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| author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2022-04-17 17:10:46 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-05-02 15:17:28 +0200 |
| commit | 9c19db8c1d848412697b0b47ff6e878248de1944 (patch) | |
| tree | 9429b9ab317f471d372e61d3a89bda89d68e88a3 /gnu/packages | |
| parent | 495bc9f9623303dbacd26f7f6109b99277aa32d8 (diff) | |
| download | guix-patches-9c19db8c1d848412697b0b47ff6e878248de1944.tar guix-patches-9c19db8c1d848412697b0b47ff6e878248de1944.tar.gz | |
gnu: Add r-adductomicsr.
* gnu/packages/bioconductor.scm (r-adductomicsr): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index f0462a5368..2db0ab3752 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1899,6 +1899,51 @@ but which also provides utilities which may be useful for other platforms.") ;; GPLv3. (license license:gpl3))) +(define-public r-adductomicsr + (package + (name "r-adductomicsr") + (version "1.10.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "adductomicsR" version)) + (sha256 + (base32 + "0cnvxrk0h3r6jpa4g4qismg6zk5c7rf8lqixg89c24i98gffkbcl")))) + (properties `((upstream-name . "adductomicsR"))) + (build-system r-build-system) + (propagated-inputs + (list r-adductdata + r-ade4 + r-annotationhub + r-bootstrap + r-data-table + r-dosnow + r-dplyr + r-dt + r-experimenthub + r-fastcluster + r-foreach + r-fpc + r-mzr + r-orgmassspecr + r-pastecs + r-pracma + r-rcppeigen + r-reshape2 + r-rvest + r-smoother + r-zoo)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/adductomicsR") + (synopsis "Processing of adductomic mass spectral datasets") + (description + "This package @code{adductomicsR} processes data generated by the +@dfn{second stage of mass spectrometry} (MS2) to identify potentially adducted +peptides from spectra that has been corrected for mass drift and retention +time drift and quantifies level mass spectral peaks from @dfn{first stage of +mass spectrometry} (MS1) data.") + (license license:artistic2.0))) + (define-public r-aneufinder (package (name "r-aneufinder") |