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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-11-17 17:52:18 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-11-17 20:45:58 +0000 |
| commit | 30474f25d0c85c2604003ffa7bcef396f58d97a9 (patch) | |
| tree | d0b5d839f983e18472829cfa9ad8df43aa051a13 /gnu | |
| parent | 7850856591e91850237e163ba9d39509ced718ed (diff) | |
| download | guix-patches-30474f25d0c85c2604003ffa7bcef396f58d97a9.tar guix-patches-30474f25d0c85c2604003ffa7bcef396f58d97a9.tar.gz | |
gnu: python-numcodecs: Unbundle c-blosc.
* gnu/packages/python-xyz.scm (python-numcodecs)[source]: Add snippet to
remove bundled c-blosc sources and pre-built Cython files.
[arguments]: Add build phase 'disable-avx2 and 'unbundle; replace 'check phase
to run pytest; disable tests.
[inputs]: Add c-blosc, lz4, zlib, and zstd.
[native-inputs]: Add python-cython.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/python-xyz.scm | 44 |
1 files changed, 42 insertions, 2 deletions
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 4623c7b3b2..0639f3680b 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -22098,13 +22098,53 @@ tool).") (uri (pypi-uri "numcodecs" version)) (sha256 (base32 - "0kbfr8pl3x9glsypbq8hzim003f16ml1b1cvgrh4w1sdvgal6j7g")))) + "0kbfr8pl3x9glsypbq8hzim003f16ml1b1cvgrh4w1sdvgal6j7g")) + (modules '((guix build utils))) + (snippet + '(begin + (delete-file-recursively "c-blosc") + (for-each delete-file '("numcodecs/blosc.c" + "numcodecs/compat_ext.c" + "numcodecs/lz4.c" + "numcodecs/vlen.c" + "numcodecs/zstd.c")))))) (build-system python-build-system) + (arguments + `(#:tests? #false ; TODO: unclear why numcodecs.* are not found + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'disable-avx2 + (lambda _ + (setenv "DISABLE_NUMCODECS_AVX2" "1"))) + (add-after 'unpack 'unbundle + (lambda _ + (substitute* "setup.py" + (("sources=sources \\+ blosc_sources,") + "sources=sources,") + (("extra_compile_args=extra_compile_args") + "extra_compile_args=list(base_compile_args)") + (("'numcodecs.zstd',") + "'numcodecs.zstd', libraries=['zstd'], ") + (("'numcodecs.lz4',") + "'numcodecs.lz4', libraries=['lz4'], ") + (("'numcodecs.blosc',") + "'numcodecs.blosc', libraries=['blosc'], ")))) + (replace 'check + (lambda* (#:key tests? inputs outputs #:allow-other-keys) + (when tests? + (add-installed-pythonpath inputs outputs) + (invoke "pytest" "-vv"))))))) + (inputs + `(("c-blosc" ,c-blosc) + ("lz4" ,lz4) + ("zlib" ,zlib) + ("zstd" ,zstd "lib"))) (propagated-inputs `(("python-numpy" ,python-numpy) ("python-msgpack" ,python-msgpack))) (native-inputs - `(("python-pytest" ,python-pytest) + `(("python-cython" ,python-cython) + ("python-pytest" ,python-pytest) ("python-setuptools-scm" ,python-setuptools-scm))) (home-page "https://github.com/zarr-developers/numcodecs") (synopsis "Buffer compression and transformation codecs") |