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author | Marius Bakke <mbakke@fastmail.com> | 2019-10-08 19:24:34 +0200 |
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committer | Marius Bakke <mbakke@fastmail.com> | 2019-10-08 19:24:34 +0200 |
commit | d1f3b333e6176a7879ab3742bbebb2a99f61a528 (patch) | |
tree | 8bd82ce68bd2534a48bf13c7256997f82dd1b3f4 /guix/build-system/r.scm | |
parent | e01d384efcdaf564bbb221e43b81e087c8e2af06 (diff) | |
parent | 861907f01efb1cae7f260e8cb7b991d5034a486a (diff) | |
download | guix-patches-d1f3b333e6176a7879ab3742bbebb2a99f61a528.tar guix-patches-d1f3b333e6176a7879ab3742bbebb2a99f61a528.tar.gz |
Merge branch 'master' into staging
Diffstat (limited to 'guix/build-system/r.scm')
-rw-r--r-- | guix/build-system/r.scm | 20 |
1 files changed, 14 insertions, 6 deletions
diff --git a/guix/build-system/r.scm b/guix/build-system/r.scm index e7214155be..dd2a9fe8de 100644 --- a/guix/build-system/r.scm +++ b/guix/build-system/r.scm @@ -47,14 +47,22 @@ available via the first URI, the second URI points to the archived version." (string-append "mirror://cran/src/contrib/Archive/" name "/" name "_" version ".tar.gz"))) -(define (bioconductor-uri name version) +(define* (bioconductor-uri name version #:optional type) "Return a URI string for the R package archive on Bioconductor for the release corresponding to NAME and VERSION." - (list (string-append "https://bioconductor.org/packages/release/bioc/src/contrib/" - name "_" version ".tar.gz") - ;; TODO: use %bioconductor-version from (guix import cran) - (string-append "https://bioconductor.org/packages/3.9/bioc/src/contrib/Archive/" - name "_" version ".tar.gz"))) + (let ((type-url-part (match type + ('annotation "/data/annotation") + ('experiment "/data/experiment") + (_ "/bioc")))) + (list (string-append "https://bioconductor.org/packages/release" + type-url-part + "/src/contrib/" + name "_" version ".tar.gz") + ;; TODO: use %bioconductor-version from (guix import cran) + (string-append "https://bioconductor.org/packages/3.9" + type-url-part + "/src/contrib/Archive/" + name "_" version ".tar.gz")))) (define %r-build-system-modules ;; Build-side modules imported by default. |