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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-03-05 15:02:31 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-03-05 15:04:15 +0100 |
| commit | f5c3e8e2ec9ab9e105c0b53afa0c2f5d5fa11065 (patch) | |
| tree | 309b48e2bde2fdb3f18910919be081d24de59d79 /gnu | |
| parent | c0c3f7466c733ba8abcde9cc3bd436f435faaf33 (diff) | |
| download | guix-patches-f5c3e8e2ec9ab9e105c0b53afa0c2f5d5fa11065.tar guix-patches-f5c3e8e2ec9ab9e105c0b53afa0c2f5d5fa11065.tar.gz | |
gnu: Add r-cellchat.
* gnu/packages/bioinformatics.scm (r-cellchat): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 66 |
1 files changed, 66 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d617736e57..6d21e14360 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10859,6 +10859,72 @@ explore and perform basic analysis of single cell sequencing data coming from droplet sequencing. It has been particularly tailored for Drop-seq.") (license license:gpl3)))) +(define-public r-cellchat + (let ((commit + "21edd226ca408e4c413408f98562d71ee0b54e5d") + (revision "1")) + (package + (name "r-cellchat") + (version (git-version "1.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/sqjin/CellChat") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0cvzl9mi8jjznpql2gv67swnk1dndn3a2h22z5l84h7lwpwjmh53")) + (snippet + '(for-each delete-file '("src/CellChat.so" + "src/CellChat_Rcpp.o" + "src/RcppExports.o"))))) + (properties `((upstream-name . "CellChat"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-circlize" ,r-circlize) + ("r-colorspace" ,r-colorspace) + ("r-complexheatmap" ,r-complexheatmap) + ("r-cowplot" ,r-cowplot) + ("r-dplyr" ,r-dplyr) + ("r-expm" ,r-expm) + ("r-fnn" ,r-fnn) + ("r-forcats" ,r-forcats) + ("r-future" ,r-future) + ("r-future-apply" ,r-future-apply) + ("r-gg-gap" ,r-gg-gap) + ("r-ggalluvial" ,r-ggalluvial) + ("r-ggplot2" ,r-ggplot2) + ("r-ggrepel" ,r-ggrepel) + ("r-igraph" ,r-igraph) + ("r-irlba" ,r-irlba) + ("r-magrittr" ,r-magrittr) + ("r-matrix" ,r-matrix) + ("r-nmf" ,r-nmf) + ("r-patchwork" ,r-patchwork) + ("r-pbapply" ,r-pbapply) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rcpp" ,r-rcpp) + ("r-rcppeigen" ,r-rcppeigen) + ("r-reshape2" ,r-reshape2) + ("r-reticulate" ,r-reticulate) + ("r-rspectra" ,r-rspectra) + ("r-rtsne" ,r-rtsne) + ("r-scales" ,r-scales) + ("r-shape" ,r-shape) + ("r-sna" ,r-sna) + ("r-stringr" ,r-stringr) + ("r-svglite" ,r-svglite))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/sqjin/CellChat") + (synopsis "Analysis of cell-cell communication from single-cell transcriptomics data") + (description + "This package infers, visualizes and analyzes the cell-cell +communication networks from scRNA-seq data.") + (license license:gpl3)))) + (define-public sambamba (package (name "sambamba") |