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-rw-r--r--gnu/packages/bioconductor.scm28
1 files changed, 28 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 44bf5c7d24..6c5b633c36 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1183,6 +1183,34 @@ biscuiteer.")
chromstaR package.")
(license license:gpl3)))
+(define-public r-chromvarmotifs
+ (let ((commit "38bed559c1f4770b6c91c80bf3f8ea965da26076")
+ (revision "1"))
+ (package
+ (name "r-chromvarmotifs")
+ (version (git-version "0.2.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/GreenleafLab/chromVARmotifs")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0i9v1m1hrg1lkd2pnkj5nnrpks6vhhhpbdhsfl2lmjak4npxxr5q"))))
+ (properties `((upstream-name . "chromVARmotifs")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-tfbstools" ,r-tfbstools)))
+ (home-page "https://github.com/GreenleafLab/chromVARmotifs")
+ (synopsis "Stores motif collections for use with motifmatchr or chromVAR")
+ (description
+ "This package stores motif collections as lists of @dfn{position
+frequency matrix} (PWMatrixList) objects provided by the @code{TFBSTools}
+package for use in R with packages like @code{motifmatchr} or
+@code{chromVAR}.")
+ (license license:expat))))
+
(define-public r-copyhelper
(package
(name "r-copyhelper")