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-rw-r--r--gnu/packages/bioconductor.scm90
1 files changed, 45 insertions, 45 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index befc2a9420..33f66ce8be 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -748,51 +748,6 @@ annotations.")
"This is a manifest package for Illumina's EPIC methylation arrays.")
(license license:artistic2.0)))
-;; This is a CRAN package, but it depends on Bioconductor packages.
-(define-public r-nmf
- (package
- (name "r-nmf")
- (version "0.23.0")
- (source
- (origin
- (method url-fetch)
- (uri (cran-uri "NMF" version))
- (sha256
- (base32
- "0ls7q9yc9l1z10jphq5a11wkfgcxc3gm3sfjj376zx3vnc0wl30g"))))
- (properties `((upstream-name . "NMF")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-cluster" ,r-cluster)
- ("r-biobase" ,r-biobase)
- ("r-biocmanager" ,r-biocmanager)
- ("r-bigmemory" ,r-bigmemory) ; suggested
- ("r-synchronicity" ,r-synchronicity) ; suggested
- ("r-colorspace" ,r-colorspace)
- ("r-digest" ,r-digest)
- ("r-doparallel" ,r-doparallel)
- ("r-foreach" ,r-foreach)
- ("r-ggplot2" ,r-ggplot2)
- ("r-gridbase" ,r-gridbase)
- ("r-pkgmaker" ,r-pkgmaker)
- ("r-rcolorbrewer" ,r-rcolorbrewer)
- ("r-registry" ,r-registry)
- ("r-reshape2" ,r-reshape2)
- ("r-rngtools" ,r-rngtools)
- ("r-stringr" ,r-stringr)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "http://renozao.github.io/NMF")
- (synopsis "Algorithms and framework for nonnegative matrix factorization")
- (description
- "This package provides a framework to perform Non-negative Matrix
-Factorization (NMF). The package implements a set of already published
-algorithms and seeding methods, and provides a framework to test, develop and
-plug new or custom algorithms. Most of the built-in algorithms have been
-optimized in C++, and the main interface function provides an easy way of
-performing parallel computations on multicore machines.")
- (license license:gpl2+)))
-
(define-public r-do-db
(package
(name "r-do-db")
@@ -1289,6 +1244,51 @@ the weighted combination of published signatures that, when summed, most
closely reconstructs the mutational profile.")
(license license:gpl2+)))
+;; This is a CRAN package, but it depends on Bioconductor packages.
+(define-public r-nmf
+ (package
+ (name "r-nmf")
+ (version "0.23.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "NMF" version))
+ (sha256
+ (base32
+ "0ls7q9yc9l1z10jphq5a11wkfgcxc3gm3sfjj376zx3vnc0wl30g"))))
+ (properties `((upstream-name . "NMF")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-cluster" ,r-cluster)
+ ("r-biobase" ,r-biobase)
+ ("r-biocmanager" ,r-biocmanager)
+ ("r-bigmemory" ,r-bigmemory) ; suggested
+ ("r-synchronicity" ,r-synchronicity) ; suggested
+ ("r-colorspace" ,r-colorspace)
+ ("r-digest" ,r-digest)
+ ("r-doparallel" ,r-doparallel)
+ ("r-foreach" ,r-foreach)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gridbase" ,r-gridbase)
+ ("r-pkgmaker" ,r-pkgmaker)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-registry" ,r-registry)
+ ("r-reshape2" ,r-reshape2)
+ ("r-rngtools" ,r-rngtools)
+ ("r-stringr" ,r-stringr)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "http://renozao.github.io/NMF")
+ (synopsis "Algorithms and framework for nonnegative matrix factorization")
+ (description
+ "This package provides a framework to perform Non-negative Matrix
+Factorization (NMF). The package implements a set of already published
+algorithms and seeding methods, and provides a framework to test, develop and
+plug new or custom algorithms. Most of the built-in algorithms have been
+optimized in C++, and the main interface function provides an easy way of
+performing parallel computations on multicore machines.")
+ (license license:gpl2+)))
+
(define-public r-affycomp
(package
(name "r-affycomp")