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author | Ricardo Wurmus <rekado@elephly.net> | 2016-11-24 15:24:25 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2016-11-28 22:43:17 +0100 |
commit | 2d9fb1702fb0d142e83cfbf949f9330981ed9687 (patch) | |
tree | 0fea5c47cf2b1bac0a20cfe45042b8548a0a6df2 /gnu | |
parent | c827f2028629c43f73aee99600d34fc97fca4208 (diff) | |
download | guix-patches-2d9fb1702fb0d142e83cfbf949f9330981ed9687.tar guix-patches-2d9fb1702fb0d142e83cfbf949f9330981ed9687.tar.gz |
gnu: Add r-seqgl.
* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
Diffstat (limited to 'gnu')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 73e1d09b89..5f63707bf8 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7613,6 +7613,36 @@ must be built and this dictionary can be used for determining kernels for DNA Sequences.") (license license:gpl2+)))) +(define-public r-seqgl + (package + (name "r-seqgl") + (version "1.1.4") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/ManuSetty/SeqGL/" + "archive/" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0pnk1p3sci5yipyc8xnb6jbmydpl80fld927xgnbcv104hy8h8yh")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biostrings" ,r-biostrings) + ("r-chipkernels" ,r-chipkernels) + ("r-genomicranges" ,r-genomicranges) + ("r-spams" ,r-spams) + ("r-wgcna" ,r-wgcna) + ("r-fastcluster" ,r-fastcluster))) + (home-page "https://github.com/ManuSetty/SeqGL") + (synopsis "Group lasso for Dnase/ChIP-seq data") + (description "SeqGL is a group lasso based algorithm to extract +transcription factor sequence signals from ChIP, DNase and ATAC-seq profiles. +This package presents a method which uses group lasso to discriminate between +bound and non bound genomic regions to accurately identify transcription +factors bound at the specific regions.") + (license license:gpl2+))) + (define-public emboss (package (name "emboss") |