diff options
-rw-r--r-- | gnu/packages/bioconductor.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 284a0e7f12..b6e2e74bfe 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -10249,6 +10249,46 @@ includes functionalities to identify cell states based on the contribution of cisTopics and explore the nature and regulatory proteins driving them.") (license license:gpl3))) +(define-public r-cistopic-next + (let ((commit "04cecbb9d1112fcc1a6edc28b5a506bcb49f2803") + (revision "1")) + (package + (inherit r-cistopic) + (name "r-cistopic-next") + ;; The DESCRIPTION file says this is version 0.3.0, which is a bit odd + ;; since the previous release is 2.1.0. Oh well. + (version (git-version "0.3.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/aertslab/cisTopic") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "11cg9szlysnsjiaahda4k5v2vh4rxx27zhz53hafgaq9mdz0kgi2")))) + (properties `((upstream-name . "cisTopic"))) + (propagated-inputs + `(("r-aucell" ,r-aucell) + ("r-data-table" ,r-data-table) + ("r-dosnow" ,r-dosnow) + ("r-dplyr" ,r-dplyr) + ("r-dt" ,r-dt) + ("r-feather" ,r-feather) + ("r-fitdistrplus" ,r-fitdistrplus) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-lda" ,r-lda) + ("r-matrix" ,r-matrix) + ("r-plyr" ,r-plyr) + ("r-rcistarget" ,r-rcistarget) + ("r-rtracklayer" ,r-rtracklayer) + ("r-s4vectors" ,r-s4vectors) + ("r-text2vec" ,r-text2vec))) + (native-inputs + `(("r-knitr" ,r-knitr)))))) + (define-public r-genie3 (package (name "r-genie3") |