp1qycn85n23")))) + (build-system gnu-build-system) + (propagated-inputs (list pari-gp + gmp + mpfr + mpc + cmh + flint)) ; referenced in src/paritwine.h + (synopsis "Glue library between PARI/GP and other mathematics libraries") + (description + "PariTwine is a glue library between the system for computer algebra +and number theory PARI/GP and a number of other mathematics libraries, +currently GMP, GNU MPFR, GNU MPC, FLINT and CMH.") + (license license:gpl2+) + (home-page "https://www.multiprecision.org/paritwine/index.html"))) + (define-public cmh (package (name "cmh") @@ -328,7 +358,7 @@ precision.") (define-public giac (package (name "giac") - (version "1.9.0-45") + (version "1.9.0-93") (source (origin (method url-fetch) @@ -340,7 +370,7 @@ precision.") "~parisse/debian/dists/stable/main/source/" "giac_" version ".tar.gz")) (sha256 - (base32 "0yxsl1vvwcbpwcmzp9v9rfm9djmapab0nhb3gs7zmjv5yvzbgj4d")))) + (base32 "11acbgd264vi9r3gzx8js8x2piavhybr97iyrh027qvxlbsdsgqm")))) (build-system gnu-build-system) (arguments (list @@ -417,41 +447,20 @@ or text interfaces) or as a C++ library.") (define-public flint (package (name "flint") - (version "2.9.0") + (version "3.0.1") (source (origin (method url-fetch) - (uri (string-append "http://flintlib.org/flint-" version ".tar.gz")) + (uri (string-append "https://flintlib.org/flint-" version ".tar.gz")) (sha256 - (base32 "0sp79ixaawjzna79afrlwlx9hg55jxil03f1wq435j9k23ar1h1g")))) + (base32 "1d4lawfvmjd4n7rp4z9xkwwjjbrjhkmxnxw1xf0ki1isa001lcbv")))) (build-system gnu-build-system) (inputs (list ntl)) (propagated-inputs (list gmp mpfr)) ; header files from both are included by flint/arith.h (arguments - `(#:parallel-tests? #f ; seems to be necessary on arm - #:phases - (modify-phases %standard-phases - (add-before 'configure 'newer-c++ - (lambda _ - (substitute* "configure" - (("-ansi") "")) - #t)) - (replace 'configure - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out")) - (gmp (assoc-ref inputs "gmp")) - (mpfr (assoc-ref inputs "mpfr")) - (ntl (assoc-ref inputs "ntl"))) - ;; Do not pass "--enable-fast-install", which makes the - ;; homebrew configure process fail. - (invoke "./configure" - (string-append "--prefix=" out) - (string-append "--with-gmp=" gmp) - (string-append "--with-mpfr=" mpfr) - (string-append "--with-ntl=" ntl)) - #t)))))) + `(#:parallel-tests? #f)) ; seems to be necessary on arm (synopsis "Fast library for number theory") (description "FLINT is a C library for number theory. It supports arithmetic @@ -470,52 +479,12 @@ fast arithmetic.") '((release-monitoring-url . "http://flintlib.org/downloads.html"))))) (define-public arb - (package - (name "arb") - (version "2.23.0") - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/fredrik-johansson/arb") - (commit version))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1m9vskyf857gbm0cbh3z8c8m6cqkqa765wb9hqmsv7yzfmklzpvn")))) - (build-system gnu-build-system) - (propagated-inputs - (list flint)) ; flint.h is included by arf.h - (inputs - (list gmp mpfr)) - (arguments - `(#:phases - (modify-phases %standard-phases - (replace 'configure - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out")) - (flint (assoc-ref inputs "flint")) - (gmp (assoc-ref inputs "gmp")) - (mpfr (assoc-ref inputs "mpfr"))) - ;; Do not pass "--enable-fast-install", which makes the - ;; homebrew configure process fail. - (invoke "./configure" - (string-append "--prefix=" out) - (string-append "--with-flint=" flint) - (string-append "--with-gmp=" gmp) - (string-append "--with-mpfr=" mpfr)))))))) - (home-page "https://arblib.org") - (synopsis "Arbitrary precision floating-point ball arithmetic") - (description - "Arb is a C library for arbitrary-precision floating-point ball -arithmetic. It supports efficient high-precision computation with -polynomials, power series, matrices and special functions over the -real and complex numbers, with automatic, rigorous error control.") - (license license:lgpl2.1+))) + (deprecated-package "arb" flint)) (define-public python-flint (package (name "python-flint") - (version "0.3.0") + (version "0.5.0") (source (origin (method git-fetch) (uri (git-reference @@ -524,15 +493,14 @@ real and complex numbers, with automatic, rigorous error control.") (file-name (git-file-name name version)) (sha256 (base32 - "1v0anazbj1cfi68nl2j6dbd31kgkc1563xmr0zk5xk3xj78569pw")) - (patches (search-patches "python-flint-includes.patch")))) + "10370kqik6q6vdqrqv3gbznsyaxbgqb3rbrff4alpw0sqr5s07c7")))) (build-system python-build-system) (native-inputs - (list python-cython)) + (list python-cython-3)) (propagated-inputs (list python-numpy)) (inputs - (list arb flint)) + (list flint)) (synopsis "Python module wrapping ARB and FLINT") (description "Python-flint is a Python extension module wrapping FLINT @@ -592,12 +560,12 @@ matrices, and polynomials over the integers and over finite fields.") (define-public singular (package (name "singular") - (version "4.2.1") + (version "4.3.2p10") (source (origin (method url-fetch) (uri - (string-append "http://www.mathematik.uni-kl.de/ftp/pub/Math/" + (string-append "https://www.singular.uni-kl.de/ftp/pub/Math/" "Singular/SOURCES/" (string-join (string-split @@ -607,7 +575,7 @@ matrices, and polynomials over the integers and over finite fields.") #\.) "-") "/singular-" version ".tar.gz")) (sha256 (base32 - "13gy1gdng8zijwlr1fn5sixw53z0zf9czzlg0vh1dcc59zw6v998")))) + "1a2j2pkp73rb1xdd5623gkk1snwd85yimssnz86y0m79zvyckhi8")))) (build-system gnu-build-system) (native-inputs (list doxygen graphviz perl)) @@ -778,6 +746,20 @@ both real and complex data (as well as of even/odd data---i.e. the discrete cosine/ sine transforms or DCT/DST).") (license license:gpl2+))) +(define-public fftw-cmake + (package/inherit fftw + ;; Cmake compiling is experimental since 2017, and it is not clear if this + ;; build has the same target-specific optimizations as the fftw gnu build. + ;; See: https://fftw.org/release-notes.html + (name "fftw-cmake") + (build-system cmake-build-system) + (arguments (default-keyword-arguments '() + '())) + (description (string-append (package-description fftw) + " This CMake build offers the file +FFTW3LibraryDepends.cmake required by some dependent packages, absent in the +gnu build version.")))) + (define-public fftwf (package/inherit fftw (name "fftwf") @@ -936,7 +918,7 @@ algorithms from the FORTRAN library MINPACK.") (define-public symengine (package (name "symengine") - (version "0.11.1") + (version "0.11.2") (source (origin (method git-fetch) @@ -945,7 +927,7 @@ algorithms from the FORTRAN library MINPACK.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "105rnnf33vx2n03wwv4962az7bfzgsn1gx6a6wyakmyrfdkb07jc")))) + (base32 "0j6vd72hjj9fnsw5iiykmkrw8vyjcyyycgib2zxlmlzi6sj4618b")))) (build-system cmake-build-system) (arguments '(#:configure-flags |