diff options
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 68f6e8d773..7fb0a7520e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13827,6 +13827,40 @@ intergenic sequences. These sequences are generated based on expression of all RNA-Seq libraries of each species integrated in Bgee.") (license license:gpl3))) +(define-public r-bgeedb + (package + (name "r-bgeedb") + (version "2.18.1") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "BgeeDB" version)) + (sha256 + (base32 + "1ziq180yfpdqwhjdzkwjjhwzn3kb0gkj6q0a26c7a30mcfb50w11")))) + (properties `((upstream-name . "BgeeDB"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-curl" ,r-curl) + ("r-data-table" ,r-data-table) + ("r-digest" ,r-digest) + ("r-dplyr" ,r-dplyr) + ("r-graph" ,r-graph) + ("r-r-utils" ,r-r-utils) + ("r-rcurl" ,r-rcurl) + ("r-rsqlite" ,r-rsqlite) + ("r-tidyr" ,r-tidyr) + ("r-topgo" ,r-topgo))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/BgeeDB/BgeeDB_R") + (synopsis "Annotation and gene expression data retrieval from Bgee database") + (description + "This package provides a package for the annotation and gene expression +data download from Bgee database, and TopAnat analysis: GO-like enrichment of +anatomical terms, mapped to genes by expression patterns.") + (license license:gpl3))) + (define-public r-tximeta (package (name "r-tximeta") |