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-rw-r--r--gnu/packages/algebra.scm45
1 files changed, 14 insertions, 31 deletions
diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm
index 5673968a2c..81f644a37a 100644
--- a/gnu/packages/algebra.scm
+++ b/gnu/packages/algebra.scm
@@ -8,6 +8,7 @@
;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
;;; Copyright © 2017, 2019 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com>
;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net>
;;;
@@ -406,7 +407,7 @@ precision.")
("gsl" ,gsl)
("lapack" ,lapack)
("libao" ,ao)
- ("libjpeg" ,libjpeg)
+ ("libjpeg" ,libjpeg-turbo)
("libpng" ,libpng)
("libsamplerate" ,libsamplerate)
("libx11" ,libx11)
@@ -689,15 +690,23 @@ binary.")
(uri (string-append "mirror://gnu/bc/bc-" version ".tar.gz"))
(sha256
(base32
- "0amh9ik44jfg66csyvf4zz1l878c4755kjndq9j0270akflgrbb2"))))
+ "0amh9ik44jfg66csyvf4zz1l878c4755kjndq9j0270akflgrbb2"))
+ (patches (search-patches "bc-fix-cross-compilation.patch"))))
(build-system gnu-build-system)
(native-inputs
- `(("ed" ,ed)
+ `(("automake" ,automake)
+ ("autoconf" ,autoconf)
+ ("ed" ,ed)
("flex" ,flex)
("texinfo" ,texinfo)))
(arguments
'(#:configure-flags
- (list "--with-readline")))
+ (list "--with-readline")
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'autogen
+ (lambda _
+ (invoke "autoreconf" "-vif"))))))
(home-page "https://www.gnu.org/software/bc/")
(synopsis "Arbitrary precision numeric processing language")
(description
@@ -1216,15 +1225,6 @@ objects.")
("libtool" ,libtool)))
(propagated-inputs
`(("gmp" ,gmp))) ; gmp++.h includes gmpxx.h
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'bootstrap 'setenv
- ;; Prevent the autogen.sh script to carry out the configure
- ;; script, which has not yet been patched to replace /bin/sh.
- (lambda _
- (setenv "NOCONFIGURE" "yes")
- #t)))))
(synopsis "Algebraic computations with exact rings and fields")
(description
"Givaro is a C++ library implementing the basic arithmetic of various
@@ -1263,15 +1263,7 @@ compound objects, such as vectors, matrices and univariate polynomials.")
`(#:configure-flags
(list (string-append "--with-blas-libs="
(assoc-ref %build-inputs "openblas")
- "/lib/libopenblas.so"))
- #:phases
- (modify-phases %standard-phases
- (add-before 'bootstrap 'setenv
- ;; Prevent the autogen.sh script to carry out the configure
- ;; script, which has not yet been patched to replace /bin/sh.
- (lambda _
- (setenv "NOCONFIGURE" "yes")
- #t)))))
+ "/lib/libopenblas.so"))))
(synopsis "C++ library for linear algebra over finite fields")
(description
"FFLAS-FFPACK is a C++ template library for basic linear algebra
@@ -1307,15 +1299,6 @@ algebra, such as the row echelon form.")
("pkg-config" ,pkg-config)))
(inputs
`(("fflas-ffpack" ,fflas-ffpack)))
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-before 'bootstrap 'setenv
- ;; Prevent the autogen.sh script to carry out the configure
- ;; script, which has not yet been patched to replace /bin/sh.
- (lambda _
- (setenv "NOCONFIGURE" "yes")
- #t)))))
(synopsis "C++ library for linear algebra over exact rings")
(description
"LinBox is a C++ template library for exact linear algebra computation