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| author | Ricardo Wurmus <rekado@elephly.net> | 2021-10-24 21:35:57 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-10-24 21:35:57 +0000 |
| commit | 43927832324872e4d1f547ad5c43df76bb58bbf3 (patch) | |
| tree | 4755a75b72be1077e76dff449d83d577ce81fbf9 /gnu/packages | |
| parent | 57c233b37b53a551ce359fed5542dc1ed2b5e75d (diff) | |
| download | guix-patches-43927832324872e4d1f547ad5c43df76bb58bbf3.tar guix-patches-43927832324872e4d1f547ad5c43df76bb58bbf3.tar.gz | |
gnu: sailfish: Do not attempt to unpack a directory.
patch-and-repack no longer outputs a compressed archive when the input was a
directory.
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Adjust build phase
'prepare-rapmap.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 10 |
1 files changed, 2 insertions, 8 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f559d9cef7..72336e8324 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -9581,18 +9581,12 @@ dependency like SeqAn.") (let ((src "external/install/src/rapmap/") (include "external/install/include/rapmap/") (rapmap (assoc-ref inputs "rapmap"))) - (mkdir-p "/tmp/rapmap") - (invoke "tar" "xf" - (assoc-ref inputs "rapmap") - "-C" "/tmp/rapmap" - "--strip-components=1") (mkdir-p src) (mkdir-p include) (for-each (lambda (file) (install-file file src)) - (find-files "/tmp/rapmap/src" "\\.(c|cpp)")) - (copy-recursively "/tmp/rapmap/include" include)) - #t)) + (find-files (string-append rapmap "/src") "\\.(c|cpp)")) + (copy-recursively (string-append rapmap "/include") include)))) (add-after 'unpack 'use-system-libraries (lambda* (#:key inputs #:allow-other-keys) (substitute* '("src/SailfishIndexer.cpp" |