Merge branch 'core-updates' into core-updates-next

175 files changed, 11418 insertions, 5612 deletions

diff --git a/gnu/packages/abiword.scm b/gnu/packages/abiword.scm
index cf906c6ea4..02f132f6f0 100644
--- a/gnu/packages/abiword.scm
+++ b/gnu/packages/abiword.scm
@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2014 Marek Benc <merkur32@gmail.com>
-;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2017 Leo Famulari <leo@famulari.name>
 ;;;
@@ -62,7 +62,7 @@
     (build-system glib-or-gtk-build-system)
     (arguments                   ;; NOTE: rsvg is disabled, since Abiword
       `(#:configure-flags        ;; supports it directly, and its BS is broken.
-        (list
+        (list                    ;; wmf was removed from Guix for security.
           "--enable-clipart"     ;; TODO: The following plugins have unresolved
           "--enable-templates"   ;; dependencies: aiksaurus, grammar, wpg, gda,
           (string-append         ;; wordperfect, psion, mathview.
@@ -73,7 +73,7 @@
               "latex " "loadbindings " "mht " "mif " "mswrite " "opendocument "
               "openwriter " "openxml " "opml " "ots " "paint " "passepartout "
               "pdb " "pdf " "presentation " "s5 " "sdw " "t602 " "urldict "
-              "wikipedia " "wmf " "wml " "xslfo"))
+              "wikipedia " "wml " "xslfo"))
         ;; tests fail with: Gtk-CRITICAL **: gtk_settings_get_for_screen:
         ;;                  assertion 'GDK_IS_SCREEN (screen)' failed
         ;;                  GLib-GObject-CRITICAL **: g_object_get_qdata:
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm
index e7e34ab97f..fa60cadd01 100644
--- a/gnu/packages/admin.scm
+++ b/gnu/packages/admin.scm
@@ -173,14 +173,14 @@ and provides a \"top-like\" mode (monitoring).")
 (define-public shepherd
   (package
     (name "shepherd")
-    (version "0.4.0")
+    (version "0.5.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://alpha.gnu.org/gnu/shepherd/shepherd-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "1lgmsbxn8i8xdasxzkdp2cml75n128pplw6icvmspl6s0n9xmw8n"))))
+                "1wmciqml9yplnx1s4ynn00giqyk06rbrcsgvpjj2df47sawk2jp8"))))
     (build-system gnu-build-system)
     (arguments
      '(#:configure-flags '("--localstatedir=/var")))
@@ -613,7 +613,7 @@ connection alive.")
          (bind-minor-version "11")
          (bind-patch-version "4")
          (bind-release-type "-P")         ; for patch release, use "-P"
-         (bind-release-version "1")      ; for patch release, e.g. "6"
+         (bind-release-version "2")      ; for patch release, e.g. "6"
          (bind-version (string-append bind-major-version
                                       "."
                                       bind-minor-version
@@ -730,7 +730,7 @@ connection alive.")
                                         "/bind-" bind-version ".tar.gz"))
                     (sha256
                      (base32
-                      "08zyy13b8ydfbg26b3y6mw299qs89ba90gymraqqjsgjicydrq5h"))))
+                      "04fq17zksd2b3w6w6padps5n7b6s2lasxpksbhl4378h56vgfnm8"))))
 
                 ;; When cross-compiling, we need the cross Coreutils and sed.
                 ;; Otherwise just use those from %FINAL-INPUTS.
@@ -869,7 +869,7 @@ over ssh connections.")
 (define-public rename
   (package
     (name "rename")
-    (version "0.35")
+    (version "1.00")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -877,8 +877,24 @@ over ssh connections.")
                     version ".tar.gz"))
               (sha256
                (base32
-                "052iqmn7ya3w1nadpiyavmr3rx566r0lbflx94y8b5wx9q5c16rq"))))
+                "03yhf8nmqsb0zyliv501fdvwlp589jqfn44yqkrflmpzrbik3zxl"))))
     (build-system perl-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'install 'find-itself
+           ;; Fix run-time 'Can't locate File/Rename.pm in @INC' failure.
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (bin (string-append out "/bin")))
+               (with-directory-excursion bin
+                 (for-each
+                  (lambda (program)
+                    (wrap-program program
+                      `("PERL5LIB" ":" prefix
+                        (,(string-append out "/lib/perl5/site_perl")))))
+                  (find-files "." ".*")))
+               #t))))))
     (native-inputs
      `(("perl-module-build" ,perl-module-build)
        ("perl-test-pod" ,perl-test-pod)
@@ -1178,9 +1194,6 @@ This package provides the 'wpa_supplicant' daemon and the 'wpa_cli' command.")
                     (lambda* (#:key inputs outputs #:allow-other-keys)
                       (let ((out (assoc-ref outputs "out"))
                             (qt '("qtbase" "qtsvg")))
-                        (substitute* "wpa_gui.desktop"
-                          (("Exec=wpa_gui")
-                           (string-append "Exec=" out "/bin/wpa_gui")))
                         (install-file "wpa_gui" (string-append out "/bin"))
                         (install-file "wpa_gui.desktop"
                                       (string-append out "/share/applications"))
diff --git a/gnu/packages/agda.scm b/gnu/packages/agda.scm
index df4968c445..d2113555eb 100644
--- a/gnu/packages/agda.scm
+++ b/gnu/packages/agda.scm
@@ -1,5 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2018 Alex ter Weele <alex.ter.weele@gmail.com>
+;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -30,7 +32,7 @@
 (define-public agda
   (package
     (name "agda")
-    (version "2.5.3")
+    (version "2.5.4.1")
     (source
      (origin
        (method url-fetch)
@@ -39,7 +41,7 @@
              version ".tar.gz"))
        (sha256
         (base32
-         "0r80vw7vnvbgq47y50v050malv7zvv2p2kg6f47i04r0b2ix855a"))))
+         "0bxpibsk98n9xp42d92ma5vj2fam8rsnl61fbhr3askfjdvalnbp"))))
     (build-system haskell-build-system)
     (inputs
      `(("cpphs" ,cpphs)
@@ -51,14 +53,13 @@
        ("ghc-edisoncore" ,ghc-edisoncore)
        ("ghc-edit-distance" ,ghc-edit-distance)
        ("ghc-equivalence" ,ghc-equivalence)
+       ("ghc-filemanip" ,ghc-filemanip)
        ("ghc-geniplate-mirror" ,ghc-geniplate-mirror)
        ("ghc-gitrev" ,ghc-gitrev)
        ("ghc-happy" ,ghc-happy)
        ("ghc-hashable" ,ghc-hashable)
        ("ghc-hashtables" ,ghc-hashtables)
        ("ghc-ieee754" ,ghc-ieee754)
-       ("ghc-monadplus" ,ghc-monadplus)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-murmur-hash" ,ghc-murmur-hash)
        ("ghc-uri-encode" ,ghc-uri-encode)
        ("ghc-parallel" ,ghc-parallel)
@@ -71,9 +72,50 @@
     (arguments
      `(#:modules ((guix build haskell-build-system)
                   (guix build utils)
-                  (srfi srfi-26))
+                  (srfi srfi-26)
+                  (ice-9 match))
        #:phases
        (modify-phases %standard-phases
+         ;; FIXME: This is a copy of the standard configure phase with a tiny
+         ;; difference: this package needs the -package-db flag to be passed
+         ;; to "runhaskell" in addition to the "configure" action, because
+         ;; Setup.hs depends on filemanip.  Without this option the Setup.hs
+         ;; file cannot be evaluated.  The haskell-build-system should be
+         ;; changed to pass "-package-db" to "runhaskell" in any case.
+         (replace 'configure
+           (lambda* (#:key outputs inputs tests? (configure-flags '())
+                     #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (name-version (strip-store-file-name out))
+                    (input-dirs (match inputs
+                                  (((_ . dir) ...)
+                                   dir)
+                                  (_ '())))
+                    (ghc-path (getenv "GHC_PACKAGE_PATH"))
+                    (params (append `(,(string-append "--prefix=" out))
+                                    `(,(string-append "--libdir=" out "/lib"))
+                                    `(,(string-append "--bindir=" out "/bin"))
+                                    `(,(string-append
+                                        "--docdir=" out
+                                        "/share/doc/" name-version))
+                                    '("--libsubdir=$compiler/$pkg-$version")
+                                    '("--package-db=../package.conf.d")
+                                    '("--global")
+                                    `(,@(map
+                                         (cut string-append "--extra-include-dirs=" <>)
+                                         (search-path-as-list '("include") input-dirs)))
+                                    `(,@(map
+                                         (cut string-append "--extra-lib-dirs=" <>)
+                                         (search-path-as-list '("lib") input-dirs)))
+                                    (if tests?
+                                        '("--enable-tests")
+                                        '())
+                                    configure-flags)))
+               (unsetenv "GHC_PACKAGE_PATH")
+               (apply invoke "runhaskell" "-package-db=../package.conf.d"
+                      "Setup.hs" "configure" params)
+               (setenv "GHC_PACKAGE_PATH" ghc-path)
+               #t)))
          (add-after 'compile 'agda-compile
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((out (assoc-ref outputs "out"))
diff --git a/gnu/packages/android.scm b/gnu/packages/android.scm
index 53d7d8d441..9f8d850ff5 100644
--- a/gnu/packages/android.scm
+++ b/gnu/packages/android.scm
@@ -863,14 +863,14 @@ useful for reverse engineering, analysis of Android applications and more.")
 (define-public fdroidserver
   (package
     (name "fdroidserver")
-    (version "1.0.9")
+    (version "1.0.10")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "fdroidserver" version))
         (sha256
          (base32
-          "0cwb1fmindw6v9jkiim9yn3496rk1pvnk94s1r0vz2hxgz16xp7n"))))
+          "0n6kkby65qzqdx1jn72grfffvr1w1j1rby5pwm9z8rymmsh8s0pm"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 88e3723a1f..3c8b9cc8df 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -68,7 +68,7 @@ in FITS files.")
 (define-public wcslib
   (package
     (name "wcslib")
-    (version "5.18")
+    (version "5.20")
     (source
      (origin
        (method url-fetch)
@@ -76,7 +76,7 @@ in FITS files.")
              "ftp://ftp.atnf.csiro.au/pub/software/wcslib/" name "-" version
              ".tar.bz2"))
        (sha256
-        (base32 "16jh568k99c9p0y3qzcgps2rii933x9wlay7q1xm0lr59zqzp4xn"))))
+        (base32 "1c8g9kv4dxrnawnqi4spi2p10s2xs7x75pdfxhbqxgcc97dkgh0b"))))
     (inputs
      `(("cfitsio" ,cfitsio)))
     (build-system gnu-build-system)
@@ -89,8 +89,7 @@ in FITS files.")
                (("/bin/sh") "sh"))
              #t))
          (delete 'install-license-files)) ; installed by ‘make install’
-       ;; Both the build and tests fail randomly when run in parallel.
-       #:parallel-build? #f
+       ;; Parallel execution of the test suite is not supported.
        #:parallel-tests? #f))
     (home-page "https://www.atnf.csiro.au/people/mcalabre/WCS")
     (synopsis "Library which implements the FITS WCS standard")
diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm
index 42ba2d3a7e..b664712f7a 100644
--- a/gnu/packages/audio.scm
+++ b/gnu/packages/audio.scm
@@ -13,6 +13,8 @@
 ;;; Copyright © 2018 okapi <okapi@firemail.cc>
 ;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com>
 ;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
+;;; Copyright © 2018 Brett Gilio <brettg@posteo.net>
+;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -291,12 +293,14 @@ engineers, musicians, soundtrack editors and composers.")
     (version "2.2.2")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append "https://github.com/audacity/audacity/archive"
-                           "/Audacity-" version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/audacity/audacity.git")
+             (commit (string-append "Audacity-" version))))
+       (file-name (git-file-name name version))
        (sha256
         (base32
-         "18q7i77ynihx7xp45lz2lv0k0wrh6736pcrivlpwrxjgbvyqx7km"))
+         "10maxmjxbmjybj7n4m7a9bbm7g8xxw8f8vbsf7c9ih5j2gr15ihs"))
        (patches (search-patches "audacity-build-with-system-portaudio.patch"))
        (modules '((guix build utils)))
        (snippet
@@ -321,7 +325,7 @@ engineers, musicians, soundtrack editors and composers.")
               ;; "sbsms"
               ))
            #t))))
-    (build-system gnu-build-system)
+    (build-system glib-or-gtk-build-system)
     (inputs
      `(("wxwidgets" ,wxwidgets)
        ("gtk+" ,gtk+)
@@ -410,21 +414,12 @@ engineers, musicians, soundtrack editors and composers.")
                (("../lib-src/portmidi/porttime/porttime.h") "porttime.h"))
              (substitute* "src/prefs/MidiIOPrefs.cpp"
                (("../../lib-src/portmidi/pm_common/portmidi.h") "portmidi.h"))
-             #t))
-         (add-after 'install 'wrap-program
-           (lambda* (#:key inputs outputs #:allow-other-keys)
-             (wrap-program (string-append (assoc-ref outputs "out")
-                                          "/bin/audacity")
-               ;; For GtkFileChooserDialog.
-               `("GSETTINGS_SCHEMA_DIR" =
-                 (,(string-append (assoc-ref inputs "gtk+")
-                                  "/share/glib-2.0/schemas"))))
              #t)))
        ;; The test suite is not "well exercised" according to the developers,
        ;; and fails with various errors.  See
        ;; <http://sourceforge.net/p/audacity/mailman/message/33524292/>.
        #:tests? #f))
-    (home-page "http://audacity.sourceforge.net/")
+    (home-page "https://www.audacityteam.org/")
     (synopsis "Software for recording and editing sounds")
     (description
      "Audacity is a multi-track audio editor designed for recording, playing
@@ -453,7 +448,14 @@ tools.")
              "CXXFLAGS=-std=gnu++11"
              "CFLAGS=-std=gnu++11"
              (string-append "prefix=" %output)
-             (string-append "pkgdatadir=" %output "/share/azr3-jack"))))
+             (string-append "pkgdatadir=" %output "/share/azr3-jack"))
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'install 'fix-timestamp
+           (lambda _
+             (let ((early-1980 315619200)) ; 1980-01-02 UTC
+               (utime "azr3.1" early-1980 early-1980))
+             #t)))))
     (inputs
      `(("gtkmm" ,gtkmm-2)
        ("lvtk" ,lvtk)
@@ -650,7 +652,7 @@ emulation (valve, tape), bit fiddling (decimator, pointer-cast), etc.")
 (define-public csound
   (package
     (name "csound")
-    (version "6.09.1")
+    (version "6.11.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -659,7 +661,7 @@ emulation (valve, tape), bit fiddling (decimator, pointer-cast), etc.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0xqpqws4jsv7fyawcjzwaw544qbfh29xq164kdf30a9v1n3yklp4"))))
+                "072pk5h9w0vhw0ncc9dn90haw1yv18v04iwwjn8nsp6930w7dvxd"))))
     (build-system cmake-build-system)
     (inputs
      `(("alsa-lib" ,alsa-lib)
@@ -674,7 +676,7 @@ emulation (valve, tape), bit fiddling (decimator, pointer-cast), etc.")
      `(("bison" ,bison)
        ("flex" ,flex)
        ("zlib" ,zlib)))
-    (home-page "http://csound.github.io/")
+    (home-page "https://csound.com/")
     (synopsis "Sound and music computing system")
     (description
      "Csound is a user-programmable and user-extensible sound processing
@@ -1040,7 +1042,7 @@ follower.")
 (define-public fluidsynth
   (package
     (name "fluidsynth")
-    (version "1.1.11")
+    (version "2.0.1")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1049,7 +1051,7 @@ follower.")
               (file-name (string-append name "-" version "-checkout"))
               (sha256
                (base32
-                "0n75jq3xgq46hfmjkaaxz3gic77shs4fzajq40c8gk043i84xbdh"))))
+                "1mqyym5qkh8xd1rqj3yhfxbw5dxjcrljb6nkfqzvcarlv4h6rjn7"))))
     (build-system cmake-build-system)
     (arguments
      '(#:tests? #f                      ; no check target
@@ -1081,6 +1083,22 @@ device.  It is the software analogue of a MIDI synthesizer.  FluidSynth can
 also play midifiles using a Soundfont.")
     (license license:lgpl2.1+)))
 
+;; gzdoom@3.3.0 and lmms@1.1.3 requires this version.  Remove once no longer
+;; needed.
+(define-public fluidsynth-1
+  (package
+    (inherit fluidsynth)
+    (version "1.1.11")
+    (source (origin
+              (inherit (package-source fluidsynth))
+              (uri (git-reference
+                    (url "https://github.com/FluidSynth/fluidsynth")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name "fluidsynth" version))
+              (sha256
+               (base32
+                "0n75jq3xgq46hfmjkaaxz3gic77shs4fzajq40c8gk043i84xbdh"))))))
+
 (define-public faad2
   (package
     (name "faad2")
@@ -1911,15 +1929,15 @@ lv2-c++-tools.")
 (define-public openal
   (package
     (name "openal")
-    (version "1.19.0")
+    (version "1.19.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "http://kcat.strangesoft.net/openal-releases/openal-soft-"
+                    "http://openal-soft.org/openal-releases/openal-soft-"
                     version ".tar.bz2"))
               (sha256
                (base32
-                "1mhf5bsb58s1xk6hvxl7ly7rd4rpl9z8h07xl1q94brywykg7bgi"))))
+                "1sdjhkz2gd6lbnwphi1b6aw3br4wv2lik5vnqh6mxfc8a7zqfbsw"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f  ; no check target
@@ -1952,7 +1970,7 @@ emitters are among the features handled by the API.  More advanced effects,
 including air absorption, occlusion, and environmental reverb, are available
 through the EFX extension.  It also facilitates streaming audio, multi-channel
 buffers, and audio capture.")
-    (home-page "http://kcat.strangesoft.net/openal.html")
+    (home-page "http://openal-soft.org/")
     (license license:lgpl2.0+)))
 
 (define-public freealut
@@ -2015,14 +2033,14 @@ and ALSA.")
 (define-public qjackctl
   (package
     (name "qjackctl")
-    (version "0.5.3")
+    (version "0.5.4")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/qjackctl/qjackctl/"
                                   version "/qjackctl-" version ".tar.gz"))
               (sha256
                (base32
-                "0x08af8m5l8qy9av3dlldsg58ny9nc69h1s4i6hqkvj24jwy6fw1"))))
+                "0qr71nb93gkz5q53nfcl5g168z173wc6s8w1yjs3rfn3m4hg0bcq"))))
     (build-system gnu-build-system)
     (arguments
      '(#:tests? #f))                    ; no check target
@@ -2244,7 +2262,7 @@ aimed at audio/musical applications.")
        ("vamp" ,vamp)))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
-    (home-page "http://breakfastquay.com/rubberband/")
+    (home-page "https://breakfastquay.com/rubberband/")
     (synopsis "Audio time-stretching and pitch-shifting library")
     (description
      "Rubber Band is a library and utility program that permits changing the
@@ -2760,7 +2778,7 @@ interface.")
 (define-public qsynth
   (package
     (name "qsynth")
-    (version "0.5.2")
+    (version "0.5.3")
     (source
      (origin
        (method url-fetch)
@@ -2768,7 +2786,7 @@ interface.")
                            "/qsynth-" version ".tar.gz"))
        (sha256
         (base32
-         "1rfkaxq1pyc4hv3l0i6wicianbcbm1wp53kh9i5d4jsljgisd1dv"))))
+         "1jghczmmva7cyavg1q0j8nr3hmjpzzglzi5ckg92ax4ji8gpks9c"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f                      ; no "check" phase
@@ -3089,7 +3107,7 @@ with support for HD extensions.")
 (define-public bs1770gain
   (package
     (name "bs1770gain")
-    (version "0.4.12")
+    (version "0.5.0")
     (source
      (origin
        (method url-fetch)
@@ -3097,7 +3115,7 @@ with support for HD extensions.")
                            version "/bs1770gain-" version ".tar.gz"))
        (sha256
         (base32
-         "0n9skdap1vnl6w52fx0gsrjlk7w3xgdwi62ycyf96h29rx059z6a"))))
+         "0vd7320k7s2zcn2vganclxbr1vav18ghld27rcwskvcc3dm8prii"))))
     (build-system gnu-build-system)
     (inputs `(("ffmpeg" ,ffmpeg)
               ("sox" ,sox)))
diff --git a/gnu/packages/augeas.scm b/gnu/packages/augeas.scm
index 9495d4a0a4..fcba5bae7b 100644
--- a/gnu/packages/augeas.scm
+++ b/gnu/packages/augeas.scm
@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
-;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017 Eric Bavier <bavier@member.fsf.org>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -32,24 +32,14 @@
 (define-public augeas
   (package
     (name "augeas")
-    (version "1.10.1")
+    (version "1.11.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://download.augeas.net/augeas-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0k9nssn7lk58cl5zv3c8kv2zx9cm2yks3sj7q4fd6qdjz9m2bnsj"))
-              (modules '((guix build utils)))
-              (snippet
-               '(begin
-                  ;; The gnulib test-lock test is prone to writer starvation
-                  ;; with our glibc@2.25, which prefers readers, so disable it.
-                  ;; The gnulib commit b20e8afb0b2 should fix this once
-                  ;; incorporated here.
-                  (substitute* "gnulib/tests/Makefile.in"
-                    (("test-lock\\$\\(EXEEXT\\) ") ""))
-                  #t))))
+                "1c507qj6dfn2dnsl27w94zs9r45xrgm07y8bqba9ry2s0psfhg1r"))))
     (build-system gnu-build-system)
     ;; Marked as "required" in augeas.pc
     (propagated-inputs
diff --git a/gnu/packages/aux-files/linux-libre/4.18-arm64.conf b/gnu/packages/aux-files/linux-libre/4.18-arm64.conf
index ab30f51d2e..64b14b52c0 100644
--- a/gnu/packages/aux-files/linux-libre/4.18-arm64.conf
+++ b/gnu/packages/aux-files/linux-libre/4.18-arm64.conf
@@ -1,6 +1,6 @@
 #
 # Automatically generated file; DO NOT EDIT.
-# Linux/arm64 4.18.0-gnu Kernel Configuration
+# Linux/arm64 4.18.14-gnu Kernel Configuration
 #
 CONFIG_ARM64=y
 CONFIG_64BIT=y
@@ -481,7 +481,7 @@ CONFIG_HOTPLUG_PCI=y
 CONFIG_HOTPLUG_PCI_ACPI=y
 CONFIG_HOTPLUG_PCI_ACPI_IBM=m
 CONFIG_HOTPLUG_PCI_CPCI=y
-# CONFIG_HOTPLUG_PCI_SHPC is not set
+CONFIG_HOTPLUG_PCI_SHPC=y
 
 #
 # PCI controller drivers
diff --git a/gnu/packages/aux-files/linux-libre/4.18-i686.conf b/gnu/packages/aux-files/linux-libre/4.18-i686.conf
index 606616b9fa..859b8b10b6 100644
--- a/gnu/packages/aux-files/linux-libre/4.18-i686.conf
+++ b/gnu/packages/aux-files/linux-libre/4.18-i686.conf
@@ -1,6 +1,6 @@
 #
 # Automatically generated file; DO NOT EDIT.
-# Linux/x86 4.18.0-gnu Kernel Configuration
+# Linux/x86 4.18.9-gnu Kernel Configuration
 #
 
 #
@@ -255,6 +255,7 @@ CONFIG_PROFILING=y
 CONFIG_TRACEPOINTS=y
 CONFIG_CRASH_CORE=y
 CONFIG_KEXEC_CORE=y
+CONFIG_HOTPLUG_SMT=y
 CONFIG_OPROFILE=m
 # CONFIG_OPROFILE_EVENT_MULTIPLEX is not set
 CONFIG_HAVE_OPROFILE=y
@@ -294,6 +295,7 @@ CONFIG_HAVE_PERF_REGS=y
 CONFIG_HAVE_PERF_USER_STACK_DUMP=y
 CONFIG_HAVE_ARCH_JUMP_LABEL=y
 CONFIG_HAVE_RCU_TABLE_FREE=y
+CONFIG_HAVE_RCU_TABLE_INVALIDATE=y
 CONFIG_ARCH_HAVE_NMI_SAFE_CMPXCHG=y
 CONFIG_HAVE_ALIGNED_STRUCT_PAGE=y
 CONFIG_HAVE_CMPXCHG_LOCAL=y
@@ -853,7 +855,7 @@ CONFIG_HOTPLUG_PCI_ACPI_IBM=m
 CONFIG_HOTPLUG_PCI_CPCI=y
 CONFIG_HOTPLUG_PCI_CPCI_ZT5550=m
 CONFIG_HOTPLUG_PCI_CPCI_GENERIC=m
-# CONFIG_HOTPLUG_PCI_SHPC is not set
+CONFIG_HOTPLUG_PCI_SHPC=y
 
 #
 # PCI controller drivers
diff --git a/gnu/packages/aux-files/linux-libre/4.18-x86_64.conf b/gnu/packages/aux-files/linux-libre/4.18-x86_64.conf
index 81fd822756..2a66c483d6 100644
--- a/gnu/packages/aux-files/linux-libre/4.18-x86_64.conf
+++ b/gnu/packages/aux-files/linux-libre/4.18-x86_64.conf
@@ -1,6 +1,6 @@
 #
 # Automatically generated file; DO NOT EDIT.
-# Linux/x86 4.18.0-gnu Kernel Configuration
+# Linux/x86 4.18.9-gnu Kernel Configuration
 #
 
 #
@@ -265,6 +265,7 @@ CONFIG_PROFILING=y
 CONFIG_TRACEPOINTS=y
 CONFIG_CRASH_CORE=y
 CONFIG_KEXEC_CORE=y
+CONFIG_HOTPLUG_SMT=y
 CONFIG_OPROFILE=m
 # CONFIG_OPROFILE_EVENT_MULTIPLEX is not set
 CONFIG_HAVE_OPROFILE=y
@@ -304,6 +305,7 @@ CONFIG_HAVE_PERF_REGS=y
 CONFIG_HAVE_PERF_USER_STACK_DUMP=y
 CONFIG_HAVE_ARCH_JUMP_LABEL=y
 CONFIG_HAVE_RCU_TABLE_FREE=y
+CONFIG_HAVE_RCU_TABLE_INVALIDATE=y
 CONFIG_ARCH_HAVE_NMI_SAFE_CMPXCHG=y
 CONFIG_HAVE_ALIGNED_STRUCT_PAGE=y
 CONFIG_HAVE_CMPXCHG_LOCAL=y
@@ -869,7 +871,7 @@ CONFIG_HOTPLUG_PCI_ACPI_IBM=m
 CONFIG_HOTPLUG_PCI_CPCI=y
 CONFIG_HOTPLUG_PCI_CPCI_ZT5550=m
 CONFIG_HOTPLUG_PCI_CPCI_GENERIC=m
-# CONFIG_HOTPLUG_PCI_SHPC is not set
+CONFIG_HOTPLUG_PCI_SHPC=y
 
 #
 # PCI controller drivers
diff --git a/gnu/packages/backup.scm b/gnu/packages/backup.scm
index ea5bc8e398..52afcbc676 100644
--- a/gnu/packages/backup.scm
+++ b/gnu/packages/backup.scm
@@ -498,6 +498,7 @@ detection, and lossless compression.")
      (origin
        (method url-fetch)
        (uri (pypi-uri "borgbackup" version))
+       (patches (search-patches "borg-respect-storage-quota.patch"))
        (sha256
         (base32
          "1p3zia62vyg9vadkdjzzkzbj4dmgijr7ix5lmhfbxpwy5q9imdgp"))
@@ -861,7 +862,7 @@ is like a time machine for your data. ")
 (define-public restic
   (package
     (name "restic")
-    (version "0.9.2")
+    (version "0.9.3")
     ;; TODO Try packaging the bundled / vendored dependencies in the 'vendor/'
     ;; directory.
     (source (origin
@@ -872,7 +873,7 @@ is like a time machine for your data. ")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "15bwkydxcg4xhrnqxvxji8wacrsndb1a6frj98wggfaijqzfx3lg"))))
+                "1l1ddnf61pfsrry97qwhhdzywin2mgnbrkhcc9pabsdfk602anmr"))))
     (build-system go-build-system)
     (arguments
      `(#:import-path "github.com/restic/restic"
@@ -886,6 +887,8 @@ is like a time machine for your data. ")
              (with-directory-excursion (string-append
                                         "src/github.com/restic/restic-"
                                         ,version)
+               ;; Disable 'restic self-update'.  It makes little sense in Guix.
+               (substitute* "build.go" (("selfupdate") ""))
                (invoke "go" "run" "build.go"))))
 
          (replace 'check
diff --git a/gnu/packages/batik.scm b/gnu/packages/batik.scm
new file mode 100644
index 0000000000..8296c0fbd6
--- /dev/null
+++ b/gnu/packages/batik.scm
@@ -0,0 +1,258 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2018 Danny Milosavljevic <dannym@scratchpost.org>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages batik)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix utils)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (guix packages)
+  #:use-module (guix build-system ant)
+  #:use-module (guix build utils)
+  #:use-module (gnu packages)
+  #:use-module (gnu packages compression)
+  #:use-module (gnu packages java)
+  #:use-module (gnu packages textutils)
+  #:use-module (gnu packages xml))
+
+(define-public java-w3c-smil-3.0
+  (package
+    (name "java-w3c-smil")
+    (version "3.0")
+    (source #f)
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "w3c-smil.jar"
+       #:source-dir "."
+       #:tests? #f ; No tests exist.
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'unpack
+           (lambda* (#:key source #:allow-other-keys)
+             ;; https://www.w3.org/TR/SMIL3/smil-timing.html#q142
+             (mkdir-p "org/w3c/dom/smil")
+             (call-with-output-file "org/w3c/dom/smil/ElementTimeControl.java"
+               (lambda (port)
+                 (format port "
+package org.w3c.dom.smil;
+
+import org.w3c.dom.DOMException;
+
+public interface ElementTimeControl {
+    public boolean  beginElement();
+
+    public boolean  beginElementAt(float offset);
+
+    public boolean endElement();
+
+    public boolean endElementAt(float offset);
+}
+")))
+             (call-with-output-file "org/w3c/dom/smil/TimeEvent.java"
+               (lambda (port)
+                 (format port "
+package org.w3c.dom.smil;
+
+import org.w3c.dom.events.Event;
+import org.w3c.dom.views.AbstractView;
+
+public interface TimeEvent extends Event {
+    public AbstractView getView();
+
+    public int getDetail();
+
+    public void initTimeEvent(String typeArg,
+                              AbstractView viewArg,
+                              int detailArg);
+
+}
+")))
+             #t)))))
+    (native-inputs
+     `(("unzip" ,unzip)))
+    (home-page "https://www.w3.org/Style/CSS/SAC/")
+    (synopsis "W3C SAC interface for CSS parsers in Java")
+    (description "This package provides a SAC interface by the W3C.
+SAC is an interface for CSS parsers.")
+    (license license:w3c)))
+
+(define-public java-w3c-svg-1.0
+  (package
+    (name "java-w3c-svg")
+    (version "20010904")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "http://www.w3.org/TR/2001/REC-SVG-" version
+                            "/java-binding.zip"))
+        (sha256
+         (base32
+          "0gnxvx51bg6ijplf6l2q0i1m07101f7fickawshfygnsdjqfdnbp"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "w3c-svg.jar"
+       #:source-dir "."
+       #:tests? #f ; No tests exist.
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'unpack
+           (lambda* (#:key source #:allow-other-keys)
+             (invoke "unzip" source)))
+         (add-after 'unpack 'patch-interface
+           (lambda _
+             ;; Make it compatible with batik.
+             ;; This is equivalent to usingxml commons externals'
+             ;; "externals" part from https://xerces.apache.org/mirrors.cgi
+             (substitute* "SVGFEConvolveMatrixElement.java"
+              (("public SVGAnimatedLength[ ]*getKernelUnitLength")
+               "public SVGAnimatedNumber getKernelUnitLength"))
+             (substitute* "SVGFEMorphologyElement.java"
+              (("public SVGAnimatedLength[ ]*getRadius")
+               "public SVGAnimatedNumber getRadius"))
+             (call-with-output-file "EventListenerInitializer.java"
+               (lambda (port)
+                 (format port "
+// License: http://www.apache.org/licenses/LICENSE-2.0
+package org.w3c.dom.svg;
+public interface EventListenerInitializer {
+    public void initializeEventListeners(SVGDocument doc);
+}
+
+")))
+             #t)))))
+    (propagated-inputs
+     `(("java-w3c-smil" ,java-w3c-smil-3.0)))
+    (native-inputs
+     `(("unzip" ,unzip)))
+    (home-page "https://www.w3.org/Style/CSS/SAC/")
+    (synopsis "W3C SVG 1.0 interface")
+    (description "This package provides a SVG 1.0 interface.")
+    (license license:w3c)))
+
+(define-public java-w3c-svg
+  (package
+    (inherit java-w3c-svg-1.0)
+    (version "20110816")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "http://www.w3.org/TR/2011/REC-SVG11-" version
+                            "/java-binding.zip"))
+        (sha256
+         (base32
+          "0jicqcrxav8ggs37amgvvwgc2f0qp1c5wns4rb2i3si83s2m09ns"))))
+    (arguments
+     (substitute-keyword-arguments (package-arguments java-w3c-svg-1.0)
+       ((#:phases phases)
+       `(modify-phases ,phases
+          (delete 'patch-interface)))))
+    (propagated-inputs
+     `())
+    (synopsis "W3C SVG interface")
+    (description "This package provides a SVG interface.")))
+
+(define-public java-w3c-sac
+  (package
+    (name "java-w3c-sac")
+    (version "1.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "https://www.w3.org/2002/06/sacjava-" version
+                            ".zip"))
+        (sha256
+         (base32
+          "1djp2nnzf8jchnwz1ij9i5jfx4cg1ryf3lbw133yzjy0wkhcla52"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "w3c-sac.jar"
+       #:source-dir "sac-1.3"
+       #:tests? #f ; No tests exist.
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'unpack
+           (lambda* (#:key source #:allow-other-keys)
+             (invoke "unzip" source))))))
+    (native-inputs
+     `(("unzip" ,unzip)))
+    (home-page "https://www.w3.org/Style/CSS/SAC/")
+    (synopsis "W3C SAC interface for CSS parsers in Java")
+    (description "This package provides a SAC interface by the W3C.
+SAC is an interface for CSS parsers.")
+    (license license:w3c)))
+
+(define-public java-xmlgraphics-commons
+  (package
+    (name "java-xmlgraphics-commons")
+    (version "2.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append
+              "mirror://apache/xmlgraphics/commons/source/xmlgraphics-commons-"
+              version "-src.tar.gz"))
+        (sha256
+         (base32
+          "0a432a4ca3vgnbada5cy9mlmfzmq6hi4i176drfxrp17q2d43w23"))
+        (modules '((guix build utils)))
+        (snippet
+         `(begin
+            (delete-file-recursively "lib")
+            #t))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:build-target "jar-main"
+       #:test-target "junit"
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'make-reproducible
+           (lambda _
+             (substitute* "build.xml"
+              (("<attribute name=\"Build-Id\" value=\"[^\"]*\"")
+               "<attribute name=\"Build-Id\" value=\"\""))
+             #t))
+         (add-before 'build 'prepare-build-directories
+           (lambda _
+             (mkdir "lib")
+             (mkdir "lib/build")
+             #t))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (out-share (string-append out "/share/java")))
+               (for-each (lambda (name)
+                           (install-file name out-share))
+                         (find-files "build"
+                                     "xmlgraphics-commons.*\\.jar$"))
+               #t))))))
+    (native-inputs
+     `(("java-apache-xml-commons-resolver" ,java-apache-xml-commons-resolver)
+       ("java-asm" ,java-asm)
+       ("java-cglib" ,java-cglib)
+       ("java-hamcrest" ,java-hamcrest-core)
+       ("java-junit" ,java-junit)
+       ("java-mockito" ,java-mockito-1)
+       ("java-objenesis" ,java-objenesis)))
+    (propagated-inputs
+     `(("java-commons-io" ,java-commons-io)
+       ("java-commons-logging-minimal" ,java-commons-logging-minimal)))
+    (home-page "https://xmlgraphics.apache.org/commons/")
+    (synopsis "XMLGraphics constants")
+    (description "This package provides XMLGraphics constants (originally
+from @code{batik}).")
+    (license license:asl2.0)))
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 108f3c398f..1b779855b2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -886,3 +886,30 @@ Time-Course experiments) analyses 4sU-seq and RNA-seq time-course data in
 order to evaluate synthesis, processing and degradation rates and assess via
 modeling the rates that determines changes in mature mRNA levels.")
     (license license:gpl2)))
+
+(define-public r-dnabarcodes
+  (package
+    (name "r-dnabarcodes")
+    (version "1.10.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "DNABarcodes" version))
+       (sha256
+        (base32
+         "0xhna7f0kr7pp2hqwara5i57m9mdr65shflfxiyw6yy3g90pgb5x"))))
+    (properties `((upstream-name . "DNABarcodes")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-bh" ,r-bh)
+       ("r-matrix" ,r-matrix)
+       ("r-rcpp" ,r-rcpp)))
+    (home-page "https://bioconductor.org/packages/DNABarcodes")
+    (synopsis "Create and analyze DNA barcodes")
+    (description
+     "This package offers tools to create DNA barcode sets capable of
+correcting insertion, deletion, and substitution errors.  Existing barcodes
+can be analyzed regarding their minimal, maximal and average distances between
+barcodes.  Finally, reads that start with a (possibly mutated) barcode can be
+demultiplexed, i.e. assigned to their original reference barcode.")
+    (license license:gpl2)))
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 67f24a6170..1e04081ceb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -38,6 +38,7 @@
   #:use-module (guix build-system ant)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system cmake)
+  #:use-module (guix build-system haskell)
   #:use-module (guix build-system ocaml)
   #:use-module (guix build-system perl)
   #:use-module (guix build-system python)
@@ -72,6 +73,8 @@
   #:use-module (gnu packages groff)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages haskell)
+  #:use-module (gnu packages haskell-check)
+  #:use-module (gnu packages haskell-web)
   #:use-module (gnu packages image)
   #:use-module (gnu packages imagemagick)
   #:use-module (gnu packages java)
@@ -133,24 +136,23 @@
        (modify-phases %standard-phases
          (delete 'configure)
          (replace 'build
-                  (lambda _
-                    (zero? (system* "gcc"
-                                    "-O3"
-                                    "-ffast-math"
-                                    "-finline-functions"
-                                    "-o"
-                                    "aragorn"
-                                    (string-append "aragorn" ,version ".c")))))
+           (lambda _
+             (invoke "gcc"
+                     "-O3"
+                     "-ffast-math"
+                     "-finline-functions"
+                     "-o"
+                     "aragorn"
+                     (string-append "aragorn" ,version ".c"))
+             #t))
          (replace 'install
-                  (lambda* (#:key outputs #:allow-other-keys)
-                    (let* ((out (assoc-ref outputs "out"))
-                           (bin (string-append out "/bin"))
-                           (man (string-append out "/share/man/man1")))
-                      (mkdir-p bin)
-                      (install-file "aragorn" bin)
-                      (mkdir-p man)
-                      (install-file "aragorn.1" man))
-                    #t)))))
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (bin (string-append out "/bin"))
+                    (man (string-append out "/share/man/man1")))
+               (install-file "aragorn" bin)
+               (install-file "aragorn.1" man))
+             #t)))))
     (home-page "http://mbio-serv2.mbioekol.lu.se/ARAGORN")
     (synopsis "Detect tRNA, mtRNA and tmRNA genes in nucleotide sequences")
     (description
@@ -165,15 +167,16 @@ structure of the predicted RNA.")
     (name "bamm")
     (version "1.7.3")
     (source (origin
-              (method url-fetch)
+              (method git-fetch)
               ;; BamM is not available on pypi.
-              (uri (string-append
-                    "https://github.com/Ecogenomics/BamM/archive/"
-                    version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (uri (git-reference
+                    (url "https://github.com/Ecogenomics/BamM.git")
+                    (commit version)
+                    (recursive? #t)))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "1f35yxp4pc8aadsvbpg6r4kg2jh4fkjci0iby4iyljm6980sac0s"))
+                "1p83ahi984ipslxlg4yqy1gdnya9rkn1v71z8djgxkm9d2chw4c5"))
               (modules '((guix build utils)))
               (snippet
                `(begin
@@ -195,11 +198,12 @@ structure of the predicted RNA.")
            (lambda _
              (with-directory-excursion "c"
                (let ((sh (which "sh")))
+                 (for-each make-file-writable (find-files "." ".*"))
                  ;; Use autogen so that 'configure' works.
                  (substitute* "autogen.sh" (("/bin/sh") sh))
                  (setenv "CONFIG_SHELL" sh)
-                 (substitute* "configure" (("/bin/sh") sh))
-                 (zero? (system* "./autogen.sh"))))))
+                 (invoke "./autogen.sh")))
+             #t))
          (delete 'build)
          ;; Run tests after installation so compilation only happens once.
          (delete 'check)
@@ -227,7 +231,8 @@ structure of the predicted RNA.")
              ;; There are 2 errors printed, but they are safe to ignore:
              ;; 1) [E::hts_open_format] fail to open file ...
              ;; 2) samtools view: failed to open ...
-             (zero? (system* "nosetests")))))))
+             (invoke "nosetests")
+             #t)))))
     (native-inputs
      `(("autoconf" ,autoconf)
        ("automake" ,automake)
@@ -288,34 +293,25 @@ BAM files.")
 (define-public bcftools
   (package
     (name "bcftools")
-    (version "1.8")
+    (version "1.9")
     (source (origin
               (method url-fetch)
-              (uri (string-append
-                    "https://github.com/samtools/bcftools/releases/download/"
-                    version "/bcftools-" version ".tar.bz2"))
+              (uri (string-append "https://github.com/samtools/bcftools/"
+                                  "releases/download/"
+                                  version "/bcftools-" version ".tar.bz2"))
               (sha256
                (base32
-                "1vgw2mwngq20c530zim52zvgmw1lci8rzl33pvh44xqk3xlzvjsa"))
+                "1j3h638i8kgihzyrlnpj82xg1b23sijibys9hvwari3fy7kd0dkg"))
               (modules '((guix build utils)))
               (snippet '(begin
                           ;; Delete bundled htslib.
-                          (delete-file-recursively "htslib-1.8")
+                          (delete-file-recursively "htslib-1.9")
                           #t))))
     (build-system gnu-build-system)
     (arguments
-     `(#:test-target "test"
-       #:configure-flags (list "--with-htslib=system")
-       #:make-flags
-       (list
-        "USE_GPL=1"
-        "LIBS=-lgsl -lgslcblas"
-        (string-append "prefix=" (assoc-ref %outputs "out"))
-        (string-append "HTSDIR=" (assoc-ref %build-inputs "htslib") "/include")
-        (string-append "HTSLIB=" (assoc-ref %build-inputs "htslib") "/lib/libhts.so")
-        (string-append "BGZIP=" (assoc-ref %build-inputs "htslib") "/bin/bgzip")
-        (string-append "TABIX=" (assoc-ref %build-inputs "htslib") "/bin/tabix")
-        (string-append "PACKAGE_VERSION=" ,version))
+     `(#:configure-flags
+       (list "--enable-libgsl")
+       #:test-target "test"
        #:phases
        (modify-phases %standard-phases
          (add-before 'check 'patch-tests
@@ -341,15 +337,16 @@ transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.")
 (define-public bedops
   (package
     (name "bedops")
-    (version "2.4.33")
+    (version "2.4.35")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/bedops/bedops/archive/v"
-                                  version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/bedops/bedops.git")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "0kx4awrwby8f33wqyx8w7ms7v25xhf0d421csgf96a3hfzn2mb0m"))))
+                "0mmgsgwz5r9w76hzgxkxc9s9lkdhhaf7vr6i02b09vbswvs1fyqx"))))
     (build-system gnu-build-system)
     (arguments
      '(#:tests? #f
@@ -371,9 +368,9 @@ transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed.")
 
              ;; Unpack the tarballs to benefit from shebang patching.
              (with-directory-excursion "third-party"
-               (and (zero? (system* "tar" "xvf" "jansson-2.6.tar.bz2"))
-                    (zero? (system* "tar" "xvf" "zlib-1.2.7.tar.bz2"))
-                    (zero? (system* "tar" "xvf" "bzip2-1.0.6.tar.bz2"))))
+               (invoke "tar" "xvf" "jansson-2.6.tar.bz2")
+               (invoke "tar" "xvf" "zlib-1.2.7.tar.bz2")
+               (invoke "tar" "xvf" "bzip2-1.0.6.tar.bz2"))
              ;; Disable unpacking of tarballs in Makefile.
              (substitute* "system.mk/Makefile.linux"
                (("^\tbzcat .*") "\t@echo \"not unpacking\"\n")
@@ -459,6 +456,20 @@ BED, GFF/GTF, VCF.")
                          (find-files "bin" ".*")))
              #t)))))))
 
+;; Needed for pybedtools.
+(define-public bedtools-2.26
+  (package (inherit bedtools)
+    (name "bedtools")
+    (version "2.26.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/arq5x/bedtools2/releases/"
+                                  "download/v" version "/"
+                                  "bedtools-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0jhavwifnf7lmkb11h9y7dynr8d699h0rd2l52j1pfgircr2zwv5"))))))
+
 (define-public ribotaper
   (package
     (name "ribotaper")
@@ -588,29 +599,54 @@ input/output delimiter.  When the new functionality is not used, bioawk is
 intended to behave exactly the same as the original BWK awk.")
     (license license:x11)))
 
-(define-public python2-pybedtools
+(define-public python-pybedtools
   (package
-    (name "python2-pybedtools")
-    (version "0.6.9")
+    (name "python-pybedtools")
+    (version "0.7.10")
     (source (origin
               (method url-fetch)
-              (uri (string-append
-                    "https://pypi.python.org/packages/source/p/pybedtools/pybedtools-"
-                    version ".tar.gz"))
+              (uri (pypi-uri "pybedtools" version))
               (sha256
                (base32
-                "1ldzdxw1p4y3g2ignmggsdypvqkcwqwzhdha4rbgpih048z5p4an"))))
+                "0l2b2wrnj85azfqgr0zwr60f7j58vlla1hcgxvr9rwikpl8j72ji"))))
     (build-system python-build-system)
-    (arguments `(#:python ,python-2)) ; no Python 3 support
-    (inputs
-     `(("python-matplotlib" ,python2-matplotlib)))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         ;; See https://github.com/daler/pybedtools/issues/261
+         (add-after 'unpack 'disable-broken-tests
+           (lambda _
+             ;; This test (pybedtools.test.test_scripts.test_venn_mpl) needs a
+             ;; graphical environment.
+             (substitute* "pybedtools/test/test_scripts.py"
+               (("def test_venn_mpl")
+                "def _do_not_test_venn_mpl"))
+             ;; Requires internet access.
+             (substitute* "pybedtools/test/test_helpers.py"
+               (("def test_chromsizes")
+                "def _do_not_test_chromsizes"))
+             ;; FIXME: these two fail for no good reason.
+             (substitute* "pybedtools/test/test1.py"
+               (("def test_issue_157")
+                "def _do_not_test_issue_157")
+               (("def test_to_dataframe")
+                "def _do_not_test_to_dataframe"))
+             #t)))))
     (propagated-inputs
-     `(("bedtools" ,bedtools)
-       ("samtools" ,samtools)))
+     ;; Tests don't pass with Bedtools 2.27.1.
+     ;; See https://github.com/daler/pybedtools/issues/260
+     `(("bedtools" ,bedtools-2.26)
+       ("samtools" ,samtools)
+       ("python-matplotlib" ,python-matplotlib)
+       ("python-pysam" ,python-pysam)
+       ("python-pyyaml" ,python-pyyaml)))
     (native-inputs
-     `(("python-cython" ,python2-cython)
-       ("python-pyyaml" ,python2-pyyaml)
-       ("python-nose" ,python2-nose)))
+     `(("python-numpy" ,python-numpy)
+       ("python-pandas" ,python-pandas)
+       ("python-cython" ,python-cython)
+       ("python-nose" ,python-nose)
+       ("kentutils" ,kentutils) ; for bedGraphToBigWig
+       ("python-six" ,python-six)))
     (home-page "https://pythonhosted.org/pybedtools/")
     (synopsis "Python wrapper for BEDtools programs")
     (description
@@ -620,6 +656,36 @@ pybedtools extends BEDTools by offering feature-level manipulations from with
 Python.")
     (license license:gpl2+)))
 
+(define-public python2-pybedtools
+  (let ((pkg (package-with-python2 python-pybedtools)))
+    (package (inherit pkg)
+      (arguments
+       `(#:modules ((ice-9 ftw)
+                    (srfi srfi-1)
+                    (srfi srfi-26)
+                    (guix build utils)
+                    (guix build python-build-system))
+         ;; See https://github.com/daler/pybedtools/issues/192
+         ,@(substitute-keyword-arguments (package-arguments pkg)
+             ((#:phases phases)
+              `(modify-phases ,phases
+                 (replace 'check
+                   (lambda _
+                     (let ((cwd (getcwd)))
+                       (setenv "PYTHONPATH"
+                               (string-append cwd "/build/"
+                                              (find (cut string-prefix? "lib" <>)
+                                                    (scandir (string-append cwd "/build")))
+                                              ":" (getenv "PYTHONPATH"))))
+                     ;; The tests need to be run from elsewhere...
+                     (mkdir-p "/tmp/test")
+                     (copy-recursively "pybedtools/test" "/tmp/test")
+                     (with-directory-excursion "/tmp/test"
+                       (invoke "nosetests"
+                               ;; This test fails for unknown reasons
+                               "--exclude=.*test_getting_example_beds"))
+                     #t))))))))))
+
 (define-public python-biom-format
   (package
    (name "python-biom-format")
@@ -1005,15 +1071,12 @@ package provides command line tools using the Bio++ library.")
        #:parallel-build? #f ; not supported
        #:phases
        (modify-phases %standard-phases
-         (add-before
-          'configure 'set-HOME
+         (add-before 'configure 'set-HOME
           ;; $HOME needs to be set at some point during the configure phase
           (lambda _ (setenv "HOME" "/tmp") #t))
-         (add-after
-          'unpack 'enter-dir
+         (add-after 'unpack 'enter-dir
           (lambda _ (chdir "c++") #t))
-         (add-after
-          'enter-dir 'fix-build-system
+         (add-after 'enter-dir 'fix-build-system
           (lambda _
             (define (which* cmd)
               (cond ((string=? cmd "date")
@@ -1061,31 +1124,31 @@ package provides command line tools using the Bio++ library.")
               (("action=/bin/") "action=")
               (("export PATH") ":"))
             #t))
-         (replace
-          'configure
-          (lambda* (#:key inputs outputs #:allow-other-keys)
-            (let ((out     (assoc-ref outputs "out"))
-                  (lib     (string-append (assoc-ref outputs "lib") "/lib"))
-                  (include (string-append (assoc-ref outputs "include")
-                                          "/include/ncbi-tools++")))
-              ;; The 'configure' script doesn't recognize things like
-              ;; '--enable-fast-install'.
-              (zero? (system* "./configure.orig"
-                              (string-append "--with-build-root=" (getcwd) "/build")
-                              (string-append "--prefix=" out)
-                              (string-append "--libdir=" lib)
-                              (string-append "--includedir=" include)
-                              (string-append "--with-bz2="
-                                             (assoc-ref inputs "bzip2"))
-                              (string-append "--with-z="
-                                             (assoc-ref inputs "zlib"))
-                              (string-append "--with-pcre="
-                                             (assoc-ref inputs "pcre"))
-                              ;; Each library is built twice by default, once
-                              ;; with "-static" in its name, and again
-                              ;; without.
-                              "--without-static"
-                              "--with-dll"))))))))
+         (replace 'configure
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((out     (assoc-ref outputs "out"))
+                   (lib     (string-append (assoc-ref outputs "lib") "/lib"))
+                   (include (string-append (assoc-ref outputs "include")
+                                           "/include/ncbi-tools++")))
+               ;; The 'configure' script doesn't recognize things like
+               ;; '--enable-fast-install'.
+               (invoke "./configure.orig"
+                       (string-append "--with-build-root=" (getcwd) "/build")
+                       (string-append "--prefix=" out)
+                       (string-append "--libdir=" lib)
+                       (string-append "--includedir=" include)
+                       (string-append "--with-bz2="
+                                      (assoc-ref inputs "bzip2"))
+                       (string-append "--with-z="
+                                      (assoc-ref inputs "zlib"))
+                       (string-append "--with-pcre="
+                                      (assoc-ref inputs "pcre"))
+                       ;; Each library is built twice by default, once
+                       ;; with "-static" in its name, and again
+                       ;; without.
+                       "--without-static"
+                       "--with-dll")
+               #t))))))
     (outputs '("out"       ;  21 MB
                "lib"       ; 226 MB
                "include")) ;  33 MB
@@ -1210,15 +1273,16 @@ errors at the end of reads.")
 (define-public bowtie
   (package
     (name "bowtie")
-    (version "2.3.2")
+    (version "2.3.4.3")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/BenLangmead/bowtie2/archive/v"
-                                  version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/BenLangmead/bowtie2.git")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "0hwa5r9qbglppb7sz5z79rlmmddr3n51n468jb3wh8rwjgn3yr90"))
+                "1zl3cf327y2p7p03cavymbh7b00djc7lncfaqih33n96iy9q8ibp"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -1228,14 +1292,6 @@ errors at the end of reads.")
                     (("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\""))
                   #t))))
     (build-system gnu-build-system)
-    (inputs
-     `(("perl" ,perl)
-       ("perl-clone" ,perl-clone)
-       ("perl-test-deep" ,perl-test-deep)
-       ("perl-test-simple" ,perl-test-simple)
-       ("python" ,python-2)
-       ("tbb" ,tbb)
-       ("zlib" ,zlib)))
     (arguments
      '(#:make-flags
        (list "allall"
@@ -1245,11 +1301,21 @@ errors at the end of reads.")
        (modify-phases %standard-phases
          (delete 'configure)
          (replace 'check
-           (lambda* (#:key outputs #:allow-other-keys)
-             (zero? (system* "perl"
-                             "scripts/test/simple_tests.pl"
-                             "--bowtie2=./bowtie2"
-                             "--bowtie2-build=./bowtie2-build")))))))
+           (lambda _
+             (invoke "perl"
+                     "scripts/test/simple_tests.pl"
+                     "--bowtie2=./bowtie2"
+                     "--bowtie2-build=./bowtie2-build")
+             #t)))))
+    (inputs
+     `(("tbb" ,tbb)
+       ("zlib" ,zlib)
+       ("python" ,python-wrapper)))
+    (native-inputs
+     `(("perl" ,perl)
+       ("perl-clone" ,perl-clone)
+       ("perl-test-deep" ,perl-test-deep)
+       ("perl-test-simple" ,perl-test-simple)))
     (home-page "http://bowtie-bio.sourceforge.net/bowtie2/index.shtml")
     (synopsis "Fast and sensitive nucleotide sequence read aligner")
     (description
@@ -1445,17 +1511,17 @@ multiple sequence alignments.")
 (define-public python-pysam
   (package
     (name "python-pysam")
-    (version "0.13.0")
+    (version "0.15.1")
     (source (origin
-              (method url-fetch)
+              (method git-fetch)
               ;; Test data is missing on PyPi.
-              (uri (string-append
-                    "https://github.com/pysam-developers/pysam/archive/v"
-                    version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (uri (git-reference
+                    (url "https://github.com/pysam-developers/pysam.git")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "0dzap2axin9cbbl0d825w294bpn00zagfm1sigamm4v2pm5bj9lp"))
+                "1vj367w6xbn9bpmksm162l1aipf7cj97h1q83y7jcpm33ihwpf7x"))
               (modules '((guix build utils)))
               (snippet '(begin
                           ;; Drop bundled htslib. TODO: Also remove samtools
@@ -1482,6 +1548,11 @@ multiple sequence alignments.")
              #t))
          (replace 'check
            (lambda* (#:key inputs outputs #:allow-other-keys)
+             ;; This file contains tests that require a connection to the
+             ;; internet.
+             (delete-file "tests/tabix_test.py")
+             ;; FIXME: This test fails
+             (delete-file "tests/AlignmentFile_test.py")
              ;; Add first subdirectory of "build" directory to PYTHONPATH.
              (setenv "PYTHONPATH"
                      (string-append
@@ -1492,28 +1563,26 @@ multiple sequence alignments.")
              ;; Step out of source dir so python does not import from CWD.
              (with-directory-excursion "tests"
                (setenv "HOME" "/tmp")
-               (and (zero? (system* "make" "-C" "pysam_data"))
-                    (zero? (system* "make" "-C" "cbcf_data"))
-                    ;; Running nosetests without explicitly asking for a
-                    ;; single process leads to a crash.  Running with multiple
-                    ;; processes fails because the tests are not designed to
-                    ;; run in parallel.
-
-                    ;; FIXME: tests keep timing out on some systems.
-                    ;; (zero? (system* "nosetests" "-v"
-                    ;;                 "--processes" "1"))
-                    )))))))
-    (propagated-inputs
-     `(("htslib"            ,htslib))) ; Included from installed header files.
+               (invoke "make" "-C" "pysam_data")
+               (invoke "make" "-C" "cbcf_data")
+               ;; Running nosetests without explicitly asking for a single
+               ;; process leads to a crash.  Running with multiple processes
+               ;; fails because the tests are not designed to run in parallel.
+
+               ;; FIXME: tests keep timing out on some systems.
+               (invoke "nosetests" "-v" "--processes" "1")))))))
+    (propagated-inputs
+     `(("htslib" ,htslib))) ; Included from installed header files.
     (inputs
-     `(("ncurses"           ,ncurses)
-       ("zlib"              ,zlib)))
+     `(("ncurses" ,ncurses)
+       ("curl" ,curl)
+       ("zlib" ,zlib)))
     (native-inputs
-     `(("python-cython"     ,python-cython)
+     `(("python-cython" ,python-cython)
        ;; Dependencies below are are for tests only.
-       ("samtools"          ,samtools)
-       ("bcftools"          ,bcftools)
-       ("python-nose"       ,python-nose)))
+       ("samtools" ,samtools)
+       ("bcftools" ,bcftools)
+       ("python-nose" ,python-nose)))
     (home-page "https://github.com/pysam-developers/pysam")
     (synopsis "Python bindings to the SAMtools C API")
     (description
@@ -1641,29 +1710,35 @@ databases.")
 (define-public clipper
   (package
     (name "clipper")
-    (version "1.1")
+    (version "1.2.1")
     (source (origin
-              (method url-fetch)
-              (uri (string-append
-                    "https://github.com/YeoLab/clipper/archive/"
-                    version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/YeoLab/clipper.git")
+                    (commit version)))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "0pflmsvhbf8izbgwhbhj1i7349sw1f55qpqj8ljmapp16hb0p0qi"))
+                "0fja1rj84wp9vpj8rxpj3n8zqzcqq454m904yp9as1w4phccirjb"))
               (modules '((guix build utils)))
               (snippet
                '(begin
                   ;; remove unnecessary setup dependency
                   (substitute* "setup.py"
                     (("setup_requires = .*") ""))
-                  (for-each delete-file
-                            '("clipper/src/peaks.so"
-                              "clipper/src/readsToWiggle.so"))
-                  (delete-file-recursively "dist/")
                   #t))))
     (build-system python-build-system)
-    (arguments `(#:python ,python-2)) ; only Python 2 is supported
+    (arguments
+     `(#:python ,python-2 ; only Python 2 is supported
+       #:phases
+       (modify-phases %standard-phases
+         ;; This is fixed in upstream commit
+         ;; f6c2990198f906bf97730d95695b4bd5a6d01ddb.
+         (add-after 'unpack 'fix-typo
+           (lambda _
+             (substitute* "clipper/src/readsToWiggle.pyx"
+               (("^sc.*") ""))
+             #t)))))
     (inputs
      `(("htseq" ,python2-htseq)
        ("python-pybedtools" ,python2-pybedtools)
@@ -1988,7 +2063,21 @@ trees (phylogenies) and characters.")
     (license license:bsd-3)))
 
 (define-public python2-dendropy
-  (package-with-python2 python-dendropy))
+  (let ((base (package-with-python2 python-dendropy)))
+    (package
+      (inherit base)
+      (arguments
+       `(#:phases
+         (modify-phases %standard-phases
+           (add-after 'unpack 'remove-failing-test
+             (lambda _
+               ;; This test fails when the full test suite is run, as documented
+               ;; at https://github.com/jeetsukumaran/DendroPy/issues/74
+               (substitute* "tests/test_dataio_nexml_reader_tree_list.py"
+                 (("test_collection_comments_and_annotations")
+                  "do_not_test_collection_comments_and_annotations"))
+               #t)))
+         ,@(package-arguments base))))))
 
 (define-public python-py2bit
   (package
@@ -2012,18 +2101,25 @@ with Python.")
 (define-public deeptools
   (package
     (name "deeptools")
-    (version "2.5.1")
+    (version "3.1.2")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/deeptools/deepTools/"
-                                  "archive/" version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/deeptools/deepTools.git")
+                    (commit version)))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "1q8i12l2gvk4n2s8lhyzwhh9g4qbc8lrk5l7maz00yvd5g6z5540"))))
+                "06fdpp6cg3xiwryxjhixvfysl4z0ps1crjgia587qa9ikqpsa7fd"))))
     (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         ;; This phase fails, but it's not needed.
+         (delete 'reset-gzip-timestamps))))
     (inputs
-     `(("python-scipy" ,python-scipy)
+     `(("python-plotly" ,python-plotly)
+       ("python-scipy" ,python-scipy)
        ("python-numpy" ,python-numpy)
        ("python-numpydoc" ,python-numpydoc)
        ("python-matplotlib" ,python-matplotlib)
@@ -2936,18 +3032,15 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).")
 (define-public hmmer
   (package
     (name "hmmer")
-    (version "3.1b2")
+    (version "3.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (string-append
-             "http://eddylab.org/software/hmmer"
-             (version-major version) "/"
-             version "/hmmer-" version ".tar.gz"))
+             "http://eddylab.org/software/hmmer/hmmer-" version ".tar.gz"))
        (sha256
         (base32
-         "0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx"))
-       (patches (search-patches "hmmer-remove-cpu-specificity.patch"))))
+         "171bivy6xhgjsz5nv53n81pc3frnwz29ylblawk2bv46szwjjqd5"))))
     (build-system gnu-build-system)
     (native-inputs `(("perl" ,perl)))
     (home-page "http://hmmer.org/")
@@ -2957,12 +3050,10 @@ indexing scheme is called a @dfn{Hierarchical Graph FM index} (HGFM).")
 sequences, and for making protein sequence alignments.  It implements methods
 using probabilistic models called profile hidden Markov models (profile
 HMMs).")
-    (license (list license:gpl3+
-                   ;; The bundled library 'easel' is distributed
-                   ;; under The Janelia Farm Software License.
-                   (license:non-copyleft
-                    "file://easel/LICENSE"
-                    "See easel/LICENSE in the distribution.")))))
+    ;; hmmer uses non-portable SSE intrinsics so building fails on other
+    ;; platforms.
+    (supported-systems '("x86_64-linux" "i686-linux"))
+    (license license:bsd-3)))
 
 (define-public htseq
   (package
@@ -3517,7 +3608,7 @@ performance.")
 (define-public htslib
   (package
     (name "htslib")
-    (version "1.8")
+    (version "1.9")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -3525,7 +3616,7 @@ performance.")
                     version "/htslib-" version ".tar.bz2"))
               (sha256
                (base32
-                "18bw0mn9pj5wgarnlaxmf1bb8pdqgl1zd6czirqcr62ajpn1xvy0"))))
+                "16ljv43sc3fxmv63w7b2ff8m1s7h89xhazwmbm1bicz8axq8fjz0"))))
     (build-system gnu-build-system)
     (inputs
      `(("openssl" ,openssl)
@@ -4800,66 +4891,79 @@ phylogenies.")
 (define-public rsem
   (package
     (name "rsem")
-    (version "1.2.20")
+    (version "1.3.1")
     (source
      (origin
-       (method url-fetch)
-       (uri
-        (string-append "http://deweylab.biostat.wisc.edu/rsem/src/rsem-"
-                       version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/deweylab/RSEM.git")
+             (commit (string-append "v" version))))
        (sha256
-        (base32 "0nzdc0j0hjllhsd5f2xli95dafm3nawskigs140xzvjk67xh0r9q"))
-       (patches (search-patches "rsem-makefile.patch"))
+        (base32 "1jlq11d1p8qp64w75yj8cnbbd1a93viq10pzsbwal7vdn8fg13j1"))
+       (file-name (git-file-name name version))
        (modules '((guix build utils)))
        (snippet
         '(begin
-           ;; remove bundled copy of boost
+           ;; remove bundled copy of boost and samtools
            (delete-file-recursively "boost")
+           (delete-file-recursively "samtools-1.3")
            #t))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ;no "check" target
+       #:make-flags
+       (list (string-append "BOOST="
+                            (assoc-ref %build-inputs "boost")
+                            "/include/")
+             (string-append "SAMHEADERS="
+                            (assoc-ref %build-inputs "htslib")
+                            "/include/htslib/sam.h")
+             (string-append "SAMLIBS="
+                            (assoc-ref %build-inputs "htslib")
+                            "/lib/libhts.a"))
        #:phases
        (modify-phases %standard-phases
          ;; No "configure" script.
          ;; Do not build bundled samtools library.
          (replace 'configure
-                  (lambda _
-                    (substitute* "Makefile"
-                      (("^all : sam/libbam.a") "all : "))
-                    #t))
+           (lambda _
+             (substitute* "Makefile"
+               (("^all : \\$\\(PROGRAMS\\).*") "all: $(PROGRAMS)\n")
+               (("^\\$\\(SAMLIBS\\).*") ""))
+             #t))
          (replace 'install
-                  (lambda* (#:key outputs #:allow-other-keys)
-                    (let* ((out (string-append (assoc-ref outputs "out")))
-                           (bin (string-append out "/bin/"))
-                           (perl (string-append out "/lib/perl5/site_perl")))
-                      (mkdir-p bin)
-                      (mkdir-p perl)
-                      (for-each (lambda (file)
-                                  (install-file file bin))
-                                (find-files "." "rsem-.*"))
-                      (install-file "rsem_perl_utils.pm" perl))
-                    #t))
-         (add-after
-          'install 'wrap-program
-          (lambda* (#:key outputs #:allow-other-keys)
-            (let ((out (assoc-ref outputs "out")))
-              (for-each (lambda (prog)
-                          (wrap-program (string-append out "/bin/" prog)
-                            `("PERL5LIB" ":" prefix
-                              (,(string-append out "/lib/perl5/site_perl")))))
-                        '("rsem-plot-transcript-wiggles"
-                          "rsem-calculate-expression"
-                          "rsem-generate-ngvector"
-                          "rsem-run-ebseq"
-                          "rsem-prepare-reference")))
-            #t)))))
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (string-append (assoc-ref outputs "out")))
+                    (bin (string-append out "/bin/"))
+                    (perl (string-append out "/lib/perl5/site_perl")))
+               (mkdir-p bin)
+               (mkdir-p perl)
+               (for-each (lambda (file)
+                           (install-file file bin))
+                         (find-files "." "rsem-.*"))
+               (install-file "rsem_perl_utils.pm" perl))
+             #t))
+         (add-after 'install 'wrap-program
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out")))
+               (for-each (lambda (prog)
+                           (wrap-program (string-append out "/bin/" prog)
+                             `("PERL5LIB" ":" prefix
+                               (,(string-append out "/lib/perl5/site_perl")))))
+                         '("rsem-calculate-expression"
+                           "rsem-control-fdr"
+                           "rsem-generate-data-matrix"
+                           "rsem-generate-ngvector"
+                           "rsem-plot-transcript-wiggles"
+                           "rsem-prepare-reference"
+                           "rsem-run-ebseq"
+                           "rsem-run-prsem-testing-procedure")))
+             #t)))))
     (inputs
      `(("boost" ,boost)
-       ("ncurses" ,ncurses)
        ("r-minimal" ,r-minimal)
        ("perl" ,perl)
-       ("samtools" ,samtools-0.1)
+       ("htslib" ,htslib-1.3)
        ("zlib" ,zlib)))
     (home-page "http://deweylab.biostat.wisc.edu/rsem/")
     (synopsis "Estimate gene expression levels from RNA-Seq data")
@@ -4989,7 +5093,7 @@ to the user's query of interest.")
 (define-public samtools
   (package
     (name "samtools")
-    (version "1.8")
+    (version "1.9")
     (source
      (origin
        (method url-fetch)
@@ -4998,15 +5102,19 @@ to the user's query of interest.")
                        version "/samtools-" version ".tar.bz2"))
        (sha256
         (base32
-         "05myg7bs90i68qbqab9cdg9rqj2xh39azibrx82ipzc5kcfvqhn9"))))
+         "10ilqbmm7ri8z431sn90lvbjwizd0hhkf9rcqw8j823hf26nhgq8"))
+       (modules '((guix build utils)))
+       (snippet '(begin
+                   ;; Delete bundled htslib.
+                   (delete-file-recursively "htslib-1.9")
+                   #t))))
     (build-system gnu-build-system)
     (arguments
      `(#:modules ((ice-9 ftw)
                   (ice-9 regex)
                   (guix build gnu-build-system)
                   (guix build utils))
-       #:make-flags (list (string-append "prefix=" (assoc-ref %outputs "out")))
-       #:configure-flags (list "--with-ncurses" "--with-htslib=system")
+       #:configure-flags (list "--with-ncurses")
        #:phases
        (modify-phases %standard-phases
          (add-after 'unpack 'patch-tests
@@ -5060,9 +5168,9 @@ viewer.")
         (base32 "1m33xsfwz0s8qi45lylagfllqg7fphf4dr0780rsvw75av9wk06h"))))
     (arguments
      `(#:tests? #f ;no "check" target
+       #:make-flags
+       (list "LIBCURSES=-lncurses")
        ,@(substitute-keyword-arguments (package-arguments samtools)
-           ((#:make-flags flags)
-            `(cons "LIBCURSES=-lncurses" ,flags))
            ((#:phases phases)
             `(modify-phases ,phases
                (replace 'install
@@ -6850,14 +6958,14 @@ generate FASTA, JSON, YAML, RDF, JSON-LD, HTML, CSV, tabular output etc.")
 (define-public bioruby
   (package
     (name "bioruby")
-    (version "1.5.1")
+    (version "1.5.2")
     (source
      (origin
        (method url-fetch)
        (uri (rubygems-uri "bio" version))
        (sha256
         (base32
-         "0hdl0789c9n4mprnx5pgd46bfwl8d000rqpamj5h6kkjgspijv49"))))
+         "1d56amdsjv1mag7m6gv2w0xij8hqx1v5xbdjsix8sp3yp36m7938"))))
     (build-system ruby-build-system)
     (propagated-inputs
      `(("ruby-libxml" ,ruby-libxml)))
@@ -11719,19 +11827,39 @@ using nucleotide or amino-acid sequence data.")
 (define-public kallisto
   (package
     (name "kallisto")
-    (version "0.43.1")
+    (version "0.44.0")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/pachterlab/"
-                                  "kallisto/archive/v" version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/pachterlab/kallisto.git")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "03j3iqhvq7ya3c91gidly3k3jvgm97vjq4scihrlxh315j696r11"))))
+                "0nj382jiywqnpgvyhichajpkkh5r0bapn43f4dx40zdaq5v4m40m"))))
     (build-system cmake-build-system)
-    (arguments `(#:tests? #f))          ; no "check" target
+    (arguments
+     `(#:tests? #f          ; no "check" target
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'do-not-use-bundled-htslib
+           (lambda _
+             (substitute* "CMakeLists.txt"
+               (("^ExternalProject_Add" m)
+                (string-append "if (NEVER)\n" m))
+               (("^\\)")
+                (string-append ")\nendif(NEVER)"))
+               (("include_directories\\(\\$\\{htslib_PREFIX.*" m)
+                (string-append "# " m)))
+             (substitute* "src/CMakeLists.txt"
+               (("target_link_libraries\\(kallisto kallisto_core pthread \
+\\$\\{CMAKE_CURRENT_SOURCE_DIR\\}/../ext/htslib/libhts.a\\)")
+                "target_link_libraries(kallisto kallisto_core pthread hts)")
+               (("include_directories\\(\\.\\./ext/htslib\\)") ""))
+             #t)))))
     (inputs
      `(("hdf5" ,hdf5)
+       ("htslib" ,htslib)
        ("zlib" ,zlib)))
     (home-page "http://pachterlab.github.io/kallisto/")
     (synopsis "Near-optimal RNA-Seq quantification")
@@ -13723,3 +13851,381 @@ juicer) and single-resolution or multi-resolution @code{.cool} files (for
 cooler).  Both @code{hic} and @code{cool} files describe Hi-C contact
 matrices.")
     (license license:expat)))
+
+(define-public r-pore
+  (package
+    (name "r-pore")
+    (version "0.24")
+    (source
+     (origin
+       (method url-fetch)
+       (uri
+        (string-append "mirror://sourceforge/rpore/" version
+                       "/poRe_" version ".tar.gz"))
+       (sha256
+        (base32 "0pih9nljbv8g4x8rkk29i7aqq681b782r5s5ynp4nw9yzqnmmksv"))))
+    (properties `((upstream-name . "poRe")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-bit64" ,r-bit64)
+       ("r-data-table" ,r-data-table)
+       ("r-rhdf5" ,r-rhdf5)
+       ("r-shiny" ,r-shiny)
+       ("r-svdialogs" ,r-svdialogs)))
+    (home-page "https://sourceforge.net/projects/rpore/")
+    (synopsis "Visualize Nanopore sequencing data")
+    (description
+     "This package provides graphical user interfaces to organize and visualize Nanopore
+sequencing data.")
+    ;; This is free software but the license variant is unclear:
+    ;; <https://github.com/mw55309/poRe_docs/issues/10>.
+    (license license:bsd-3)))
+
+(define-public r-xbioc
+  (let ((revision "1")
+        (commit "f798c187e376fd1ba27abd559f47bbae7e3e466b"))
+    (package
+      (name "r-xbioc")
+      (version (git-version "0.1.15" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/renozao/xbioc.git")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "03hffh2f6z71y6l6dqpa5cql3hdaw7zigdi8sm2dzgx379k9rgrr"))))
+      (build-system r-build-system)
+      (propagated-inputs
+       `(("r-annotationdbi" ,r-annotationdbi)
+         ("r-assertthat" ,r-assertthat)
+         ("r-biobase" ,r-biobase)
+         ("r-biocinstaller" ,r-biocinstaller)
+         ("r-digest" ,r-digest)
+         ("r-pkgmaker" ,r-pkgmaker)
+         ("r-plyr" ,r-plyr)
+         ("r-reshape2" ,r-reshape2)
+         ("r-stringr" ,r-stringr)))
+      (home-page "https://github.com/renozao/xbioc/")
+      (synopsis "Extra base functions for Bioconductor")
+      (description "This package provides extra utility functions to perform
+common tasks in the analysis of omics data, leveraging and enhancing features
+provided by Bioconductor packages.")
+      (license license:gpl3+))))
+
+(define-public r-cssam
+  (let ((revision "1")
+        (commit "9ec58c982fa551af0d80b1a266890d92954833f2"))
+    (package
+      (name "r-cssam")
+      (version (git-version "1.4" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/shenorrLab/csSAM.git")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "128syf9v39gk0z3ip000qpsjbg6l1siyq6c8b0hz41dzg5achyb3"))))
+      (build-system r-build-system)
+      (propagated-inputs
+       `(("r-formula" ,r-formula)
+         ("r-ggplot2" ,r-ggplot2)
+         ("r-pkgmaker" ,r-pkgmaker)
+         ("r-plyr" ,r-plyr)
+         ("r-rngtools" ,r-rngtools)
+         ("r-scales" ,r-scales)))
+      (home-page "https://github.com/shenorrLab/csSAM/")
+      (synopsis "Cell type-specific statistical analysis of microarray")
+      (description "This package implements the method csSAM that computes
+cell-specific differential expression from measured cell proportions using
+SAM.")
+      ;; Any version
+      (license license:lgpl2.1+))))
+
+(define-public r-bseqsc
+  (let ((revision "1")
+        (commit "fef3f3e38dcf3df37103348b5780937982b43b98"))
+    (package
+      (name "r-bseqsc")
+      (version (git-version "1.0" revision commit))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/shenorrLab/bseqsc.git")
+                      (commit commit)))
+                (file-name (git-file-name name version))
+                (sha256
+                 (base32
+                  "1prw13wa20f7wlc3gkkls66n1kxz8d28qrb8icfqdwdnnv8w5qg8"))))
+      (build-system r-build-system)
+      (propagated-inputs
+       `(("r-abind" ,r-abind)
+         ("r-annotationdbi" ,r-annotationdbi)
+         ("r-biobase" ,r-biobase)
+         ("r-cssam" ,r-cssam)
+         ("r-dplyr" ,r-dplyr)
+         ("r-e1071" ,r-e1071)
+         ("r-edger" ,r-edger)
+         ("r-ggplot2" ,r-ggplot2)
+         ("r-nmf" ,r-nmf)
+         ("r-openxlsx" ,r-openxlsx)
+         ("r-pkgmaker" ,r-pkgmaker)
+         ("r-plyr" ,r-plyr)
+         ("r-preprocesscore" ,r-preprocesscore)
+         ("r-rngtools" ,r-rngtools)
+         ("r-scales" ,r-scales)
+         ("r-stringr" ,r-stringr)
+         ("r-xbioc" ,r-xbioc)))
+      (home-page "https://github.com/shenorrLab/bseqsc")
+      (synopsis "Deconvolution of bulk sequencing experiments using single cell data")
+      (description "BSeq-sc is a bioinformatics analysis pipeline that
+leverages single-cell sequencing data to estimate cell type proportion and
+cell type-specific gene expression differences from RNA-seq data from bulk
+tissue samples.  This is a companion package to the publication \"A
+single-cell transcriptomic map of the human and mouse pancreas reveals inter-
+and intra-cell population structure.\" Baron et al. Cell Systems (2016)
+@url{https://www.ncbi.nlm.nih.gov/pubmed/27667365}.")
+      (license license:gpl2+))))
+
+(define-public porechop
+  ;; The recommended way to install is to clone the git repository
+  ;; https://github.com/rrwick/Porechop#installation
+  (let ((commit "289d5dca4a5fc327f97b3f8cecb68ecaf1014861")
+        (revision "1"))
+    (package
+      (name "porechop")
+      (version (git-version "0.2.3" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/rrwick/Porechop.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "05ps43gig0d3ia9x5lj84lb00hbsl6ba9n7y7jz927npxbr2ym23"))))
+      (build-system python-build-system)
+      (home-page "https://github.com/rrwick/porechop")
+      (synopsis "Finding, trimming or splitting adapters, in Oxford Nanopore reads")
+      (description
+       "The porechop package is a tool for finding and removing adapters from Oxford
+Nanopore reads.  Adapters on the ends of reads are trimmed off, and when a read
+has an adapter in its middle, it is treated as chimeric and chopped into
+separate reads.  Porechop performs thorough alignments to effectively find
+adapters, even at low sequence identity.  Porechop also supports demultiplexing
+of Nanopore reads that were barcoded with the Native Barcoding Kit, PCR
+Barcoding Kit or Rapid Barcoding Kit.")
+      (license license:gpl3+))))
+
+(define-public poretools
+  ;; The latest release was in 2016 and the latest commit is from 2017
+  ;; the recommended way to install is to clone the git repository
+  ;; https://poretools.readthedocs.io/en/latest/content/installation.html
+  (let ((commit "e426b1f09e86ac259a00c261c79df91510777407")
+        (revision "1"))
+    (package
+      (name "poretools")
+      (version (git-version "0.6.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/arq5x/poretools.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "0bglj833wxpp3cq430p1d3xp085ls221js2y90w7ir2x5ay8l7am"))))
+      (build-system python-build-system)
+      ;; requires python >=2.7, <3.0, and the same for python dependencies
+      (arguments `(#:python ,python-2))
+      (inputs
+       `(("hdf5" ,hdf5)))
+      (propagated-inputs
+       `(("python-dateutil" ,python2-dateutil)
+         ("python-h5py" ,python2-h5py)
+         ("python-matplotlib" ,python2-matplotlib)
+         ("python-pandas" ,python2-pandas)
+         ("python-seaborn" ,python2-seaborn)))
+      (home-page "https://poretools.readthedocs.io")
+      (synopsis "Toolkit for working with nanopore sequencing data")
+      (description
+       "The MinION from Oxford Nanopore Technologies is a nanopore sequencer.
+This @code{poretools} package is a flexible toolkit for exploring datasets
+generated by nanopore sequencing devices for the purposes of quality control and
+downstream analysis.  Poretools operates directly on the native FAST5, a variant
+of the Hierarchical Data Format (HDF5) standard.")
+      (license license:expat))))
+
+(define-public r-absfiltergsea
+  (package
+    (name "r-absfiltergsea")
+    (version "1.5.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "AbsFilterGSEA" version))
+       (sha256
+        (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
+    (properties `((upstream-name . "AbsFilterGSEA")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biobase" ,r-biobase)
+       ("r-deseq" ,r-deseq)
+       ("r-limma" ,r-limma)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcpparmadillo" ,r-rcpparmadillo)))
+    (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
+    (synopsis "Improved false positive control of gene-permuting with absolute filtering")
+    (description
+     "This package provides a function that performs gene-permuting of a gene-set
+enrichment analysis (GSEA) calculation with or without the absolute filtering.
+  Without filtering, users can perform (original) two-tailed or one-tailed
+absolute GSEA.")
+    (license license:gpl2)))
+
+(define-public ngless
+  (package
+    (name "ngless")
+    (version "0.9.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://gitlab.com/ngless/ngless.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0mc2gi7h4lx74zylvyp76mvc0w6706j858ii9vlgzqsw6acpr117"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:haddock? #f ; The haddock phase fails with: NGLess/CmdArgs.hs:20:1:
+                     ; error: parse error on input import
+                     ; import Options.Applicative
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'create-cabal-file
+           (lambda _ (invoke "hpack") #t)))))
+    (inputs
+     `(("ghc-aeson" ,ghc-aeson)
+       ("ghc-ansi-terminal" ,ghc-ansi-terminal)
+       ("ghc-async" ,ghc-async)
+       ("ghc-atomic-write" ,ghc-atomic-write)
+       ("ghc-bytestring-lexing" ,ghc-bytestring-lexing)
+       ("ghc-chart" ,ghc-chart)
+       ("ghc-chart-cairo" ,ghc-chart-cairo)
+       ("ghc-conduit" ,ghc-conduit)
+       ("ghc-conduit-algorithms" ,ghc-conduit-algorithms)
+       ("ghc-conduit-combinators" ,ghc-conduit-combinators)
+       ("ghc-conduit-extra" ,ghc-conduit-extra)
+       ("ghc-configurator" ,ghc-configurator)
+       ("ghc-convertible" ,ghc-convertible)
+       ("ghc-data-default" ,ghc-data-default)
+       ("ghc-double-conversion" ,ghc-double-conversion)
+       ("ghc-edit-distance" ,ghc-edit-distance)
+       ("ghc-either" ,ghc-either)
+       ("ghc-errors" ,ghc-errors)
+       ("ghc-extra" ,ghc-extra)
+       ("ghc-filemanip" ,ghc-filemanip)
+       ("ghc-file-embed" ,ghc-file-embed)
+       ("ghc-gitrev" ,ghc-gitrev)
+       ("ghc-hashtables" ,ghc-hashtables)
+       ("ghc-http-conduit" ,ghc-http-conduit)
+       ("ghc-inline-c" ,ghc-inline-c)
+       ("ghc-inline-c-cpp" ,ghc-inline-c-cpp)
+       ("ghc-intervalmap" ,ghc-intervalmap)
+       ("ghc-missingh" ,ghc-missingh)
+       ("ghc-optparse-applicative" ,ghc-optparse-applicative)
+       ("ghc-parsec" ,ghc-parsec)
+       ("ghc-regex" ,ghc-regex)
+       ("ghc-safe" ,ghc-safe)
+       ("ghc-safeio" ,ghc-safeio)
+       ("ghc-strict" ,ghc-strict)
+       ("ghc-tar" ,ghc-tar)
+       ("ghc-text" ,ghc-text)
+       ("ghc-unliftio" ,ghc-unliftio)
+       ("ghc-unliftio-core" ,ghc-unliftio-core)
+       ("ghc-vector" ,ghc-vector)
+       ("ghc-yaml" ,ghc-yaml)
+       ("ghc-zlib" ,ghc-zlib)))
+    (propagated-inputs
+     `(("r-r6" ,r-r6)
+       ("r-hdf5r" ,r-hdf5r)
+       ("r-iterators" ,r-iterators)
+       ("r-itertools" ,r-itertools)
+       ("r-matrix" ,r-matrix)))
+    (native-inputs
+     `(("ghc-hpack" ,ghc-hpack)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit",ghc-test-framework-hunit)
+       ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
+       ("ghc-test-framework-th" ,ghc-test-framework-th)))
+    (home-page "https://gitlab.com/ngless/ngless")
+    (synopsis "DSL for processing next-generation sequencing data")
+    (description "Ngless is a domain-specific language for
+@dfn{next-generation sequencing} (NGS) data processing.")
+    (license license:expat)))
+
+(define-public filtlong
+  ;; The recommended way to install is to clone the git repository
+  ;; https://github.com/rrwick/Filtlong#installation
+  ;; and the lastest release is more than nine months old
+  (let ((commit "d1bb46dfe8bc7efe6257b5ce222c04bfe8aedaab")
+        (revision "1"))
+    (package
+      (name "filtlong")
+      (version (git-version "0.2.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/rrwick/Filtlong.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1xr92r820x8qlkcr3b57iw223yq8vjgyi42jr79w2xgw47qzr575"))))
+      (build-system gnu-build-system)
+      (arguments
+       `(#:tests? #f                    ; no check target
+         #:phases
+         (modify-phases %standard-phases
+           (delete 'configure)
+           (replace 'install
+             (lambda* (#:key outputs #:allow-other-keys)
+               (let* ((out (assoc-ref outputs "out"))
+                      (bin (string-append out "/bin"))
+                      (scripts (string-append out "/share/filtlong/scripts")))
+                 (install-file "bin/filtlong" bin)
+                 (install-file "scripts/histogram.py" scripts)
+                 (install-file "scripts/read_info_histograms.sh" scripts))
+               #t))
+           (add-after 'install 'wrap-program
+             (lambda* (#:key inputs outputs #:allow-other-keys)
+               (let* ((out (assoc-ref outputs "out"))
+                      (path (getenv "PYTHONPATH")))
+                 (wrap-program (string-append out
+                                              "/share/filtlong/scripts/histogram.py")
+                   `("PYTHONPATH" ":" prefix (,path))))
+               #t))
+           (add-before 'check 'patch-tests
+             (lambda _
+               (substitute* "scripts/read_info_histograms.sh"
+                 (("awk") (which "gawk")))
+               #t)))))
+      (inputs
+       `(("gawk" ,gawk)                 ;for read_info_histograms.sh
+         ("python" ,python-2)           ;required for histogram.py
+         ("zlib" ,zlib)))
+      (home-page "https://github.com/rrwick/Filtlong/")
+      (synopsis "Tool for quality filtering of Nanopore and PacBio data")
+      (description
+       "The Filtlong package is a tool for filtering long reads by quality.
+It can take a set of long reads and produce a smaller, better subset.  It uses
+both read length (longer is better) and read identity (higher is better) when
+choosing which reads pass the filter.")
+      (license (list license:gpl3       ;filtlong
+                     license:asl2.0))))) ;histogram.py
diff --git a/gnu/packages/bittorrent.scm b/gnu/packages/bittorrent.scm
index 3937fac745..59fbd6906b 100644
--- a/gnu/packages/bittorrent.scm
+++ b/gnu/packages/bittorrent.scm
@@ -409,7 +409,7 @@ desktops.")
 (define-public qbittorrent
   (package
     (name "qbittorrent")
-    (version "4.0.4")
+    (version "4.1.3")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -418,7 +418,7 @@ desktops.")
               (file-name (string-append name "-release-" version ".tar.gz"))
               (sha256
                (base32
-                "145r4lv7rqdhrm5znn3ndxsfdf579n46zvj7c53c422am8ir5xhp"))))
+                "00zrpnwanq9f7maky2z4wnzw08xy902s77scm2gcvxxxankr4j92"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags
@@ -434,7 +434,7 @@ desktops.")
      `(("boost" ,boost)
        ("libtorrent-rasterbar" ,libtorrent-rasterbar)
        ("openssl" ,openssl)
-       ("python" ,python)
+       ("python" ,python-wrapper)
        ("qtbase" ,qtbase)
        ("qtsvg" ,qtsvg)
        ("zlib" ,zlib)))
diff --git a/gnu/packages/boost.scm b/gnu/packages/boost.scm
index d1b359b2cb..897987f71c 100644
--- a/gnu/packages/boost.scm
+++ b/gnu/packages/boost.scm
@@ -9,6 +9,7 @@
 ;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com>
+;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -27,6 +28,7 @@
 
 (define-module (gnu packages boost)
   #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix utils)
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix git-download)
@@ -134,6 +136,15 @@ across a broad spectrum of applications.")
               (sha256
                (base32
                 "1jj1aai5rdmd72g90a3pd8sw9vi32zad46xv5av8fhnr48ir6ykj"))))
+    (arguments (substitute-keyword-arguments (package-arguments boost)
+      ((#:phases phases)
+       `(modify-phases ,phases
+          ;; This was removed after boost-1.67.
+          (add-before 'configure 'more-bin-sh-patching
+            (lambda _
+              (substitute* "tools/build/doc/bjam.qbk"
+                (("/bin/sh") (which "sh")))))
+          (delete 'provide-libboost_python)))))
     (properties '((hidden? . #t)))))
 
 (define-public boost-sync
diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm
index 48cba1daee..8038c18326 100644
--- a/gnu/packages/bootloaders.scm
+++ b/gnu/packages/bootloaders.scm
@@ -361,7 +361,7 @@ tree binary files.  These are board description files used by Linux and BSD.")
 (define u-boot
   (package
     (name "u-boot")
-    (version "2018.07")
+    (version "2018.09")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -369,7 +369,7 @@ tree binary files.  These are board description files used by Linux and BSD.")
                     "u-boot-" version ".tar.bz2"))
               (sha256
                (base32
-                "1m7nw64mxflpc6sqvnz2kb5fxfkb4mrpy8b1wi15dcwipj4dy44z"))))
+                "0s122kyz1svvs2yjzj4j9qravl3ra4vn0fjqgski7rlczqyg56w3"))))
     (native-inputs
      `(("bc" ,bc)
        ("bison" ,bison)
@@ -404,6 +404,12 @@ also initializes the boards (RAM etc).")
               (("/bin/false") (which "false")))
              (substitute* "tools/dtoc/fdt_util.py"
               (("'cc'") "'gcc'"))
+             (substitute* "tools/patman/test_util.py"
+              ;; python-coverage is simply called coverage in guix.
+              (("python-coverage") "coverage")
+              ;; XXX Allow for only 99% test coverage.
+              ;; TODO: Find out why that is needed.
+              (("if coverage != '100%':") "if not int(coverage.rstrip('%')) >= 99:"))
              (substitute* "test/run"
               ;; Make it easier to find test failures.
               (("#!/bin/bash") "#!/bin/bash -x")
@@ -418,8 +424,6 @@ also initializes the boards (RAM etc).")
               (("def test_ctrl_c")
                "@pytest.mark.skip(reason='Guix has problems with SIGINT')
 def test_ctrl_c"))
-             (substitute* "tools/binman/binman.py"
-              (("100%") "99%")) ; TODO: Find out why that is needed.
              #t))
          (replace 'configure
            (lambda* (#:key make-flags #:allow-other-keys)
diff --git a/gnu/packages/calendar.scm b/gnu/packages/calendar.scm
index 3b901dcb4e..24e19b472c 100644
--- a/gnu/packages/calendar.scm
+++ b/gnu/packages/calendar.scm
@@ -96,13 +96,13 @@ data units.")
 (define-public khal
   (package
     (name "khal")
-    (version "0.9.9")
+    (version "0.9.10")
     (source (origin
              (method url-fetch)
              (uri (pypi-uri "khal" version))
              (sha256
               (base32
-               "0dq9aqb9pqjfqrnfg43mhpb7m0szmychxy1ydb3lwzf3500c9rsh"))))
+               "03h0j0d3xyqh98x5v2gv63wv3g91hip3vsaxvybsn5iz331d23h4"))))
     (build-system python-build-system)
     (arguments
      `(#:phases (modify-phases %standard-phases
diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm
index 1373f17865..1ae6355a93 100644
--- a/gnu/packages/check.scm
+++ b/gnu/packages/check.scm
@@ -879,7 +879,8 @@ subprocess and see the output as well as any file modifications.")
        (uri (pypi-uri "testtools" version))
        (sha256
         (base32
-         "0n8519lk8aaa91vymz842831181wf7fss98hyllhygi3z1nfq9sq"))))
+         "0n8519lk8aaa91vymz842831181wf7fss98hyllhygi3z1nfq9sq"))
+       (patches (search-patches "python-testtools.patch"))))
     (build-system python-build-system)
     (arguments '(#:tests? #f))
     (propagated-inputs
@@ -1920,14 +1921,14 @@ create data based on random numbers and yet remain repeatable.")
 (define-public python-nose-timer
   (package
     (name "python-nose-timer")
-    (version "0.7.2")
+    (version "0.7.3")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "nose-timer" version))
         (sha256
           (base32
-            "0ywg223p528014z5s0vzck74r4xyw3kvcp2casfnc85dkvir1zj7"))))
+            "0hfz5aqnhf493i9kyb6prm4zm8vx7wmfsyg3nvsnh24lzh2kwx44"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-nose" ,python-nose)
diff --git a/gnu/packages/chez.scm b/gnu/packages/chez.scm
index c8e76b8ab4..929e50ee9b 100644
--- a/gnu/packages/chez.scm
+++ b/gnu/packages/chez.scm
@@ -85,6 +85,7 @@
        ("xorg-rgb" ,xorg-rgb)
        ("nanopass" ,nanopass)
        ("zlib" ,zlib)
+       ("zlib:static" ,zlib "static")
        ("stex" ,stex)))
     (native-inputs
      `(("texlive" ,texlive)
@@ -128,6 +129,7 @@
                    (nanopass (assoc-ref inputs "nanopass"))
                    (stex (assoc-ref inputs "stex"))
                    (zlib (assoc-ref inputs "zlib"))
+                   (zlib-static (assoc-ref inputs "zlib:static"))
                    (unpack (assoc-ref %standard-phases 'unpack))
                    (patch-source-shebangs
                     (assoc-ref %standard-phases 'patch-source-shebangs)))
@@ -148,7 +150,7 @@
                  (("\\$\\{Kernel\\}: \\$\\{kernelobj\\} \\.\\./zlib/libz\\.a")
                   "${Kernel}: ${kernelobj}")
                  (("ld ([-a-zA-Z0-9_${} ]+) \\.\\./zlib/libz\\.a" all args)
-                  (string-append "ld " args " " zlib "/lib/libz.a"))
+                  (string-append "ld " args " " zlib-static "/lib/libz.a"))
                  (("\\(cd \\.\\./zlib; ([-a-zA-Z0-9=./ ]+))")
                   (which "true")))
                (substitute* (find-files "mats" "Mf-.*")
diff --git a/gnu/packages/ci.scm b/gnu/packages/ci.scm
index 067a288004..1cac8b9fb4 100644
--- a/gnu/packages/ci.scm
+++ b/gnu/packages/ci.scm
@@ -186,8 +186,8 @@ their dependencies.")
       (license l:gpl3+))))
 
 (define-public cuirass
-  (let ((commit "8d40c49170971ad7bbf8b97336934dbb3d949fc1")
-        (revision "19"))
+  (let ((commit "fe2b73c2353d106431ed0659345391f14ed64600")
+        (revision "20"))
     (package
       (name "cuirass")
       (version (string-append "0.0.1-" revision "." (string-take commit 7)))
@@ -199,7 +199,7 @@ their dependencies.")
                 (file-name (string-append name "-" version))
                 (sha256
                  (base32
-                  "0xxcapf9ag3zx6131v128vhin5m2j3w2gjbjbpdwr0qkaysh0gvf"))))
+                  "00ldbig2p14qpwrl2i2hnhb9idgbbf0kqnlh4n79rmz96blm7463"))))
       (build-system gnu-build-system)
       (arguments
        '(#:modules ((guix build utils)
diff --git a/gnu/packages/code.scm b/gnu/packages/code.scm
index 4264e292bd..98a86b763f 100644
--- a/gnu/packages/code.scm
+++ b/gnu/packages/code.scm
@@ -403,13 +403,13 @@ functionality such as HTML output.")
   (package
     (name "rtags")
     (version "2.18")
-    (home-page "https://github.com/Andersbakken/rtags")
     (source
      (origin
-       (method url-fetch)
-       (uri
-        (string-append home-page "/archive/v" version ".tar.gz"))
-       (file-name (string-append name "-" version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/Andersbakken/rtags.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (patches (search-patches "rtags-separate-rct.patch"))
        (modules '((guix build utils)))
        (snippet
@@ -424,7 +424,7 @@ functionality such as HTML output.")
              #t)))
        (sha256
         (base32
-         "0scjbp1z201q8njvrxqz7lk2m9b6k2rxd5q1shrng6532r7ndif2"))))
+         "0raqjbkl1ykga4ahgl9xw49cgh3cyqcf42z36z7d6fz1fw192kg0"))))
     (build-system cmake-build-system)
     (arguments
      '(#:build-type "RelWithDebInfo"
@@ -442,6 +442,7 @@ functionality such as HTML output.")
        ("lua" ,lua)
        ("rct" ,rct)
        ("selene" ,selene)))
+    (home-page "https://github.com/Andersbakken/rtags")
     (synopsis "Indexer for the C language family with Emacs integration")
     (description
      "RTags is a client/server application that indexes C/C++ code and keeps a
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index e15f47ac3b..44d1fd4bb5 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -7,7 +7,7 @@
 ;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2015, 2017, 2018 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2015 Jeff Mickey <j@codemac.net>
-;;; Copyright © 2015, 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org>
 ;;; Copyright © 2016, 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
@@ -584,7 +584,23 @@ decompressors when faced with corrupted input.")
       (patches (search-patches "sharutils-CVE-2018-1000097.patch"))
       (sha256
        (base32
-        "16isapn8f39lnffc3dp4dan05b7x6mnc76v6q5nn8ysxvvvwy19b"))))
+        "16isapn8f39lnffc3dp4dan05b7x6mnc76v6q5nn8ysxvvvwy19b"))
+             (modules '((guix build utils)))
+             (snippet
+              '(begin
+                 ;; Adjust the bundled gnulib to work with glibc 2.28.  See e.g.
+                 ;; "m4-gnulib-libio.patch".  This is a phase rather than patch
+                 ;; or snippet to work around <https://bugs.gnu.org/32347>.
+                 (substitute* (find-files "lib" "\\.c$")
+                   (("#if defined _IO_ftrylockfile")
+                    "#if defined _IO_EOF_SEEN"))
+                 (substitute* "lib/stdio-impl.h"
+                   (("^/\\* BSD stdio derived implementations")
+                    (string-append "#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN\n"
+                                   "# define _IO_IN_BACKUP 0x100\n"
+                                   "#endif\n\n"
+                                   "/* BSD stdio derived implementations")))
+                 #t))))
     (build-system gnu-build-system)
     (inputs
      `(("which" ,which)))
@@ -875,8 +891,16 @@ the LZ4 frame format.")
        #:phases
        (modify-phases %standard-phases
          (replace 'configure
-                  (lambda _
-                    (chdir "squashfs-tools"))))))
+           (lambda _
+             (chdir "squashfs-tools")
+             #t))
+         (add-after 'unpack 'fix-glibc-compatability
+           (lambda _
+             (substitute* '("squashfs-tools/mksquashfs.c"
+                            "squashfs-tools/unsquashfs.c")
+               (("<sys/sysinfo.h>")
+                "<sys/sysinfo.h>\n#include <sys/sysmacros.h>"))
+             #t)))))
     (inputs
      `(("lz4" ,lz4)
        ("lzo" ,lzo)
@@ -1728,19 +1752,14 @@ or junctions, and always follows hard links.")
 (define-public zstd
   (package
     (name "zstd")
-    (version "1.3.5")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/facebook/zstd/archive/v"
-                                  version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
-              (sha256
-               (base32
-                "1sifbq18p0hc978g0pq8fymrlpzz1fcxqkbxfqk44z6v9jg5bqfn"))
-              ;; Fix a regression that causes the tests to fail.  Both patches
-              ;; have been merged upstream and will be part of the next release.
-              (patches (search-patches "zstd-fix-stdin-list-without-tty.patch"
-                                       "zstd-fix-stdin-list-test.patch"))))
+    (version "1.3.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/facebook/zstd/releases/download/"
+                           "v" version "/zstd-" version ".tar.gz"))
+       (sha256
+        (base32 "1525b31jmbiczjj1n58nckdzky4cdnbwcsil3zgy4cx03v0a0cp8"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5519b85d0b..efcc2dccb5 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -5875,3 +5875,384 @@ score in order to detect blood doping.  The package also contains functions to
 calculate other scores used in anti-doping programs, such as the ratio of
 hemoglobin to reticulocytes (OFF-score), as well as example data.")
     (license license:gpl2+)))
+
+(define-public r-parmigene
+  (package
+    (name "r-parmigene")
+    (version "1.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "parmigene" version))
+       (sha256
+        (base32
+         "1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"))))
+    (build-system r-build-system)
+    (home-page "https://cran.r-project.org/web/packages/parmigene/")
+    (synopsis "Mutual information estimation for gene network reconstruction")
+    (description
+     "This package provides a parallel estimation of the mutual information
+based on entropy estimates from k-nearest neighbors distances and algorithms
+for the reconstruction of gene regulatory networks.")
+    (license license:agpl3+)))
+
+(define-public r-pscl
+  (package
+    (name "r-pscl")
+    (version "1.5.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "pscl" version))
+       (sha256
+        (base32 "1phf3awsfr4ncqfqzin5m1pz0g7y1zhbcm2sz7358ssw914fd7rc"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-mass" ,r-mass)))
+    (home-page "https://github.com/atahk/pscl/")
+    (synopsis "Political science computational laboratory")
+    (description
+     "The @code{pscl} is an R package providing classes and methods for:
+@enumerate
+@item Bayesian analysis of roll call data (item-response models);
+@item elementary Bayesian statistics;
+@item maximum likelihood estimation of zero-inflated and hurdle models for count
+data;
+@item utility functions.
+@end enumerate")
+    (license license:gpl2)))
+
+(define-public r-accelmissing
+  (package
+    (name "r-accelmissing")
+    (version "1.4")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "accelmissing" version))
+       (sha256
+        (base32 "1nql9inx6azdzi3z4sfm2vdml2mms6krl8wzlf1dn1c97ahn57fy"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-mice" ,r-mice)
+       ("r-pscl" ,r-pscl)))
+    (home-page "https://cran.r-project.org/web/packages/accelmissing/")
+    (synopsis "Missing value imputation for accelerometer data")
+    (description
+     "This package provides a statistical method to impute the missing values in
+accelerometer data.  The methodology includes both parametric and
+semi-parametric multiple imputations under the zero-inflated Poisson lognormal
+model.  It also provides multiple functions to preprocess the accelerometer data
+previous to the missing data imputation.  These include detecting the wearing
+and the non-wearing time, selecting valid days and subjects, and creating plots.")
+    (license license:gpl2+)))
+
+(define-public r-mhsmm
+  (package
+    (name "r-mhsmm")
+    (version "0.4.16")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "mhsmm" version))
+       (sha256
+        (base32 "009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs"))))
+    (build-system r-build-system)
+    (propagated-inputs `(("r-mvtnorm" ,r-mvtnorm)))
+    (home-page "https://github.com/jaredo/mhsmm/")
+    (synopsis "Inference for hidden Markov and semi-Markov models")
+    (description
+     "The @code{r-mhsmm} package implements estimation and prediction methods for
+hidden Markov and semi-Markov models for multiple observation sequences.  Such
+techniques are of interest when observed data is thought to be dependent on some
+unobserved (or hidden) state.  Also, this package is suitable for equidistant
+time series data, with multivariate and/or missing data.  Allows user defined
+emission distributions.")
+    (license license:gpl2+)))
+
+(define-public r-nleqslv
+  (package
+    (name "r-nleqslv")
+    (version "3.3.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "nleqslv" version))
+       (sha256
+        (base32 "1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm"))))
+    (build-system r-build-system)
+    (native-inputs `(("gfortran" ,gfortran)))
+    (home-page "https://cran.r-project.org/web/packages/nleqslv/")
+    (synopsis "Solve systems of nonlinear equations")
+    (description
+     "The @code{r-nleqslv} package solves a system of nonlinear equations using a
+Broyden or a Newton method with a choice of global strategies such as line
+search and trust region.  There are options for using a numerical or user
+supplied Jacobian, for specifying a banded numerical Jacobian and for allowing a
+singular or ill-conditioned Jacobian.")
+    (license license:gpl2+)))
+
+(define-public r-physicalactivity
+  (package
+    (name "r-physicalactivity")
+    (version "0.2-2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "PhysicalActivity" version))
+       (sha256
+        (base32 "14z6plgwyr46vs9m997rvlz8sdglfs9g087an8668zqkzzs2w4ln"))))
+    (properties
+     `((upstream-name . "PhysicalActivity")))
+    (build-system r-build-system)
+    (home-page "https://cran.r-project.org/web/packages/PhysicalActivity/")
+    (synopsis "Procesing accelerometer data for physical activity measurement")
+    (description
+     "This @code{r-physicalactivity} package provides a function @code{wearingMarking}
+for classification of monitor wear and nonwear time intervals in accelerometer
+data collected to assess physical activity.  The package also contains functions
+for making plots of accelerometer data and obtaining the summary of various
+information including daily monitor wear time and the mean monitor wear time
+during valid days.  The revised package version 0.2-1 improved the functions
+regarding speed, robustness and add better support for time zones and daylight
+saving.  In addition, several functions were added:
+@enumerate
+@item the @code{markDelivery} can classify days for ActiGraph delivery by mail;
+@item the @code{markPAI} can categorize physical activity intensity level based
+on user-defined cut-points of accelerometer counts.
+@end enumerate
+  It also supports importing ActiGraph (AGD) files with @code{readActigraph} and
+@code{queryActigraph} functions.")
+    (license license:gpl3+)))
+
+(define-public r-acc
+  (package
+    (name "r-acc")
+    (version "1.3.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "acc" version))
+       (sha256
+        (base32 "1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-circlize" ,r-circlize)
+       ("r-dbi" ,r-dbi)
+       ("r-ggplot2" ,r-ggplot2)
+       ("r-iterators" ,r-iterators)
+       ("r-mhsmm" ,r-mhsmm)
+       ("r-nleqslv" ,r-nleqslv)
+       ("r-physicalactivity" ,r-physicalactivity)
+       ("r-plyr" ,r-plyr)
+       ("r-r-utils" ,r-r-utils)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rcpparmadillo" ,r-rcpparmadillo)
+       ("r-rsqlite" ,r-rsqlite)
+       ("r-zoo" ,r-zoo)))
+    (home-page "https://cran.r-project.org/web/packages/acc/")
+    (synopsis "Exploring accelerometer data")
+    (description
+     "This package processes accelerometer data from uni-axial and tri-axial devices
+and generates data summaries.  Also, includes functions to plot, analyze, and
+simulate accelerometer data.")
+    (license license:gpl2+)))
+
+(define-public r-rbenchmark
+  (package
+    (name "r-rbenchmark")
+    (version "1.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "rbenchmark" version))
+       (sha256
+        (base32 "010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"))))
+    (build-system r-build-system)
+    (home-page "https://cran.r-project.org/web/packages/rbenchmark/")
+    (synopsis "Benchmarking routine for R")
+    (description
+     "This @code{r-rbenchmark} package is inspired by the Perl module Benchmark,
+and is intended to facilitate benchmarking of arbitrary R code.  The library
+consists of just one function, benchmark, which is a simple wrapper around
+system.time.  Given a specification of the benchmarking process (counts of
+replications, evaluation environment) and an arbitrary number of expressions,
+benchmark evaluates each of the expressions in the specified environment,
+replicating the evaluation as many times as specified, and returning the results
+conveniently wrapped into a data frame.")
+    (license license:gpl2+)))
+
+(define-public r-dvmisc
+  (package
+    (name "r-dvmisc")
+    (version "1.1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "dvmisc" version))
+       (sha256
+        (base32 "1dy0yykskwhkql19bhzmbwsgv028afc8jh9yqwbczj6f3vpv31zh"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-mass" ,r-mass)
+       ("r-rbenchmark" ,r-rbenchmark)
+       ("r-rcpp" ,r-rcpp)))
+    (home-page "https://cran.r-project.org/web/packages/dvmisc/")
+    (synopsis "Faster computation of common statistics and miscellaneous functions")
+    (description
+     "This package implements faster versions of base R functions (e.g. mean, standard
+deviation, covariance, weighted mean), mostly written in C++, along with
+miscellaneous functions for various purposes (e.g. create the histogram with
+fitted probability density function or probability mass function curve, create
+the body mass index groups, assess the linearity assumption in logistic
+regression).")
+    (license license:gpl2)))
+
+(define-public r-accelerometry
+  (package
+    (name "r-accelerometry")
+    (version "3.1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "accelerometry" version))
+       (sha256
+        (base32 "13xzrwhr4i1nj9c8vrmfdg2rmrc8n446iihcyxmy99sm99hpzyip"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-dvmisc" ,r-dvmisc)
+       ("r-rcpp" ,r-rcpp)))
+    (home-page "https://cran.r-project.org/web/packages/accelerometry/")
+    (synopsis "Functions for processing accelerometer data")
+    (description
+     "This package provides a collection of functions that perform operations on
+time-series accelerometer data, such as identify the non-wear time, flag minutes
+that are part of an activity bout, and find the maximum 10-minute average count
+value.  The functions are generally very flexible, allowing for a variety of
+algorithms to be implemented.")
+    (license license:gpl3)))
+
+(define-public r-absim
+  (package
+    (name "r-absim")
+    (version "0.2.6")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "AbSim" version))
+       (sha256
+        (base32 "16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m"))))
+    (properties `((upstream-name . "AbSim")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-ape" ,r-ape)
+       ("r-powerlaw" ,r-powerlaw)))
+    (home-page "https://cran.r-project.org/web/packages/AbSim/")
+    (synopsis "Time resolved simulations of antibody repertoires")
+    (description
+     "This package provides simulation methods for the evolution of antibody repertoires.
+  The heavy and light chain variable region of both human and C57BL/6 mice can
+be simulated in a time-dependent fashion.  Both single lineages using one set of
+V-, D-, and J-genes or full repertoires can be simulated.  The algorithm begins
+with an initial V-D-J recombination event, starting the first phylogenetic tree.
+  Upon completion, the main loop of the algorithm begins, with each iteration
+representing one simulated time step.  Various mutation events are possible at
+each time step, contributing to a diverse final repertoire.")
+    (license license:gpl2)))
+
+(define-public r-ac3net
+  (package
+    (name "r-ac3net")
+    (version "1.2.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "Ac3net" version))
+       (sha256
+        (base32 "1ns4n0xxz6p34c11bj0k7nzgmyqr9mis2b0g5nfz37dbikndyqyz"))))
+    (properties `((upstream-name . "Ac3net")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-data-table" ,r-data-table)))
+    (home-page "https://cran.r-project.org/web/packages/Ac3net/")
+    (synopsis "Inferring directional conservative causal core gene networks")
+    (description "This package infers directional Conservative causal core
+(gene) networks (C3NET).  This is a version of the algorithm C3NET with
+directional network.")
+    (license license:gpl3+)))
+
+(define-public r-aca
+  (package
+    (name "r-aca")
+    (version "1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "ACA" version))
+       (sha256
+        (base32 "1i3hm27nvnkvc39xlh0d1blq8q0q02czmvgi3cazmjx3jvxay0vq"))))
+    (properties `((upstream-name . "ACA")))
+    (build-system r-build-system)
+    (home-page "https://cran.r-project.org/web/packages/ACA/")
+    (synopsis "Abrupt change-point or aberration detection in point series")
+    (description
+     "This package offers an interactive function for the detection of breakpoints in
+series.")
+    ;; Any version of the GPL
+    (license (list license:gpl2+ license:gpl3+))))
+
+(define-public r-acceptancesampling
+  (package
+    (name "r-acceptancesampling")
+    (version "1.0-5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "AcceptanceSampling" version))
+       (sha256
+        (base32 "18krmmyn8pn11aqd81kbvka68lnd36mnpdh7p3pz9r4m4vjj007x"))))
+    (properties
+     `((upstream-name . "AcceptanceSampling")))
+    (build-system r-build-system)
+    (home-page "https://cran.r-project.org/web/packages/AcceptanceSampling/")
+    (synopsis "Creation and evaluation of acceptance sampling plans")
+    (description
+     "This @code{r-acceptancesampling} provides functionality for creating and evaluating
+acceptance sampling plans.  Acceptance sampling is a methodology commonly used
+in quality control and improvement.  International standards of acceptance
+sampling provide sampling plans for specific circumstances.  The aim of this
+package is to provide an easy-to-use interface to visualize single, double or
+multiple sampling plans.  In addition, methods have been provided to enable the
+user to assess sampling plans against pre-specified levels of performance, as
+measured by the probability of acceptance for a given level of quality in the
+lot.")
+    (license license:gpl3+)))
+
+(define-public r-acclma
+  (package
+    (name "r-acclma")
+    (version "1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "ACCLMA" version))
+       (sha256
+        (base32 "1na27sp18fq12gp6vxgqw1ffsz2yi1d8xvrxbrzx5g1kqxrayy0v"))))
+    (properties `((upstream-name . "ACCLMA")))
+    (build-system r-build-system)
+    (home-page "https://cran.r-project.org/web/packages/ACCLMA/")
+    (synopsis "ACC & LMA graph plotting")
+    (description
+     "This package contains a function that imports data from a @acronym{CSV,
+Comma-Separated Values} file, or uses manually entered data from the format (x,
+y, weight) and plots the appropriate @acronym{ACC, Absolute Concentration
+Curve} vs @acronym{LOI, Line of Independence} graph and
+@acronym{LMA, @acronym{LOI} Minus @acronym{ACC}} graph.  The main
+function is @code{plotLMA} (source file, header) that takes a data set and plots the
+appropriate @acronym{LMA} and @acronym{ACC} graphs.  If no source file (a
+string) was passed, a manual data entry window is opened.  The header parameter
+indicates by TRUE/FALSE (false by default) if the source @acronym{CSV} file has
+a header row or not.  The dataset should contain only one independent variable
+(x) and one dependent variable (y) and can contain a weight for each
+observation.")
+    (license license:gpl2)))
diff --git a/gnu/packages/crypto.scm b/gnu/packages/crypto.scm
index 33f4abb5ae..77b4dba6d4 100644
--- a/gnu/packages/crypto.scm
+++ b/gnu/packages/crypto.scm
@@ -10,6 +10,7 @@
 ;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2018 Nicolas Goaziou <mail@nicolasgoaziou.fr>
+;;; Copyright © 2018 Nicolò Balzarotti <nicolo@nixo.xyz>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -854,3 +855,36 @@ public-key cryptography.  Asignify is designed to be portable and self-contained
 with zero external dependencies.  Asignify can verify OpenBSD signatures, but it
 cannot sign messages in OpenBSD format yet.")
       (license license:bsd-2))))
+
+(define-public enchive
+  (package
+    (name "enchive")
+    (version "3.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/skeeto/" name "/archive/"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "17hrxpp4cpn10bk48sfvfjc8hghky34agsnypam1v9f36kbalqfk"))
+              (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system gnu-build-system)
+    (arguments
+     '(#:tests? #f                      ; no check target         '
+       #:make-flags (list "CC=gcc" "PREFIX=$(out)")
+       #:phases (modify-phases %standard-phases
+                  (delete 'configure)
+                  (add-after 'install 'post-install
+                    (lambda _
+                      (let* ((out (assoc-ref %outputs "out"))
+                             (lisp (string-append out "/share/emacs/site-lisp")))
+                        (install-file "enchive-mode.el" lisp)
+                        #t))))))
+    (synopsis "Encrypted personal archives")
+    (description
+     "Enchive is a tool to encrypt files to yourself for long-term
+archival.  It's a focused, simple alternative to more complex solutions such as
+GnuPG or encrypted filesystems.  Enchive has no external dependencies and is
+trivial to build for local use.  Portability is emphasized over performance.")
+    (home-page "https://github.com/skeeto/enchive")
+    (license license:unlicense)))
diff --git a/gnu/packages/cups.scm b/gnu/packages/cups.scm
index a704915157..0655e8f393 100644
--- a/gnu/packages/cups.scm
+++ b/gnu/packages/cups.scm
@@ -642,7 +642,7 @@ HP@tie{}LaserJet, and possibly other printers.  See @file{README} for details.")
 (define-public escpr
   (package
     (name "escpr")
-    (version "1.6.20")
+    (version "1.6.30")
     ;; XXX: This currently works.  But it will break as soon as a newer
     ;; version is available since the URLs for older versions are not
     ;; preserved.  An alternative source will be added as soon as
@@ -650,12 +650,12 @@ HP@tie{}LaserJet, and possibly other printers.  See @file{README} for details.")
     (source (origin
               (method url-fetch)
               ;; The uri has to be chopped up in order to satisfy guix lint.
-              (uri (string-append "https://download3.ebz.epson.net/dsc/f/03/00/07/16/23/"
-                                  "804253d188a31ae6a0f2722648248ef952afedfb/"
-                                  "epson-inkjet-printer-escpr-1.6.20-1lsb3.2.tar.gz"))
+              (uri (string-append "https://download3.ebz.epson.net/dsc/f/03/00/08/18/20/"
+                                  "e94de600e28e510c1cfa158929d8b2c0aadc8aa0/"
+                                  "epson-inkjet-printer-escpr-1.6.30-1lsb3.2.tar.gz"))
               (sha256
                (base32
-                "19800pl7kbbgdzbsy9ijmd7dm3ly4kr2h1dxypqpd075g6n0i770"))))
+                "0m8pyfkixisp0vclwxj340isn15zzisal0v2xvv66kxfd68dzf12"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index 4a7aaf7519..a7c406dc25 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -923,7 +923,23 @@ organized in a hash table or B+ tree.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0cdwa4094x3yx7vn98xykvnlp9rngvd58d19vs3vh5hrvggccg93"))))
+                "0cdwa4094x3yx7vn98xykvnlp9rngvd58d19vs3vh5hrvggccg93"))
+              (modules '((guix build utils)))
+              (snippet
+               '(begin
+                  ;; Adjust the bundled gnulib to work with glibc 2.28.  See e.g.
+                  ;; "m4-gnulib-libio.patch".  This is a phase rather than patch
+                  ;; or snippet to work around <https://bugs.gnu.org/32347>.
+                  (substitute* (find-files "lib" "\\.c$")
+                    (("#if defined _IO_ftrylockfile")
+                     "#if defined _IO_EOF_SEEN"))
+                  (substitute* "lib/stdio-impl.h"
+                    (("^/\\* BSD stdio derived implementations")
+                     (string-append "#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN\n"
+                                    "# define _IO_IN_BACKUP 0x100\n"
+                                    "#endif\n\n"
+                                    "/* BSD stdio derived implementations")))
+                  #t))))
     (build-system gnu-build-system)
 
     ;; Running tests in parallel leads to test failures and crashes in
@@ -1457,15 +1473,15 @@ columns, primary keys, unique constraints and relationships.")
 (define-public perl-dbd-mysql
   (package
     (name "perl-dbd-mysql")
-    (version "4.047")
+    (version "4.048")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://cpan/authors/id/C/CA/CAPTTOFU/"
+       (uri (string-append "mirror://cpan/authors/id/M/MI/MICHIELB/"
                            "DBD-mysql-" version ".tar.gz"))
        (sha256
         (base32
-         "0idizgr0hr7sj92fbdlb3gv6cva15jkpaq28wrdw4j4p7awx2mls"))))
+         "1zqmch6c9gq06z90mkmk1skajk2kaggriw19ym5w04l7wv5gydqp"))))
     (build-system perl-build-system)
     (arguments
      `(#:phases
@@ -1767,19 +1783,32 @@ trees (LSM), for sustained throughput under random insert workloads.")
     ;; configure.ac: WiredTiger requires a 64-bit build.
     (supported-systems '("x86_64-linux" "mips64el-linux" "aarch64-linux"))))
 
+(define-public wiredtiger-3
+  (package
+    (inherit wiredtiger)
+    (name "wiredtiger")
+    (version "3.1.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://source.wiredtiger.com/releases/wiredtiger-"
+                                  version ".tar.bz2"))
+              (sha256
+               (base32
+                "014awypv579ascg4jbx4pndj2wld337m79yyzrzyr7hxrff139jx"))))))
+
 (define-public guile-wiredtiger
   (package
     (name "guile-wiredtiger")
-    (version "0.6.3")
+    (version "0.7.0")
     (source (origin
               (method git-fetch)
               (uri (git-reference
                     (url "https://framagit.org/a-guile-mind/guile-wiredtiger.git")
-                    (commit "070ed68139d99c279f058a6c293f00292d35dbd7")))
+                    (commit "340ad4bc2ff4dcc6216a2f5c6f9172ca320ac66b")))
               (file-name (string-append name "-" version "-checkout"))
               (sha256
                (base32
-                "14rna97wsylajzxfif95wnblq85csgcfc666gh5dl0ssgd7x8llh"))))
+                "15j36bvxxzil7qpwlmh1rffqpva3ynvrcpqhhqbj2c9208ayz595"))))
     (build-system gnu-build-system)
     (arguments
      '(#:parallel-tests? #f  ;; tests can't be run in parallel, yet.
@@ -1787,21 +1816,19 @@ trees (LSM), for sustained throughput under random insert workloads.")
        (list (string-append "--with-libwiredtiger-prefix="
                             (assoc-ref %build-inputs "wiredtiger")))
        #:make-flags '("GUILE_AUTO_COMPILE=0")))
-    ;; TODO: Remove microkanren.scm when we have a separate package
-    ;; for it.
     (native-inputs
      `(("autoconf" ,autoconf)
        ("automake" ,automake)
        ("pkg-config" ,pkg-config)))
     (inputs
-     `(("wiredtiger" ,wiredtiger)
+     `(("wiredtiger" ,wiredtiger-3)
        ("guile" ,guile-2.2)))
     (propagated-inputs
-     `(("guile-lib" ,guile-lib)))                 ;for (htmlprag)
+     `(("guile-bytestructures" ,guile-bytestructures)))
     (synopsis "WiredTiger bindings for GNU Guile")
     (description
      "This package provides Guile bindings to the WiredTiger ``NoSQL''
-database.  Various higher level database abstractions.")
+database.")
     (home-page "https://framagit.org/a-guile-mind/guile-wiredtiger")
     (license license:gpl3+)))
 
@@ -2416,13 +2443,13 @@ SQLAlchemy Database Toolkit for Python.")
 (define-public python-pickleshare
   (package
     (name "python-pickleshare")
-    (version "0.7.4")
+    (version "0.7.5")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pickleshare" version))
        (sha256
-        (base32 "0yvk14dzxk7g6qpr7iw23vzqbsr0dh4ij4xynkhnzpfz4xr2bac4"))))
+        (base32 "1jmghg3c53yp1i8cm6pcrm280ayi8621rwyav9fac7awjr3kss47"))))
     (build-system python-build-system)
     (arguments
      `(#:phases (modify-phases %standard-phases
@@ -2669,12 +2696,14 @@ parsing code in hiredis.  It primarily speeds up parsing of multi bulk replies."
      `(#:tests? #f))
     (home-page "https://github.com/jamesls/fakeredis")
     (synopsis "Fake implementation of redis API for testing purposes")
-    (description "Fakeredis is a pure python implementation of the redis-py
-python client that simulates talking to a redis server.  This was created for a
-single purpose: to write unittests.  Setting up redis is not hard, but many time
- you want to write unittests that do not talk to an external server (such as
-redis).  This module now allows tests to simply use this module as a reasonable
-substitute for redis.")
+    (description
+     "Fakeredis is a pure-Python implementation of the redis-py Python client
+that simulates talking to a redis server.  It was created for a single purpose:
+to write unit tests.
+
+Setting up redis is not hard, but one often wants to write unit tests that don't
+talk to an external server such as redis.  This module can be used as a
+reasonable substitute.")
     (license license:bsd-3)))
 
 (define-public python2-fakeredis
diff --git a/gnu/packages/debian.scm b/gnu/packages/debian.scm
index 1974672fb6..5ea263149e 100644
--- a/gnu/packages/debian.scm
+++ b/gnu/packages/debian.scm
@@ -1,6 +1,9 @@
+;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
+;;; This file is part of GNU Guix.
+;;;
 ;;; GNU Guix is free software; you can redistribute it and/or modify it
 ;;; under the terms of the GNU General Public License as published by
 ;;; the Free Software Foundation; either version 3 of the License, or (at
@@ -71,7 +74,7 @@ contains the archive keys used for that.")
 (define-public ubuntu-keyring
   (package
     (name "ubuntu-keyring")
-    (version "2018.02.28")
+    (version "2018.09.18.1")
     (source
       (origin
         (method url-fetch)
@@ -79,7 +82,7 @@ contains the archive keys used for that.")
                             "+files/" name "_" version ".tar.gz"))
         (sha256
          (base32
-          "1zj3012cz7rlx9pm39wnwa0lmi1h38n6bkgbz81vnmcsvqsc9a3a"))))
+          "0csx2n62rj9rxjv4y8qhby7l9rbybfwrb0406pc2cjr7f2yk91af"))))
     (build-system trivial-build-system)
     (arguments
      `(#:modules ((guix build utils))
diff --git a/gnu/packages/dico.scm b/gnu/packages/dico.scm
index a85987d9b1..d96dbb86d9 100644
--- a/gnu/packages/dico.scm
+++ b/gnu/packages/dico.scm
@@ -1,6 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2015, 2016, 2018 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2016, 2018 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -37,14 +38,14 @@
 (define-public dico
   (package
     (name "dico")
-    (version "2.6")
+    (version "2.7")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://gnu/dico/dico-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0zmi041gv5nd5fmyzgdrgrsy2pvjaq9p8dvvhxwi842hiyng5b7i"))))
+               "0dg4aacnmlf3ljssd7dwh8z5644xzq8k1501mbsx8nz8p8a9mbsq"))))
     (build-system gnu-build-system)
     (arguments
      '(#:configure-flags (list (string-append "--with-guile-site-dir=" %output
@@ -57,7 +58,11 @@
                       ;; infrastructure.  Gag it.
                       (setenv "GUILE_AUTO_COMPILE" "0")
                       (setenv "GUILE_WARN_DEPRECATED" "no")
-                      #t)))))
+                      #t))
+                  (replace 'check
+                    (lambda _
+                      ;; Test '71: append + dooffs + env' fails if $V is not 2.
+                      (invoke "make" "check" "V=2"))))))
     (inputs
      `(("m4" ,m4)                                 ;used at run time
        ("pcre" ,pcre)
diff --git a/gnu/packages/dictionaries.scm b/gnu/packages/dictionaries.scm
index 9f63223453..ce7ef1cf75 100644
--- a/gnu/packages/dictionaries.scm
+++ b/gnu/packages/dictionaries.scm
@@ -4,6 +4,7 @@
 ;;; Copyright © 2016 Sou Bunnbu <iyzsong@gmail.com>
 ;;; Copyright © 2017, 2018 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Pierre-Antoine Rouby <contact@parouby.fr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -219,7 +220,7 @@ It comes with a German-English dictionary with approximately 270,000 entries.")
                            "Grammalecte-fr-v" version ".zip"))
        (sha256
         (base32
-         "1flsahqw2r0cmg0bixpl5w0acricmdh2cf4lf9zr66ydgmjnmv2s"))))
+         "11byjs3ggdhia5f4vyfqfvbbczsfqimll98h98g7hlsrm7vrifb0"))))
     (build-system python-build-system)
     (home-page "https://www.dicollecte.org")
     (synopsis  "French spelling and grammar checker")
diff --git a/gnu/packages/disk.scm b/gnu/packages/disk.scm
index 206f9c71bb..4c4a3b849f 100644
--- a/gnu/packages/disk.scm
+++ b/gnu/packages/disk.scm
@@ -30,22 +30,24 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages disk)
-  #:use-module ((guix licenses) #:prefix license:)
-  #:use-module (guix packages)
-  #:use-module (guix download)
-  #:use-module (guix git-download)
-  #:use-module (guix build-system gnu)
-  #:use-module (guix build-system trivial)
-  #:use-module (guix build-system python)
   #:use-module (gnu packages)
+  #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
+  #:use-module (gnu packages bash)
+  #:use-module (gnu packages c)
   #:use-module (gnu packages check)
+  #:use-module (gnu packages compression)
+  #:use-module (gnu packages cryptsetup)
   #:use-module (gnu packages databases)
   #:use-module (gnu packages docbook)
+  #:use-module (gnu packages documentation)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages glib)
-  #:use-module (gnu packages gtk)
   #:use-module (gnu packages gnome)
+  #:use-module (gnu packages gnupg)
+  #:use-module (gnu packages gnuzilla)
+  #:use-module (gnu packages gtk)
+  #:use-module (gnu packages guile)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages perl)
@@ -53,20 +55,18 @@
   #:use-module (gnu packages popt)
   #:use-module (gnu packages python)
   #:use-module (gnu packages readline)
-  #:use-module (gnu packages guile)
-  #:use-module (gnu packages compression)
+  #:use-module (gnu packages swig)
   #:use-module (gnu packages vim)
   #:use-module (gnu packages w3m)
-  #:use-module (gnu packages xml)
-  #:use-module (gnu packages cryptsetup)
-  #:use-module (gnu packages gnuzilla)
-  #:use-module (gnu packages gnupg)
-  #:use-module (gnu packages swig)
-  #:use-module (gnu packages autotools)
   #:use-module (gnu packages web)
-  #:use-module (gnu packages documentation)
-  #:use-module (gnu packages bash)
-  #:use-module (gnu packages c))
+  #:use-module (gnu packages xml)
+  #:use-module (guix build-system gnu)
+  #:use-module (guix build-system python)
+  #:use-module (guix build-system trivial)
+  #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix packages))
 
 (define-public parted
   (package
@@ -518,24 +518,25 @@ Duperemove can also take input from the @command{fdupes} program.")
 (define-public ranger
   (package
     (name "ranger")
-    (version "1.9.1")
+    (version "1.9.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://ranger.github.io/"
                                   "ranger-" version ".tar.gz"))
               (sha256
                (base32
-                "1lnzkrxcnlwnyi3z0v8ybyp8d5rm26qm35rr68kbs2lbs06inha0"))))
+                "12kbsqakbxs09y0x8hy66mmaf72rk0p850x7ryk2ghkq7wfin78f"))))
     (build-system python-build-system)
     (inputs
      `(("w3m" ,w3m)))
-    (native-inputs                      ;for tests
-     `(("python-pytest" ,python-pytest)
-       ("python-pylint" ,python-pylint)
-       ("python-flake8" ,python-flake8)
-       ("which" ,which)))
+    (native-inputs
+     `(("which" ,which)
+
+       ;; For tests.
+       ("python-pytest" ,python-pytest)))
     (arguments
-     '(#:test-target "test"
+     '( ;; The 'test' target runs developer tools like pylint, which fail.
+       #:test-target "test_pytest"
        #:phases
        (modify-phases %standard-phases
          (add-after 'configure 'wrap-program
@@ -548,7 +549,11 @@ Duperemove can also take input from the @command{fdupes} program.")
                                    "/libexec/w3m/w3mimgdisplay")))
                (wrap-program ranger
                  `("W3MIMGDISPLAY_PATH" ":" prefix (,w3mimgdisplay)))
-               #t))))))
+               #t)))
+         (replace 'check
+           ;; The default check phase simply prints 'Ran 0 tests in 0.000s'.
+           (lambda* (#:key test-target #:allow-other-keys)
+             (invoke "make" test-target))))))
     (home-page "https://ranger.github.io/")
     (synopsis "Console file manager")
     (description "ranger is a console file manager with Vi key bindings.  It
@@ -560,28 +565,28 @@ automatically finding out which program to use for what file type.")
 (define-public volume-key
   (package
     (name "volume-key")
-    (version "0.3.11")
+    (version "0.3.12")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://releases.pagure.org/volume_key/volume_key-"
                                   version ".tar.xz"))
               (sha256
                (base32
-                "0vaz15rcgdkh5z4yxc22x76wi44gh50jxnrqz5avaxz4bb17kcp6"))))
+                "16rhfz6sjwxlmss1plb2wv2i3jq6wza02rmz1d2jrlnsq67p98vc"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)
        ("util-linux" ,util-linux)
        ("swig" ,swig)
-       ("python" ,python-3)))           ; Used to generate the Python bindings.
+       ("python" ,python-3)))           ; used to generate the Python bindings
     (inputs
      `(("cryptsetup" ,cryptsetup)
        ("nss" ,nss)
-       ("lvm2" ,lvm2)                   ; For "-ldevmapper".
+       ("lvm2" ,lvm2)                   ; for "-ldevmapper"
        ("glib" ,glib)
        ("gpgme" ,gpgme)))
     (arguments
-     `(#:tests? #f ; Not sure how tests are supposed to pass, even when run manually.
+     `(#:tests? #f ; not sure how tests are supposed to pass, even when run manually
        #:phases
        (modify-phases %standard-phases
          (add-before 'configure 'patch-python.h-path
@@ -601,27 +606,28 @@ passphrases.")
 (define-public ndctl
   (package
     (name "ndctl")
-    (version "61.2")
+    (version "63")
     (source (origin
               (method git-fetch)
               (uri (git-reference
-                    (url "https://github.com/pmem/ndctl")
+                    (url "https://github.com/pmem/ndctl.git")
                     (commit (string-append "v" version))))
-              (file-name (string-append name "-" version "-checkout"))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "0vid78jzhmzh505bpwn8mvlamfhcvl6rlfjc29y4yn7zslpydxl7"))))
+                "060nsza8xic769bxj3pvl70a9885bwrc0myw16l095i3z6w7yzwq"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("asciidoc" ,asciidoc)
        ("automake" ,automake)
        ("autoconf" ,autoconf)
+       ("bash-completion" ,bash-completion)
        ("docbook-xsl" ,docbook-xsl)
        ("libtool" ,libtool)
        ("libxml2" ,libxml2)
        ("pkg-config" ,pkg-config)
        ("xmlto" ,xmlto)
-       ;; Required for offline docbook generation:
+       ;; Required for offline docbook generation.
        ("which" ,which)))
     (inputs
      `(("eudev" ,eudev)
@@ -629,16 +635,18 @@ passphrases.")
        ("kmod" ,kmod)
        ("util-linux" ,util-linux)))
     (arguments
-     `(#:phases
+     `(#:configure-flags
+       (list "--disable-asciidoctor"    ; use docbook-xsl instead
+             "--without-systemd")
+       #:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'autogen
+         (add-after 'unpack 'patch-FHS-file-names
            (lambda _
-             (substitute* "autogen.sh"
-               (("/bin/sh") (which "sh")))
              (substitute* "git-version-gen"
                (("/bin/sh") (which "sh")))
              (substitute* "git-version"
-               (("/bin/bash") (which "bash"))))))
+               (("/bin/bash") (which "bash")))
+             #t)))
        #:make-flags
        (let ((out (assoc-ref %outputs "out")))
          (list (string-append "BASH_COMPLETION_DIR=" out
@@ -698,14 +706,15 @@ to create devices with respective mappings for the ATARAID sets discovered.")
 (define-public libblockdev
   (package
     (name "libblockdev")
-    (version "2.18")
+    (version "2.20")
     (source (origin
               (method url-fetch)
-              (uri (string-append "https://github.com/storaged-project/libblockdev/releases/download/"
+              (uri (string-append "https://github.com/storaged-project/"
+                                  "libblockdev/releases/download/"
                                   version "-1/libblockdev-" version ".tar.gz"))
               (sha256
                (base32
-                "1a3kpdr9s6g7nfibazi92i27wbv692b5gm2r24gimis6l6jq4pbh"))))
+                "092snk5jyv48na4d46v1ckiy859zwpb3r0ivnxv3km5vzsp76y7q"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)
@@ -738,6 +747,4 @@ manipulation of block devices.  It has a plugin-based architecture where each
 technology (like LVM, Btrfs, MD RAID, Swap...) is implemented in a separate
 plugin, possibly with multiple implementations (e.g. using LVM CLI or the new
 LVM D-Bus API).")
-    ;; XXX: Copying says LGPL2.1, but the source files with license
-    ;; information are GPL2+.
-    (license license:gpl2+)))
+    (license license:lgpl2.1+)))
diff --git a/gnu/packages/dns.scm b/gnu/packages/dns.scm
index 00135294be..ad1a8638bc 100644
--- a/gnu/packages/dns.scm
+++ b/gnu/packages/dns.scm
@@ -104,7 +104,7 @@ and BOOTP/TFTP for network booting of diskless machines.")
 (define-public isc-bind
   (package
     (name "bind")
-    (version "9.12.2-P1")
+    (version "9.12.2-P2")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -112,7 +112,7 @@ and BOOTP/TFTP for network booting of diskless machines.")
                     version ".tar.gz"))
               (sha256
                (base32
-                "192ld6w8f4n46hvdmmzzrfkd28apf4dwmbpbi3j2q1d2p315ajww"))))
+                "0gk9vwqlbdmn10m21f2awvmiccfbadvcwi8zsgm91awbx4k7h0l7"))))
     (build-system gnu-build-system)
     (outputs `("out" "utils"))
     (inputs
@@ -289,6 +289,77 @@ asynchronous fashion.")
                    (license:non-copyleft "file://LICENSE") ; includes.h
                    license:openssl))))
 
+(define-public nsd
+  (package
+    (name "nsd")
+    (version "4.1.25")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://www.nlnetlabs.nl/downloads/nsd/nsd-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "0zyzjd3wmq258jiry62ci1z23qfd0rc5ggnpmybc60xvpddgynwg"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:configure-flags
+       (list "--enable-pie"             ; fully benefit from ASLR
+             "--enable-ratelimit"
+             "--enable-recvmmsg"
+             "--enable-relro-now"       ; protect GOT and .dtor areas
+             "--disable-radix-tree"
+             (string-append "--with-libevent="
+                            (assoc-ref %build-inputs "libevent"))
+             (string-append "--with-ssl="
+                            (assoc-ref %build-inputs "openssl"))
+             "--with-configdir=/etc"
+             "--with-nsd_conf_file=/etc/nsd/nsd.conf"
+             "--with-logfile=/var/log/nsd.log"
+             "--with-pidfile=/var/db/nsd/nsd.pid"
+             "--with-dbfile=/var/db/nsd/nsd.db"
+             "--with-zonesdir=/etc/nsd"
+             "--with-xfrdfile=/var/db/nsd/xfrd.state"
+             "--with-zonelistfile=/var/db/nsd/zone.list")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'patch-installation-paths
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (doc (string-append out "/share/doc/" ,name "-" ,version)))
+               ;; The ‘make install’ target tries to create the parent
+               ;; directories of run-time things like ‘pidfile’ above, and
+               ;; useless empty directories like 'configdir'.  Remove such
+               ;; '$(INSTALL)' lines and install the example configuration file
+               ;; in an appropriate location.
+               (substitute* "Makefile.in"
+                 ((".*INSTALL.*\\$\\((config|pid|xfr|db)dir" command)
+                  (string-append "#" command))
+                 (("\\$\\(nsdconfigfile\\)\\.sample" file-name)
+                  (string-append doc "/examples/" file-name)))
+               #t))))
+       #:tests? #f))                    ; no tests
+    (inputs
+     `(("libevent" ,libevent)
+       ("openssl" ,openssl)))
+    (home-page "https://www.nlnetlabs.nl/projects/nsd/about/")
+    (synopsis "Authoritative DNS name server")
+    (description "@dfn{NSD}, short for Name Server Daemon, is an authoritative
+name server for the Domain Name System (@dfn{DNS}).  It aims to be a fast and
+RFC-compliant nameserver.
+
+NSD uses zone information compiled via @command{zonec} into a binary database
+file (@file{nsd.db}).  This allows fast startup of the name service daemon and
+allows syntax-structural errors in zone files to be flagged at compile time,
+before being made available to NSD service itself.  However, most traditional
+BIND-style zone files can be directly imported into NSD without modification.
+
+The collection of programs and processes that make up NSD are designed so that
+the daemon itself runs as a non-privileged user and can be easily configured to
+run in a @code{chroot} jail, thus making any security flaws in NSD less likely
+to result in system-wide compromise.")
+    (license (list license:bsd-3))))
+
 (define-public unbound
   (package
     (name "unbound")
diff --git a/gnu/packages/education.scm b/gnu/packages/education.scm
index 52dde26f44..8b02adc182 100644
--- a/gnu/packages/education.scm
+++ b/gnu/packages/education.scm
@@ -243,7 +243,7 @@ easy.")
 (define-public snap
   (package
     (name "snap")
-    (version "4.2.1.3")
+    (version "4.2.1.4")
     (source
      (origin
        (method git-fetch)
@@ -253,7 +253,7 @@ easy.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0n32hg8rx6alk5j58l76gzmicrg1bp7jagz5mh1zrg7591aicjal"))))
+         "0yc0w0cdhvi0nwqqrann2v3y0n7shxh7irgixqvlavp4k49d7aqj"))))
     (build-system trivial-build-system)
     (arguments
      `(#:modules ((guix build utils))
diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm
index 9b3a90bd33..1069b9e3c3 100644
--- a/gnu/packages/emacs.scm
+++ b/gnu/packages/emacs.scm
@@ -39,6 +39,7 @@
 ;;; Copyright © 2018 Jack Hill <jackhill@jackhill.us>
 ;;; Copyright © 2018 Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
 ;;; Copyright © 2018 Alex Branham <alex.branham@gmail.com>
+;;; Copyright © 2018 Thorsten Wilms <t_w_@freenet.de>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -118,6 +119,7 @@
   #:use-module (gnu packages gnupg)
   #:use-module (gnu packages video)
   #:use-module (gnu packages haskell)
+  #:use-module (gnu packages wordnet)
   #:use-module (guix utils)
   #:use-module (srfi srfi-1)
   #:use-module (ice-9 match))
@@ -334,9 +336,9 @@ editor (without an X toolkit)" )
 ;;; Emacs hacking.
 ;;;
 
-(define-public geiser
+(define-public emacs-geiser
   (package
-    (name "geiser")
+    (name "emacs-geiser")
     (version "0.10")
     (source (origin
              (method url-fetch)
@@ -369,7 +371,10 @@ implementation, Emacs and, ultimately, the schemer, giving them access to live
 metadata.")
     (license license:bsd-3)))
 
-(define-public paredit
+(define-public geiser
+  (deprecated-package "geiser" emacs-geiser))
+
+(define-public emacs-paredit
   (package
     (name "emacs-paredit")
     (version "24")
@@ -394,6 +399,9 @@ for those who may want transient periods of unbalanced parentheses, such as
 when typing parentheses directly or commenting out code line by line.")
     (license license:gpl3+)))
 
+(define-public paredit
+  (deprecated-package "paredit" emacs-paredit))
+
 (define-public git-modes
   (package
     (name "emacs-git-modes")
@@ -443,15 +451,15 @@ For remote processes a substitute is provided, which communicates with Emacs
 on stdout instead of using a socket as the Emacsclient does.")
     (license license:gpl3+)))
 
-(define-public magit
+(define-public emacs-magit
   (package
-    (name "magit")
+    (name "emacs-magit")
     (version "2.13.0")
     (source (origin
              (method url-fetch)
              (uri (string-append
                    "https://github.com/magit/magit/releases/download/"
-                   version "/" name "-" version ".tar.gz"))
+                   version "/magit-" version ".tar.gz"))
              (sha256
               (base32
                "1ygaah3dd3nxpyd17297xgvdcgr7pgzzwlmpnmchki0kiwgg3sbc"))))
@@ -511,9 +519,12 @@ cherry picking, reverting, merging, rebasing, and other common Git
 operations.")
     (license license:gpl3+)))
 
-(define-public magit-svn
+(define-public magit
+  (deprecated-package "magit" emacs-magit))
+
+(define-public emacs-magit-svn
   (package
-    (name "magit-svn")
+    (name "emacs-magit-svn")
     (version "2.2.0")
     (source (origin
               (method url-fetch)
@@ -530,7 +541,7 @@ operations.")
                      ("gzip" ,gzip)))
     (propagated-inputs `(("dash" ,emacs-dash)
                          ("with-editor" ,emacs-with-editor)
-                         ("magit" ,magit)))
+                         ("magit" ,emacs-magit)))
     (arguments
      `(#:modules ((guix build utils)
                   (guix build emacs-utils))
@@ -576,6 +587,9 @@ operations.")
 support for Git-SVN.")
     (license license:gpl3+)))
 
+(define-public magit-svn
+  (deprecated-package "magit-svn" emacs-magit-svn))
+
 (define-public emacs-magit-popup
   (package
     (name "emacs-magit-popup")
@@ -640,9 +654,9 @@ Gitlab APIs from Emacs packages.  It abstracts access to API resources using
 only a handful of functions that are not resource-specific.")
     (license license:gpl3+)))
 
-(define-public haskell-mode
+(define-public emacs-haskell-mode
   (package
-    (name "haskell-mode")
+    (name "emacs-haskell-mode")
     (version "16.1")
     (source (origin
               (method url-fetch)
@@ -730,7 +744,10 @@ only a handful of functions that are not resource-specific.")
 programs.")
     (license license:gpl3+)))
 
-(define-public flycheck
+(define-public haskell-mode
+  (deprecated-package "haskell-mode" emacs-haskell-mode))
+
+(define-public emacs-flycheck
   (package
     (name "emacs-flycheck")
     (version "31")
@@ -909,7 +926,7 @@ provides an optional IDE-like error list.")
 ;;; Multimedia.
 ;;;
 
-(define-public emms
+(define-public emacs-emms
   (package
     (name "emacs-emms")
     (version "5.0")
@@ -1049,7 +1066,7 @@ light user interface.")
 
 (define-public emacs-emms-player-mpv
   ;; A new mpv backend is included in Emms from 5.0.
-  (deprecated-package "emacs-emms-player-mpv" emms))
+  (deprecated-package "emacs-emms-player-mpv" emacs-emms))
 
 (define-public emacs-emms-mode-line-cycle
   (package
@@ -1066,7 +1083,7 @@ light user interface.")
          "0ifszi930pnaxk1x8pcydmvnp06868gc7nfx14q17zbajbx735k6"))))
     (build-system emacs-build-system)
     (propagated-inputs
-     `(("emms" ,emms)))
+     `(("emms" ,emacs-emms)))
     (home-page "https://github.com/momomo5717/emms-mode-line-cycle")
     (synopsis "Display the EMMS mode line as a ticker")
     (description
@@ -1079,9 +1096,9 @@ within a specified width.  It is useful for displaying long track titles.")
 ;;; Miscellaneous.
 ;;;
 
-(define-public bbdb
+(define-public emacs-bbdb
   (package
-    (name "bbdb")
+    (name "emacs-bbdb")
     (version "3.1.2")
     (source (origin
               (method url-fetch)
@@ -1120,6 +1137,9 @@ like.  It can be linked with various Emacs mail clients (Message and Mail
 mode, Rmail, Gnus, MH-E, and VM).  BBDB is fully customizable.")
     (license license:gpl3+)))
 
+(define-public bbdb
+  (deprecated-package "bbdb" emacs-bbdb))
+
 (define-public emacs-aggressive-indent
   (package
     (name "emacs-aggressive-indent")
@@ -1356,7 +1376,7 @@ environment set through Direnv.")
 (define-public emacs-ggtags
   (package
     (name "emacs-ggtags")
-    (version "0.8.12")
+    (version "0.8.13")
     (source
      (origin
        (method url-fetch)
@@ -1364,7 +1384,7 @@ environment set through Direnv.")
                            version ".el"))
        (sha256
         (base32
-         "0ny3llk021g6r0s75xdm4hzpbxv393ddm2r6f2xdk8kqnq4gnirp"))))
+         "1qa7lcrcmf76sf6dy8sxbg4adq7rg59fm0n5848w3qxgsr0h45fg"))))
     (build-system emacs-build-system)
     (home-page "https://github.com/leoliu/ggtags")
     (synopsis "Frontend to the GNU Global source code tagging system")
@@ -1720,7 +1740,7 @@ type, for example: packages, buffers, files, etc.")
      `(("guile" ,guile-2.2)
        ("guix" ,guix)))
     (propagated-inputs
-     `(("geiser" ,geiser)
+     `(("geiser" ,emacs-geiser)
        ("guile-gcrypt" ,guile-gcrypt)
        ("dash" ,emacs-dash)
        ("bui" ,emacs-bui)
@@ -2142,7 +2162,7 @@ keep pressing the key until it selects what you want.  There's also
 (define-public emacs-fill-column-indicator
   (package
     (name "emacs-fill-column-indicator")
-    (version "1.81")
+    (version "1.89")
     (source
      (origin
        (method url-fetch)
@@ -2151,7 +2171,7 @@ keep pressing the key until it selects what you want.  There's also
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "1xwyqbjbbicmvhlb85vg4j5snwy1vd7rfk89ws4viws5ljkhhyg8"))))
+         "09ab01np14bdcsr38xf95kpnvxzqr46mdjmphg3pigwnx39a3jvg"))))
     (build-system emacs-build-system)
     (home-page "https://www.emacswiki.org/emacs/FillColumnIndicator")
     (synopsis "Graphically indicate the fill column")
@@ -2376,7 +2396,7 @@ in Lisp modes.")
                 "1k0sm552iawi49v4zis6dbb81d1rzgky9v0dpv7nj31gnb7bmy7k"))))
     (build-system emacs-build-system)
     (native-inputs
-     `(("ert-runner" ,ert-runner)))
+     `(("ert-runner" ,emacs-ert-runner)))
     (arguments
      `(#:tests? #t
        #:test-command '("ert-runner")))
@@ -2492,7 +2512,7 @@ snippets for yasnippet.")
 (define-public emacs-smart-mode-line
   (package
     (name "emacs-smart-mode-line")
-    (version "2.10.1")
+    (version "2.12.0")
     (source
      (origin
        (method url-fetch)
@@ -2501,7 +2521,7 @@ snippets for yasnippet.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "0i9wajabrrsjzwd842q0m2611kf0q31p9hg1pdj81177gynkw8l8"))))
+         "1hn8s6laijmg7w1bgwdfrki6h9vxkbgr8rmmssvd5yqyad5w2sba"))))
     (build-system emacs-build-system)
     (propagated-inputs
      `(("emacs-rich-minority" ,emacs-rich-minority)))
@@ -2662,7 +2682,7 @@ framework for Emacs Lisp to be used with @code{ert}.")
     (native-inputs
      `(("emacs-ert-expectations" ,emacs-ert-expectations)
        ("emacs-undercover" ,emacs-undercover)
-       ("ert-runner" ,ert-runner)))
+       ("ert-runner" ,emacs-ert-runner)))
     (synopsis "Simple asynchronous functions for Emacs Lisp")
     (description
      "The @code{deferred.el} library provides support for asynchronous tasks.
@@ -2671,7 +2691,7 @@ The API is almost the same as that of
 for asynchronous tasks.")
     (license license:gpl3+)))
 
-(define-public butler
+(define-public emacs-butler
   (package
     (name "emacs-butler")
     (version "0.2.4")
@@ -2822,7 +2842,7 @@ completion candidate when using the Company text completion framework.")
 simultaneous cursors.")
     (license license:gpl3+)))
 
-(define-public typo
+(define-public emacs-typo
   (package
     (name "emacs-typo")
     (version "1.1")
@@ -3014,7 +3034,7 @@ in @code{html-mode}.")
 (define-public emacs-slime
   (package
     (name "emacs-slime")
-    (version "2.20")
+    (version "2.22")
     (source
      (origin
        (file-name (string-append name "-" version ".tar.gz"))
@@ -3024,7 +3044,7 @@ in @code{html-mode}.")
              version ".tar.gz"))
        (sha256
         (base32
-         "086lq5y4pvj9wihy0si02xxvyzpzz8mcg3hz1cvy9zxlyjwzr1gk"))))
+         "07vaib1n4zyh5yy30gdpq0bc5cv6w84piml5b3mfc9ibjhaykkms"))))
     (build-system emacs-build-system)
     (native-inputs
      `(("texinfo" ,texinfo)))
@@ -3071,7 +3091,7 @@ an Emacs minor mode that complements the standard @command{lisp-mode}.
 While lisp-mode supports editing Lisp source files, @command{slime-mode}
 adds support for interacting with a running Common Lisp process
 for compilation, debugging, documentation lookup, and so on.")
-    (license license:gpl2+)))
+    (license (list license:gpl2+ license:public-domain))))
 
 (define-public emacs-popup
   (package
@@ -3981,7 +4001,7 @@ state and will work even without lispy being enabled.")
     (native-inputs
      `(("emacs-dash" ,emacs-dash)
        ("emacs-s" ,emacs-s)
-       ("ert-runner" ,ert-runner)))
+       ("ert-runner" ,emacs-ert-runner)))
     (arguments
      `(#:tests? #t
        #:test-command '("ert-runner")))
@@ -4287,14 +4307,14 @@ strings, and code folding.")
 (define-public emacs-nodejs-repl
   (package
     (name "emacs-nodejs-repl")
-    (version "0.1.6")
+    (version "0.2.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/abicky/nodejs-repl.el"
                                   "/archive/" version ".tar.gz"))
               (sha256
                (base32
-                "0sphg1jxi3a5l0gqdp27d0qgyjaiq2p293av9zm8ksm0vwqp3fr9"))
+                "0hq2cqdq2668yf48g7qnkci90nhih1gnhacsgz355jnib56lhmkz"))
               (file-name (string-append name "-" version ".tar.gz"))))
     (build-system emacs-build-system)
     (home-page "https://github.com/abicky/nodejs-repl.el")
@@ -4353,7 +4373,7 @@ indentation and filling of comments and C preprocessor fontification.")
     (propagated-inputs
      `(("emacs-dash" ,emacs-dash)
        ("emacs-s" ,emacs-s)
-       ("emacs-flycheck" ,flycheck)
+       ("emacs-flycheck" ,emacs-flycheck)
        ("emacs-typescript-mode" ,emacs-typescript-mode)))
     (home-page "https://github.com/ananthakumaran/tide")
     (synopsis "Typescript IDE for Emacs")
@@ -4518,7 +4538,7 @@ provide the historic behavior of @code{flet}, as well as
      `(#:tests? #t
        #:test-command '("ert-runner")))
     (native-inputs
-     `(("ert-runner" ,ert-runner)))
+     `(("ert-runner" ,emacs-ert-runner)))
     (propagated-inputs
      `(("emacs-el-x" ,emacs-el-x)))
     (home-page "https://github.com/sigma/mocker.el")
@@ -4584,7 +4604,7 @@ functions to assist in reviewing changes on files.")
        #:tests? #t
        #:test-command '("ert-runner")))
     (native-inputs
-     `(("ert-runner" ,ert-runner)
+     `(("ert-runner" ,emacs-ert-runner)
        ("emacs-mocker" ,emacs-mocker)))
     (home-page "https://github.com/jorgenschaefer/pyvenv")
     (synopsis "Virtualenv minor mode for Emacs")
@@ -4669,7 +4689,7 @@ indentation (space indentation only).
        ("pyvenv" ,emacs-pyvenv)
        ("s" ,emacs-s)))
     (native-inputs
-     `(("ert-runner" ,ert-runner)
+     `(("ert-runner" ,emacs-ert-runner)
        ("emacs-f" ,emacs-f)
        ("python" ,python-wrapper)
        ("python-autopep8" ,python-autopep8)
@@ -4737,14 +4757,14 @@ of its name.")
 (define-public emacs-rainbow-mode
   (package
     (name "emacs-rainbow-mode")
-    (version "0.13")
+    (version "1.0.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
                     "http://elpa.gnu.org/packages/rainbow-mode-" version ".el"))
               (sha256
                (base32
-                "1d3aamx6qgqqpqijwsr02ggwrh67gfink1bir0692alfkm3zdddl"))))
+                "0cpga4ax635rfpj7y2vmh7ank0yw00dcy20gjg1mj74r97by8csf"))))
     (build-system emacs-build-system)
     (home-page "http://elpa.gnu.org/packages/rainbow-mode.html")
     (synopsis "Colorize color names in buffers")
@@ -5180,11 +5200,11 @@ extensions.")
       (license license:gpl3+))))
 
 (define-public emacs-evil-collection
-  (let ((commit "b55ae90f367e103e6568ae00779a8a51c68a0104")
-        (revision "3"))
+  (let ((commit "abc9dd60f71ccc1f24803a12d853f84b4a8b258c")
+        (revision "4"))
     (package
       (name "emacs-evil-collection")
-      (version (git-version "20180911" revision commit))
+      (version (git-version "0.0.1" revision commit))
       (source (origin
                 (method git-fetch)
                 (uri (git-reference
@@ -5193,7 +5213,7 @@ extensions.")
                 (file-name (string-append name "-" version "-checkout"))
                 (sha256
                  (base32
-                  "0n7bzi5s7rqi78l1424sxvsk2g46z7ksq02xx5jrmqymnij90jml"))))
+                  "0c9l93vrsl6kzx8gg305dq8qkb2dr3s10fww7lh382911pdmsh7v"))))
       (build-system emacs-build-system)
       (propagated-inputs
        `(("emacs-evil" ,emacs-evil)))
@@ -5252,7 +5272,7 @@ distribution, primarily targeting Clojure users")
 (define-public emacs-orgalist
   (package
     (name "emacs-orgalist")
-    (version "1.8")
+    (version "1.9")
     (source
      (origin
        (method url-fetch)
@@ -5260,7 +5280,7 @@ distribution, primarily targeting Clojure users")
                            "orgalist-" version ".el"))
        (sha256
         (base32
-         "1wqwnmn08i0qkxm8b2iclvf6cydcn68h1p3h7r1kig2bdn5b8948"))))
+         "1rmmcyiiqkq54hn74nhzxzl4nvd902hv6gq341jwhrm7yiagffi6"))))
     (build-system emacs-build-system)
     (home-page "http://elpa.gnu.org/packages/orgalist.html")
     (synopsis "Manage Org-like lists in non-Org buffers")
@@ -5318,14 +5338,14 @@ passive voice.")
     (name "emacs-org")
     ;; emacs-org-contrib inherits from this package.  Please update its sha256
     ;; checksum as well.
-    (version "9.1.13")
+    (version "9.1.14")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://elpa.gnu.org/packages/org-"
                                   version ".tar"))
               (sha256
                (base32
-                "1vx0n32gvrgy2bl2b4pvxf00cywxwm57gi46f2b2zlrnmd5n85pr"))))
+                "17vd9hig26rqv90l6y92hc2i0x29g44lsdsp0xd4m53s8r3zdikz"))))
     (build-system emacs-build-system)
     (home-page "https://orgmode.org/")
     (synopsis "Outline-based notes management and organizer")
@@ -5507,14 +5527,15 @@ extensibility.")
 (define-public m17n-db
   (package
     (name "m17n-db")
-    (version "1.7.0")
+    (version "1.8.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "mirror://savannah/m17n/m17n-db-"
                            version ".tar.gz"))
        (sha256
-        (base32 "1w08hnsbknrcjlzp42c99bgwc9hzsnf5m4apdv0dacql2s09zfm2"))))
+        (base32
+         "0vfw7z9i2s9np6nmx1d4dlsywm044rkaqarn7akffmb6bf1j6zv5"))))
     (build-system gnu-build-system)
     (inputs
      `(("gettext" ,gettext-minimal)))
@@ -5541,14 +5562,15 @@ This package contains the library database.")
 (define-public m17n-lib
   (package
     (name "m17n-lib")
-    (version "1.7.0")
+    (version "1.8.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "mirror://savannah/m17n/m17n-lib-"
                            version ".tar.gz"))
        (sha256
-        (base32 "10yv730i25g1rpzv6q49m6xn4p8fjm7jdwvik2h70sn8w3hm7f4f"))))
+        (base32
+         "0jp61y09xqj10mclpip48qlfhniw8gwy8b28cbzxy8hq8pkwmfkq"))))
     (build-system gnu-build-system)
     (inputs
      `(("fribidi" ,fribidi)
@@ -5577,7 +5599,7 @@ This package contains the library runtime.")
 (define-public emacs-nginx-mode
   (package
     (name "emacs-nginx-mode")
-    (version "1.1.4")
+    (version "1.1.9")
     (source
      (origin
        (method url-fetch)
@@ -5587,7 +5609,7 @@ This package contains the library runtime.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "1lvkj07kq0jkskr2f61vqb5rlrbnaz9a76ikq40w6925i2r970rr"))))
+         "0bzyrj6zz1hm67bkhw23bam7qc869s3zg7m1rb1c3aa4n0aw90cq"))))
     (build-system emacs-build-system)
     (home-page "https://github.com/ajc/nginx-mode")
     (synopsis "Emacs major mode for editing nginx config files")
@@ -5792,7 +5814,7 @@ mode-line.")
 (define-public emacs-yasnippet
   (package
     (name "emacs-yasnippet")
-    (version "0.12.2")
+    (version "0.13.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/joaotavora/yasnippet/"
@@ -5800,7 +5822,7 @@ mode-line.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "01jabaz0g67bsziayrxgv74px55fx4nlrcl0csl8f1by2102pwc5"))
+                "12ls2x17agzbrj1xynjbmfa11igqxia4hj4fv6fpr66yci2r1plc"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -5907,8 +5929,20 @@ Yasnippet.")
                (base32
                 "01by0c4lqi2cw8xmbxkjw7m9x78zssm31sx4hdpw5j35s2951j0f"))))
     (build-system emacs-build-system)
+    (inputs
+     `(("recutils" ,recutils)))
     (propagated-inputs
      `(("emacs-helm" ,emacs-helm)))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'configure
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((recutils (assoc-ref inputs "recutils")))
+               ;; Specify the absolute file names of the various
+               ;; programs so that everything works out-of-the-box.
+               (substitute* "helm-system-packages-guix.el"
+                 (("recsel") (string-append recutils "/bin/recsel")))))))))
     (home-page "https://github.com/emacs-helm/helm-system-packages")
     (synopsis "Helm System Packages is an interface to your package manager")
     (description "List all available packages in Helm (with installed
@@ -6554,14 +6588,14 @@ which code derived from Kelvin H's org-page.")
 (define-public emacs-xelb
   (package
     (name "emacs-xelb")
-    (version "0.15")
+    (version "0.16")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://elpa.gnu.org/packages/xelb-"
                                   version ".tar"))
               (sha256
                (base32
-                "031rvgprsqhf344p9wsczr50vj2qcpwdmhxi80jdbrsm7wyxf3qz"))))
+                "03wsr1jr7f7zfd80h864rd4makwh4widdnj1kjv2xyjwdgap9rl8"))))
     (build-system emacs-build-system)
     ;; The following functions and variables needed by emacs-xelb are
     ;; not included in emacs-minimal:
@@ -6593,7 +6627,7 @@ It should enable you to implement low-level X11 applications.")
 (define-public emacs-exwm
   (package
     (name "emacs-exwm")
-    (version "0.19")
+    (version "0.20")
     (synopsis "Emacs X window manager")
     (source (origin
               (method url-fetch)
@@ -6601,8 +6635,7 @@ It should enable you to implement low-level X11 applications.")
                                   version ".tar"))
               (sha256
                (base32
-                "11xd2w4h3zdwkdxypvmcz8s7q72cn76lfr9js77jbizyj6b04lr0"))
-              (patches (search-patches "emacs-exwm-fix-fullscreen-issue.patch"))))
+                "0nhhzbkm0mkj7sd1dy2c19cmn56gyaj9nl8kgy86h4fp63hjaz04"))))
     (build-system emacs-build-system)
     (propagated-inputs
      `(("emacs-xelb" ,emacs-xelb)))
@@ -6931,9 +6964,9 @@ Emacs.")
 
 ;; Tests for ert-runner have a circular dependency with ecukes, and therefore
 ;; cannot be run
-(define-public ert-runner
+(define-public emacs-ert-runner
   (package
-    (name "ert-runner")
+    (name "emacs-ert-runner")
     (version "0.7.0")
     (source
      (origin
@@ -6961,8 +6994,8 @@ Emacs.")
                (substitute* "bin/ert-runner"
                  (("ERT_RUNNER=\"\\$\\(dirname \\$\\(dirname \\$0\\)\\)")
                   (string-append "ERT_RUNNER=\"" out
-                                 "/share/emacs/site-lisp/guix.d/"
-                                 ,name "-" ,version)))
+                                 "/share/emacs/site-lisp/guix.d/ert-runner-"
+                                 ,version)))
                (install-file "bin/ert-runner" (string-append out "/bin"))
                (wrap-program (string-append out "/bin/ert-runner")
                  (list "EMACSLOADPATH" ":" 'prefix
@@ -6976,6 +7009,9 @@ using ERT.  It assumes a certain test structure setup and can therefore make
 running tests easier.")
     (license license:gpl3+)))
 
+(define-public ert-runner
+  (deprecated-package "ert-runner" emacs-ert-runner))
+
 (define-public emacs-disable-mouse
   (package
     (name "emacs-disable-mouse")
@@ -7019,7 +7055,7 @@ running a customisable handler command (@code{ignore} by default). ")
     (native-inputs
      `(("emacs-dash" ,emacs-dash)
        ("emacs-shut-up" ,emacs-shut-up)
-       ("ert-runner" ,ert-runner)))
+       ("ert-runner" ,emacs-ert-runner)))
     (arguments
      `(#:tests? #t
        #:test-command '("ert-runner")))
@@ -7207,7 +7243,7 @@ or @code{treemacs}, but leveraging @code{Dired} to do the job of display.")
 (define-public emacs-which-key
   (package
     (name "emacs-which-key")
-    (version "3.0.2")
+    (version "3.3.0")
     (source
      (origin
        (method url-fetch)
@@ -7216,7 +7252,7 @@ or @code{treemacs}, but leveraging @code{Dired} to do the job of display.")
              version ".tar.gz"))
        (sha256
         (base32
-         "1xvd70cwq9n31f28viyjxmr3nn8l153gsy6scpszvgvjxkiikv24"))
+         "1lsj314111cp2hjjwnv3f46ws1za6bm39rgy3l19044xf6a68j5w"))
        (file-name (string-append name "-" version ".tar.gz"))))
     (build-system emacs-build-system)
     (arguments
@@ -7250,7 +7286,7 @@ settings).")
                 "1a4b0lsmwq84qfx51c5xy4fryhb1ysld4fhgw2vr37izf53379sb"))))
     (build-system emacs-build-system)
     (native-inputs
-     `(("ert-runner" ,ert-runner)))
+     `(("ert-runner" ,emacs-ert-runner)))
     (arguments
      `(#:tests? #t
        #:test-command '("ert-runner" "tests")))
@@ -7385,7 +7421,7 @@ created by @code{git format-patch}, from @code{magit}, @code{dired} and
 (define-public emacs-erc-hl-nicks
   (package
     (name "emacs-erc-hl-nicks")
-    (version "1.3.2")
+    (version "1.3.3")
     (source
      (origin
        (method url-fetch)
@@ -7394,7 +7430,7 @@ created by @code{git format-patch}, from @code{magit}, @code{dired} and
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "01svpl9bps5kx4y1wnymakxya2cznqmlynvqv2r500wpnbxczrbs"))))
+         "1a1r2kc3688g8c2ybkpwh88kgmnqhg3h3032g2yn4zr9m0n3vpkr"))))
     (build-system emacs-build-system)
     (synopsis "Nickname highlighting for Emacs ERC")
     (description "@code{erc-hl-nicks} highlights nicknames in ERC, an IRC
@@ -7506,7 +7542,7 @@ Idris.")
      `(("emacs-f" ,emacs-f)
        ("emacs-s" ,emacs-s)))
     (native-inputs
-     `(("ert-runner" ,ert-runner)))
+     `(("ert-runner" ,emacs-ert-runner)))
     (arguments
      `(#:tests? #t
        #:test-command '("ert-runner")))
@@ -7976,14 +8012,14 @@ supports multiple backends such as @code{vlc}, @code{mpg123},
 @code{afplay}.")
     (license license:gpl2+)))
 
-(define-public groovy-emacs-modes
+(define-public emacs-groovy-modes
   (package
-    (name "groovy-emacs-modes")
+    (name "emacs-groovy-modes")
     (version "2.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "https://github.com/Groovy-Emacs-Modes/" name
+                    "https://github.com/Groovy-Emacs-Modes/groovy-emacs-modes"
                     "/archive/" version ".tar.gz"))
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
@@ -8000,7 +8036,10 @@ Groovy source files, REPL integration with run-groovy and Grails project
 navigation with the grails mode.")
     (license license:gpl3+)))
 
-(define-public org-tree-slide
+(define-public groovy-emacs-modes
+  (deprecated-package "groovy-emacs-modes" emacs-groovy-modes))
+
+(define-public emacs-org-tree-slide
   (let ((commit "dff8f1a4a64c8dd0a1fde0b0131e2fe186747134")
         (revision "0"))
     (package
@@ -8394,7 +8433,7 @@ close, copy, cut, paste, undo, redo.")
 (define-public emacs-password-store
   (package
     (name "emacs-password-store")
-    (version "1.7.2")
+    (version "1.7.3")
     (source (origin
               (method url-fetch)
               (uri
@@ -8402,7 +8441,7 @@ close, copy, cut, paste, undo, redo.")
                               "password-store-" version ".tar.xz"))
               (sha256
                (base32
-                "1sl0d7nc85c6c2bmmmyb8rpmn47vhkj831l153mjlkawjvhwas27"))))
+                "1x53k5dn3cdmvy8m4fqdld4hji5n676ksl0ql4armkmsds26av1b"))))
     (build-system emacs-build-system)
     (arguments
      `(#:phases
@@ -9697,7 +9736,7 @@ documentation.")
 (define-public emacs-hy-mode
   (package
     (name "emacs-hy-mode")
-    (version "1.0.2")
+    (version "1.0.3")
     (source
      (origin
        (method url-fetch)
@@ -9706,7 +9745,7 @@ documentation.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "0sbga36zkyhzrzcczsyjzll7b9qsa215pnlw51m4li2irm23jh17"))))
+         "0b4pvbr2hf77bq2vsyfsv653q0dab7qzq85wc7kdziw7687jdf2z"))))
     (build-system emacs-build-system)
     (propagated-inputs
      `(("emacs-dash" ,emacs-dash)
@@ -10094,7 +10133,7 @@ time is being spent during Emacs startup in order to optimize startup time.")
 
 (define-public emacs-emms-player-simple-mpv
   ;; A new mpv backend is included in Emms from 5.0.
-  (deprecated-package "emacs-emms-player-simple-mpv" emms))
+  (deprecated-package "emacs-emms-player-simple-mpv" emacs-emms))
 
 (define-public emacs-magit-org-todos-el
   (let ((commit "df206287737b9671f2e36ae7b1474ebbe9940d2a"))
@@ -10112,7 +10151,7 @@ time is being spent during Emacs startup in order to optimize startup time.")
           (base32
            "0kdp7k7jnnrkhsg0xh1c3h7iz0vgi120gf5xwl1hxy61avivnxrn"))))
       (propagated-inputs
-       `(("magit" ,magit)))
+       `(("magit" ,emacs-magit)))
       (build-system emacs-build-system)
       (home-page "https://github.com/danielma/magit-org-todos.el")
       (synopsis "Get todo.org into Emacs Magit status")
@@ -10383,8 +10422,8 @@ perform regression test for packages that provide font-lock rules.")
       (license license:gpl3+))))
 
 (define-public emacs-racket-mode
-  (let ((commit "92c33487f6c707880ac3f6169e7ea65ddffd1463")
-        (revision "1"))
+  (let ((commit "b977873e6128f8399432dcd60cc39f6a6f803d9c")
+        (revision "2"))
     (package
       (name "emacs-racket-mode")
       (version (string-append "0.0.2" "-" revision "."
@@ -10398,7 +10437,7 @@ perform regression test for packages that provide font-lock rules.")
          (file-name (string-append name "-" version "-checkout"))
          (sha256
           (base32
-           "19q6ym10gj2xdzzcgh3wdbq1xv8cv7nlrhv2b0bjvvdjzhiki472"))))
+           "0vp4bbbplqvmnhjpl6ajrlydmrhqzil56cfbs18m5c5fddx0zlh7"))))
       (build-system emacs-build-system)
       (arguments
        `(#:include '("\\.el$" "\\.rkt$")))
@@ -10951,7 +10990,7 @@ through the symbol: @command{this-fn}.")
      `(("emacs-el-mock" ,emacs-el-mock)
        ("emacs-noflet" ,emacs-noflet)
        ("emacs-undercover" ,emacs-undercover)
-       ("ert-runner" ,ert-runner)))
+       ("ert-runner" ,emacs-ert-runner)))
     (propagated-inputs
      `(("emacs-f" ,emacs-f)
        ("emacs-popup" ,emacs-popup)))
@@ -11138,7 +11177,7 @@ Org-mode file, and citations of Zotero items in Pandoc Markdown files.")
       (build-system emacs-build-system)
       (propagated-inputs
        `(("emacs-evil" ,emacs-evil)
-         ("magit" ,magit)))
+         ("magit" ,emacs-magit)))
       (home-page
        "https://github.com/emacs-evil/evil-magit")
       (synopsis "Evil-based key bindings for Magit")
@@ -11317,27 +11356,25 @@ the GIF result.")
       (license license:gpl3+))))
 
 (define-public emacs-google-translate
-  (let ((commit "d8b84a8359fcc697114d1298840e9a45b111c974"))
-    (package
-      (name "emacs-google-translate")
-      (version (git-version "0.11.14" "1" commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/atykhonov/google-translate")
-               (commit commit)))
-         (file-name (string-append name "-" version "-checkout"))
-         (sha256
-          (base32
-           "1qs4hcg1i2m487z50nnwgs0sa2xj4lpgizbrvi2yda0mf3m75fgc"))))
-      (build-system emacs-build-system)
-      (home-page "https://github.com/atykhonov/google-translate")
-      (synopsis "Emacs interface to Google Translate")
-      (description
-       "This packages provides an Emacs interface to the Google Translate
+  (package
+    (name "emacs-google-translate")
+    (version "0.11.15")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/atykhonov/google-translate/"
+                           "archive/v" version ".tar.gz"))
+       (file-name (string-append name "-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1zxvfagbaf5mxi528mz33c8vxdk86wj0xx5y2jfy97wi8dzrwn3g"))))
+    (build-system emacs-build-system)
+    (home-page "https://github.com/atykhonov/google-translate")
+    (synopsis "Emacs interface to Google Translate")
+    (description
+     "This packages provides an Emacs interface to the Google Translate
 on-line service.")
-      (license license:gpl3+))))
+    (license license:gpl3+)))
 
 (define-public emacs-helm-company
   (let ((commit "acc9c7901e094c1591327a0db1ec7a439f67a84d"))
@@ -11411,7 +11448,7 @@ you searched for and execute it, or view its documentation.")
       (build-system emacs-build-system)
       (propagated-inputs
        `(("emacs-helm" ,emacs-helm)
-         ("emacs-emms" ,emms)))
+         ("emacs-emms" ,emacs-emms)))
       (home-page
        "https://github.com/emacs-helm/helm-emms")
       (synopsis "Emms for Helm")
@@ -11466,7 +11503,7 @@ See @code{helm-exwm-switch-browser} for an example.")
       (build-system emacs-build-system)
       (propagated-inputs
        `(("emacs-dash" ,emacs-dash)
-         ("emacs-flycheck" ,flycheck)
+         ("emacs-flycheck" ,emacs-flycheck)
          ("emacs-helm" ,emacs-helm)))
       (home-page "https://github.com/yasuyk/helm-flycheck")
       (synopsis "Show Flycheck errors with Helm")
@@ -11705,8 +11742,8 @@ file.")
       (synopsis
        "Show a complete thread in a single buffer")
       (description
-       "This package offers an alternate view to mu4e e-mail display.  It
-shows all e-mails of a thread in a single view, where each correspondant has
+       "This package offers an alternate view to mu4e's e-mail display.  It
+shows all e-mails of a thread in a single view, where each correspondent has
 their own face.  Threads can be displayed linearly (in which case e-mails are
 displayed in chronological order) or as an Org document where the node tree
 maps the thread tree.")
@@ -12028,7 +12065,7 @@ buffers – other modes on the TODO list).
        ("emacs-dash" ,emacs-dash)
        ("emacs-f" ,emacs-f)
        ("emacs-hl-todo" ,emacs-hl-todo)
-       ("magit" ,magit)
+       ("magit" ,emacs-magit)
        ("emacs-pcre2el" ,emacs-pcre2el)
        ("emacs-s" ,emacs-s)))
     (home-page "https://github.com/alphapapa/magit-todos")
@@ -12197,3 +12234,155 @@ wrapper around all Imagemagick commands with descriptions, autocompletion (for
 some commands) and hints displayed in prompt using @command{eimp.el} to
 execute its commands and resize images.")
       (license license:gpl3+))))
+
+(define-public emacs-synosaurus
+  (let ((commit "8bf95b935976ec0a1964cf175ed57cc5f6f93bdb"))
+    (package
+      (name "emacs-synosaurus")
+      (version (git-version "0.1.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/hpdeifel/synosaurus")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32
+           "15by9jccab6kyplxa6k0glzaivxkqdigl33gl2qi2cvy6f2q7gva"))))
+      (build-system emacs-build-system)
+      (propagated-inputs
+       `(("wordnet" ,wordnet)))
+      (arguments
+       `(#:phases
+         (modify-phases %standard-phases
+           (add-after 'unpack 'configure
+             (lambda* (#:key inputs outputs #:allow-other-keys)
+               (let ((wn (assoc-ref inputs "wordnet")))
+                 ;; .el is read-only in git.
+                 (chmod "synosaurus-wordnet.el" #o644)
+                 ;; Specify the absolute file names of the various
+                 ;; programs so that everything works out-of-the-box.
+                 (emacs-substitute-variables
+                     "synosaurus-wordnet.el"
+                   ("wordnet-command"
+                    (string-append wn "/bin/wn")))))))))
+      (home-page "https://github.com/hpdeifel/synosaurus")
+      (synopsis "Extensible thesaurus mode for Emacs")
+      (description "Synosaurus is a thesaurus fontend for Emacs with pluggable
+backends, including the @command{wordnet} offline backend.")
+      (license license:gpl3+))))
+
+(define-public emacs-all-the-icons
+  (package
+    (name "emacs-all-the-icons")
+    (version "3.2.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/domtronn/all-the-icons.el.git")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "1sdl33117lccznj38021lwcdnpi9nxmym295q6y460y4dm4lx0jn"))))
+    (build-system emacs-build-system)
+    (arguments
+     `(#:include '("\\.el$" "^data/" "^fonts/")
+       ;; Compiling "test/" fails with "Symbol’s value as variable is void:
+       ;; all-the-icons--root-code".  Ignoring tests.
+       #:exclude '("^test/")
+       #:tests? #f))
+    (propagated-inputs
+     `(("f" ,emacs-f)
+       ("memoize" ,emacs-memoize)))
+    (home-page "https://github.com/domtronn/all-the-icons.el")
+    (synopsis "Collect icon fonts and propertize them within Emacs")
+    (description "All-the-icons is a utility package to collect various icon
+fonts and propertize them within Emacs.  Icon fonts allow you to propertize
+and format icons the same way you would normal text.  This enables things such
+as better scaling of and anti aliasing of the icons.")
+    ;; Package is released under Expat license.  Elisp files are licensed
+    ;; under GPL3+.  Fonts come with various licenses: Expat for
+    ;; "all-the-icons.ttf" and "file-icons.ttf", Apache License 2.0 for
+    ;; "material-design-icons.ttf", and SIL OFL 1.1 for "fontawesome.ttf",
+    ;; "ocitcons.ttf" and "weathericons.ttf".
+    (license
+     (list license:expat license:gpl3+ license:silofl1.1 license:asl2.0))))
+
+(define-public emacs-powerline
+  (package
+    (name "emacs-powerline")
+    (version "2.4")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/milkypostman/powerline.git")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "1hp3xp18943n0rlggz55150020ivw8gvi1vyxkr4z8xhpwq4gaar"))))
+    (build-system emacs-build-system)
+    (home-page "https://github.com/milkypostman/powerline/")
+    (synopsis "Mode-line plugin for Emacs")
+    (description "Powerline is a utility plugin which allows you to create
+a better-looking, more functional Emacs mode-line.  A collection of predefined
+themes comes with the package.")
+    (license license:gpl3+)))
+
+(define-public emacs-spaceline
+  (package
+    (name "emacs-spaceline")
+    (version "2.0.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/TheBB/spaceline.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "1q8r95zfrh0vxna5ml2pq9b9f66clfqcl4d2qy2aizkvzyxg6skl"))))
+    (build-system emacs-build-system)
+    (propagated-inputs
+     `(("dash" ,emacs-dash)
+       ("powerline" ,emacs-powerline)
+       ("s" ,emacs-s)))
+    (home-page "https://github.com/TheBB/spaceline")
+    (synopsis "Powerline theme from Spacemacs")
+    (description "Spaceline provides Spacemacs' mode-line theme.
+This package provides features for three kinds of users.
+
+@itemize
+@item You just want to use the Spacemacs mode-line theme and forget about it.
+@item You want to use something similar to the Spacemacs mode-line theme, but
+with a handful of easy tweaks.
+@item You want an easy-to-use library for building your own mode-line from
+scratch, and you think the Spacemacs theme looks good.
+@end itemize")
+    (license license:gpl3+)))
+
+(define-public emacs-column-marker
+  (package
+    (name "emacs-column-marker")
+    (version "9")
+    (source
+     (origin
+       (method url-fetch)
+       (uri "https://www.emacswiki.org/emacs/download/column-marker.el")
+       (sha256 (base32 "05bv198zhqw5hqq6cr11mhz02dpca74hhp1ycwq369m0yb2naxy9"))))
+    (build-system emacs-build-system)
+    (home-page "https://www.emacswiki.org/emacs/ColumnMarker")
+    (synopsis "Emacs mode for highlighting columns")
+    (description
+     "With @code{column-marker.el} you can highlight any number of text columns.
+Three such highlight column markers are provided by default.  This is
+especially useful for languages like COBOL or Fortran where certain columns
+have special meaning.  It is also handy for aligning text across long vertical
+distances.  Multi-column characters, such as @kbd{TAB} are treated
+correctly.")
+    (license license:gpl2+)))
diff --git a/gnu/packages/embedded.scm b/gnu/packages/embedded.scm
index 0174224616..38c76cd737 100644
--- a/gnu/packages/embedded.scm
+++ b/gnu/packages/embedded.scm
@@ -4,6 +4,7 @@
 ;;; Copyright © 2016 David Craven <david@craven.ch>
 ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -27,6 +28,7 @@
   #:use-module (guix svn-download)
   #:use-module (guix git-download)
   #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system trivial)
   #:use-module (guix build utils)
@@ -1104,3 +1106,40 @@ and displaying decoded target responses.
 @end enumerate")
     (home-page "https://www.freecalypso.org/")
     (license license:public-domain)))
+
+(define-public stlink
+  (package
+    (name "stlink")
+    (version "1.5.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/texane/stlink/archive/v"
+                           version ".tar.gz"))
+       (file-name (string-append name "-" version ".tar.gz"))
+       (sha256
+        (base32
+         "01z1cz1a5xbbhd163qrqcgp4bi1k145pb80jmwdz50g7sfzmy570"))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:tests? #f                      ;no tests
+       #:configure-flags
+       (let* ((out (assoc-ref %outputs "out"))
+              (etc (in-vicinity out "etc"))
+              (modprobe (in-vicinity etc "modprobe.d"))
+              (udev-rules (in-vicinity etc "udev/rules.d")))
+         (list (string-append "-DSTLINK_UDEV_RULES_DIR=" udev-rules)
+               (string-append "-DSTLINK_MODPROBED_DIR=" modprobe)))))
+    (inputs
+     `(("libusb" ,libusb)))
+    (synopsis "Programmer for STM32 Discovery boards")
+    (description "This package provides a firmware programmer for the STM32
+Discovery boards.  It supports two versions of the chip: ST-LINK/V1 (on
+STM32VL discovery kits) and ST-LINK/V2 (on STM32L discovery and later kits).
+Two different transport layers are used: ST-LINK/V1 uses SCSI passthru
+commands over USB, and ST-LINK/V2 and ST-LINK/V2-1 (seen on Nucleo boards) use
+raw USB commands.")
+    (home-page "https://github.com/texane/stlink")
+    ;; The flashloaders/stm32l0x.s and flashloaders/stm32lx.s source files are
+    ;; licensed under the GPLv2+.
+    (license (list license:bsd-3 license:gpl2+))))
diff --git a/gnu/packages/emulators.scm b/gnu/packages/emulators.scm
index 782bff5b18..438e9df1fc 100644
--- a/gnu/packages/emulators.scm
+++ b/gnu/packages/emulators.scm
@@ -1055,15 +1055,16 @@ emulation community.  It provides highly accurate emulation.")
 (define-public retroarch
   (package
     (name "retroarch")
-    (version "1.7.4")
+    (version "1.7.5")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append "https://github.com/libretro/RetroArch/archive/v"
-                           version ".tar.gz"))
-       (file-name (string-append name "-" version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/libretro/RetroArch.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "0h6y2hpjg4b470jvn9ghwp0k3a527sbb6xhia17frlm9w9v5028w"))))
+        (base32 "1jfpgl34jjxn3dvxd1kd564swkw7v98hnn562v998b7vllz3dxdm"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f                      ; no tests
@@ -1184,7 +1185,7 @@ play them on systems for which they were never designed!")
 (define-public mame
   (package
     (name "mame")
-    (version "0.201")
+    (version "0.202")
     (source
      (origin
        (method git-fetch)
@@ -1194,7 +1195,7 @@ play them on systems for which they were never designed!")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "00whiig4ld3d4fkl34q48vlf28ygvvp5g7fp0rb5n31ymhl4kajk"))
+         "1v9gm124p65nbj678gfkcvwphp9qc15ky2p12ca6g3rllma94di5"))
        (modules '((guix build utils)))
        (snippet
         ;; Remove bundled libraries.
diff --git a/gnu/packages/enchant.scm b/gnu/packages/enchant.scm
index 8b2796d0e2..0392a709e2 100644
--- a/gnu/packages/enchant.scm
+++ b/gnu/packages/enchant.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2014 Marek Benc <merkur32@gmail.com>
+;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -19,34 +20,41 @@
 (define-module (gnu packages enchant)
   #:use-module (gnu packages)
   #:use-module (gnu packages aspell)
+  #:use-module (gnu packages check)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages pkg-config)
   #:use-module (guix packages)
   #:use-module (guix download)
   #:use-module (guix build-system gnu)
-  #:use-module (guix licenses))
+  #:use-module (guix licenses)
+  #:use-module (srfi srfi-1))
 
 (define-public enchant
   (package
     (name "enchant")
-    (version "1.6.0")
-    (source
-      (origin
-        (method url-fetch)
-        (uri
-          (string-append "http://www.abisource.com/downloads/" name "/" version
-                         "/" name "-" version ".tar.gz"))
-        (sha256
-          (base32 "0zq9yw1xzk8k9s6x83n1f9srzcwdavzazn3haln4nhp9wxxrxb1g"))))
-
+    (version "2.2.3")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/AbiWord/enchant/releases"
+                                  "/download/v" version "/enchant-"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "0v87p1ls0gym95qirijpclk650sjbkcjjl6ssk059zswcwaykn5b"))))
     (build-system gnu-build-system)
+    (arguments
+     '(#:configure-flags '("--disable-static"
+                           ;; Tests require a relocatable build.
+                           "--enable-relocatable")))
     (inputs
-      `(("aspell" ,aspell)    ;; Currently, the only supported backend in Guix
-        ("glib" ,glib)))      ;; is aspell. (This information might be old)
+     `(("aspell" ,aspell)))   ;; Currently, the only supported backend in Guix
+    (propagated-inputs        ;; is aspell. (This information might be old)
+     ;; Required by enchant.pc.
+     `(("glib" ,glib)))
     (native-inputs
      `(("glib:bin" ,glib "bin")
-       ("pkg-config" ,pkg-config)))
-
+       ("pkg-config" ,pkg-config)
+       ("unittest-cpp" ,unittest-cpp)))
     (synopsis "Multi-backend spell-checking library wrapper")
     (description
       "On the surface, Enchant appears to be a generic spell checking library.
@@ -57,5 +65,23 @@ Enchant steps in to provide uniformity and conformity on top of these libraries,
 and implement certain features that may be lacking in any individual provider
 library.  Everything should \"just work\" for any and every definition of \"just
 working\".")
-    (home-page "http://www.abisource.com/projects/enchant")
+    (home-page "https://abiword.github.io/enchant/")
     (license lgpl2.1+)))
+
+;; Some packages are not ready for the 2.x API yet, so we keep this version
+;; around.  The library and executables of Enchant 2 have been designed not to
+;; conflict with 1.x, so it's OK if both end up in the same profile.
+(define-public enchant-1.6
+  (package
+    (inherit enchant)
+    (version "1.6.0")
+    (arguments '(#:configure-flags '("--disable-static")))
+    (native-inputs (alist-delete "unittest-cpp"
+                                 (package-native-inputs enchant)))
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://www.abisource.com/downloads/enchant/"
+                                  version "/enchant-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0zq9yw1xzk8k9s6x83n1f9srzcwdavzazn3haln4nhp9wxxrxb1g"))))))
diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm
index ee524ec78e..0080356494 100644
--- a/gnu/packages/engineering.scm
+++ b/gnu/packages/engineering.scm
@@ -823,6 +823,30 @@ electrical diagrams), gerbview (viewing Gerber files) and others.")
 render model libraries.")
       (license license:lgpl2.0+))))
 
+(define-public kicad-symbols
+  (package
+    (name "kicad-symbols")
+    (version "5.0.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/KiCad/kicad-symbols.git")
+                    (commit version)))
+              (file-name (string-append "kicad-symbols-" version "-checkout"))
+              (sha256
+               (base32
+                "18z5vpdq7hy2mpvm5vz1dz3ra3a5iybavvlzi8q2bmmdb6gsvf64"))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:tests? #f)) ; No tests exist
+    (home-page "http://kicad-pcb.org/")
+    (synopsis "Official KiCad schematic symbol libraries for KiCad 5")
+    (description "This package contains the official KiCad schematic symbol
+libraries for KiCad 5.")
+    ;; TODO: Exception: "To the extent that the creation of electronic designs that use 'Licensed Material' can be considered to be 'Adapted Material', then the copyright holder waives article 3 of the license with respect to these designs and any generated files which use data provided as part of the 'Licensed Material'."
+    ;; See <https://github.com/KiCad/kicad-symbols/blob/master/LICENSE.md>.
+    (license license:cc-by-sa4.0)))
+
 (define-public linsmith
   (package
     (name "linsmith")
diff --git a/gnu/packages/enlightenment.scm b/gnu/packages/enlightenment.scm
index 45dc1dbbeb..1a0ebba304 100644
--- a/gnu/packages/enlightenment.scm
+++ b/gnu/packages/enlightenment.scm
@@ -4,6 +4,7 @@
 ;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017 Nils Gillmann <ng0@n0.is>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Timo Eisenmann <eisenmann@fn.de>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -268,13 +269,23 @@ Libraries with some extra bells and whistles.")
          (add-before 'configure 'set-system-actions
            (lambda* (#:key inputs #:allow-other-keys)
              (let ((xkeyboard (assoc-ref inputs "xkeyboard-config"))
-                   (utils     (assoc-ref inputs "util-linux")))
+                   (setxkbmap (assoc-ref inputs "setxkbmap"))
+                   (utils     (assoc-ref inputs "util-linux"))
+                   (libc      (assoc-ref inputs "libc")))
                ;; We need to patch the path to 'base.lst' to be able
                ;; to switch the keyboard layout in E.
-               (substitute* "src/modules/xkbswitch/e_mod_parse.c"
+               (substitute* (list "src/modules/xkbswitch/e_mod_parse.c"
+                                  "src/modules/wizard/page_011.c")
                  (("/usr/share/X11/xkb/rules/xorg.lst")
                   (string-append xkeyboard
                                  "/share/X11/xkb/rules/base.lst")))
+               (substitute* "src/bin/e_xkb.c"
+                 (("\"setxkbmap \"")
+                  (string-append "\"" setxkbmap "/bin/setxkbmap \"")))
+               (substitute* (list "src/bin/e_intl.c"
+                                  "src/modules/conf_intl/e_int_config_intl.c"
+                                  "src/modules/wizard/page_010.c")
+                 (("locale -a") (string-append libc "/bin/locale -a")))
                (substitute* "src/modules/everything/evry_plug_apps.c"
                  (("/usr/bin/") ""))
                (substitute* "configure"
@@ -298,6 +309,7 @@ Libraries with some extra bells and whistles.")
        ("libxcb" ,libxcb)
        ("libxext" ,libxext)
        ("linux-pam" ,linux-pam)
+       ("setxkbmap" ,setxkbmap)
        ("xcb-util-keysyms" ,xcb-util-keysyms)
        ("xkeyboard-config" ,xkeyboard-config)))
     (home-page "https://www.enlightenment.org/about-enlightenment")
@@ -452,19 +464,22 @@ and in creating applications based on the Enlightenment Foundation Library suite
     (home-page "http://smhouston.us/ephoto/")
     (synopsis "EFL image viewer/editor/manipulator/slideshow creator")
     (description "Ephoto is an image viewer and editor written using the
-@dfn{Enlightenment Foundation Libraries} (EFL).  It focuses on simplicity and ease
-of use, while taking advantage of the speed and small footprint the EFL provide.
+@dfn{Enlightenment Foundation Libraries} (EFL).  It focuses on simplicity and
+ease of use, while taking advantage of the speed and small footprint the EFL
+provide.
 
 Ephoto’s features include:
 @enumerate
-@item Browsing the filesystem and displaying images in an easy to use grid view.
+@item Browsing the file system and displaying images in an easy-to-use grid view.
 @item Browsing images in a single image view format.
 @item Viewing images in a slideshow.
 @item Editing your image with features such as cropping, auto enhance,
 blurring, sharpening, brightness/contrast/gamma adjustments, hue/saturation/value
 adjustments, and color level adjustment.
-@item Applying artistic filters to your image such as black and white and old photo.
-@item Drag And Drop along with file operations to easy maintain your photo directories.
+@item Applying artistic filters to your image such as black and white and old
+photo.
+@item Drag And Drop along with file operations to easily maintain your photo
+directories.
 @end enumerate\n")
     (license (list
                license:bsd-2 ; Ephoto's thumbnailing code
diff --git a/gnu/packages/fabric-management.scm b/gnu/packages/fabric-management.scm
index 76ef9eef2e..ff6ad898b1 100644
--- a/gnu/packages/fabric-management.scm
+++ b/gnu/packages/fabric-management.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2017 Dave Love <fx@gnu.org>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -41,33 +42,38 @@
 (define-public opensm
   (package
     (name "opensm")
-    (version "3.3.20")
+    (version "3.3.21")
     (source
      (origin
        (method url-fetch)
        (uri
-        (string-append "https://www.openfabrics.org/downloads/management/opensm-"
-                       version ".tar.gz"))
-       (sha256 (base32 "162sg1w7kgy8ayl8a4dcbrfacmnfy2lr9a2yjyq0k65rmd378zg1"))))
+        (string-append "https://github.com/linux-rdma/opensm/releases/download/"
+                       version "/opensm-" version ".tar.gz"))
+       (sha256
+        (base32 "0j4vp118w1l47vs4had46ynybklyacxjlya0r15jg0y01l4j9l2h"))))
     (build-system gnu-build-system)
     (native-inputs
-     `(("flex" ,flex)
-       ("bison" ,bison)))
+     `(("bison" ,bison)
+       ("flex" ,flex)
+
+       ;; The 3.3.21 'release' tarball isn't properly bootstrapped.
+       ("autoconf" ,autoconf)
+       ("automake" ,automake)
+       ("libtool" ,libtool)))
     (inputs
      `(("rdma-core" ,rdma-core)))
     (arguments
      `(#:configure-flags '("--disable-static")
        #:phases
        (modify-phases %standard-phases
-         (add-after 'install 'doc
+         (add-after 'install 'install-doc
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((base (assoc-ref outputs "out"))
                     (doc  (string-append base "/share/doc/"
                                          ,name "-" ,version)))
                (for-each (lambda (file)
                            (install-file file doc))
-                         (append (list "AUTHORS" "COPYING" "ChangeLog")
-                                 (find-files "doc")))
+                         (find-files "doc"))
                #t))))))
     (home-page "https://www.openfabrics.org/")
     (synopsis "OpenIB InfiniBand Subnet Manager and management utilities")
diff --git a/gnu/packages/fcitx.scm b/gnu/packages/fcitx.scm
index bcd5f12dd1..b05d9b7146 100644
--- a/gnu/packages/fcitx.scm
+++ b/gnu/packages/fcitx.scm
@@ -75,7 +75,7 @@
        ("pkg-config" ,pkg-config)))
     (inputs
      `(("dbus"             ,dbus)
-       ("enchant"          ,enchant)
+       ("enchant"          ,enchant-1.6)
        ("gettext"          ,gettext-minimal)
        ("gtk2"             ,gtk+-2)
        ("gtk3"             ,gtk+)
diff --git a/gnu/packages/file-systems.scm b/gnu/packages/file-systems.scm
index 3c9d7d49c1..b195019866 100644
--- a/gnu/packages/file-systems.scm
+++ b/gnu/packages/file-systems.scm
@@ -107,7 +107,7 @@ single file can be mounted.")
 (define-public disorderfs
   (package
     (name "disorderfs")
-    (version "0.5.3")
+    (version "0.5.4")
     (source
      (origin
        (method git-fetch)
@@ -117,7 +117,7 @@ single file can be mounted.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "1nmhfvxpvz3xsfxl9wqnh6r2l5m7hjq6n0vpblsl5xdcvwaqcf50"))))
+         "1mw4ix9h17ikki8p2rxdvzp87rcm1c7by5lvfn5gxlxr7hlj9f8g"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
diff --git a/gnu/packages/fonts.scm b/gnu/packages/fonts.scm
index 218b04baa1..1195695d7a 100644
--- a/gnu/packages/fonts.scm
+++ b/gnu/packages/fonts.scm
@@ -1210,7 +1210,7 @@ ExtraLight, Light, Book, Medium, Semibold, Bold & ExtraBold")
 (define-public font-culmus
   (package
     (name "font-culmus")
-    (version "0.132")
+    (version "0.133")
     (source
      (origin
        (method url-fetch)
@@ -1219,7 +1219,7 @@ ExtraLight, Light, Book, Medium, Semibold, Bold & ExtraBold")
                            version ".tar.gz"))
        (sha256
         (base32
-         "1djxalm26r7bcq33ckmfa15xfs6pmqzvcl64d5lqa1dl01bl4j4z"))))
+         "02akysgsqhi15cck54xcacm16q5raf4l7shgb8fnj7xr3c1pbfyp"))))
     (build-system font-build-system)
     (arguments
      `(#:phases
@@ -1302,3 +1302,53 @@ Kannada, Malayalam, Manipuri, Oriya, Punjabi, Tamil and Telugu scripts.")
      "Inria Sans and Inria Serif are the two members of a type family designed
 for Inria, a public research institute in computer science and mathematics.")
     (license license:silofl1.1)))
+
+(define-public font-sil-gentium
+  (package
+    (name "font-sil-gentium")
+    (version "5.000")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://software.sil.org/downloads/r/gentium/GentiumPlus-"
+                    version ".zip"))
+              (sha256
+               (base32
+                "0m7189870hha217n1vgpmf89mwggrxkh679ffi1lxpnjggqi2n9k"))))
+    ;; Note: The zip file provides TTF files only, but the developer release,
+    ;; which contains additional files, has a 'SOURCES.txt' file that says
+    ;; that "the primary source files for the fonts are the fonts themselves".
+    ;; Thus it looks like the TTF can be considered source.
+    (build-system font-build-system)
+    (synopsis "Serif font for the Cyrillic, Greek, and Latin alphabets")
+    (description
+     "Gentium is a typeface family designed to enable the diverse ethnic
+groups around the world who use the Latin, Cyrillic and Greek scripts to
+produce readable, high-quality publications.  The font comes with regular and
+italics shapes.  This package provides only TrueType files (TTF).")
+    (home-page "https://software.sil.org/gentium/")
+    (license license:silofl1.1)))
+
+(define-public font-sil-charis
+  (package
+    (name "font-sil-charis")
+    (version "5.000")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://software.sil.org/downloads/r/charis/CharisSIL-"
+                    version ".zip"))
+              (sha256
+               (base32
+                "1zcvw37f1a7gkml3yfm6hxh93844llm7xj4w52600qq3ndrm8gjy"))))
+    ;; As for Gentium (see above), the TTF files are considered source.
+    (build-system font-build-system)
+    (synopsis "Serif font for the Cyrillic and Latin alphabets")
+    (description
+     "Charis SIL is a Unicode-based font family that supports the wide range
+of languages that use the Latin and Cyrillic scripts.  It is specially
+designed to make long texts pleasant and easy to read, even in less than ideal
+reproduction and display environments.  This package provides only TrueType
+files (TTF).")
+    (home-page "https://software.sil.org/charis/")
+    (license license:silofl1.1)))
diff --git a/gnu/packages/fontutils.scm b/gnu/packages/fontutils.scm
index 2ea4ff049e..2ff42945d7 100644
--- a/gnu/packages/fontutils.scm
+++ b/gnu/packages/fontutils.scm
@@ -8,6 +8,7 @@
 ;;; Copyright © 2017 Nils Gillmann <ng0@n0.is>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2018 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -194,6 +195,58 @@ TTF (TrueType/OpenType Font) files.")
     (license license:bsd-2)
     (home-page "https://github.com/wget/ttf2eot")))
 
+(define-public ttf2pt1
+  (package
+    (name "ttf2pt1")
+    (version "3.4.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://sourceforge/ttf2pt1/ttf2pt1/"
+                                  version "/ttf2pt1-" version ".tgz"))
+              (sha256
+               (base32
+                "1l718n4k4widx49xz7qrj4mybzb8q67kp2jw7f47604ips4654mf"))
+              (modules '((guix build utils)))
+              (snippet
+               '(begin
+                  ;; Remove trailing backslashes in the sed expression of the
+                  ;; 'install' rule since sed would otherwise fail.
+                  (substitute* "Makefile"
+                    (("\\|;\\\\[[:space:]]*$") "|; "))
+                  #t))))
+    (build-system gnu-build-system)
+    (arguments
+     '(#:tests? #f                                ;no tests
+       #:phases (modify-phases %standard-phases
+                  (replace 'configure
+                    (lambda* (#:key outputs #:allow-other-keys)
+                      (let ((out (assoc-ref outputs "out")))
+                        (substitute* "Makefile"
+                          (("INSTDIR =.*")
+                           (string-append "INSTDIR = " out "\n"))
+                          (("OWNER = .*")
+                           "OWNER = `id -un`\n")
+                          (("GROUP = .*")
+                           "GROUP = `id -g`\n"))
+                        #t)))
+                  (replace 'build
+                    (lambda _
+                      (invoke "make" "-j"
+                              (number->string (parallel-job-count))
+                              "all" "CC=gcc"))))))
+    (inputs `(("perl" ,perl)))
+    (synopsis "Convert TrueType fonts to Postscript Type 1")
+    (description
+     "TTF2PT1 provides tools to convert most TrueType fonts (or other formats
+supported by the FreeType library) to an Adobe Type 1 @file{.pfa} or
+@file{.pfb} file.  Another use is as a hinting engine: feed it an unhinted or
+poorly hinted Adobe Type 1 font through the FreeType library and get it back
+with freshly generated hints.  The files produced by default are in
+human-readable form, which further needs to be encoded with t1utilities to
+work with most software requiring Type 1 fonts.")
+    (home-page "http://ttf2pt1.sourceforge.net/")
+    (license license:bsd-3)))
+
 (define-public woff2
   (let ((commit "4e698b8c6c5e070d53c340db9ddf160e21070ede")
         (revision "1"))
diff --git a/gnu/packages/freedesktop.scm b/gnu/packages/freedesktop.scm
index c6bccd452d..8853ce1ceb 100644
--- a/gnu/packages/freedesktop.scm
+++ b/gnu/packages/freedesktop.scm
@@ -148,14 +148,14 @@ freedesktop.org project.")
 (define-public libinput
   (package
     (name "libinput")
-    (version "1.12.0")
+    (version "1.12.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://freedesktop.org/software/libinput/"
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1901wxh9k8kz3krfmvacf8xa8r4idfyisw8d80a2ql0bxiw2pb0m"))))
+                "14l6bvgq76ls63qc9c448r435q9xiig0rv8ilx6rnjvlgg64h32p"))))
     (build-system meson-build-system)
     (arguments
      `(#:configure-flags '("-Ddocumentation=false")))
@@ -349,7 +349,7 @@ of a the system to know what users are logged in, and where.")
 (define-public packagekit
   (package
     (name "packagekit")
-    (version "1.1.10")
+    (version "1.1.11")
     (source (origin
              (method url-fetch)
              (uri (string-append
@@ -358,7 +358,7 @@ of a the system to know what users are logged in, and where.")
                    "PackageKit-" version ".tar.xz"))
              (sha256
               (base32
-               "1msfmb22cm4s3l6vsbr86b8s0v897sy6gcga3qg87z7640a0di2b"))))
+               "0fi6wn54y03zh5sn92nmmxkh4cd8yn44cyk0l8phw60ivfwmkh1q"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f
diff --git a/gnu/packages/ftp.scm b/gnu/packages/ftp.scm
index d3f3ef711c..b9c6d209b8 100644
--- a/gnu/packages/ftp.scm
+++ b/gnu/packages/ftp.scm
@@ -170,15 +170,15 @@ as required.")
 (define-public libfilezilla
   (package
     (name "libfilezilla")
-    (version "0.13.1")
+    (version "0.14.0")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "http://download.filezilla-project.org/"
+       (uri (string-append "https://download.filezilla-project.org/"
                            name "/" name "-" version ".tar.bz2"))
        (sha256
         (base32
-         "0347zkapp0wrhfm1yzw7wa1v3lww65ch176scifxn8f9068f1ixb"))))
+         "15cfz98asypf9rfybv4c6kx8nk3wak7qlm1azldc0gd1nqm4xqvz"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("cppunit" ,cppunit)
@@ -207,16 +207,14 @@ output.
 (define-public filezilla
   (package
     (name "filezilla")
-    (version "3.31.0")
+    (version "3.37.4")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "https://sourceforge.net/projects/" name
-                           "/files/FileZilla_Client/" version
-                           "/FileZilla_" version "_src" ".tar.bz2"))
+       (uri (string-append "https://download.filezilla-project.org/client/"
+                           "FileZilla_" version "_src.tar.bz2"))
        (sha256
-        (base32
-         "1rfysb8dil35a7bzj2kw0mzzkys39d7yn6ipsbk8l6rkwfvnii8l"))))
+        (base32 "169wy7ilsh518mcinkjmr6m0kzxbzchmc9mivf5c9b4zp1w4gg3i"))))
     (build-system gnu-build-system)
     (arguments
       ;; Don't let filezilla phone home to check for updates.
diff --git a/gnu/packages/game-development.scm b/gnu/packages/game-development.scm
index 86f2877f82..6b7e71f6c0 100644
--- a/gnu/packages/game-development.scm
+++ b/gnu/packages/game-development.scm
@@ -397,7 +397,7 @@ support.")
 (define-public tiled
   (package
     (name "tiled")
-    (version "1.1.6")
+    (version "1.2.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/bjorn/tiled/archive/v"
@@ -405,7 +405,7 @@ support.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "194ciw8688mikndvxivzb8ql5vm405pkwnn4srzm7ymwfc4xygb0"))))
+                "13dlf5kzvhhjkhy19118x3diakmraz4m9kxrsdam8dms6xivb6lp"))))
     (build-system gnu-build-system)
     (inputs
      `(("qtbase" ,qtbase)
@@ -1080,7 +1080,7 @@ games.")
 (define-public godot
   (package
     (name "godot")
-    (version "3.0.4")
+    (version "3.0.6")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -1089,7 +1089,7 @@ games.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "0i4ssfb6igga9zwvsmahrnasx9cyqrsd6mlmssjgc482fy9q2kz4"))
+                "0g64h0x8dlv6aa9ggfcidk2mknkfl5li7z1phcav8aqp9srj8avf"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -1256,17 +1256,24 @@ a 2D editor view.")
 (define-public guile-chickadee
   (package
     (name "guile-chickadee")
-    (version "0.2.0")
+    (version "0.3.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://files.dthompson.us/chickadee/"
                                   "chickadee-" version ".tar.gz"))
               (sha256
                (base32
-                "10qx0ha5gsayybd186r1my7vc7rf5fbzp9jvmc4xg9a8wz8rqhah"))))
+                "0jl223dybsj5gvs7z4q60gnafj1b7kgi5mx0kj58m5knrp8qwg5h"))))
     (build-system gnu-build-system)
     (arguments
-     '(#:make-flags '("GUILE_AUTO_COMPILE=0")))
+     '(#:make-flags '("GUILE_AUTO_COMPILE=0")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'patch-godir
+           (lambda _
+             ;; Install compiled '.go' files into the site directory.
+             (substitute* "Makefile.in"
+               (("/ccache") "/site-ccache")))))))
     (propagated-inputs
      `(("guile-opengl" ,guile-opengl)
        ("guile-sdl2" ,guile-sdl2)))
diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index 8be87f6f55..bb96bbe68a 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -181,9 +181,73 @@ more advanced player there are new game modes and a wide variety of physics
 settings to tweak as well.")
     (license license:gpl2+)))
 
+(define-public bastet
+  (package
+    (name "bastet")
+    (version "0.43.2")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/fph/bastet.git")
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "09kamxapm9jw9przpsgjfg33n9k94bccv65w95dakj0br33a75wn"))
+       (patches
+        (search-patches "bastet-change-source-of-unordered_set.patch"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags
+       (list (string-append "CXXFLAGS=-I"
+                            (assoc-ref %build-inputs "boost") "/include"))
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure)            ; no configure script
+         (replace 'check
+           ;; The 'Test' target builds the tests, but doesn't actually run them.
+           (lambda* (#:key make-flags #:allow-other-keys)
+             (apply invoke "make" "Test" make-flags)
+             (setenv "HOME" ".")
+             (invoke "./Test")))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out     (assoc-ref outputs "out"))
+                    (share   (string-append out "/share"))
+                    (hicolor (string-append share "/icons/hicolor")))
+               (install-file "bastet"
+                             (string-append out "/bin"))
+
+               (install-file "bastet.desktop"
+                             (string-append share "/applications"))
+               (install-file "bastet.svg"
+                             (string-append hicolor "/scalable/apps"))
+
+               (install-file "bastet.appdata.xml"
+                             (string-append share "/appdata"))
+
+               (install-file "bastet.6"
+                             (string-append out "/share/man/man6"))
+               #t))))))
+    (native-inputs
+     `(("hicolor-icon-theme" ,hicolor-icon-theme)))
+    (inputs
+     `(("boost" ,boost)
+       ("ncurses" ,ncurses)))
+    (home-page "http://fph.altervista.org/prog/bastet.html")
+    (synopsis "Antagonistic Tetris-style falling brick game for text terminals")
+    (description
+     "Bastet (short for Bastard Tetris) is a simple ncurses-based falling brick
+game.  Unlike normal Tetris, Bastet does not choose the next brick at random.
+Instead, it uses a special algorithm to choose the worst brick possible.
+
+Playing bastet can be a painful experience, especially if you usually make
+canyons and wait for the long I-shaped block to clear four rows at a time.")
+    (license license:gpl3+)))
+
 (define-public cataclysm-dda
-  (let ((commit "ad3b0c3d521292d119f97a83390e7acfe9e9e7f7")
-        (revision "1"))
+  (let ((commit "0b2c194e5c6a06f4fbf14a0ec1260e0f3cf2567c")
+        (revision "2"))
     (package
       (name "cataclysm-dda")
       ;; This denotes the version released after the 0.C release.
@@ -196,7 +260,7 @@ settings to tweak as well.")
                       (commit commit)))
                 (sha256
                  (base32
-                  "1kdgbl8zqd53f5yilm2c9nyq3w6585yxl5jvgxy65dlpzxcqqj7y"))
+                  "1yzsn0y2g27bvbxjvivjyjhkmf2w5na1qqw5qfkswcfqqwym2y33"))
                 (file-name (git-file-name name version))))
       (build-system gnu-build-system)
       (arguments
@@ -364,6 +428,59 @@ played.  Freedoom complements the Doom engine with free levels, artwork, sound
 effects and music to make a completely free game.")
    (license license:bsd-3)))
 
+(define-public freedroidrpg
+  (package
+    (name "freedroidrpg")
+    (version "0.16.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "http://ftp.osuosl.org/pub/freedroid/"
+                           "freedroidRPG-" (version-major+minor version) "/"
+                           "freedroidRPG-" version ".tar.gz"))
+       (sha256
+        (base32 "0n4kn38ncmcy3lrxmq8fjry6c1z50z4q1zcqfig0j4jb0dsz2va2"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:configure-flags
+       (list
+        (string-append "CFLAGS="
+                       "-I" (assoc-ref %build-inputs "sdl-gfx") "/include/SDL "
+                       "-I" (assoc-ref %build-inputs "sdl-image") "/include/SDL "
+                       "-I" (assoc-ref %build-inputs "sdl-mixer") "/include/SDL")
+        "--enable-opengl")
+       ;; FIXME: the test suite fails with the following error output:
+       ;;   4586 Segmentation fault      env SDL_VIDEODRIVER=dummy \
+       ;;   SDL_AUDIODRIVER=dummy ./src/freedroidRPG -nb text
+       #:tests? #f))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (inputs
+     `(("glu" ,glu)
+       ("libjpeg" ,libjpeg)
+       ("libogg" ,libogg)
+       ("libpng" ,libpng)
+       ("libvorbis" ,libvorbis)
+       ("mesa" ,mesa)
+       ("python" ,python-wrapper)
+       ("sdl" ,sdl)
+       ("sdl-gfx" ,sdl-gfx)
+       ("sdl-image" ,sdl-image)
+       ("sdl-mixer" ,sdl-mixer)
+       ("zlib" ,zlib)))
+    (home-page "http://www.freedroid.org/")
+    (synopsis "Isometric role-playing game against killer robots")
+    (description
+     "Freedroid RPG is an @dfn{RPG} (Role-Playing Game) with isometric graphics.
+The game tells the story of a world destroyed by a conflict between robots and
+their human masters.  To restore peace to humankind, the player must complete
+numerous quests while fighting off rebelling robots---either by taking control
+of them, or by simply blasting them to pieces with melee and ranged weapons in
+real-time combat.")
+    (license (list license:expat        ; lua/
+                   license:gpl3         ; src/gen_savestruct.py
+                   license:gpl2+))))    ; the rest
+
 (define-public golly
   (package
     (name "golly")
@@ -883,7 +1000,7 @@ Every puzzle has a complete solution, although there may be more than one.")
 (define-public retux
   (package
     (name "retux")
-    (version "1.3.5")
+    (version "1.3.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://savannah/retux/"
@@ -891,7 +1008,7 @@ Every puzzle has a complete solution, although there may be more than one.")
                                   version "-src.tar.gz"))
               (sha256
                (base32
-                "1pcrh3z16fl412r3k7xccrgika19ahb1xh90jihgl8yy7zza2i6p"))))
+                "01bidh4zisjp3nc436x0g85v60dvwb3ig37i7y01sa71j8fm4fmb"))))
     (build-system python-build-system)
     (arguments
      `(#:tests? #f ; no check target
@@ -2020,7 +2137,7 @@ falling, themeable graphics and sounds, and replays.")
 (define-public wesnoth
   (package
     (name "wesnoth")
-    (version "1.14.4")
+    (version "1.14.5")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/wesnoth/wesnoth-"
@@ -2029,7 +2146,7 @@ falling, themeable graphics and sounds, and replays.")
                                   name "-" version ".tar.bz2"))
               (sha256
                (base32
-                "1hw1ap8xxpdwyx1sf8fm1g75p6724y3hwb4kpvyqbsq7bwfwsb9i"))))
+                "1kgpj2f22nnx4mwd1zis3s5ny2983aasgqsmz7wnqaq7n6a7ac85"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f)) ; no check target
@@ -2122,28 +2239,36 @@ on the screen and keyboard to display letters.")
 (define-public raincat
   (package
     (name "raincat")
-    (version "1.1.1.3")
+    (version "1.2.1")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append
-             "http://hackage.haskell.org/package/Raincat/Raincat-"
-             version
-             ".tar.gz"))
+       (uri (string-append "http://hackage.haskell.org/package/Raincat/"
+                           "Raincat-" version ".tar.gz"))
        (sha256
         (base32
-         "1aalh68h6799mv4vyg30zpskl5jkn6x2j1jza7p4lrflyifxzar8"))))
+         "10y9zi22m6hf13c9h8zd9vg7mljpwbw0r3djb6r80bna701fdf6c"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'install 'wrap-executable
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out")))
+               (wrap-program (string-append out "/bin/raincat")
+                 `("LD_LIBRARY_PATH" ":" =
+                   (,(string-append (assoc-ref inputs "freeglut")
+                                    "/lib"))))
+               #t))))))
     (inputs
      `(("ghc-extensible-exceptions" ,ghc-extensible-exceptions)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-random" ,ghc-random)
        ("ghc-glut" ,ghc-glut)
        ("freeglut" ,freeglut)
        ("ghc-opengl" ,ghc-opengl)
-       ("ghc-sdl" ,ghc-sdl)
-       ("ghc-sdl-image" ,ghc-sdl-image)
-       ("ghc-sdl-mixer" ,ghc-sdl-mixer)))
+       ("ghc-sdl2" ,ghc-sdl2)
+       ("ghc-sdl2-image" ,ghc-sdl2-image)
+       ("ghc-sdl2-mixer" ,ghc-sdl2-mixer)))
     (home-page "http://www.bysusanlin.com/raincat/")
     (synopsis "Puzzle game with a cat in lead role")
     (description "Project Raincat is a game developed by Carnegie Mellon
@@ -3533,7 +3658,7 @@ throwing people around in pseudo-randomly generated buildings.")
 (define-public hyperrogue
   (package
     (name "hyperrogue")
-    (version "10.4j")
+    (version "10.4t")
     ;; When updating this package, be sure to update the "hyperrogue-data"
     ;; origin in native-inputs.
     (source (origin
@@ -3544,11 +3669,12 @@ throwing people around in pseudo-randomly generated buildings.")
                     "-src.tgz"))
               (sha256
                (base32
-                "0909p4xvbi1c2jc5rdgrf8b1c60fmsaapabsi6yyglh5znkf0k27"))))
+                "0phqhmnzmc16a23qb4fkil0flzb86kibdckf1r35nc3l0k4193nn"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; no check target
-       #:make-flags '("CXXFLAGS=-std=c++11")
+       #:make-flags '("HYPERROGUE_USE_GLEW=1"
+                      "HYPERROGUE_USE_PNG=1")
        #:phases
        (modify-phases %standard-phases
          (add-after 'set-paths 'set-sdl-paths
@@ -3571,12 +3697,16 @@ throwing people around in pseudo-randomly generated buildings.")
                   (string-append dejavu-dir "/" dejavu-font)))
                (substitute* music-file
                  (("\\*/")
-                  (string-append share-dir "/sounds/"))))
-             ;; Fix Makefile.
-             (substitute* "Makefile"
-               (("g\\+\\+ langen.cpp")
-                "g++ langen.cpp ${CXXFLAGS}")
-               (("savepng.c") "savepng.cpp"))
+                  (string-append share-dir "/sounds/")))
+               (substitute* "sound.cpp"
+                 (("musicfile = \"\"")
+                  (string-append "musicfile = \""
+                                 share-dir "/" music-file "\"")))
+               ;; Disable build machine CPU optimizations and warnings treated
+               ;; as errors.
+               (substitute* "Makefile"
+                 (("-march=native") "")
+                 (("-Werror") "")))
              #t))
          (replace 'install
            (lambda* (#:key inputs outputs #:allow-other-keys)
@@ -3584,7 +3714,7 @@ throwing people around in pseudo-randomly generated buildings.")
                     (bin (string-append out "/bin"))
                     (share-dir (string-append out "/share/hyperrogue")))
                (mkdir-p bin)
-               (copy-file "hyper" (string-append bin "/hyperrogue"))
+               (install-file "hyperrogue" bin)
                (install-file "hyperrogue-music.txt" share-dir))
              #t))
          (add-after 'install 'install-data
@@ -3616,7 +3746,7 @@ throwing people around in pseudo-randomly generated buildings.")
              "-win.zip"))
            (sha256
             (base32
-             "0w61iv2rn93hi0q3hxyyyf9xcr8vi9zd7fjvpz5adpgf94jm3zsc"))))
+             "1xd9v8zzgi8m5ar8g4gy1xx5zqwidz3gn1knz0lwib3kbxx4drpg"))))
        ("unzip" ,unzip)))
     (inputs
      `(("font-dejavu" ,font-dejavu)
@@ -4272,7 +4402,7 @@ fish.  The whole game is accompanied by quiet, comforting music.")
 (define-public crawl
   (package
     (name "crawl")
-    (version "0.21.0")
+    (version "0.22.1")
     (source
      (origin
        (method url-fetch)
@@ -4286,7 +4416,7 @@ fish.  The whole game is accompanied by quiet, comforting music.")
                             version "-nodeps.tar.xz")))
        (sha256
         (base32
-         "0mmnkch8s9l7dh136yjvcyjr0vmyzv7z370rlcyir91qz6gg82n1"))
+         "1qc90wwbxvjzqq66n8kfr0a2ny7sfvv2n84si67jiv2887d0ws6k"))
        (patches (search-patches "crawl-upgrade-saves.patch"))))
     (build-system gnu-build-system)
     (inputs
@@ -5225,7 +5355,7 @@ You can save humanity and get programming skills!")
     (build-system cmake-build-system)
     (inputs `(("bzip2" ,bzip2)
               ("fluid-3" ,fluid-3)
-              ("fluidsynth" ,fluidsynth)
+              ("fluidsynth" ,fluidsynth-1)      ;XXX: try using 2.x when updating
               ("gtk+3" ,gtk+)
               ("libgme" ,libgme)
               ("libjpeg" ,libjpeg)
diff --git a/gnu/packages/gcal.scm b/gnu/packages/gcal.scm
index 425fa1f9a8..32d3849faa 100644
--- a/gnu/packages/gcal.scm
+++ b/gnu/packages/gcal.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2013 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2013, 2018 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -32,7 +32,23 @@
                                  version ".tar.xz"))
              (sha256
               (base32
-               "1av11zkfirbixn05hyq4xvilin0ncddfjqzc4zd9pviyp506rdci"))))
+               "1av11zkfirbixn05hyq4xvilin0ncddfjqzc4zd9pviyp506rdci"))
+             (modules '((guix build utils)))
+             (snippet
+              '(begin
+                 ;; Adjust the bundled gnulib to work with glibc 2.28.  See e.g.
+                 ;; "m4-gnulib-libio.patch".  This is a phase rather than patch
+                 ;; or snippet to work around <https://bugs.gnu.org/32347>.
+                 (substitute* (find-files "lib" "\\.c$")
+                   (("#if defined _IO_ftrylockfile")
+                    "#if defined _IO_EOF_SEEN"))
+                 (substitute* "lib/stdio-impl.h"
+                   (("^/\\* BSD stdio derived implementations")
+                    (string-append "#if !defined _IO_IN_BACKUP && defined _IO_EOF_SEEN\n"
+                                   "# define _IO_IN_BACKUP 0x100\n"
+                                   "#endif\n\n"
+                                   "/* BSD stdio derived implementations")))
+                 #t))))
     (build-system gnu-build-system)
     (home-page "https://www.gnu.org/software/gcal/")
     (synopsis "Calculating and printing a wide variety of calendars")
diff --git a/gnu/packages/geo.scm b/gnu/packages/geo.scm
index ae6ba024e0..4481e21ddf 100644
--- a/gnu/packages/geo.scm
+++ b/gnu/packages/geo.scm
@@ -24,8 +24,10 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages geo)
+  #:use-module (guix build-system cmake)
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system go)
   #:use-module (guix build-system python)
   #:use-module (guix build-system scons)
   #:use-module (guix build-system r)
@@ -37,6 +39,8 @@
   #:use-module (gnu packages check)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages databases)
+  #:use-module (gnu packages datastructures)
+  #:use-module (gnu packages documentation)
   #:use-module (gnu packages fontutils)
   #:use-module (gnu packages cran)
   #:use-module (gnu packages glib)
@@ -44,6 +48,7 @@
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages image)
   #:use-module (gnu packages icu4c)
+  #:use-module (gnu packages lua)
   #:use-module (gnu packages pcre)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
@@ -57,7 +62,7 @@
 (define-public geos
   (package
     (name "geos")
-    (version "3.6.2")
+    (version "3.7.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://download.osgeo.org/geos/geos-"
@@ -65,7 +70,7 @@
                                   ".tar.bz2"))
               (sha256
                (base32
-                "0ak5szby29l9l0vy43dm5z2g92xzdky20q1gc1kah1fnhkgi6nh4"))))
+                "1mrz778m6bd1x9k6sha5kld43kalhq79h2lynlx2jx7xjakl3gsg"))))
     (build-system gnu-build-system)
     (arguments `(#:phases
                  (modify-phases %standard-phases
@@ -760,3 +765,224 @@ location queries to be run in SQL.")
                license:bsd-3 ; files only say "BSD"
                ;; doc
                license:cc-by-sa3.0))))
+
+(define-public tegola
+  (package
+    (name "tegola")
+    (version "0.7.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                     "https://github.com/go-spatial/tegola/archive/v"
+                     version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "09vnzxfn0r70kmd776kcdfqxhzdj11syxa0b27z4ci1k367v7viw"))))
+    (build-system go-build-system)
+    (arguments
+     `(#:import-path "github.com/go-spatial/tegola/cmd/tegola"
+       #:unpack-path "github.com/go-spatial"
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'set-version
+           (lambda _
+             (with-directory-excursion
+               (string-append "src/github.com/go-spatial/tegola-" ,version)
+               (substitute* '("cmd/tegola/cmd/root.go"
+                              "cmd/tegola_lambda/main.go")
+                 (("version not set") ,version)))
+             #t))
+         (add-before 'build 'rename-import
+           (lambda _
+             (rename-file (string-append "src/github.com/go-spatial/tegola-" ,version)
+                          "src/github.com/go-spatial/tegola")
+             #t)))))
+    (home-page "http://tegola.io")
+    (synopsis "Vector tile server for maps")
+    (description "Tegola is a free vector tile server written in Go.  Tegola
+takes geospatial data and slices it into vector tiles that can be efficiently
+delivered to any client.")
+    (license (list
+               license:expat
+               ;; Some packages in vendor have other licenses
+               license:asl2.0
+               license:bsd-2
+               license:bsd-3
+               license:wtfpl2))))
+
+(define-public imposm3
+  (package
+    (name "imposm3")
+    (version "0.6.0-alpha.4")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "https://github.com/omniscale/imposm3/archive/v"
+                            version ".tar.gz"))
+    (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "06f0kwmv52yd5m9jlckqxqmkf0cnqy3hamakrvg9lspplyqrds80"))))
+    (build-system go-build-system)
+    (arguments
+     `(#:import-path "github.com/omniscale/imposm3/cmd/imposm"
+       #:unpack-path "github.com/omniscale"
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'rename-import
+           (lambda _
+             (rename-file (string-append "src/github.com/omniscale/imposm3-" ,version)
+                          "src/github.com/omniscale/imposm3")
+             #t))
+         (add-before 'build 'set-version
+           (lambda _
+             (substitute* "src/github.com/omniscale/imposm3/version.go"
+               (("0.0.0-dev") ,version))
+             #t)))))
+    (inputs
+     `(("geos" ,geos)
+       ("leveldb" ,leveldb)))
+    (home-page "https://imposm.org/")
+    (synopsis "OpenStreetMap importer for PostGIS")
+    (description "Imposm is an importer for OpenStreetMap data.  It reads PBF
+files and imports the data into PostgreSQL/PostGIS databases.  It is designed
+to create databases that are optimized for rendering/tile/map-services.")
+    (license (list
+               license:asl2.0
+               ;; Some dependencies in vendor have different licenses
+               license:expat
+               license:bsd-2
+               license:bsd-3))))
+
+(define-public protozero
+  (package
+    (name "protozero")
+    (version "1.6.3")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "https://github.com/mapbox/protozero/archive/v"
+                            version ".tar.gz"))
+    (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "1xaj4phz1r7xn0vgdfvfkz8b0bizgb6mavjky1zqcvdmbwgwgly5"))))
+    (build-system cmake-build-system)
+    (home-page "https://github.com/mapbox/protozero")
+    (synopsis "Minimalistic protocol buffer decoder and encoder in C++")
+    (description "Protozero is a minimalistic protocol buffer decored and
+encoder in C++.  The developer using protozero has to manually translate the
+@file{.proto} description into code.")
+    (license (list
+               license:asl2.0; for folly
+               license:bsd-2))))
+
+(define-public libosmium
+  (package
+    (name "libosmium")
+    (version "2.14.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "https://github.com/osmcode/libosmium/archive/v"
+                version ".tar.gz"))
+    (file-name (string-append name "-" version ".tar.gz"))
+        (sha256
+         (base32
+          "0d9b46qiw7zkw1h9lygjdwqxnbhm3c7v8kydzw9f9f778cyagc94"))))
+    (build-system cmake-build-system)
+    (propagated-inputs
+     `(("boost" ,boost)
+       ("expat" ,expat)
+       ("gdal" ,gdal)
+       ("geos" ,geos)
+       ("proj.4" ,proj.4)
+       ("protozero" ,protozero)
+       ("sparsehash" ,sparsehash)
+       ("zlib" ,zlib)))
+    (native-inputs
+     `(("doxygen" ,doxygen)))
+    (home-page "https://osmcode.org/libosmium/")
+    (synopsis "C++ library for working with OpenStreetMap data")
+    (description "Libosmium is a fast and flexible C++ library for working with
+OpenStreetMap data.")
+    (license license:boost1.0)))
+
+(define-public osm2pgsql
+  (package
+    (name "osm2pgsql")
+    (version "0.96.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/openstreetmap/osm2pgsql/archive/"
+                                  version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "08y7776r4l9v9177a4q6cfdri0lpirky96m6g699hwl7v1vhw0mn"))
+              (modules '((guix build utils)))
+              (snippet
+               '(begin
+                  (delete-file-recursively "contrib/protozero")
+                  (delete-file-recursively "contrib/libosmium")
+                  #t))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:tests? #f; tests fail because we need to setup a database
+       #:configure-flags
+       (list (string-append "-DOSMIUM_INCLUDE_DIR="
+                            (assoc-ref %build-inputs "libosmium")
+                            "/include")
+             (string-append "-DPROTOZERO_INCLUDE_DIR="
+                            (assoc-ref %build-inputs "protozero")
+                            "/include"))))
+    (inputs
+     `(("boost" ,boost)
+       ("expat" ,expat)
+       ("libosmium" ,libosmium)
+       ("lua" ,lua)
+       ("postgresql" ,postgresql)
+       ("proj.4" ,proj.4)
+       ("protozero" ,protozero)
+       ("zlib" ,zlib)))
+    (native-inputs
+     `(("python-2" ,python-2)
+       ("python2-psycopg2" ,python2-psycopg2)))
+    (home-page "https://github.com/openstreetmap/osm2pgsql")
+    (synopsis "OSM data importer to postgresql")
+    (description "Osm2pgsql is a tool for loading OpenStreetMap data into a
+PostgreSQL / PostGIS database suitable for applications like rendering into a
+map, geocoding with Nominatim, or general analysis.")
+    (license license:gpl2+)))
+
+(define-public tippecanoe
+  (package
+    (name "tippecanoe")
+    (version "1.31.5")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/mapbox/tippecanoe/archive/"
+                                  version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1057na1dkgjaryr7jr15lqkxpam111d3l5zdpdkqzzzpxmdjxqcf"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases (delete 'configure))
+       #:test-target "test"
+       #:make-flags
+       (list "CC=gcc"
+             (string-append "PREFIX=" (assoc-ref %outputs "out")))))
+    (inputs
+     `(("perl" ,perl)
+       ("sqlite" ,sqlite)
+       ("zlib" ,zlib)))
+    (home-page "https://github.com/mapbox/tippecanoe")
+    (synopsis "Vector tile server for maps")
+    (description "Tippecanoe creates scale-independent view of data, so that
+the texture and density of features is visible at every zoom level, instead of
+dropping features at lower levels.")
+    (license license:bsd-2)))
diff --git a/gnu/packages/gimp.scm b/gnu/packages/gimp.scm
index df8f242c7a..cd0deac158 100644
--- a/gnu/packages/gimp.scm
+++ b/gnu/packages/gimp.scm
@@ -4,6 +4,7 @@
 ;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Leo Famulari <leo@famulari.name>
+;;; Copyright © 2018 Thorsten Wilms <t_w_@freenet.de>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -305,3 +306,67 @@ brushstrokes which is used by MyPaint and GIMP.")
 MyPaint.")
     (home-page "https://github.com/Jehan/mypaint-brushes")
     (license license:cc0)))
+
+(define-public gimp-resynthesizer
+  ;; GIMP does not respect any plugin search path environment variable, so after
+  ;; installation users have to edit their GIMP settings to include
+  ;; "$HOME/.guix-profile/lib/gimp/2.0/plug-ins/" in
+  ;; “Edit->Preferences->Folders->Plug Ins”.
+  (package
+    (name "gimp-resynthesizer")
+    (version "2.0.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/bootchk/resynthesizer/archive/v"
+			   version ".tar.gz"))
+       (sha256
+        (base32
+         "0l3404w6rqny7h3djskxf149gzx6x4qhndgbh3403c9lbh4pi1kr"))
+       (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system gnu-build-system)
+    (arguments
+     `( ;; Turn off tests to avoid:
+       ;; make[1]: *** No rule to make target '../src/resynth-gui.c', needed by 'resynthesizer.pot'.  Stop.
+       #:tests? #f
+       #:phases
+       (modify-phases %standard-phases
+	 (add-after 'unpack 'set-env
+	   (lambda _
+	     (setenv "CONFIG_SHELL" (which "sh"))
+	     #t))
+	 (add-after 'configure 'set-prefix
+           ;; Install plugin under $prefix, not under GIMP's libdir.
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((target (string-append (assoc-ref outputs "out")
+                                          "/lib/gimp/"
+                                          ,(version-major
+                                            (package-version gimp))
+                                          ".0")))
+               (substitute* (list "src/resynthesizer/Makefile"
+				  "src/resynthesizer-gui/Makefile")
+		 (("GIMP_LIBDIR = .*")
+                  (string-append "GIMP_LIBDIR = " target "\n")))
+               (mkdir-p target)
+               #t))))))
+    (native-inputs
+     `(("autoconf" ,autoconf-wrapper)
+       ("automake" ,automake)
+       ("glib" ,glib "bin")                       ; glib-gettextize
+       ("intltool" ,intltool)
+       ("pkg-config" ,pkg-config)))
+    (inputs
+     `(("gimp" ,gimp)
+       ("gdk-pixbuf" ,gdk-pixbuf)                 ; needed by gimp-2.0.pc
+       ("cairo" ,cairo)
+       ("gegl" ,gegl)
+       ("gtk+" ,gtk+-2)                           ; needed by gimpui-2.0.pc
+       ("glib" ,glib)))
+    (home-page "https://github.com/bootchk/resynthesizer")
+    (synopsis "GIMP plugins for texture synthesis")
+    (description
+     "This package provides resynthesizer plugins for GIMP, which encompasses
+tools for healing selections (content-aware fill), enlarging the canvas and
+healing the border, increasing the resolution while adding detail, and
+transfering the style of an image.")
+    (license license:gpl3+)))
diff --git a/gnu/packages/gl.scm b/gnu/packages/gl.scm
index 067b41b476..03c8b497b8 100644
--- a/gnu/packages/gl.scm
+++ b/gnu/packages/gl.scm
@@ -725,7 +725,7 @@ mixed vector/bitmap output.")
 (define-public virtualgl
   (package
     (name "virtualgl")
-    (version "2.5.2")
+    (version "2.6")
     (source
      (origin
        (method url-fetch)
@@ -734,16 +734,17 @@ mixed vector/bitmap output.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "0rnid3hwrry9d5d4m7sygq00xxx976rgk00a3557m9r5kxbmy476"))))
+         "1ck1d0w19cgyqvrb9mdlj6l5db90xf18yln71kdninlqxvpgj6h7"))))
     (arguments
-     `(#:tests? #f ;; no tests are available
+     `(#:tests? #f                      ; no tests are available
        #:configure-flags (list
-                           (string-append "-DCMAKE_INSTALL_LIBDIR="
-                                          (assoc-ref %outputs "out") "/lib")
-                           "-DVGL_USESSL=1"))) ;; use OpenSSL
+                          (string-append "-DCMAKE_INSTALL_LIBDIR="
+                                         (assoc-ref %outputs "out") "/lib")
+                          "-DVGL_USESSL=1"))) ; use OpenSSL
     (build-system cmake-build-system)
     (inputs `(("glu" ,glu)
               ("libjpeg-turbo" ,libjpeg-turbo)
+              ("libxtst" ,libxtst)
               ("mesa" ,mesa)
               ("openssl" ,openssl)))
     (native-inputs `(("pkg-config" ,pkg-config)))
diff --git a/gnu/packages/glib.scm b/gnu/packages/glib.scm
index 8dff95fc70..491f688c8e 100644
--- a/gnu/packages/glib.scm
+++ b/gnu/packages/glib.scm
@@ -787,7 +787,7 @@ programming langauage.  It also contains the utility
 (define-public appstream-glib
   (package
     (name "appstream-glib")
-    (version "0.7.12")
+    (version "0.7.14")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://people.freedesktop.org/~hughsient/"
@@ -795,7 +795,7 @@ programming langauage.  It also contains the utility
                                   "appstream-glib-" version ".tar.xz"))
               (sha256
                (base32
-                "1jcb2bggcic3iczr2hn8zp8a3c2hl1xjij0aawr7kwqmzh9b3jms"))))
+                "0n0s99jmx2sx5895lcvmfjwa9r0f06i71495dpn9v9frz4asvk3d"))))
     (build-system meson-build-system)
     (native-inputs
      `(("gettext" ,gettext-minimal)
diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index 98ead71e34..ba37d6afa4 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -115,6 +115,8 @@
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages pulseaudio)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages python-crypto)
+  #:use-module (gnu packages python-web)
   #:use-module (gnu packages rdesktop)
   #:use-module (gnu packages scanner)
   #:use-module (gnu packages selinux)
@@ -396,28 +398,30 @@ access the common Google services, and has full asynchronous support.")
 (define-public libgxps
   (package
     (name "libgxps")
-    (version "0.2.5")
+    (version "0.3.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnome/sources/" name "/"
                                   (version-major+minor version) "/"
                                   name "-" version ".tar.xz"))
-              (patches (search-patches "libgxps-CVE-2017-11590.patch"))
               (sha256
                (base32
-                "184r06s8g20cfigg7m169n42jjsc9wmzzlycr4g1fxxhr72r8x9y"))))
-    (build-system gnu-build-system)
+                "1bhgrpb6ndlp11qwr95g9piklmjcsca7bi04f8gy9ziipm1i6as1"))))
+    (build-system meson-build-system)
     (native-inputs
      `(("gobject-introspection" ,gobject-introspection)
        ("pkg-config" ,pkg-config)))
     (inputs
-     `(("cairo" ,cairo)
-       ("glib" ,glib)
-       ("libarchive" ,libarchive)
-       ("libjpeg" ,libjpeg)
+     `(("gtk+" ,gtk+)
+       ("libjpeg" ,libjpeg-turbo)
        ("lcms" ,lcms)
        ("libtiff" ,libtiff)
        ("nettle" ,nettle)))
+    (propagated-inputs
+     ;; In Requires of libgxps.pc.
+     `(("cairo" ,cairo)
+       ("glib" ,glib)
+       ("libarchive" ,libarchive)))
     (home-page "https://wiki.gnome.org/Projects/libgxps")
     (synopsis "GObject-based library for handling and rendering XPS documents")
     (description
@@ -4094,35 +4098,27 @@ work and the interface is well tested.")
 (define-public eolie
   (package
     (name "eolie")
-    (version "0.9.15")
+    (version "0.9.38")
     (source (origin
               (method url-fetch)
-              (uri (string-append "https://github.com/gnumdk/eolie/"
-                                  "releases/download/" version
-                                  "/eolie-" version ".tar.xz"))
+              (uri (string-append "https://gitlab.gnome.org/World/eolie/"
+                                  "uploads/9814c06a1bc83ea09c3da8719a9ed11b/"
+                                  "eolie-" version ".tar.xz"))
               (sha256
                (base32
-                "0glydxp1xh85gfidk1l9miqn6qxdbvvk5s3iy0pjlv8nrs3263jd"))))
-    (build-system glib-or-gtk-build-system)
+                "10vrh91rapgfmqwc6jkcybpmlvn4q0y8bnklw3rddzigf9kvqsff"))))
+    (build-system meson-build-system)
     (arguments
-     `(#:phases
+     `(#:glib-or-gtk? #t
+       #:phases
        (modify-phases %standard-phases
-         (delete 'configure)
-         (replace 'build
-           (lambda* (#:key outputs #:allow-other-keys)
-             (zero? (system* "meson" "build"
-                             "--prefix" (assoc-ref outputs "out")))))
-         (replace 'check
-           (lambda _ (zero? (system* "ninja" "-C" "build" "test"))))
-         (replace 'install
-           (lambda* (#:key outputs #:allow-other-keys)
-             (zero? (system* "ninja" "-C" "build" "install"))))
          (add-after 'wrap 'wrap-more
            (lambda* (#:key inputs outputs #:allow-other-keys)
              (let* ((out  (assoc-ref outputs "out"))
                     ;; These libraries must be on LD_LIBRARY_PATH.
                     (libs '("gtkspell3" "webkitgtk" "libsoup" "libsecret"
                             "atk" "gtk+" "gsettings-desktop-schemas"
+                            "gcc:lib" ; needed b/c webkitgtk is built with gcc-7
                             "gobject-introspection"))
                     (path (string-join
                            (map (lambda (lib)
@@ -4135,12 +4131,12 @@ work and the interface is well tested.")
                  `("GI_TYPELIB_PATH" = (,(getenv "GI_TYPELIB_PATH")))))
              #t)))))
     (native-inputs
-     `(("intltool" ,intltool)
+     `(("gcc:lib" ,gcc-7 "lib") ; needed because webkitgtk is built with gcc-7
+       ("intltool" ,intltool)
        ("itstool" ,itstool)
        ("pkg-config" ,pkg-config)
-       ("meson" ,meson-for-build)
-       ("ninja" ,ninja)
        ("python" ,python)
+       ("glib:bin" ,glib "bin")
        ("gtk+" ,gtk+ "bin")))
     (inputs
      `(("gobject-introspection" ,gobject-introspection)
@@ -4150,12 +4146,14 @@ work and the interface is well tested.")
        ("atk" ,atk)    ; propagated by gtk+, but we need it in LD_LIBRARY_PATH
        ("python" ,python-wrapper)
        ("python-dateutil" ,python-dateutil)
+       ("python-pyfxa" ,python-pyfxa)
        ("python-pygobject" ,python-pygobject)
        ("python-pycairo" ,python-pycairo)
+       ("python-pycrypto" ,python-pycrypto)
        ("libsecret" ,libsecret)
        ("gtkspell3" ,gtkspell3)
        ("gsettings-desktop-schemas" ,gsettings-desktop-schemas)
-       ("webkitgtk" ,webkitgtk)))
+       ("webkitgtk" ,webkitgtk-2.22)))
     (home-page "https://wiki.gnome.org/Apps/Eolie")
     (synopsis "Web browser for GNOME")
     (description
@@ -4193,6 +4191,7 @@ a secret password store, an adblocker, and a modern UI.")
      `(("dconf" ,dconf)))
     (native-inputs
      `(("desktop-file-utils" ,desktop-file-utils) ; for update-desktop-database
+       ("gcc" ,gcc-7)  ; needed because webkitgtk-2.22 is compiled with gcc-7
        ("glib:bin" ,glib "bin") ; for glib-mkenums
        ("gtk+:bin" ,gtk+ "bin") ; for gtk-update-icon-cache
        ("intltool" ,intltool)
@@ -4213,7 +4212,7 @@ a secret password store, an adblocker, and a modern UI.")
        ("libxslt" ,libxslt)
        ("nettle" ,nettle) ; for hogweed
        ("sqlite" ,sqlite)
-       ("webkitgtk" ,webkitgtk)))
+       ("webkitgtk" ,webkitgtk-2.22)))
     (home-page "https://wiki.gnome.org/Apps/Web")
     (synopsis "GNOME web browser")
     (description
@@ -6936,7 +6935,7 @@ that support the Assistive Technology Service Provider Interface (AT-SPI).")
 (define-public gspell
   (package
     (name "gspell")
-    (version "1.4.2")
+    (version "1.8.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnome/sources/" name "/"
@@ -6944,7 +6943,7 @@ that support the Assistive Technology Service Provider Interface (AT-SPI).")
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1683vyyfq3q0ph665jj6id8hnlyid4qxzmqiwpv97gmz8zksg6x5"))
+                "1rdv873ixhwr15jwgc2z6k6y0hj353fqnwsy7zkh0c30qwiiv6l1"))
               (patches (search-patches "gspell-dash-test.patch"))))
     (build-system glib-or-gtk-build-system)
     (arguments
@@ -6978,7 +6977,7 @@ that support the Assistive Technology Service Provider Interface (AT-SPI).")
        ("aspell-dict-en" ,aspell-dict-en)
        ("xorg-server" ,xorg-server)))
     (propagated-inputs
-     `(("enchant" ,enchant)))           ; enchant.pc is required by gspell-1.pc
+     `(("enchant" ,enchant)))            ;enchant.pc is required by gspell-1.pc
     (home-page "https://wiki.gnome.org/Projects/gspell")
     (synopsis "GNOME's alternative spell checker")
     (description
@@ -7229,8 +7228,73 @@ It supports ripping to any audio codec supported by a GStreamer plugin, such as
 mp3, Ogg Vorbis and FLAC")
     (license license:gpl2+)))
 
+(define-public soundconverter
+  (package
+    (name "soundconverter")
+    (version "3.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://launchpad.net/soundconverter/trunk/"
+                           version "/+download/"
+                           "soundconverter-" version ".tar.xz"))
+
+       (sha256
+        (base32
+         "1wrxf5py54xplrf97qp24pzbis0cvax5c6k0c7vr3z3ry8r7gd7c"))
+       (patches
+        (search-patches
+         "soundconverter-remove-gconf-dependency.patch"))))
+    (build-system glib-or-gtk-build-system)
+    (arguments
+     `(#:imported-modules ((guix build python-build-system)
+                           (guix build glib-or-gtk-build-system)
+                           ,@%gnu-build-system-modules)
+
+       #:modules ((guix build glib-or-gtk-build-system)
+                  (guix build utils)
+                  ((guix build gnu-build-system) #:prefix gnu:)
+                  ((guix build python-build-system) #:prefix python:))
+
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-POTFILES.in
+           (lambda _
+             (substitute* "po/POTFILES.in"
+               ;; This file doesn't exist, so without removing it, the 'check
+               ;; phase fails for the po directory
+               (("soundconverter/gconfstore\\.py") ""))))
+         (add-after 'install 'wrap-soundconverter-for-python
+           (assoc-ref python:%standard-phases 'wrap))
+         (add-after 'install 'wrap-soundconverter
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let ((out               (assoc-ref outputs "out"))
+                   (gi-typelib-path   (getenv "GI_TYPELIB_PATH"))
+                   (gst-plugin-path   (getenv "GST_PLUGIN_SYSTEM_PATH")))
+               (wrap-program (string-append out "/bin/soundconverter")
+                 `("GI_TYPELIB_PATH"        ":" prefix (,gi-typelib-path))
+                 `("GST_PLUGIN_SYSTEM_PATH" ":" prefix (,gst-plugin-path))))
+             #t)))))
+    (native-inputs
+     `(("intltool" ,intltool)
+       ("pkg-config" ,pkg-config)
+       ("glib:bin" ,glib "bin")))
+    (inputs
+     `(("gtk+" ,gtk+)
+       ("python" ,python)
+       ("python-pygobject" ,python-pygobject)
+       ("gstreamer" ,gstreamer)
+       ("gst-plugins-base" ,gst-plugins-base)))
+    (home-page "http://soundconverter.org/")
+    (synopsis "Convert between audio formats with a graphical interface")
+    (description
+     "SoundConverter supports converting between many audio formats including
+Opus, Ogg Vorbis, FLAC and more.  It supports parallel conversion, and
+configurable file renaming. ")
+    (license license:gpl3)))
+
 (define-public workrave
-  (let ((commit "v1_10_20"))
+  (let ((commit "v1_10_21"))
     (package
       (name "workrave")
       (version (string-map (match-lambda
@@ -7242,18 +7306,11 @@ mp3, Ogg Vorbis and FLAC")
                 (uri (git-reference
                       (url "https://github.com/rcaelers/workrave.git")
                       (commit commit)))
-                (file-name (string-append name "-" version "-checkout"))
+                (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "099a87zkrkmsgfz9isrfm89dh545x52891jh6qxmn19h6wwsi941"))))
+                  "150qca8c552fakjlzkgarsxgp87l1xcwn19svqsa9d0cygqxjgia"))))
       (build-system glib-or-gtk-build-system)
-      (arguments
-       `(#:phases
-         (modify-phases %standard-phases
-           (add-after 'unpack 'autogen
-             (lambda _
-               (invoke "sh" "autogen.sh")
-               #t)))))
       (propagated-inputs `(("glib" ,glib)
                            ("gtk+" ,gtk+)
                            ("gdk-pixbuf" ,gdk-pixbuf)
diff --git a/gnu/packages/gnucash.scm b/gnu/packages/gnucash.scm
index fc8a9b6bfc..4e68f20866 100644
--- a/gnu/packages/gnucash.scm
+++ b/gnu/packages/gnucash.scm
@@ -28,6 +28,7 @@
   #:use-module (guix build-system cmake)
   #:use-module (gnu packages)
   #:use-module (gnu packages autotools)
+  #:use-module (gnu packages base)
   #:use-module (gnu packages boost)
   #:use-module (gnu packages check)
   #:use-module (gnu packages cmake)
@@ -50,7 +51,7 @@
 (define-public gnucash
   (package
     (name "gnucash")
-    (version "3.0")
+    (version "3.3")
     (source
      (origin
       (method url-fetch)
@@ -58,11 +59,9 @@
                           version "/gnucash-" version ".tar.bz2"))
       (sha256
        (base32
-        "1ffvf1rryg5yin86fnf1zvy6hnpwzrjarbdfmjmrf2mqlmv48xac"))
-
-      ;; TODO: rebase this patch
-;      (patches (search-patches "gnucash-price-quotes-perl.patch"))
-      ))
+        "0grr5qi5rn1xvr7qx5d7mcxa2mcgycy2b325ry73bb485a6yv5l3"))
+      (patches (search-patches "gnucash-price-quotes-perl.patch"
+                               "gnucash-disable-failing-tests.patch"))))
     (build-system cmake-build-system)
     (inputs
      `(("guile" ,guile-2.2)
@@ -76,7 +75,8 @@
        ("webkitgtk" ,webkitgtk)
        ("aqbanking" ,aqbanking)
        ("perl-date-manip" ,perl-date-manip)
-       ("perl-finance-quote" ,perl-finance-quote)))
+       ("perl-finance-quote" ,perl-finance-quote)
+       ("tzdata" ,tzdata-for-tests)))
     (native-inputs
      `(("glib" ,glib "bin") ; glib-compile-schemas, etc.
        ("intltool" ,intltool)
@@ -90,6 +90,13 @@
        #:configure-flags
        (list "-DWITH_OFX=OFF"  ; libofx is not available yet
              "-DWITH_SQL=OFF") ; without dbi.h
+       #:make-flags '("GUILE_AUTO_COMPILE=0")
+       #:modules ((guix build cmake-build-system)
+                  ((guix build glib-or-gtk-build-system) #:prefix glib-or-gtk:)
+                  (guix build utils))
+       #:imported-modules (,@%gnu-build-system-modules
+                           (guix build cmake-build-system)
+                           (guix build glib-or-gtk-build-system))
        #:phases
        (modify-phases %standard-phases
          (add-after 'unpack 'unpack-gmock
@@ -99,14 +106,28 @@
                      "-C" "gmock" "--strip-components=1")
              (setenv "GMOCK_ROOT" (string-append (getcwd) "/gmock/googlemock"))
              #t))
+         (add-after 'unpack 'set-env-vars
+           (lambda* (#:key inputs #:allow-other-keys)
+             (let ((tzdata (assoc-ref inputs "tzdata")))
+               ;; At least one test is time-related and requires this
+               ;; environment variable.
+               (setenv "TZDIR"
+                       (string-append tzdata
+                                      "/share/zoneinfo"))
+               (substitute* "CMakeLists.txt"
+                 (("set\\(SHELL /bin/bash\\)")
+                  (string-append "set(SHELL " (which "bash") ")")))
+               #t)))
          ;; There are about 100 megabytes of documentation.
          (add-after
           'install 'install-docs
           (lambda* (#:key inputs outputs #:allow-other-keys)
             (let ((docs (assoc-ref inputs "gnucash-docs"))
                   (doc-output (assoc-ref outputs "doc")))
+              (mkdir-p (string-append doc-output "/share"))
               (symlink (string-append docs "/share/gnome")
-                       (string-append doc-output "/share/gnome")))))
+                       (string-append doc-output "/share/gnome"))
+              #t)))
          (add-after
           'install-docs 'wrap-programs
           (lambda* (#:key inputs outputs #:allow-other-keys)
@@ -134,7 +155,11 @@
                       '("gnucash"
                         "gnc-fq-check"
                         "gnc-fq-helper"
-                        "gnc-fq-dump")))))))
+                        "gnc-fq-dump"))))
+         (add-after 'install 'glib-or-gtk-compile-schemas
+           (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-compile-schemas))
+         (add-after 'install 'glib-or-gtk-wrap
+           (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-wrap)))))
     (home-page "https://www.gnucash.org/")
     (synopsis "Personal and small business financial accounting software")
     (description
@@ -154,11 +179,11 @@ financial calculations or scheduled transactions.")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://sourceforge/gnucash/gnucash-docs/"
+       (uri (string-append "mirror://sourceforge/gnucash/gnucash%20%28stable%29/"
                            version "/gnucash-docs-" version ".tar.gz"))
        (sha256
         (base32
-         "0yq65s3z3dwdwdf2nq1d1w9ckdjdyjwkfpmvhzyib54b66q65xh5"))))
+         "10v4hw4lh888r8yv473pqrvzfjg8dwamk62sghs93rn88ndwm16c"))))
     (build-system gnu-build-system)
     ;; These are native-inputs because they are only required for building the
     ;; documentation.
diff --git a/gnu/packages/gnupg.scm b/gnu/packages/gnupg.scm
index 0cd9818326..3d6727bbde 100644
--- a/gnu/packages/gnupg.scm
+++ b/gnu/packages/gnupg.scm
@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2013, 2015, 2018 Andreas Enge <andreas@enge.fr>
-;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2014, 2018 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2014, 2015, 2016 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
 ;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
@@ -67,7 +67,8 @@
   #:use-module (guix git-download)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system perl)
-  #:use-module (guix build-system python))
+  #:use-module (guix build-system python)
+  #:use-module (srfi srfi-1))
 
 (define-public libgpg-error
   (package
@@ -458,6 +459,13 @@ strong randomness, and more.  It is implemented using the foreign function
 interface (FFI) of Guile.")
     (license license:gpl3+)))
 
+(define-public guile2.0-gcrypt
+  (package (inherit guile-gcrypt)
+    (name "guile2.0-gcrypt")
+    (inputs
+     `(("guile" ,guile-2.0)
+       ,@(alist-delete "guile" (package-inputs guile-gcrypt))))))
+
 (define-public python-gpg
   (package
     (name "python-gpg")
diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm
index 77a74a0ec4..39281b59e5 100644
--- a/gnu/packages/gnuzilla.scm
+++ b/gnu/packages/gnuzilla.scm
@@ -3,7 +3,7 @@
 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2014, 2015, 2016, 2017, 2018 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com>
-;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Alex Griffin <a@ajgrf.com>
 ;;; Copyright © 2017 Clément Lassieur <clement@lassieur.org>
 ;;; Copyright © 2017 Nils Gillmann <ng0@n0.is>
@@ -35,6 +35,8 @@
   #:use-module (guix git-download)
   #:use-module (guix utils)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system cargo)
+  #:use-module (gnu packages audio)
   #:use-module (gnu packages autotools)
   #:use-module (gnu packages base)
   #:use-module (gnu packages databases)
@@ -58,8 +60,10 @@
   #:use-module (gnu packages xorg)
   #:use-module (gnu packages gl)
   #:use-module (gnu packages assembly)
+  #:use-module (gnu packages rust)
   #:use-module (gnu packages icu4c)
   #:use-module (gnu packages video)
+  #:use-module (gnu packages xiph)
   #:use-module (gnu packages xdisorg)
   #:use-module (gnu packages readline))
 
@@ -467,10 +471,10 @@ security standards.")
     (license license:mpl2.0)))
 
 (define (mozilla-patch file-name changeset hash)
-  "Return an origin for CHANGESET from the mozilla-esr52 repository."
+  "Return an origin for CHANGESET from the mozilla-esr60 repository."
   (origin
     (method url-fetch)
-    (uri (string-append "https://hg.mozilla.org/releases/mozilla-esr52/raw-rev/"
+    (uri (string-append "https://hg.mozilla.org/releases/mozilla-esr60/raw-rev/"
                         changeset))
     (sha256 (base32 hash))
     (file-name file-name)))
@@ -478,112 +482,43 @@ security standards.")
 (define-public icecat
   (package
     (name "icecat")
-    (version "52.6.0-gnu1")
+    (version "60.2.0-gnu1")
     (source
      (origin
       (method url-fetch)
+      ;; Temporary URL pending official release:
+      (uri "https://alpha.gnu.org/gnu/gnuzilla/60.2.0/icecat-60.2.0-gnu1.tar.bz2")
+      #;
       (uri (string-append "mirror://gnu/gnuzilla/"
                           (first (string-split version #\-))
                           "/" name "-" version ".tar.bz2"))
       (sha256
        (base32
-        "09fn54glqg1aa93hnz5zdcy07cps09dbni2b4200azh6nang630a"))
+        "0lqx7g79x15941rhjr3qsfwsny6vzc7d7abdmvjy6jjbqkqlc1zl"))
       (patches
        (list
-        (search-patch "icecat-avoid-bundled-libraries.patch")
-        (search-patch "icecat-use-system-harfbuzz.patch")
-        (search-patch "icecat-use-system-graphite2.patch")
-        (mozilla-patch "icecat-bug-546387.patch"         "d13e3fefb76e" "1b760r0bg2ydbl585wlmajljh1nlisrwxvjws5b28a3sgjy01i6k")
-        (mozilla-patch "icecat-bug-1350152.patch"        "f822bda79c28" "1wf56169ca874shr6r7qx40s17h2gwj7ngmpyylrpmd1c6hipvsj")
-        (mozilla-patch "icecat-bug-1411708.patch"        "34c968767eb7" "0l2jy201ikj3m3h66mvlsj4y0ki7cpm7x7nnfygbwnfxg42s1sip")
-        (mozilla-patch "icecat-bug-1375217.patch"        "00fc630c9a46" "17pcprp452nslk6sac6sili0p74zh8w3g0v1wsdn0ikm9xmnphhv")
-        (mozilla-patch "icecat-CVE-2018-5145.patch"      "f0ec180993d2" "0jiazxcwki83wr00fyh2g518ynsd33p7nk65zk4d1682gn22lc8v")
-        (mozilla-patch "icecat-CVE-2018-5130.patch"      "a6a9e26688c1" "0cvizvilb4k422j2gzqcbakznvsffmk6n6xn1ayj5rgxfaizkkqk")
-        (mozilla-patch "icecat-CVE-2018-5125-pt1.patch"  "198ad052621e" "1721zx8hifdlflrhvw6hmkdgjbvsmxl9n84iji5qywhlp2krdk9r")
-        (mozilla-patch "icecat-bug-1426087.patch"        "391ea77ebfdb" "1fhkvd0z6mvdkj7m0d3jlj42rsdw5r4x122c1wb1i428228ifw6n")
-        (mozilla-patch "icecat-bug-1416307.patch"        "54f2f7f93b30" "1ncjir16mqya37wgf6fy2rqki3vl433c4grjr3fypmlig6xfgg1l")
-        (mozilla-patch "icecat-CVE-2018-5127.patch"      "2c4d7a59041b" "178c6gid89cvw52yqs43i6x6s5w0hslj0rfa2r8b4762ij3civ92")
-        (mozilla-patch "icecat-CVE-2018-5125-pt2.patch"  "f87ef3774d5e" "0payf3az2w93nzl5qknqx290jbxk8v39rwhdgq7wyd5f245dywxk")
-        (mozilla-patch "icecat-CVE-2018-5125-pt3.patch"  "ac743923f81d" "0msyr45xr1j5q4x6ah4r907pwjngyi0k6pp9y8ixk21cnwbzrdwx")
-        (mozilla-patch "icecat-CVE-2018-5129.patch"      "456913d7e8b5" "0fx0s06kxxj7g4hllinaskgh41z3k48zml6yqqzxx485qk3hdh9x")
-        (mozilla-patch "icecat-bug-1334465-pt1.patch"    "f95c5b881442" "0iaddhf65jd9cycj4bw0b207n2jiqkr4q84jifzyqn4ygs75wdqd")
-        (mozilla-patch "icecat-bug-1334465-pt2.patch"    "8a4265c8fb41" "1d9zfdbrlw9wzr84b7pj7lxgy487lsx0kfd89287hjk0al8m6vrw")
-        (mozilla-patch "icecat-bug-1398021.patch"        "28855df568d8" "1kmq836gniplxpjnvq8lhbcc1aqi56al628r1mzdy94b5yb0lis3")
-        (mozilla-patch "icecat-bug-1388020.patch"        "e8ab2736499b" "0n28vcd65rxsyq3z22rfcfksryfndhm1i3g6ah3akg11jnagqf5v")
-        (mozilla-patch "icecat-CVE-2018-5125-pt4.patch"  "014877bf17ea" "0hk90pnf7h7kvidji6ydvva1zpyraipn03pjhvprdqr7k2fqzmsz")
-        (mozilla-patch "icecat-CVE-2018-5125-pt5.patch"  "5b3a5de48912" "1ifya05rcd34ryp9zawdacihhkkf2m0xn2q8m8c6v78bvxj0mgig")
-        (mozilla-patch "icecat-CVE-2018-5144.patch"      "1df9b4404acd" "1sd59vsarfsbh3vlrzrqv6n1ni7vxdzm83j6s6g0fygl1h8kwijg")
-        (mozilla-patch "icecat-bug-1430173-pt1.patch"    "9124c3972e2b" "13ns5yy39yzfx7lrkv4rgwdz6s6q0z4i09wkbxdvnkfsz17cd17i")
-        (mozilla-patch "icecat-bug-1430173-pt2.patch"    "9f6dc031be51" "0bv2p98z5ahp3x9wxnhwxn87g21djvzzp7jy55ik90hqixsbhwdl")
-        (mozilla-patch "icecat-CVE-2018-5131.patch"      "3102fbb97b32" "0kg0183v92gxjb9255xjwhxyd6gl77l9c0civx3040k975fybwlp")
-        (mozilla-patch "icecat-CVE-2018-5125-pt6.patch"  "4904c0f4a645" "0lsq62ynksy1fbw0m87f1d741fyvrrp1vrznx5hx0l2p4g4frhv3")
-        (mozilla-patch "icecat-CVE-2018-5125-pt7.patch"  "16b8073d5c30" "1dv94qqah1wjd3bxjvrkmjbb2f95d3d11zpm8mggdk52il575bwl")
-        (mozilla-patch "icecat-bug-1442127-pt1.patch"    "f931f85b09da" "02s380w8a73g4w2wm810lbigh4z4rrlfy10ywwhv4lpkbk8xg7pr")
-        (mozilla-patch "icecat-bug-1442127-pt2.patch"    "da5792b70f30" "116k9qja5ir9b3laazasp43f5jx59qq72nknmq5bn5v1ixya9r4l")
-        (mozilla-patch "icecat-CVE-2018-5125-pt8.patch"  "62b831df8269" "109pn0hqn7s27580glv4z7qv1pmjzii9szvf3wkn97k5wybrzgkx")
-        (mozilla-patch "icecat-bug-1442504.patch"        "8954ce68a364" "0bl65zw82bwqg0mmcri94pxqq6ibff7y5rclkzapb081p6yvf73q")
-        (mozilla-patch "icecat-CVE-2018-5125-pt9.patch"  "8a16f439117c" "108iarql6z7h1r4rlzac6n6lrzs78x7kcdbfa0b5dbr5xc66jmgb")
-        (mozilla-patch "icecat-bug-1426603.patch"        "ca0b92ecedee" "0dc3mdl4a3hrq4j384zjavf3splj6blv4masign710hk7svlgbhq")
-        (mozilla-patch "icecat-CVE-2018-5146.patch"      "494e5d5278ba" "1yb4lxjw499ppwhk31vz0vzl0cfqvj9d4jwqag7ayj53ybwsqgjr")
-        (mozilla-patch "icecat-CVE-2018-5147.patch"      "5cd5586a2f48" "10s774pwvj6xfk3kk6ivnhp2acc8x9sqq6na8z47nkhgwl2712i5")
-        (mozilla-patch "icecat-CVE-2018-5148.patch"      "c3e447e07077" "0gmwy631f8ip4gr1mpbjk8bx1n1748wdls5zq4y8hpmpnq5g1wyx")
-        (mozilla-patch "icecat-CVE-2018-5178.patch"      "17201199b18d" "1d0hcim1fwh0bklwpmnal1mv9d9kmyif1m15aj1nqkf1n3x4xc37")
-        (mozilla-patch "icecat-bug-1361699.patch"        "a07d6c3ff262" "1z8mjg2487r8pxi0x951v6fwwr696q84f6hlzimc3r7bn5ds9r83")
-        (mozilla-patch "icecat-CVE-2018-5150-pt01.patch" "7127ccf8f88c" "0m4my7aflpp0wlqilr2m4axd7k2fyrs7jqdcz2rrz5pwivz1anvd")
-        (mozilla-patch "icecat-bug-1444231.patch"        "57bd35fa8618" "0pl6x5amc5x6nhwl7qnmnff3jjjxmbs8r365bfzj58g7q5ihqwvf")
-        (mozilla-patch "icecat-CVE-2018-5150-pt02.patch" "2f3e1ccf1661" "0azl8g81kpc0w2xpjpgm1154ll12g0a8n6i7bl3s9nnrk2i26n74")
-        (mozilla-patch "icecat-CVE-2018-5159.patch"      "8ff2c4d68e36" "0kz1rqhnz8ca4z20hnpcafidhsrwhnm0h2gmlgchni33h8pisr1f")
-        (mozilla-patch "icecat-CVE-2018-5154.patch"      "b8c430253efd" "1arjcaps9axhxh5ff84n9bydhhzrihn7hbq7v69nvqwqrjp3lgg9")
-        (mozilla-patch "icecat-CVE-2018-5155.patch"      "05cadfa3ac39" "0q0vh7vy7x0l8jp6376fn10qljfp4mnp4m9zfn90j4m19pfl86a0")
-        (mozilla-patch "icecat-CVE-2018-5168.patch"      "48a678d7cb81" "1yfh7kxxxvqck2hpn98pwag4splyc6c9brc5haq28fp8x9r9qvlk")
-        (mozilla-patch "icecat-CVE-2018-5150-pt03.patch" "112032576872" "1x1hxyggbxlnlj0n9cbp03hjnfvm6cq8nqj0jizrd8cfyd5aig8p")
-        (mozilla-patch "icecat-CVE-2018-5150-pt04.patch" "ad9a885b0df4" "1hrk1q9mk59jww55g4lqmaflznk87x3vvjn2mxfgfbbjs8l1cyz4")
-        (mozilla-patch "icecat-bug-1452416.patch"        "f89ab96a2532" "1dqchxdyznhgyxhfq0hm0vg1p597hjqflfzigc7j3s5vxf9rg2nv")
-        (mozilla-patch "icecat-CVE-2018-5150-pt05.patch" "af885a1bd293" "1wfpqhm2dp4fsx6zbrncngsqz7g2x09b625zcighixrbpvybyww3")
-        (mozilla-patch "icecat-CVE-2018-5150-pt06.patch" "666fc84ec72d" "0lml2wqd4yqidhi364x8r90f78397k2y0kq5z5bv8l8j4bhcnb9v")
-        (search-patch  "icecat-CVE-2018-5157-and-CVE-2018-5158.patch")
-        (mozilla-patch "icecat-CVE-2018-5150-pt07.patch" "1ab40761a856" "1kgwypy7k5b33jwkni4025za4kcnv5m6klsx4wsswlixmljmkbc7")
-        (mozilla-patch "icecat-bug-1453339.patch"        "0edb8dca7087" "0b30pipqryh311sc97rcmwnx9n8qdlbbz90b2hkybjnprmbhfxrm")
-        (mozilla-patch "icecat-CVE-2018-5150-pt08.patch" "134c728799c1" "16hbwx6fx1hrddsyjjbd3z954ql3pg348xs13h9riyblq8crzmam")
-        (mozilla-patch "icecat-CVE-2018-5150-pt09.patch" "14eab155eaa8" "0wr4xgblxzk4c2gvlnpl7ic1196mrhry1hgwdl1jivq0ji5cbvbd")
-        (mozilla-patch "icecat-bug-1452619.patch"        "2b75d55ccf0e" "1g87aybw6ggv6hyk385bplv0lx63n020gwyq0d6d4pqld48hsm1i")
-        (mozilla-patch "icecat-CVE-2018-5156-pt1.patch"  "89857f35df29" "0gzi47svrw5ajdlm3i12193psm702zx70x5h1rwp4gb7gxh4m4d9")
-        (mozilla-patch "icecat-CVE-2018-5150-pt10.patch" "3f2ec03c0405" "0w02952dlxd2gmwghck2nm4rjjmc5ylg62bw6m1rvi35kcr134lr")
-        (mozilla-patch "icecat-CVE-2018-5183.patch"      "f729bf78fb3a" "0xkj6jwxwdqkvb5c7wi16b8cm8qrnlrd3s9jnd46jg03iykrx56f")
-        (mozilla-patch "icecat-CVE-2018-5188-pt01.patch" "eb896089db47" "10lppk4x2d3pim71a36ky1dmg08rs5ckfiljwvfnr1cw6934qxl4")
-        (mozilla-patch "icecat-CVE-2018-5188-pt02.patch" "2374dca97bde" "0y1g55wvj44nzb1qfkl271jcf8s1ik8lcl1785z0zim4qzn7qkpa")
-        (mozilla-patch "icecat-CVE-2018-5188-pt03.patch" "70b6298e0c9e" "0n5jfy6c421dkybk8m18vd61y95zz0r64g1p1zlya3fps5knfaqi")
-        (mozilla-patch "icecat-CVE-2018-12365-pt1.patch" "4ef79fe9b3b7" "1c32z1ki1i6xj1nbb0xlxwqnmz48ikmy8dmp37rkjz8ssn04wgfg")
-        (mozilla-patch "icecat-CVE-2018-12365-pt2.patch" "9ad16112044a" "0ayya67sx7avcb8bplfdxb92l9g4mjrb1s3hby283llhqv0ikg9b")
-        (mozilla-patch "icecat-CVE-2018-12359.patch"     "11d8a87fb6d6" "1rkmdk18llw0x1jakix75hlhy0hpsmlminnflagbzrzjli81gwm1")
-        (mozilla-patch "icecat-CVE-2018-5188-pt04.patch" "407b10ad1273" "16qzsfirw045xag96f1qvpdlibm8lwdj9l1mlli4n1vz0db91v9q")
-        (mozilla-patch "icecat-CVE-2018-6126.patch"      "e76e2e481b17" "0hnx13msjy28n3bpa2c24kpzalam4bdk5gnp0f9k671l48rs9yb3")
-        (mozilla-patch "icecat-CVE-2018-5188-pt05.patch" "2c75bfcd465c" "1pjinj8qypafqm2fk68s3hzcbzcijn09qzrpcxvzq6bl1yfc1xfd")
-        (mozilla-patch "icecat-CVE-2018-5188-pt06.patch" "042f80f3befd" "0av918kin4bkrq7gnjz0h9w8kkq8rk9l93250lfl5kqrinza1gsk")
-        (mozilla-patch "icecat-CVE-2018-5188-pt07+bugs-1455071+1433642+1456604+1458320.patch"
-                                                         "bb0451c9c4a0" "1lhm1b2a7c6jwhzsg3c830hfhp17p8j9zbcmgchpb8c5jkc3vw0x")
-        (mozilla-patch "icecat-CVE-2018-5188-pt08.patch" "8189b262e3b9" "13rh86ddwmj1bhv3ibbil3sv5xbqq1c9v1czgbsna5hxxkzc1y3b")
-        (mozilla-patch "icecat-CVE-2018-5188-pt09.patch" "9f81ae3f6e1d" "05vfg8a8jrzd93n1wvncmvdmqgf9cgsl8ryxgjs3032gbbjkga7q")
-        (mozilla-patch "icecat-CVE-2018-12360.patch"     "face7a3dd5d7" "0jclw30mf693w8lrmvn0iankggj21nh4j3zh51q5363rj5xncdzx")
-        (mozilla-patch "icecat-CVE-2018-5188-pt10.patch" "7afb58c046c8" "1r0569r76712x7x1sw6xr0x06ilv6iw3fncb0f8r8b9mp6wrpx34")
-        (mozilla-patch "icecat-CVE-2018-12362-pt1.patch" "f1a745f8c42d" "11q73pb7a8f09xjzil4rhg5nr49zrnz1vb0prni0kqvrnppf5s40")
-        (mozilla-patch "icecat-CVE-2018-12362-pt2.patch" "1f9a430881cc" "0f79rv7njliqxx33z07n60b50jg0a596d1km7ayz2hivbl2d0168")
-        (mozilla-patch "icecat-CVE-2018-5188-pt11.patch" "28f4fc0a5141" "1a8f9z6c80in8ccj82ysdrcr2lqypp29l4acs50kwncm0c0b01zl")
-        (mozilla-patch "icecat-CVE-2018-12363.patch"     "ad5a53a1d2b1" "0rhl4r39ydb3lkfp5pkwvhhzqgfh33s9r7b7jccgkrx6f13xyq78")
-        (mozilla-patch "icecat-CVE-2018-5188-pt12.patch" "0ddfc03c0454" "1b0xw2kj9765lvpl8iwr3wwcz40bdfp3dp4y9f546a61qsi9q9d6")
-        (mozilla-patch "icecat-CVE-2018-5156-pt2.patch"  "dbf36189a364" "1awbyhy0r79i03sns2p0m78f9hb6c7kp4hwia2khx4qszlsr4j95")
-        (mozilla-patch "icecat-CVE-2018-5188-pt13.patch" "32509dfde003" "0cc3c92dgf5qynk093prq610c9x815l2fa24ddrw9czdzbwblsdq")
-        (mozilla-patch "icecat-bug-1462912.patch"        "f18535a212da" "0zkqz9il89f1s1yrp5c6hj6kysy2x02iy50vgwdj30lr56gkpzmk")
-        (mozilla-patch "icecat-CVE-2018-5188-pt14.patch" "e8e9e1ef79f2" "0dc8p6fsppq3bhbpmp41f8mjxbr31pvgpga0a73dqdaicq5ydgj4")
-        (search-patch  "icecat-bug-1413868-pt1.patch")
-        (mozilla-patch "icecat-CVE-2018-5188-pt15.patch" "9d4d31b2630d" "1lcbmsyi09kp80h1jgxj5l45zl24xn22h1lq7drbyjxsn1kggq4g")
-        (mozilla-patch "icecat-CVE-2018-12366-pt1.patch" "edf2c7dff493" "06xmyk7nm54cm9m6qc59wz8cxxfa5r25mf2xzdzy74iq5hwa1ac8")
-        (mozilla-patch "icecat-CVE-2018-5188-pt16.patch" "05549a4d1b80" "10q68cllshmmhlrbirm9h4gyc3ffrcpsxihfpcbxh90nv2h16jci")
-        (mozilla-patch "icecat-CVE-2018-12364.patch"     "67b2d8924841" "197riigbb6l30959pygr0zlv7vaims78dg1mh0pg33pa7cbna0ds")
-        (mozilla-patch "icecat-CVE-2018-12366-pt2.patch" "528d4d997bb3" "0f375i96a404dkn0fanmd9pgfj3wyrhjfc5dwslw2s44gwfjhljb")
-        (mozilla-patch "icecat-bug-1369771.patch"        "fab16ad7f256" "0kd8qm04sjgfgfg8yw3ivcxazb1d7v430g86chw4n64qybsh9ka3")
-        (mozilla-patch "icecat-CVE-2018-5188-pt17.patch" "068e249d02b4" "1iy9by1mg5qhp8502h31m8zm99aq2hx0c5n3hadd5pk11lfnq6ll")
-        (mozilla-patch "icecat-bug-1413868-pt2.patch"    "755067c14b06" "089dwqwzcdg1l6aimi0i65q4dgb2iny5h8yjx63h9zgv77n0700a")))
+        (search-patch  "icecat-avoid-bundled-libraries.patch")
+        (search-patch  "icecat-use-system-graphite2+harfbuzz.patch")
+        (search-patch  "icecat-use-system-media-libs.patch")
+        (mozilla-patch "icecat-CVE-2018-12385.patch"      "80a4a7ef2813" "1vgcbimpnfjqj934v0cryq1g13xac3wfmd4jyhcb5s60x8xyssf5")
+        (search-patch  "icecat-CVE-2018-12383.patch")
+        (mozilla-patch "icecat-bug-1489744.patch"         "6546ee839d30" "11mhvj77r789b428bfxqq5wdx8yr7lbrdjzr8qjj6fw197pldn51")
+        (mozilla-patch "icecat-CVE-2018-12386.patch"      "4808fcb2e6ca" "05sc881l7sh8bag8whd2ggdn198lskqcxq8f41scfpqscw6xs5d5")
+        (mozilla-patch "icecat-CVE-2018-12387.patch"      "b8f5c37486e1" "0lvmbh126m695kgdbasy1y5xh9n1j08cwdhn071mgvj6yn8cns5z")
+        (mozilla-patch "icecat-bug-1464751.patch"         "d5d00faf0465" "1mj7dbb06brwrk0mvap0z4lfl2hwz1cj6dwjvdrisxm046pdw98i")
+        (mozilla-patch "icecat-bug-1472538.patch"         "11462f2b98f2" "1nxgh0plzilylx8r73r7d74pv66qwjqxmd7nqii33p0snl2jjfzs")
+        (mozilla-patch "icecat-bug-1478685.patch"         "098585dc86fc" "1b0x4qdh6isvffmibvc8ad8z62m3iky9q6jq0z6gyvn8q252cqal")
+        (mozilla-patch "icecat-bug-1486080.patch"         "3f8d57d936ea" "0pz2c18wcgj44v0j8my9xbm90m4bsjcvzmavj569fi8bh6s6zz8p")
+        (mozilla-patch "icecat-bug-1423278.patch"         "878ceaee5634" "0i47s5nvrx9vqbnj6s9y9f4ffww20p8nviqa6frg676y1188xlyl")
+        (mozilla-patch "icecat-bug-1442010.patch"         "87be1b98ec9a" "15f4l18c7hz9aqn89gg3dwmdidfwgn10dywgpzydm8mps45amx7j")
+        (mozilla-patch "icecat-bug-1484559.patch"         "99e58b5307ce" "02fdgbliwzi2r2376wg6k1rky1isfka0smac4ii2cll01jhpfrn6")
+        (mozilla-patch "icecat-bug-1487098.patch"         "f25ce451a492" "18nzg39iyxza1686180qk9cc88l5j2hf1h35d62lrqmdgd9vcj33")
+        (mozilla-patch "icecat-bug-1484905.patch"         "35c26bc231df" "0qh8d4z6y03h5xh7djci26a01l6zq667lg2k11f6zzg7z2j0h67x")
+        (mozilla-patch "icecat-bug-1488061.patch"         "050d0cfa8e3d" "05ql798ynbyz5pvyri4b95j4ixmgnny3zl7sd2ckfrrbm9mxh627")
+        (mozilla-patch "icecat-bug-1434963-pt1.patch"     "1e6dad87efed" "1v00a6cmgswjk54041jyv1ib129fxshpzwk6mn6lr0v5hylk3bx9")
+        (mozilla-patch "icecat-bug-1434963-pt2.patch"     "6558c46df9ea" "0vdy9dm9w5k1flhcfxwvvff0aa415b5mgmmq5r37i83686768xfb")
+        (mozilla-patch "icecat-bug-1434963-pt3.patch"     "686fcfa8abd6" "0ihqr11aq4b0y7mx7bwn8yzn25mv3k2gdphm951mj1g85qg35ann")
+        (mozilla-patch "icecat-bug-1491132.patch"         "14120e0c74d6" "188c5fbhqqhmlk88p70l6d97skh7xy4jhqdby1ri3h9ix967515j")))
       (modules '((guix build utils)))
       (snippet
        '(begin
@@ -600,15 +535,24 @@ security standards.")
                       ;; FIXME: A script from the bundled nspr is used.
                       ;;"nsprpub"
                       ;;
-                      ;; TODO: Use system media libraries.  Waiting for:
+                      ;; FIXME: With the update to IceCat 60, using system NSS
+                      ;;        broke certificate validation.  See
+                      ;;        <https://bugs.gnu.org/32833>.  For now, we use
+                      ;;        the bundled NSPR and NSS.  TODO: Investigate,
+                      ;;        and try to unbundle these libraries again.
+                      ;; UNBUNDLE-ME! "security/nss"
+                      ;;
+                      ;; TODO: Use more system media libraries.  See:
                       ;; <https://bugzilla.mozilla.org/show_bug.cgi?id=517422>
-                      ;;   * libogg
-                      ;;   * libtheora
-                      ;;   * libvorbis
-                      ;;   * libtremor (not yet in guix)
+                      ;;   * libtheora: esr60 wants v1.2, not yet released.
+                      ;;   * soundtouch: avoiding the bundled library would
+                      ;;     result in some loss of functionality.  There's
+                      ;;     also an issue with exception handling
+                      ;;     configuration.  It seems that this is needed in
+                      ;;     some moz.build:
+                      ;;       DEFINES['ST_NO_EXCEPTION_HANDLING'] = 1
                       ;;   * libopus
                       ;;   * speex
-                      ;;   * soundtouch (not yet in guix)
                       ;;
                       "modules/freetype2"
                       "modules/zlib"
@@ -616,8 +560,10 @@ security standards.")
                       "ipc/chromium/src/third_party/libevent"
                       "media/libjpeg"
                       "media/libvpx"
-                      "security/nss"
-                      "gfx/cairo"
+                      "media/libogg"
+                      "media/libvorbis"
+                      ;; "media/libtheora" ; wants theora-1.2, not yet released
+                      "media/libtremor"
                       "gfx/harfbuzz"
                       "gfx/graphite2"
                       "js/src/ctypes/libffi"
@@ -633,7 +579,6 @@ security standards.")
     (inputs
      `(("alsa-lib" ,alsa-lib)
        ("bzip2" ,bzip2)
-       ("cairo" ,cairo)
        ("cups" ,cups)
        ("dbus-glib" ,dbus-glib)
        ("gdk-pixbuf" ,gdk-pixbuf)
@@ -648,29 +593,37 @@ security standards.")
        ("libcanberra" ,libcanberra)
        ("libgnome" ,libgnome)
        ("libjpeg-turbo" ,libjpeg-turbo)
+       ("libogg" ,libogg)
+       ;; ("libtheora" ,libtheora) ; wants theora-1.2, not yet released
+       ("libvorbis" ,libvorbis)
        ("libxft" ,libxft)
-       ("libevent" ,libevent-2.0)
+       ("libevent" ,libevent)
        ("libxinerama" ,libxinerama)
        ("libxscrnsaver" ,libxscrnsaver)
        ("libxcomposite" ,libxcomposite)
        ("libxt" ,libxt)
        ("libffi" ,libffi)
-       ("ffmpeg" ,ffmpeg-3.4)
+       ("ffmpeg" ,ffmpeg)
        ("libvpx" ,libvpx)
        ("icu4c" ,icu4c)
        ("pixman" ,pixman)
        ("pulseaudio" ,pulseaudio)
        ("mesa" ,mesa)
        ("mit-krb5" ,mit-krb5)
-       ("nspr" ,nspr)
-       ("nss" ,nss)
+       ;; See <https://bugs.gnu.org/32833>
+       ;;   and related comments in the 'snippet' above.
+       ;; UNBUNDLE-ME! ("nspr" ,nspr)
+       ;; UNBUNDLE-ME! ("nss" ,nss)
        ("sqlite" ,sqlite)
        ("startup-notification" ,startup-notification)
        ("unzip" ,unzip)
        ("zip" ,zip)
        ("zlib" ,zlib)))
     (native-inputs
-     `(("perl" ,perl)
+      ;; Icecat 60 checkes for rust>=1.24
+     `(("rust" ,rust-1.24)
+       ("cargo" ,rust-1.24 "cargo")
+       ("perl" ,perl)
        ("python" ,python-2) ; Python 3 not supported
        ("python2-pysqlite" ,python2-pysqlite)
        ("yasm" ,yasm)
@@ -687,11 +640,12 @@ security standards.")
        ;; practice somehow.  See <http://hydra.gnu.org/build/378133>.
        #:validate-runpath? #f
 
+       #:imported-modules ,%cargo-build-system-modules ;for `generate-checksums'
+
        #:configure-flags '("--enable-default-toolkit=cairo-gtk3"
 
                            "--with-distribution-id=org.gnu"
 
-                           "--enable-gio"
                            "--enable-startup-notification"
                            "--enable-pulseaudio"
 
@@ -701,7 +655,9 @@ security standards.")
                            "--disable-maintenance-service"
                            "--disable-eme"
                            "--disable-gconf"
-                           "--disable-gnomeui"
+
+                           ;; Stylo requires LLVM/clang.  For now, disable it.
+                           "--disable-stylo"
 
                            ;; Building with debugging symbols takes ~5GiB, so
                            ;; disable it.
@@ -717,14 +673,20 @@ security standards.")
                            "--with-system-bz2"
                            "--with-system-jpeg"        ; must be libjpeg-turbo
                            "--with-system-libevent"
+                           "--with-system-ogg"
+                           "--with-system-vorbis"
+                           ;; "--with-system-theora" ; wants theora-1.2, not yet released
                            "--with-system-libvpx"
                            "--with-system-icu"
-                           "--with-system-nspr"
-                           "--with-system-nss"
+                           
+                           ;; See <https://bugs.gnu.org/32833>
+                           ;;   and related comments in the 'snippet' above.
+                           ;; UNBUNDLE-ME! "--with-system-nspr"
+                           ;; UNBUNDLE-ME! "--with-system-nss"
+                           
                            "--with-system-harfbuzz"
                            "--with-system-graphite2"
                            "--enable-system-pixman"
-                           "--enable-system-cairo"
                            "--enable-system-ffi"
                            "--enable-system-hunspell"
                            "--enable-system-sqlite"
@@ -774,6 +736,27 @@ security standards.")
     'avcodec', 'avutil', 'pulse' ]\n\n"
                               all)))
             #t))
+         (replace 'bootstrap
+           (lambda _
+             (invoke "sh" "-c" "autoconf old-configure.in > old-configure")))
+         (add-after 'patch-source-shebangs 'patch-cargo-checksums
+           (lambda _
+             (use-modules (guix build cargo-build-system))
+             (let ((null-file "/dev/null")
+                   (null-hash "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855"))
+               (substitute* '("Cargo.lock" "servo/Cargo.lock")
+                 (("(\"checksum .* = )\".*\"" all name)
+                  (string-append name "\"" null-hash "\"")))
+               (for-each
+                (lambda (filename)
+                  (delete-file filename)
+                  (let ((dir (dirname filename)))
+                    (display (string-append
+                              "patch-cargo-checksums: generate-checksums for "
+                              dir "\n"))
+                    (generate-checksums dir null-file)))
+                (find-files "third_party/rust" ".cargo-checksum.json")))
+             #t))
          (replace
           'configure
           ;; configure does not work followed by both "SHELL=..." and
diff --git a/gnu/packages/golang.scm b/gnu/packages/golang.scm
index fd4c362d36..7c026ff5f0 100644
--- a/gnu/packages/golang.scm
+++ b/gnu/packages/golang.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Matthew Jordan <matthewjordandevops@yandex.com>
 ;;; Copyright © 2016 Andy Wingo <wingo@igalia.com>
 ;;; Copyright © 2016 Ludovic Courtès <ludo@gnu.org>
@@ -12,6 +12,7 @@
 ;;; Copyright © 2018 Tomáš Čech <sleep_walker@gnu.org>
 ;;; Copyright © 2018 Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
 ;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz>
+;;; Copyright @ 2018 Katherine Cox-Buday <cox.katherine.e@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -76,6 +77,10 @@
                   (guix build utils)
                   (srfi srfi-1))
        #:tests? #f ; Tests are run by the all.bash script.
+       ,@(if (string-prefix? "aarch64-linux" (or (%current-system)
+                                                 (%current-target-system)))
+             '(#:system "armhf-linux")
+             '())
        #:phases
        (modify-phases %standard-phases
          (delete 'configure)
@@ -212,7 +217,7 @@ programming language designed primarily for systems programming.  Go is a
 compiled, statically typed language in the tradition of C and C++, but adds
 garbage collection, various safety features, and concurrent programming features
 in the style of communicating sequential processes (@dfn{CSP}).")
-    (supported-systems '("x86_64-linux" "i686-linux" "armhf-linux"))
+    (supported-systems '("x86_64-linux" "i686-linux" "armhf-linux" "aarch64-linux"))
     (license license:bsd-3)))
 
 (define-public go-1.9
@@ -272,6 +277,15 @@ in the style of communicating sequential processes (@dfn{CSP}).")
                     (string-append
                      "\"-Wl,-rpath=" gcclib "\", \"-lgcc_s\", ")))
 
+                 ;; XXX Commit 65fa2b615b72c1fa61a7 in the Go repo.  We do this
+                 ;; without a patch because ((guix packages) patch-and-repack)
+                 ;; resets file mtimes, and parts of Go's test suite rely on
+                 ;; those timestamps.
+                 ;; <https://github.com/golang/go/issues/26369>
+                 (substitute* "cmd/internal/objfile/elf.go"
+                   (("PT_LOAD")
+                     "PT_LOAD && p.Flags&elf.PF_X != 0"))
+
                  ;; Disable failing tests: these tests attempt to access
                  ;; commands or network resources which are neither available
                  ;; nor necessary for the build to succeed.
@@ -385,11 +399,11 @@ in the style of communicating sequential processes (@dfn{CSP}).")
        ,@(package-native-inputs go-1.4)))
     (supported-systems %supported-systems)))
 
-(define-public go-1.10
+(define-public go-1.11
   (package
     (inherit go-1.9)
     (name "go")
-    (version "1.10.4")
+    (version "1.11.1")
     (source
      (origin
        (method url-fetch)
@@ -397,7 +411,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
                            name version ".src.tar.gz"))
        (sha256
         (base32
-         "10ap5pan71y2hdwzv4cg8wx4sy8fkcz5520rm1ldjg25xmjlkr3g"))))
+         "05qivf2f59pv4bfrmdr4m0xvswkmvvl9c5a2h5dy45g2k8b8r3sm"))))
     (arguments
      (substitute-keyword-arguments (package-arguments go-1.9)
        ((#:phases phases)
@@ -412,18 +426,31 @@ in the style of communicating sequential processes (@dfn{CSP}).")
                        (string-append (assoc-ref inputs "tzdata") "/share/zoneinfo"))
                       (output (assoc-ref outputs "out")))
 
-                 ;; Removing net/ tests, which fail when attempting to access
-                 ;; network resources not present in the build container.
                  (for-each delete-file
+                           ;; Removing net/ tests, which fail when attempting to access
+                           ;; network resources not present in the build container.
                            '("net/listen_test.go"
                              "net/parse_test.go"
-                             "net/cgo_unix_test.go"))
+                             "net/cgo_unix_test.go"
+                             ;; A side effect of these test scripts is testing
+                             ;; cgo. Attempts at using cgo flags and
+                             ;; directives with these scripts as specified
+                             ;; here (https://golang.org/cmd/cgo/) have not
+                             ;; worked. The tests continue to state that they
+                             ;; can not find crt1.o despite being present.
+                             "cmd/go/testdata/script/list_compiled_imports.txt"
+                             "cmd/go/testdata/script/mod_case_cgo.txt"
+                             ;; https://github.com/golang/go/issues/24884
+                             "os/user/user_test.go"))
 
                  (substitute* "os/os_test.go"
                    (("/usr/bin") (getcwd))
                    (("/bin/pwd") (which "pwd"))
                    (("/bin/sh") (which "sh")))
 
+                 (substitute* "cmd/vendor/golang.org/x/sys/unix/syscall_unix_test.go"
+                   (("/usr/bin") "/tmp"))
+
                  ;; Add libgcc to runpath
                  (substitute* "cmd/link/internal/ld/lib.go"
                    (("!rpath.set") "true"))
@@ -494,10 +521,7 @@ in the style of communicating sequential processes (@dfn{CSP}).")
                ;; Tell the build system where to find the bootstrap Go.
                (let ((go  (assoc-ref inputs "go")))
                  (setenv "GOROOT_BOOTSTRAP" go)
-                 (setenv "GOGC" "400")
-                 ;; Go 1.10 tries to write to $HOME in a test
-                 (setenv "HOME" "/tmp")
-                 #t)))))))))
+                 (setenv "GOGC" "400"))))))))))
 
 (define-public go go-1.9)
 
diff --git a/gnu/packages/gprolog.scm b/gnu/packages/gprolog.scm
index b27b080ca7..166bf33294 100644
--- a/gnu/packages/gprolog.scm
+++ b/gnu/packages/gprolog.scm
@@ -27,15 +27,18 @@
 (define-public gprolog
   (package
     (name "gprolog")
-    (version "1.4.4")
+    (version "1.4.5")
     (source
-     (origin
-      (method url-fetch)
-      (uri (string-append "mirror://gnu/gprolog/gprolog-" version
-                          ".tar.gz"))
-      (sha256
-       (base32
-        "13miyas47bmijmadm68cbvb21n4s156gjafz7kfx9brk9djfkh0q"))))
+      (origin
+        (method url-fetch)
+        ;; Recent versions are not hosted on the GNU mirrors.
+        (uri (list (string-append "http://gprolog.org/gprolog-" version
+                                  ".tar.gz")
+                   (string-append "mirror://gnu/gprolog/gprolog-" version
+                                  ".tar.gz")))
+        (sha256
+         (base32
+          "0z4cc42n3k6i35b8mr816iwsvrpxshw6d7dgz6s2h1hy0l7g1p5z"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags
diff --git a/gnu/packages/graph.scm b/gnu/packages/graph.scm
index 245ee8f956..cb314719b7 100644
--- a/gnu/packages/graph.scm
+++ b/gnu/packages/graph.scm
@@ -224,6 +224,7 @@ lines.")
     (propagated-inputs
      `(("python-decorator" ,python-decorator)
        ("python-nbformat" ,python-nbformat)
+       ("python-pandas" ,python-pandas)
        ("python-pytz" ,python-pytz)
        ("python-requests" ,python-requests)
        ("python-six" ,python-six)))
diff --git a/gnu/packages/graphics.scm b/gnu/packages/graphics.scm
index 9c2869c12b..c3c1a4a580 100644
--- a/gnu/packages/graphics.scm
+++ b/gnu/packages/graphics.scm
@@ -406,7 +406,7 @@ visual effects work for film.")
 (define-public openscenegraph
   (package
     (name "openscenegraph")
-    (version "3.6.2")
+    (version "3.6.3")
     (source
      (origin
        (method git-fetch)
@@ -415,8 +415,8 @@ visual effects work for film.")
              (commit (string-append "OpenSceneGraph-" version))))
        (sha256
         (base32
-         "03jk6lclyd4biniaw04w7j0z1spkm69f1c19i37b8v9x3zv1p1id"))
-       (file-name (string-append name "-" version "-checkout"))))
+         "0h32z15sa8sbq276j0iib0n707m8bs4p5ji9z2ah411446paad9q"))
+       (file-name (git-file-name name version))))
     (properties
      `((upstream-name . "OpenSceneGraph")))
     (build-system cmake-build-system)
@@ -437,8 +437,6 @@ visual effects work for film.")
        ("jasper" ,jasper)
        ("librsvg" ,librsvg)
        ("libxrandr" ,libxrandr)
-       ("pth" ,pth)
-       ("qtbase" ,qtbase)
        ("ffmpeg" ,ffmpeg)
        ("mesa" ,mesa)))
     (synopsis "High performance real-time graphics toolkit")
@@ -707,20 +705,20 @@ and understanding different BRDFs (and other component functions).")
        (list (string-append "--x-includes=" (assoc-ref %build-inputs "libx11")
                             "/include")
              (string-append "--x-libraries=" (assoc-ref %build-inputs "libx11")
-                            "/lib"))
+                            "/lib")
+             "--disable-examples")
        #:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'autoreconf
+         (replace 'bootstrap
            (lambda _
              ;; let's call configure from configure phase and not now
              (substitute* "autogen.sh" (("./configure") "# ./configure"))
-             (zero? (system* "sh" "autogen.sh")))))))
+             (invoke "sh" "autogen.sh"))))))
     (native-inputs
      `(("pkg-config" ,pkg-config)
        ("libtool" ,libtool)
        ("autoconf" ,autoconf)
-       ("automake" ,automake)
-       ("bash" ,bash)))
+       ("automake" ,automake)))
     (inputs
      `(("libx11" ,libx11)
        ("freetype" ,freetype)
diff --git a/gnu/packages/graphviz.scm b/gnu/packages/graphviz.scm
index 09f46fab84..569923d4e0 100644
--- a/gnu/packages/graphviz.scm
+++ b/gnu/packages/graphviz.scm
@@ -220,17 +220,18 @@ be used either as a standalone application, or as a python library.")
 (define-public python-pydot
   (package
     (name "python-pydot")
-    (version "1.2.3")
+    (version "1.2.4")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pydot" version))
        (sha256
         (base32
-         "00imlz0033dygb9gdag1xr0cybn33gk5jsdi9ffbszzr97rd7dgd"))))
+         "1dhy4jpp646jslh2yks6klwwbaxcs905byyny880gl1iap8y5llj"))))
     (build-system python-build-system)
-    ;; FIXME: No tests in PyPi release tarball.
-    (arguments '(#:tests? #f))
+    (native-inputs
+     ;; For tests.
+     `(("python-chardet" ,python-chardet)))
     (propagated-inputs
      `(("python-pyparsing" ,python-pyparsing)))
     (home-page "https://github.com/erocarrera/pydot")
diff --git a/gnu/packages/gstreamer.scm b/gnu/packages/gstreamer.scm
index 21acd9f150..f43a0fc2f5 100644
--- a/gnu/packages/gstreamer.scm
+++ b/gnu/packages/gstreamer.scm
@@ -227,6 +227,7 @@ for the GStreamer multimedia library.")
        ("gdk-pixbuf" ,gdk-pixbuf)
        ("gst-plugins-base" ,gst-plugins-base)
        ("jack" ,jack-1)
+       ("lame" ,lame)
        ("libavc1394" ,libavc1394)
        ("libcaca" ,libcaca)
        ("libdv" ,libdv)
@@ -236,10 +237,12 @@ for the GStreamer multimedia library.")
        ("libshout" ,libshout)
        ("libsoup" ,libsoup)
        ("libvpx" ,libvpx)
+       ("mpg123" ,mpg123)
        ("orc" ,orc)
        ("pulseaudio" ,pulseaudio)
        ("speex" ,speex)
        ("taglib" ,taglib)
+       ("twolame" ,twolame)
        ("wavpack" ,wavpack)))
     (native-inputs
      `(("glib:bin" ,glib "bin")
@@ -320,7 +323,6 @@ developers consider to have good quality code and correct functionality.")
        ("libxml2" ,libxml2)
        ("lrdf" ,lrdf)
        ("mesa" ,mesa)
-       ("mpg123" ,mpg123)
        ("neon" ,neon)
        ("openal" ,openal)
        ("openexr" ,openexr)
@@ -357,13 +359,10 @@ par compared to the rest.")
     (inputs
      `(("gst-plugins-base" ,gst-plugins-base)
        ("liba52" ,liba52)
-       ("lame" ,lame)
        ("libcdio" ,libcdio)
-       ("twolame" ,twolame)
        ("libmpeg2" ,libmpeg2)
        ("libdvdread" ,libdvdread)
        ("libx264" ,libx264)
-       ("mpg123" ,mpg123)
        ;; TODO:
        ;; * opencore-amr (for the AMR-NB decoder and encoder and the
        ;;   AMR-WB decoder) <http://sourceforge.net/projects/opencore-amr/>
diff --git a/gnu/packages/gtk.scm b/gnu/packages/gtk.scm
index 5eb03a0186..cec10504c5 100644
--- a/gnu/packages/gtk.scm
+++ b/gnu/packages/gtk.scm
@@ -469,7 +469,11 @@ highlighting and other features typical of a source code editor.")
              ;; ERROR:pixbuf-jpeg.c:74:test_type9_rotation_exif_tag:
              ;; assertion failed (error == NULL): Data differ
              ;; (gdk-pixbuf-error-quark, 0)
-             ((".*'pixbuf-jpeg'.*") ""))
+             ((".*'pixbuf-jpeg'.*") "")
+             ;; Extend the timeout of the test suite.
+             ;; TODO: Check upstreaming effort:
+             ;; https://gitlab.gnome.org/GNOME/gdk-pixbuf/merge_requests/21
+             (("300") "1800"))
            #t))
         (add-before 'configure 'aid-install-script
           (lambda* (#:key outputs #:allow-other-keys)
@@ -774,54 +778,26 @@ application suites.")
 (define-public guile-cairo
   (package
     (name "guile-cairo")
-    (version "1.4.1")
+    (version "1.10.0")
     (source (origin
               (method url-fetch)
-              (uri (string-append
-                    "http://download.gna.org/guile-cairo/guile-cairo-"
-                    version
-                    ".tar.gz"))
+              (uri (string-append "mirror://savannah/guile-cairo/guile-cairo-"
+                                  version ".tar.gz"))
               (sha256
                (base32
-                "1f5nd9n46n6cwfl1byjml02q3y2hgn7nkx98km1czgwarxl7ws3x"))))
+                "0p6xrhf2k6n5dybn88050za7h90gnd7534n62l53vsca187pwgdf"))
+              (modules '((guix build utils)))
+              (snippet
+               (begin
+                 '(begin
+                    ;; Install Scheme files in …/guile/site/X.Y.
+                    (substitute* (find-files "." "^Makefile\\.in$")
+                      (("^(.*)dir = (.*)/guile/site(.*)" _ name prefix suffix)
+                       (string-append name "dir = " prefix
+                                      "/guile/site/@GUILE_EFFECTIVE_VERSION@"
+                                      suffix)))
+                    #t)))))
     (build-system gnu-build-system)
-    (arguments
-     '(#:modules ((guix build utils)
-                  (guix build gnu-build-system)
-                  (ice-9 popen)
-                  (ice-9 rdelim))
-
-       #:phases (modify-phases %standard-phases
-                  (add-before 'configure 'set-module-directory
-                    (lambda* (#:key outputs #:allow-other-keys)
-                      ;; Install modules under $out/share/guile/site/2.0.
-                      (let ((out (assoc-ref outputs "out"))
-                            (effective
-                             (read-line
-                              (open-pipe* OPEN_READ "guile" "-c"
-                                          "(display (effective-version))"))))
-                        (substitute* "Makefile.in"
-                          (("scmdir = ([[:graph:]]+).*" _ value)
-                           (string-append "scmdir = " value "/" effective "\n")))
-                        (substitute* "cairo/Makefile.in"
-                          (("moduledir = ([[:graph:]]+).*" _ value)
-                           (string-append "moduledir = "
-                                          "$(prefix)/share/guile/site/"
-                                          effective "/cairo\n'")))
-                        #t)))
-                  (add-after 'install 'install-missing-file
-                    (lambda* (#:key outputs #:allow-other-keys)
-                      ;; By default 'vector-types.scm' is not installed, so do
-                      ;; it here.
-                      (let ((out (assoc-ref outputs "out"))
-                            (effective
-                             (read-line
-                              (open-pipe* OPEN_READ "guile" "-c"
-                                          "(display (effective-version))"))))
-                        (install-file "cairo/vector-types.scm"
-                                      (string-append out "/share/guile/site/"
-                                                     effective "/cairo"))
-                        #t))))))
     (inputs
      `(("guile-lib" ,guile-lib)
        ("expat" ,expat)
@@ -1579,12 +1555,11 @@ glass artworks done by Venicians glass blowers.")
      `(("intltool" ,intltool)
        ("pkg-config" ,pkg-config)))
     (inputs
-     `(("enchant" ,enchant)
-       ("gobject-introspection" ,gobject-introspection)
+     `(("gobject-introspection" ,gobject-introspection)
        ("gtk+" ,gtk+)
        ("pango" ,pango)))
     (propagated-inputs
-     `(("enchant" ,enchant))) ; gtkspell3-3.0.pc refers to it.
+     `(("enchant" ,enchant-1.6)))          ;gtkspell3-3.0.pc refers to it
     (home-page "http://gtkspell.sourceforge.net")
     (synopsis "Spell-checking addon for GTK's TextView widget")
     (description
diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm
index 0333c25255..bf2f2a14a4 100644
--- a/gnu/packages/guile.scm
+++ b/gnu/packages/guile.scm
@@ -19,6 +19,7 @@
 ;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com>
 ;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2018 Pierre-Antoine Rouby <pierre-antoine.rouby@inria.fr>
+;;; Copyright © 2018 Eric Bavier <bavier@member.fsf.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -224,6 +225,20 @@ without requiring the source code to be rewritten.")
    (home-page "https://www.gnu.org/software/guile/")
    (license license:lgpl3+)))
 
+(define-public guile-2.0.13
+  ;; For testing a "minimal" Guix
+  (hidden-package
+   (package (inherit guile-2.0)
+     (name "guile")
+     (version "2.0.13")
+     (source (origin
+               (method url-fetch)
+               (uri (string-append "mirror://gnu/guile/guile-" version
+                                   ".tar.xz"))
+               (sha256
+                (base32
+                 "12yqkr974y91ylgw6jnmci2v90i90s7h9vxa4zk0sai8vjnz4i1p")))))))
+
 (define-public guile-2.2
   (package (inherit guile-2.0)
     (name "guile")
@@ -286,7 +301,30 @@ without requiring the source code to be rewritten.")
                                                 ;  when heavily loaded)
 
 (define-public guile-next
-  (deprecated-package "guile-next" guile-2.2))
+  ;; This is the upcoming Guile 3.0, with JIT support.
+  (let ((commit "6f3357b0df64c4be17e72079864c09a542f1c779")
+        (revision "1"))
+    (package
+      (inherit guile-2.2)
+      (name "guile-next")
+      (version "2.9.1")
+      (source (origin
+                (inherit (package-source guile-2.2))
+                (uri (string-append "https://alpha.gnu.org/gnu/guile/guile-"
+                                    version ".tar.xz"))
+                (sha256
+                 (base32
+                  "0iba93yqn6mvgid0rfsrg4amym36pg9m8cqdplxsy222blrj9gh1"))))
+      (native-search-paths
+       (list (search-path-specification
+              (variable "GUILE_LOAD_PATH")
+              (files '("share/guile/site/3.0")))
+             (search-path-specification
+              (variable "GUILE_LOAD_COMPILED_PATH")
+              (files '("lib/guile/3.0/site-ccache"
+                       "share/guile/site/3.0")))))
+      (properties '((ftp-server . "alpha.gnu.org")
+                    (upstream-name . "guile"))))))
 
 (define (make-guile-readline guile)
   (package
@@ -1097,6 +1135,9 @@ Guile's foreign function interface.")
      "This package provides Guile bindings to the SQLite database system.")
     (license license:gpl3+)))
 
+(define-public guile2.0-sqlite3
+  (package-for-guile-2.0 guile-sqlite3))
+
 (define-public haunt
   (package
     (name "haunt")
@@ -1115,13 +1156,15 @@ Guile's foreign function interface.")
        #:tests? #f ; test suite is non-deterministic :(
        #:phases (modify-phases %standard-phases
                   (add-after 'install 'wrap-haunt
-                    (lambda* (#:key outputs #:allow-other-keys)
+                    (lambda* (#:key inputs outputs #:allow-other-keys)
                       ;; Wrap the 'haunt' command to refer to the right
                       ;; modules.
                       (let* ((out  (assoc-ref outputs "out"))
                              (bin  (string-append out "/bin"))
                              (site (string-append
-                                    out "/share/guile/site")))
+                                    out "/share/guile/site"))
+                             (deps (list (assoc-ref inputs "guile-reader")
+                                         (assoc-ref inputs "guile-commonmark"))))
                         (match (scandir site)
                           (("." ".." version)
                            (let ((modules (string-append site "/" version))
@@ -1130,9 +1173,19 @@ Guile's foreign function interface.")
                                                     "/site-ccache")))
                              (wrap-program (string-append bin "/haunt")
                                `("GUILE_LOAD_PATH" ":" prefix
-                                 (,modules))
+                                 (,modules
+                                  ,@(map (lambda (dep)
+                                           (string-append dep
+                                                          "/share/guile/site/"
+                                                          version))
+                                         deps)))
                                `("GUILE_LOAD_COMPILED_PATH" ":" prefix
-                                 (,compiled-modules)))
+                                 (,compiled-modules
+                                  ,@(map (lambda (dep)
+                                           (string-append dep "/lib/guile/"
+                                                          version
+                                                          "/site-ccache"))
+                                         deps))))
                              #t)))))))))
     (native-inputs
      `(("pkg-config" ,pkg-config)
@@ -1565,7 +1618,7 @@ you send to a FIFO file.")
 (define-public guile-commonmark
   (package
     (name "guile-commonmark")
-    (version "0.1")
+    (version "0.1.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/OrangeShark/" name
@@ -1573,24 +1626,12 @@ you send to a FIFO file.")
                                   "/" name "-" version ".tar.gz"))
               (sha256
                (base32
-                "12cb5fqvvgc87f5xp0ih5az305wnjia89l5jba83d0r2p8bfy0b0"))
-              (modules '((guix build utils)))
-              (snippet
-               ;; Use the real effective version of Guile in directory names
-               ;; instead of a hard-coded "/2.0".
-               '(begin
-                  (substitute* "configure"
-                    (("ac_subst_vars='")
-                     "ac_subst_vars='GUILE_EFFECTIVE_VERSION\n"))
-                  (substitute* "Makefile.in"
-                    (("moddir =.*")
-                     "moddir = $(datadir)/guile/site/@GUILE_EFFECTIVE_VERSION@\n")
-                    (("godir =.*")
-                     "godir = $(libdir)/guile/@GUILE_EFFECTIVE_VERSION@/site-ccache\n"))
-                  #t))))
+                "0kzclwkfijj8xka3g9kfj53y67c34ndfy84swdbw3j7y962ndxq6"))))
     (build-system gnu-build-system)
     (inputs
      `(("guile" ,guile-2.2)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
     (synopsis "CommonMark parser for Guile")
     (description
      "guile-commonmark is a library for parsing CommonMark, a fully specified
diff --git a/gnu/packages/hardware.scm b/gnu/packages/hardware.scm
index f77336e504..52bc3d0527 100644
--- a/gnu/packages/hardware.scm
+++ b/gnu/packages/hardware.scm
@@ -18,6 +18,7 @@
 
 (define-module (gnu packages hardware)
   #:use-module (gnu packages compression)
+  #:use-module (gnu packages gcc)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages libusb)
   #:use-module (gnu packages linux)
@@ -35,14 +36,14 @@
 (define-public ddcutil
   (package
     (name "ddcutil")
-    (version "0.9.1")
+    (version "0.9.2")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://www.ddcutil.com/tarballs/"
                            name "-" version ".tar.gz"))
        (sha256
-        (base32 "1b4bm3zhk5vnad6fxf0mn8nrlj3fngifl7nzxgxw0n56hlv7ccv0"))))
+        (base32 "0nhi261vf2n3jpi0a0n6659911kxi3lj7a4h7cmv0ip6sbb8rk88"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
@@ -74,6 +75,115 @@ calibrated, and restored when the calibration is applied.")
     (license (list license:bsd-3        ; FindDDCUtil.cmake
                    license:gpl2+))))    ; everything else
 
+;; Distinct from memtest86, which is obsolete.
+(define-public memtest86+
+  (package
+    (name "memtest86+")
+    ;; Update the description when/if UEFI support is released.
+    (version "5.01")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://www.memtest.org/download/5.01/memtest86+-"
+                           version ".tar.gz"))
+       (sha256
+        (base32 "0fch1l55753y6jkk0hj8f6vw4h1kinkn9ysp22dq5g9zjnvjf88l"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:system "i686-linux"            ; the result runs outside of any OS
+       #:tests? #f                      ; no way to test this
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure)            ; no configure script
+         (replace 'build
+           ;; The default 'make all' does wonderful things, like scp(1) a file to
+           ;; 192.168.0.12. Build the bootable images and nothing more.
+           (lambda _
+             (invoke "make"
+                     "memtest"          ; ELF executable
+                     "memtest.bin")))   ; DOS/MBR boot sector
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (lib (string-append out "/lib/memtest86+"))
+                    (doc (string-append out "/share/doc/memtest86+-" ,version)))
+               (for-each
+                (lambda (file)
+                  (install-file file lib))
+                (list "memtest"
+                      "memtest.bin"))
+               (for-each
+                (lambda (file)
+                  (install-file file doc))
+                (list "FAQ"
+                      "README"))
+               #t))))))
+    (native-inputs
+     ;; Newer GCCs fail with a deluge of "multiple definition of `__foo'" errors.
+     `(("gcc" ,gcc-4.9)))
+    (supported-systems (list "i686-linux" "x86_64-linux"))
+    (home-page "https://www.memtest.org/")
+    (synopsis "Thorough real-mode memory tester")
+    (description
+     "Memtest86+ is a thorough, stand-alone memory test for x86 systems.  It
+repeatedly writes different patterns to all memory locations, reads them back
+again, and verifies whether the result is the same as what was written.  This
+can help debug even intermittent and non-deterministic errors.
+
+It runs independently of any operating system, at computer boot-up, so that it
+can scan as much of your RAM as possible for hardware defects.
+
+Memtest86+ cannot currently be used on computers booted with UEFI.")
+    (license license:gpl2)))
+
+(define-public memtester
+  (package
+    (name "memtester")
+    (version "4.3.0")
+    (source
+     (origin
+       (method url-fetch)
+       ;; Even the latest release is available under 'old-versions/'.
+       (uri (string-append "http://pyropus.ca/software/memtester/old-versions/"
+                           "memtester-" version ".tar.gz"))
+       (sha256
+        (base32 "127xymmyzb9r6dxqrwd69v7gf8csv8kv7fjvagbglf3wfgyy5pzr"))))
+    (build-system gnu-build-system)
+    (arguments
+     `(#:make-flags
+       (list "CC=gcc")
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'configure
+           ;; This is a home-brewed configuration system where the cc/ld command
+           ;; lines are stored in one-line files.
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out")))
+               (substitute* (list "conf-cc" "conf-ld")
+                 (("^cc") "gcc"))
+               (substitute* "Makefile"
+                 (("(INSTALLPATH.*=).*" _ assignment)
+                  (string-append assignment out)))
+               #t)))
+         (replace 'check
+           ;; There is no test suite. Test some RAM for a single iteration.
+           (lambda _
+             (invoke "./memtester" "64K" "1"))))))
+    (home-page "http://pyropus.ca/software/memtester/")
+    (synopsis "User-space memory subsystem tester")
+    (description
+     "Memtester stress-tests the memory subsystem of your operating system and
+computer.  It repeatedly writes different patterns to all memory locations,
+reads them back again, and verifies whether the result is the same as what was
+written.  This can help debug even intermittent and non-deterministic errors.
+
+Memtester runs entirely in user space.  This means that you don't need to reboot
+to test your memory, but also that it's not possible to test all of the RAM
+installed in the system.
+
+It can also be told to test memory starting at a particular physical address.")
+    (license license:gpl2)))
+
 (define-public msr-tools
   (package
     (name "msr-tools")
diff --git a/gnu/packages/haskell-check.scm b/gnu/packages/haskell-check.scm
index 31407ca259..0d4501df86 100644
--- a/gnu/packages/haskell-check.scm
+++ b/gnu/packages/haskell-check.scm
@@ -54,7 +54,6 @@
     (inputs
      `(("ghc-generic-deriving" ,ghc-generic-deriving)
        ("ghc-xml" ,ghc-xml)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-stm" ,ghc-stm)
        ("ghc-tagged" ,ghc-tagged)
        ("ghc-tasty" ,ghc-tasty)))
@@ -97,7 +96,7 @@ Haskell test framework.")
 (define-public ghc-tasty-quickcheck
   (package
     (name "ghc-tasty-quickcheck")
-    (version "0.8.4")
+    (version "0.10")
     (source
      (origin
        (method url-fetch)
@@ -106,7 +105,7 @@ Haskell test framework.")
              "tasty-quickcheck-" version ".tar.gz"))
        (sha256
         (base32
-         "15rjxib5jmjq0hzj47x15kgp3awc73va4cy1pmpf7k3hvfv4qprn"))))
+         "0vr6szbbz3s5461i0zr8zpq347zfvidfzv5gf3xwxhm0yk731z8h"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-quickcheck" ,ghc-quickcheck)
@@ -125,7 +124,7 @@ Haskell test framework.")
 (define-public ghc-tasty-golden
   (package
     (name "ghc-tasty-golden")
-    (version "2.3.1.1")
+    (version "2.3.2")
     (source
      (origin
        (method url-fetch)
@@ -135,12 +134,11 @@ Haskell test framework.")
              ".tar.gz"))
        (sha256
         (base32
-         "0pcf5hsyp5mmbqn7krdm49jxpkjm6rb4j83j28f76h7q55dzm1wy"))))
+         "0k3ibjhjc9vcwzrjnl4rnwvfm8l81q347nb7dgvcib6n5wm3s404"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-temporary" ,ghc-temporary)
        ("ghc-tasty" ,ghc-tasty)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-optparse-applicative" ,ghc-optparse-applicative)
        ("ghc-tagged" ,ghc-tagged)
        ("ghc-async" ,ghc-async)
@@ -183,7 +181,7 @@ timer functions of different operating systems via a unified API.")
 (define-public ghc-tasty
   (package
     (name "ghc-tasty")
-    (version "0.11.0.4")
+    (version "1.1.0.3")
     (source
      (origin
        (method url-fetch)
@@ -193,19 +191,18 @@ timer functions of different operating systems via a unified API.")
              ".tar.gz"))
        (sha256
         (base32
-         "05pxjzgbgjdn7477xry0ssjrnmnsydqiq6nm6ck8n2da1baliqp0"))))
+         "14riid753hjqr6lca1kgxpnvq0wykf0k3qc5jpag42hh8bszav22"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-stm" ,ghc-stm)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-tagged" ,ghc-tagged)
        ("ghc-regex-tdfa" ,ghc-regex-tdfa)
-       ("ghc-regex-tdfa-rc" ,ghc-regex-tdfa-rc)
        ("ghc-optparse-applicative" ,ghc-optparse-applicative)
        ("ghc-unbounded-delays" ,ghc-unbounded-delays)
        ("ghc-async" ,ghc-async)
        ("ghc-ansi-terminal" ,ghc-ansi-terminal)
-       ("ghc-clock-bootstrap" ,ghc-clock-bootstrap)))
+       ("ghc-clock-bootstrap" ,ghc-clock-bootstrap)
+       ("ghc-wcwidth" ,ghc-wcwidth-bootstrap)))
     (home-page "http://documentup.com/feuerbach/tasty")
     (synopsis "Modern and extensible testing framework")
     (description "Tasty is a modern testing framework for Haskell.  It lets
@@ -216,7 +213,7 @@ and any other types of tests into a single test suite.")
 (define-public ghc-tasty-hunit
   (package
     (name "ghc-tasty-hunit")
-    (version "0.9.2")
+    (version "0.10.0.1")
     (source
      (origin
        (method url-fetch)
@@ -226,10 +223,11 @@ and any other types of tests into a single test suite.")
              ".tar.gz"))
        (sha256
         (base32
-         "08qnxaw34wfnzi9irs1jd4d0zczqm3k5ffkd4zwhkz0dflmgq7mf"))))
+         "0j3hgga6c3s8h5snzivb8a75h96207ia2rlbxzj07xbf4zpkp44g"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-tasty" ,ghc-tasty)))
+     `(("ghc-call-stack" ,ghc-call-stack-boot)
+       ("ghc-tasty" ,ghc-tasty)))
     (home-page "http://documentup.com/feuerbach/tasty")
     (synopsis "HUnit support for the Tasty test framework")
     (description "This package provides HUnit support for the Tasty Haskell
@@ -250,7 +248,6 @@ test framework.")
     (build-system haskell-build-system)
     (inputs
      `(("ghc-tasty" ,ghc-tasty)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)
        ("ghc-tasty-hunit" ,ghc-tasty-hunit)))
     (home-page "https://github.com/vincenthz/tasty-kat")
@@ -263,7 +260,7 @@ tasty.")
 (define-public ghc-tasty-th
   (package
     (name "ghc-tasty-th")
-    (version "0.1.4")
+    (version "0.1.7")
     (source
      (origin
        (method url-fetch)
@@ -272,10 +269,12 @@ tasty.")
              version ".tar.gz"))
        (sha256
         (base32
-         "0dff9si8i1qp0s7p4hlk0l29vq7wxfglw6mvlgmld43h7rllv88q"))))
+         "0b2ivrw2257m4cy4rjnkwqlarh83j1y3zywnmaqqqbvy667sqnj3"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-tasty" ,ghc-tasty)))
+     `(("ghc-haskell-src-exts" ,ghc-haskell-src-exts)
+       ("ghc-tasty" ,ghc-tasty)
+       ("ghc-tasty-hunit" ,ghc-tasty-hunit)))
     (home-page "https://github.com/bennofs/tasty-th")
     (synopsis "Automatically generate tasty TestTrees")
     (description
@@ -288,7 +287,7 @@ test-framework.")
 (define-public ghc-tasty-rerun
   (package
     (name "ghc-tasty-rerun")
-    (version "1.1.8")
+    (version "1.1.12")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -296,11 +295,10 @@ test-framework.")
                     "tasty-rerun-" version ".tar.gz"))
               (sha256
                (base32
-                "0yg8cicfn3qaazvp4rbanzy3dyk95k3y1kkd4bykvkl9v4076788"))))
+                "05lp4zy6lwd916snq6hs43848n62j9vdfl3s8sfivqydrax0vvd8"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-optparse-applicative" ,ghc-optparse-applicative)
+     `(("ghc-optparse-applicative" ,ghc-optparse-applicative)
        ("ghc-reducers" ,ghc-reducers)
        ("ghc-split" ,ghc-split)
        ("ghc-stm" ,ghc-stm)
@@ -317,7 +315,7 @@ been added since previous test run.")
 (define-public ghc-tasty-expected-failure
   (package
     (name "ghc-tasty-expected-failure")
-    (version "0.11.0.4")
+    (version "0.11.1.1")
     (source
      (origin
        (method url-fetch)
@@ -326,7 +324,7 @@ been added since previous test run.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "0r555f18d2gj96pjyc13chn1nxaxl81am4xgip3mvvjhw8s5mva1"))))
+         "1i2s809m644b7hgiblqay9j364r3fjj1rwbrahsn1pgr5q6mr6ji"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-tagged" ,ghc-tagged)
@@ -356,7 +354,8 @@ development.")
          "1bh1pzz5fdcqvzdcirqxna6fnjms02min5md716299g5niz46w55"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=base-compat")))
+     `(#:cabal-revision
+       ("1" "1sngfq3v71bvgjsl8cj5kh65m3fziwy8dkvwjzs0kxfrzr87faly")))
     (inputs
      `(("ghc-quickcheck" ,ghc-quickcheck)
        ("ghc-base-compat" ,ghc-base-compat)
@@ -426,7 +425,7 @@ use HUnit assertions as QuickCheck properties.")
 (define-public ghc-quickcheck
   (package
     (name "ghc-quickcheck")
-    (version "2.10.1")
+    (version "2.11.3")
     (outputs '("out" "doc"))
     (source
      (origin
@@ -437,11 +436,10 @@ use HUnit assertions as QuickCheck properties.")
              ".tar.gz"))
        (sha256
         (base32
-         "1rfmns3lj3hl93k1jws85ajkkw7z9ll8cw292n9m7zald1w5dfqx"))))
+         "0xhqk35fkzlbjcqbabg6962jkv8d688nzmz7ng4bm84x2d95d328"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:tests? #f  ; FIXME: currently missing libraries used for tests.
-       #:configure-flags '("-f base4")))
+     `(#:tests? #f))  ; FIXME: currently missing libraries used for tests.
     (inputs
      `(("ghc-random" ,ghc-random)
        ("ghc-tf-random" ,ghc-tf-random)))
@@ -455,37 +453,10 @@ hold in a large number of randomly generated cases.  Specifications are
 expressed in Haskell, using combinators defined in the QuickCheck library.")
     (license license:bsd-3)))
 
-(define-public ghc-quickcheck-2.9
-  (package
-    (inherit ghc-quickcheck)
-    (name "ghc-quickcheck")
-    (version "2.9.2")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "https://hackage.haskell.org/package/QuickCheck-2.9.2/QuickCheck-"
-                                  version ".tar.gz"))
-              (sha256
-               (base32
-                "119np67qvx8hyp9vkg4gr2wv3lj3j6ay2vl4hxspkg43ymb1cp0m"))))))
-
-(define-public ghc-quickcheck-latest
-  (package (inherit ghc-quickcheck)
-    (version "2.11.3")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "https://hackage.haskell.org/package/QuickCheck/QuickCheck-"
-             version
-             ".tar.gz"))
-       (sha256
-        (base32
-         "0xhqk35fkzlbjcqbabg6962jkv8d688nzmz7ng4bm84x2d95d328"))))))
-
 (define-public ghc-test-framework
   (package
     (name "ghc-test-framework")
-    (version "0.8.1.1")
+    (version "0.8.2.0")
     (source
      (origin
        (method url-fetch)
@@ -493,10 +464,17 @@ expressed in Haskell, using combinators defined in the QuickCheck library.")
                            "test-framework-" version ".tar.gz"))
        (sha256
         (base32
-         "0wxjgdvb1c4ykazw774zlx86550848wbsvgjgcrdzcgbb9m650vq"))))
+         "1hhacrzam6b8f10hyldmjw8pb7frdxh04rfg3farxcxwbnhwgbpm"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=time")))
+     `(#:tests? #f  ; FIXME: Tests do not build.
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "test-framework.cabal"
+               (("QuickCheck     >= 2\\.3 && < 2\\.10")
+                "QuickCheck     >= 2.3 && < 2.12")))))))
     (native-inputs
      `(("ghc-hunit" ,ghc-hunit)
        ("ghc-quickcheck" ,ghc-quickcheck)))
@@ -508,7 +486,8 @@ expressed in Haskell, using combinators defined in the QuickCheck library.")
        ("ghc-random" ,ghc-random)
        ("ghc-regex-posix" ,ghc-regex-posix)
        ("ghc-xml" ,ghc-xml)
-       ("ghc-libxml" ,ghc-libxml)))
+       ("ghc-libxml" ,ghc-libxml)
+       ("ghc-semigroups" ,ghc-semigroups-bootstrap)))
     (home-page "https://batterseapower.github.io/test-framework/")
     (synopsis "Framework for running and organising tests")
     (description
@@ -533,9 +512,9 @@ reporting and test statistics output.")
         (base32
          "1y0b6vg8nfm43v90lxxcydhi6qlxhfy4vpxbzm5ic2w55bh8xjwm"))))
     (build-system haskell-build-system)
-    ;; The official revision of the cabal file allows for HUnit lower than 1.7
     (arguments
-     `(#:configure-flags (list "--allow-newer=HUnit")))
+     `(#:cabal-revision
+       ("3" "0i9mlalv7cl1iq43ld5myrnpszq5rxmd79hk495dcb08rglhgl3z")))
     (inputs
      `(("ghc-extensible-exceptions" ,ghc-extensible-exceptions)
        ("ghc-hunit" ,ghc-hunit)
@@ -560,6 +539,9 @@ reporting and test statistics output.")
         (base32
          "0vj834337r6jzr3258cv68ly2sv5999mklpsrfngyk51kywsyqyp"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("1" "147ngmfdkskyg7mwsp5w73a4dbx3rp5s38bci3z03kn1m093lxff")))
     (inputs
      `(("ghc-extensible-exceptions" ,ghc-extensible-exceptions)
        ("ghc-quickcheck" ,ghc-quickcheck)
@@ -827,7 +809,6 @@ minimal dependencies.")
          "19wqignlq90qwpam01hnmmrxaxh5lkax9l1l6rlbi4a07nvp1dnz"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-quickcheck" ,ghc-quickcheck)
-              ("ghc-mtl" ,ghc-mtl)
               ("ghc-hunit" ,ghc-hunit)
               ("ghc-test-framework" ,ghc-test-framework)
               ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
diff --git a/gnu/packages/haskell-crypto.scm b/gnu/packages/haskell-crypto.scm
index b0be30cb6b..9bdcdb2f9e 100644
--- a/gnu/packages/haskell-crypto.scm
+++ b/gnu/packages/haskell-crypto.scm
@@ -70,8 +70,7 @@ format.")
     (inputs
      `(("ghc-hourglass" ,ghc-hourglass)
        ("ghc-asn1-types" ,ghc-asn1-types)
-       ("ghc-text" ,ghc-text)
-       ("ghc-mtl" ,ghc-mtl)))
+       ("ghc-text" ,ghc-text)))
     (native-inputs
      `(("ghc-tasty" ,ghc-tasty)
        ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)))
@@ -108,7 +107,7 @@ when ASN1 pattern matching is not convenient.")
 (define-public ghc-crypto-api
   (package
     (name "ghc-crypto-api")
-    (version "0.13.2")
+    (version "0.13.3")
     (source
      (origin
        (method url-fetch)
@@ -117,7 +116,7 @@ when ASN1 pattern matching is not convenient.")
                            "crypto-api-" version ".tar.gz"))
        (sha256
         (base32
-         "1vc27qcgbg7hf50rkqhlrs58zn1888ilh4b6wrrm07bnm48xacak"))))
+         "19bsmkqkpnvh01b77pmyarx00fic15j4hvg4pzscrj4prskrx2i9"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-cereal" ,ghc-cereal)
               ("ghc-tagged" ,ghc-tagged)
@@ -211,7 +210,9 @@ that hides the C implementation.")
          "1y8q7s2bn4gdknw1wjikdnar2b5pgz3nv3220lxrlgpsf23x82vi"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:tests? #f)) ; tests require old version of ghc-hunit (0.9)
+     `(#:cabal-revision
+       ("2" "0vyb9cfvpfxpslxvvhd48gw37i9g8ry5x63xwxd9q7xfiqhs7p3a")
+       #:tests? #f)) ; tests require old version of ghc-hunit (0.9)
     (native-inputs `(("ghc-base16-bytestring" ,ghc-base16-bytestring)
                      ("ghc-puremd5" ,ghc-puremd5)
                      ("ghc-tasty" ,ghc-tasty)
@@ -237,7 +238,9 @@ that hides the C implementation.")
          "1aqdxdhxhl9jldh951djpwxx8z7gzaqspxl7iwpl84i5ahrsyy9w"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:tests? #f)) ; tests require old version of ghc-hunit (0.9)
+     `(#:cabal-revision
+       ("2" "0xas0nbq9bfdzlj6k565ibizv1cqvzfzsdj6q9pdiiwyxqblqc3m")
+       #:tests? #f)) ; tests require old version of ghc-hunit (0.9)
     (native-inputs `(("ghc-base16-bytestring" ,ghc-base16-bytestring)
                      ("ghc-sha" ,ghc-sha)
                      ("ghc-tasty" ,ghc-tasty)
@@ -254,6 +257,42 @@ The implementation is made in C with a haskell FFI wrapper that hides
 the C implementation.")
     (license license:bsd-3)))
 
+(define-public ghc-cryptohash-sha256
+  (package
+    (name "ghc-cryptohash-sha256")
+    (version "0.11.101.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "cryptohash-sha256-" version "/"
+                           "cryptohash-sha256-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1p85vajcgw9hmq8zsz9krzx0vxh7aggwbg5w9ws8w97avcsn8xaj"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("1" "19birnmwga1yh82l4jqc3fygqkqcf5y8dlldnxfswngkzc3rvwp3")
+       #:tests? #f)) ; tests require old version of ghc-hunit (0.9)
+    (inputs
+     `(("ghc-base16-bytestring" ,ghc-base16-bytestring)))
+    (native-inputs
+     `(("ghc-sha" ,ghc-sha)
+       ("ghc-tasty" ,ghc-tasty)
+       ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)
+       ("ghc-hunit" ,ghc-hunit)))
+    (home-page "https://github.com/hvr/cryptohash-sha1")
+    (synopsis "SHA-256 implementation for Haskell")
+    (description "This Haskell package provides an incremental and
+one-pass, pure API to the @uref{https://en.wikipedia.org/wiki/SHA-2,
+SHA-256 cryptographic hash algorithm}, with performance close to the
+fastest implementations available in other languages.
+
+The implementation is made in C with a haskell FFI wrapper that hides
+the C implementation.")
+    (license license:bsd-3)))
+
 (define-public ghc-cryptonite
   (package
     (name "ghc-cryptonite")
@@ -315,7 +354,7 @@ are implemented as FFI bindings to efficient code from zlib.")
 (define-public ghc-entropy
   (package
     (name "ghc-entropy")
-    (version "0.3.8")
+    (version "0.4.1.1")
     (source
      (origin
        (method url-fetch)
@@ -324,7 +363,7 @@ are implemented as FFI bindings to efficient code from zlib.")
                            "entropy-" version ".tar.gz"))
        (sha256
         (base32
-         "1l3lfigqvdlmxkz1wl7zdkmc0i2r5p6z4xzhiw8xdsbsw7aljfkl"))))
+         "1ahz5g148l6sax3dy505na2513i99c7bxix68jja5kbx4f271zcf"))))
     (build-system haskell-build-system)
     (home-page "https://github.com/TomMD/entropy")
     (synopsis "Provides platform independent entropy source for Haskell")
@@ -335,18 +374,18 @@ to obtain cryptographically strong entropy.")
 (define-public ghc-pem
   (package
     (name "ghc-pem")
-    (version "0.2.2")
+    (version "0.2.4")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
                                   "pem/pem-" version ".tar.gz"))
               (sha256
                (base32
-                "162sk5sg22w21wqz5qv8kx6ibxp99v5p20g3nknhm1kddk3hha1p"))))
+                "1m7qjsxrd8m88cvkqmr8kscril500j2a9y0iynvksjyjkhdlq33p"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-base64-bytestring" ,ghc-base64-bytestring)))
+     `(("ghc-basement" ,ghc-basement)
+       ("ghc-memory" ,ghc-memory)))
     (native-inputs
      `(("ghc-test-framework" ,ghc-test-framework)
        ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
@@ -393,14 +432,14 @@ interface.")
 (define-public ghc-sha
   (package
     (name "ghc-sha")
-    (version "1.6.4.2")
+    (version "1.6.4.4")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
                                   "SHA/SHA-" version ".tar.gz"))
               (sha256
                (base32
-                "134ajm87fm4lpsw86m9q8apv20dw4bpk46raa389zr6bcdpifw64"))))
+                "0i4b2wjisivdy72synal711ywhx05mfqfba5n65rk8qidggm1nbb"))))
     (build-system haskell-build-system)
     (native-inputs
      `(("ghc-quickcheck" ,ghc-quickcheck)
@@ -420,18 +459,17 @@ libraries, like OpenSSL.")
 (define-public ghc-x509
   (package
     (name "ghc-x509")
-    (version "1.6.4")
+    (version "1.7.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
                                   "x509/x509-" version ".tar.gz"))
               (sha256
                (base32
-                "0hixx76wpb4qxida017ka5zr6lrsycahrqyw8z90q9mxvndpy3my"))))
+                "0mkk29g32fs70bqkikg83v45h9jig9c8aail3mrdqwxpkfa0yx21"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-memory" ,ghc-memory)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-hourglass" ,ghc-hourglass)
        ("ghc-pem" ,ghc-pem)
        ("ghc-asn1-types" ,ghc-asn1-types)
@@ -450,7 +488,7 @@ libraries, like OpenSSL.")
 (define-public ghc-x509-store
   (package
     (name "ghc-x509-store")
-    (version "1.6.2")
+    (version "1.6.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -458,15 +496,17 @@ libraries, like OpenSSL.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0yw09nwkvr324qz4sc27c0p28bz2h6gns6lkaz9mz92mgqf2dza9"))))
+                "0dbndqmnmyixxc7308nyq3zlkhz9dff4rbcw2a49c77rbicny9va"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-pem" ,ghc-pem)
+     `(("ghc-pem" ,ghc-pem)
        ("ghc-asn1-types" ,ghc-asn1-types)
        ("ghc-asn1-encoding" ,ghc-asn1-encoding)
        ("ghc-cryptonite" ,ghc-cryptonite)
        ("ghc-x509" ,ghc-x509)))
+    (native-inputs
+     `(("ghc-tasty" ,ghc-tasty)
+       ("ghc-tasty-hunit" ,ghc-tasty-hunit)))
     (home-page "https://github.com/vincenthz/hs-certificate")
     (synopsis "X.509 collection accessing and storing methods")
     (description
@@ -477,7 +517,7 @@ collections, certificates, revocation lists, and exception lists.")
 (define-public ghc-x509-validation
   (package
     (name "ghc-x509-validation")
-    (version "1.6.5")
+    (version "1.6.10")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -485,12 +525,11 @@ collections, certificates, revocation lists, and exception lists.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "190w1sr3w6w49v3yvqz4grb0v09ym4gll3n8bxwijvbvcybk3xyi"))))
+                "1ms51scawldgyfcim5a2qlgyn3rnrclyh205d6djaa1569vrs73n"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-memory" ,ghc-memory)
        ("ghc-byteable" ,ghc-byteable)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-hourglass" ,ghc-hourglass)
        ("ghc-data-default-class" ,ghc-data-default-class)
        ("ghc-pem" ,ghc-pem)
@@ -499,6 +538,9 @@ collections, certificates, revocation lists, and exception lists.")
        ("ghc-x509" ,ghc-x509)
        ("ghc-x509-store" ,ghc-x509-store)
        ("ghc-cryptonite" ,ghc-cryptonite)))
+    (native-inputs
+     `(("ghc-tasty" ,ghc-tasty)
+       ("ghc-tasty-hunit" ,ghc-tasty-hunit)))
     (home-page "https://github.com/vincenthz/hs-certificate")
     (synopsis "X.509 certificate and revocation list validation")
     (description
@@ -509,7 +551,7 @@ list validation.")
 (define-public ghc-x509-system
   (package
     (name "ghc-x509-system")
-    (version "1.6.4")
+    (version "1.6.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -517,11 +559,10 @@ list validation.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0k7zc0xp7r6kqmi39rpiicvq78xb0pr2cq6q5s3kmmsshllg13nr"))))
+                "06a4m9c7vlr9nhp9gmqbb46arf0yj1dkdm4nip03hzy67spdmp20"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-pem" ,ghc-pem)
+     `(("ghc-pem" ,ghc-pem)
        ("ghc-x509" ,ghc-x509)
        ("ghc-x509-store" ,ghc-x509-store)))
     (home-page "https://github.com/vincenthz/hs-certificate")
@@ -660,3 +701,33 @@ percent.
 @item Monte Carlo value for Pi is 3.132465868 (error 0.29 percent).
 @end itemize")
     (license license:bsd-3)))
+
+(define-public ghc-ed25519
+  (package
+    (name "ghc-ed25519")
+    (version "0.0.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/ed25519/ed25519-"
+             version ".tar.gz"))
+       (sha256
+        (base32
+         "0v8msqvgzimhs7p5ri25hrb1ni2wvisl5rmdxy89fc59py79b9fq"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("2" "1cq6h3jqkb1kvd9fjfhsllg5gq78sdiyf2gy9862xhlbv6wil19f")
+       ;; We omit these test suites because they require old versions of
+       ;; packages and packages we do not have.
+       #:configure-flags
+       '("--flags=-test-hlint -test-doctests -test-properties")))
+    (home-page "http://thoughtpolice.github.com/hs-ed25519")
+    (synopsis "Ed25519 cryptographic signatures")
+    (description "This package provides a simple, fast, self-contained
+copy of the Ed25519 public-key signature system with a clean interface.
+It also includes support for detached signatures, and thorough
+documentation on the design and implementation, including usage
+guidelines.")
+    (license license:expat)))
diff --git a/gnu/packages/haskell-web.scm b/gnu/packages/haskell-web.scm
index a043ffcc0d..2e404e2fcf 100644
--- a/gnu/packages/haskell-web.scm
+++ b/gnu/packages/haskell-web.scm
@@ -23,6 +23,7 @@
 
 (define-module (gnu packages haskell-web)
   #:use-module (gnu packages)
+  #:use-module (gnu packages curl)
   #:use-module (gnu packages haskell)
   #:use-module (gnu packages haskell-check)
   #:use-module (gnu packages haskell-crypto)
@@ -64,7 +65,7 @@ for screen-scraping.")
 (define-public ghc-cookie
   (package
     (name "ghc-cookie")
-    (version "0.4.3")
+    (version "0.4.4")
     (source
      (origin
        (method url-fetch)
@@ -74,7 +75,7 @@ for screen-scraping.")
              ".tar.gz"))
        (sha256
         (base32
-         "0qpdydhb9gw590ffabqg70x7xvjpg8l74idqnrfbhv5yrr7hryzv"))))
+         "1qy09i0jh2z9i9avy2khf8a8afq4fqgnv0fyrszgfg4kmq2fsi9j"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-old-locale" ,ghc-old-locale)
@@ -171,7 +172,6 @@ both client and server code).")
        ("ghc-old-time" ,ghc-old-time)
        ("ghc-parsec" ,ghc-parsec)
        ("ghc-puremd5" ,ghc-puremd5)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-network" ,ghc-network)
        ("ghc-network-uri" ,ghc-network-uri)
        ("ghc-split" ,ghc-split)))
@@ -230,7 +230,7 @@ for more user-friendly packages.")
 (define-public ghc-http-client-tls
   (package
     (name "ghc-http-client-tls")
-    (version "0.3.5.1")
+    (version "0.3.5.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -238,7 +238,7 @@ for more user-friendly packages.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0n4mi8z77qaggfyq17z79cl304nf1f4h6gag60v4wjwghvmj7yn1"))))
+                "0qj3pcpgbsfsc4m52dz35khhl4hf1i0nmcpa445z82d9567vy6j7"))))
     (build-system haskell-build-system)
     ;; Tests require Internet access
     (arguments `(#:tests? #f))
@@ -262,7 +262,7 @@ libraries, such as http-conduit.")
 (define-public ghc-http-date
   (package
     (name "ghc-http-date")
-    (version "0.0.6.1")
+    (version "0.0.8")
     (source
      (origin
        (method url-fetch)
@@ -271,7 +271,7 @@ libraries, such as http-conduit.")
                            "http-date-" version ".tar.gz"))
        (sha256
         (base32
-         "0dknh28kyarnzqrsc80ssalxjrq0qbv7ir49247p2grb7rh0dqgj"))))
+         "09slbzqayjnqqz9zybk7slgzvizgplikqgg4b2flzgks91466k0g"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-attoparsec" ,ghc-attoparsec)))
@@ -350,7 +350,6 @@ and HPACK.  Currently HTTP/2 16 framing and HPACK 10 is supported.")
        ("ghc-http-client" ,ghc-http-client)
        ("ghc-http-client-tls" ,ghc-http-client-tls)
        ("ghc-monad-control" ,ghc-monad-control)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-exceptions" ,ghc-exceptions)
        ("ghc-unliftio" ,ghc-unliftio)))
     (native-inputs
@@ -370,7 +369,6 @@ and HPACK.  Currently HTTP/2 16 framing and HPACK 10 is supported.")
        ("ghc-warp" ,ghc-warp)
        ("ghc-wai-conduit" ,ghc-wai-conduit)
        ("ghc-http-types" ,ghc-http-types)
-       ("ghc-http-client" ,ghc-http-client)
        ("ghc-cookie" ,ghc-cookie)
        ("ghc-conduit-extra" ,ghc-conduit-extra)
        ("ghc-streaming-commons" ,ghc-streaming-commons)
@@ -387,7 +385,7 @@ which allow you to avoid direct usage of conduits.")
 (define-public ghc-wai
   (package
     (name "ghc-wai")
-    (version "3.2.1.1")
+    (version "3.2.1.2")
     (source
      (origin
        (method url-fetch)
@@ -397,7 +395,7 @@ which allow you to avoid direct usage of conduits.")
              ".tar.gz"))
        (sha256
         (base32
-         "08afasnirja21vr0bmzcywz4w29x736dmdv7h8nnh1l8bn7sd02x"))))
+         "0jr3b2789wa4m6mxkz12ynz4lfsqmgbrcy0am8karyqr3x3528r8"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-bytestring-builder" ,ghc-bytestring-builder)
@@ -422,7 +420,7 @@ communication between web applications and web servers.")
 (define-public ghc-wai-logger
   (package
     (name "ghc-wai-logger")
-    (version "2.3.0")
+    (version "2.3.2")
     (source
      (origin
        (method url-fetch)
@@ -432,7 +430,7 @@ communication between web applications and web servers.")
              ".tar.gz"))
        (sha256
         (base32
-         "1w0b0vinsyqr37wciljkz8g5dcmfi2r210lq194a0wkycly9kkch"))))
+         "0w5ldq4gplc16zzk5ikmbbjw79imaqvw8p6lylaw3hlsbn3zzm4d"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f)) ; FIXME: Tests cannot find libraries exported
                                ; by propagated-inputs.
@@ -455,7 +453,7 @@ communication between web applications and web servers.")
 (define-public ghc-wai-extra
   (package
     (name "ghc-wai-extra")
-    (version "3.0.18")
+    (version "3.0.24.2")
     (source
      (origin
        (method url-fetch)
@@ -465,7 +463,7 @@ communication between web applications and web servers.")
              ".tar.gz"))
        (sha256
         (base32
-         "0r079mqqdv14fp97w0rigdpwk6b88grpjlqsjc5y8bbc0skf5za2"))))
+         "07gcgq59dki5drkjci9ka34xjsy3bqilbsx0lsc4905w9jlyfbci"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-ansi-terminal" ,ghc-ansi-terminal)
@@ -504,7 +502,7 @@ functionality.")
 (define-public ghc-wai-conduit
   (package
     (name "ghc-wai-conduit")
-    (version "3.0.0.3")
+    (version "3.0.0.4")
     (source
      (origin
        (method url-fetch)
@@ -513,7 +511,7 @@ functionality.")
                            "wai-conduit-" version ".tar.gz"))
        (sha256
         (base32
-         "1zvsiwjq2mvkb9sjgp3ly9m968m7a2jjzr4id6jpi3mmqykj15z4"))))
+         "07yn41rn2skd5p3wqqa09wa761vj7ibl8l19gh4bi4i8slxhk417"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-conduit" ,ghc-conduit)
@@ -526,10 +524,34 @@ functionality.")
 Haskell's Web Application Interface (WAI).")
     (license license:expat)))
 
+(define-public ghc-bsb-http-chunked
+  (package
+    (name "ghc-bsb-http-chunked")
+    (version "0.0.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/"
+             "bsb-http-chunked/bsb-http-chunked-"
+             version ".tar.gz"))
+       (sha256
+        (base32
+         "1x6m6xkrcw6jiaig1bb2wb5pqyw31x8xr9k9pxgq2g3ng44pbjr8"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-bytestring-builder" ,ghc-bytestring-builder)))
+    (home-page "http://github.com/sjakobi/bsb-http-chunked")
+    (synopsis "Chunked HTTP transfer encoding for bytestring builders")
+    (description "This Haskell library contains functions for encoding
+bytestring builders for chunked Hypertext Transfer Protocol (HTTP) 1.1
+transfers.")
+    (license license:bsd-3)))
+
 (define-public ghc-warp
   (package
     (name "ghc-warp")
-    (version "3.2.11.1")
+    (version "3.2.23")
     (source
      (origin
        (method url-fetch)
@@ -538,15 +560,12 @@ Haskell's Web Application Interface (WAI).")
                            ".tar.gz"))
        (sha256
         (base32
-         "1zp5cy0bbj508vdvms1n5z80z37m253kwsqc5a83cfc990n6fgw5"))))
+         "12v9qhi4hyp0sb90yddsax16jj7x47nmqwn53sv7b5nszcxgzam0"))))
     (build-system haskell-build-system)
-    (arguments
-     `(#:tests? #f)) ; FIXME: Test-Suite `spec` fails.
     (inputs
      `(("ghc-async" ,ghc-async)
        ("ghc-auto-update" ,ghc-auto-update)
-       ("ghc-blaze-builder" ,ghc-blaze-builder)
-       ("ghc-bytestring-builder" ,ghc-bytestring-builder)
+       ("ghc-bsb-http-chunked" ,ghc-bsb-http-chunked)
        ("ghc-case-insensitive" ,ghc-case-insensitive)
        ("ghc-hashable" ,ghc-hashable)
        ("ghc-http-types" ,ghc-http-types)
@@ -559,18 +578,18 @@ Haskell's Web Application Interface (WAI).")
        ("ghc-vault" ,ghc-vault)
        ("ghc-wai" ,ghc-wai)
        ("ghc-word8" ,ghc-word8)
-       ("ghc-lifted-base" ,ghc-lifted-base)
        ("ghc-http-date" ,ghc-http-date)
        ("ghc-simple-sendfile" ,ghc-simple-sendfile)
        ("ghc-http2" ,ghc-http2)))
     (native-inputs
-     `(("ghc-silently" ,ghc-silently)
+     `(("curl" ,curl)
+       ("ghc-silently" ,ghc-silently)
        ("ghc-hspec" ,ghc-hspec)
-       ("ghc-auto-update" ,ghc-auto-update)
        ("ghc-doctest" ,ghc-doctest)
+       ("ghc-lifted-base" ,ghc-lifted-base)
        ("ghc-quickcheck" ,ghc-quickcheck)
        ("ghc-hunit" ,ghc-hunit)
-       ("ghc-http" ,ghc-http)
+       ("ghc-http-client" ,ghc-http-client)
        ("hspec-discover" ,hspec-discover)))
     (home-page "http://github.com/yesodweb/wai")
     (synopsis "HTTP server library for Haskell's WAI")
@@ -578,10 +597,36 @@ Haskell's Web Application Interface (WAI).")
 based WAI (Web Application Interface in Haskell).")
     (license license:expat)))
 
+(define-public ghc-tls-session-manager
+  (package
+  (name "ghc-tls-session-manager")
+  (version "0.0.0.2")
+  (source
+    (origin
+      (method url-fetch)
+      (uri (string-append
+            "https://hackage.haskell.org/package/"
+            "tls-session-manager/tls-session-manager-"
+             version ".tar.gz"))
+      (sha256
+        (base32
+          "0rvmln545vghsx8zhxp44f0f6pzma8cylarmfhhysy55ipywr1n5"))))
+  (build-system haskell-build-system)
+  (inputs
+    `(("ghc-auto-update" ,ghc-auto-update)
+      ("ghc-clock" ,ghc-clock)
+      ("ghc-psqueues" ,ghc-psqueues)
+      ("ghc-tls" ,ghc-tls)))
+  (home-page "http://hackage.haskell.org/package/tls-session-manager")
+  (synopsis "In-memory TLS session manager")
+  (description "This Haskell library provides a TLS session manager with
+limitation, automatic pruning, energy saving and replay resistance.")
+  (license license:bsd-3)))
+
 (define-public ghc-warp-tls
   (package
     (name "ghc-warp-tls")
-    (version "3.2.3")
+    (version "3.2.4.3")
     (source
      (origin
        (method url-fetch)
@@ -590,7 +635,7 @@ based WAI (Web Application Interface in Haskell).")
                            "warp-tls-" version ".tar.gz"))
        (sha256
         (base32
-         "14m2bzk5ivz9gdpxlcj6qnh46f2lycm1ybdjnfkj2876zrqwii7m"))))
+         "17gj295fr98l7mkz2gdz6kahdnmja0sql3kvy2zab6q168g53kc4"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-cryptonite" ,ghc-cryptonite)
@@ -598,6 +643,7 @@ based WAI (Web Application Interface in Haskell).")
        ("ghc-network" ,ghc-network)
        ("ghc-streaming-commons" ,ghc-streaming-commons)
        ("ghc-tls" ,ghc-tls)
+       ("ghc-tls-session-manager" ,ghc-tls-session-manager)
        ("ghc-wai" ,ghc-wai)
        ("ghc-warp" ,ghc-warp)))
     (home-page "http://github.com/yesodweb/wai")
@@ -609,7 +655,7 @@ a WAI handler, via the native Haskell TLS implementation.")
 (define-public ghc-xss-sanitize
   (package
     (name "ghc-xss-sanitize")
-    (version "0.3.5.7")
+    (version "0.3.6")
     (source
      (origin
        (method url-fetch)
@@ -618,7 +664,7 @@ a WAI handler, via the native Haskell TLS implementation.")
              version ".tar.gz"))
        (sha256
         (base32
-         "005cmhaw9xbzkcn42jmhvcvk63bzmg4lml368xwmqdvh7r0mcn4m"))))
+         "1d72s3a6520iwwc1wbn9v2znqgbw6a5wwzb23iq8ny9ccnjyx1dk"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-tagsoup" ,ghc-tagsoup)
@@ -666,7 +712,7 @@ Haskell.")
 (define-public ghc-mime-types
   (package
     (name "ghc-mime-types")
-    (version "0.1.0.7")
+    (version "0.1.0.8")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -674,7 +720,7 @@ Haskell.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "1fg9cqpp5lswk8ajlq4f41n12c2v2naz179l8dsz6zisjqj4l5l3"))))
+                "14ccl2842ya17zyj0bpc7vzklbyqvvydpbypn69h2fmhgji192x8"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-text" ,ghc-text)))
@@ -710,7 +756,7 @@ documents.")
 (define-public ghc-xhtml
   (package
     (name "ghc-xhtml")
-    (version "3000.2.1")
+    (version "3000.2.2.1")
     (source
      (origin
        (method url-fetch)
@@ -720,7 +766,7 @@ documents.")
              ".tar.gz"))
        (sha256
         (base32
-         "1n6wgzxbj8xf0wf1il827qidphnffb5vzhwzqlxhh70c2y10f0ik"))))
+         "0939kwpinq6l4n3nyvd1gzyl7f83gymw0wzqndlgy1yc7q0nkj2w"))))
     (build-system haskell-build-system)
     (home-page "https://github.com/haskell/xhtml")
     (synopsis "XHTML combinator library")
@@ -732,7 +778,7 @@ Strict, Transitional and Frameset variants.")
 (define-public ghc-blaze-html
   (package
     (name "ghc-blaze-html")
-    (version "0.9.0.1")
+    (version "0.9.1.1")
     (source
      (origin
        (method url-fetch)
@@ -741,11 +787,8 @@ Strict, Transitional and Frameset variants.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "0r0acv47nh75bmf7kjyfvhcwz8f02rn9x0a1l80pzgyczfrsmkmf"))))
+         "06xv8fqhclfjj61z74cgggn4lmx1s7diakxg84mnkgfvk11983pa"))))
     (build-system haskell-build-system)
-    (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck"
-                               "--allow-newer=HUnit")))
     (inputs
      `(("ghc-blaze-builder" ,ghc-blaze-builder)
        ("ghc-text" ,ghc-text)
@@ -764,7 +807,7 @@ Strict, Transitional and Frameset variants.")
 (define-public ghc-aeson
   (package
     (name "ghc-aeson")
-    (version "1.2.4.0")
+    (version "1.3.1.1")
     (source
      (origin
        (method url-fetch)
@@ -774,7 +817,7 @@ Strict, Transitional and Frameset variants.")
              ".tar.gz"))
        (sha256
         (base32
-         "16zwpd07cmhs58wwsqbhxy3b58gqw8w5nr7nf6lwi4nvznjdn09l"))))
+         "1i1ig840fvsb1lnklcv32zsc0zscirc301lw1mpfxhc6h4pk0gw4"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f)) ; FIXME: testing libraries are missing.
     (inputs
@@ -808,22 +851,10 @@ for Haskell, optimized for ease of use and high performance.  (A note on
 naming: in Greek mythology, Aeson was the father of Jason.)")
     (license license:bsd-3)))
 
-(define-public ghc-aeson-for-pandoc-1
-  (package (inherit ghc-aeson)
-    (version "1.1.2.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://hackage.haskell.org/package/aeson/aeson-"
-                           version ".tar.gz"))
-       (sha256
-        (base32
-         "1zy5z8pzvh53qkjm0nm3f4rwqfqg3867ck8ncd6mrxpcyvxqqj1p"))))))
-
 (define-public ghc-aeson-pretty
   (package
     (name "ghc-aeson-pretty")
-    (version "0.8.5")
+    (version "0.8.7")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -831,7 +862,7 @@ naming: in Greek mythology, Aeson was the father of Jason.)")
                     version ".tar.gz"))
               (sha256
                (base32
-                "1yd98972srlbkn0f2jhrb3f443j9wnq2fnw5gbxjxzmkcinfh5yx"))))
+                "1m977gs0s9gf3lwzlbs5y7bl6ansc5pywmn2qjk09l5bwg2yrhf1"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-aeson" ,ghc-aeson)
@@ -889,7 +920,7 @@ of a JSON value into a @code{Data.Aeson.Value}.")
 (define-public ghc-multipart
   (package
     (name "ghc-multipart")
-    (version "0.1.2")
+    (version "0.1.3")
     (source
      (origin
        (method url-fetch)
@@ -899,9 +930,11 @@ of a JSON value into a @code{Data.Aeson.Value}.")
              ".tar.gz"))
        (sha256
         (base32
-         "0g04jhyw1ib1s7c9bcldyyn4n90qd9x7dmvic4vgq57bgcqgnhz5"))))
+         "1x4n4yyva22dhfr1pg5ki112qvvzb4hyd7bwpm189iq4gcp52q4z"))))
     (build-system haskell-build-system)
-    (inputs `(("ghc-parsec" ,ghc-parsec)))
+    (inputs
+     `(("ghc-parsec" ,ghc-parsec)
+       ("ghc-stringsearch" ,ghc-stringsearch)))
     (home-page
      "http://www.github.com/silkapp/multipart")
     (synopsis
@@ -1023,7 +1056,7 @@ avoid any issues with characters.")
 (define-public ghc-yesod-core
   (package
     (name "ghc-yesod-core")
-    (version "1.4.37")
+    (version "1.6.6")
     (source
      (origin
        (method url-fetch)
@@ -1032,18 +1065,18 @@ avoid any issues with characters.")
                            "yesod-core-" version ".tar.gz"))
        (sha256
         (base32
-         "0ww8hl0cx2g58zrdx3j6d5m2xwhssbajdqws1xk6rzl7rpfm1b9j"))))
+         "0xahf6m5c7mkl74p0gimy4wb5w4s3lh92wwxmk517fbq666c92kb"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-wai" ,ghc-wai)
               ("ghc-extra" ,ghc-extra)
               ("ghc-text" ,ghc-text)
               ("ghc-shakespeare" ,ghc-shakespeare)
               ("ghc-blaze-builder" ,ghc-blaze-builder)
-              ("ghc-mtl" ,ghc-mtl)
               ("ghc-clientsession" ,ghc-clientsession)
               ("ghc-random" ,ghc-random)
               ("ghc-cereal" ,ghc-cereal)
               ("ghc-old-locale" ,ghc-old-locale)
+              ("ghc-unliftio" ,ghc-unliftio)
               ("ghc-unordered-containers" ,ghc-unordered-containers)
               ("ghc-monad-control" ,ghc-monad-control)
               ("ghc-transformers-base" ,ghc-transformers-base)
@@ -1058,6 +1091,7 @@ avoid any issues with characters.")
               ("ghc-monad-logger" ,ghc-monad-logger)
               ("ghc-conduit" ,ghc-conduit)
               ("ghc-resourcet" ,ghc-resourcet)
+              ("ghc-rio" ,ghc-rio)
               ("ghc-lifted-base" ,ghc-lifted-base)
               ("ghc-blaze-html" ,ghc-blaze-html)
               ("ghc-blaze-markup" ,ghc-blaze-markup)
@@ -1093,7 +1127,7 @@ functions, widgets, etc.")
 (define-public ghc-yesod-persistent
   (package
     (name "ghc-yesod-persistent")
-    (version "1.4.3")
+    (version "1.6.0")
     (source
      (origin
        (method url-fetch)
@@ -1102,7 +1136,7 @@ functions, widgets, etc.")
                            "yesod-persistent-" version ".tar.gz"))
        (sha256
         (base32
-         "0kiksw46c8ww9yiwl28pkrppx8d6fhsasr0hvmsliqbrp16likj8"))))
+         "1gd59xf7b6v3cald58mzwnfbdzjr49cz60rm4wc5w9pvfx12pgj2"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f)) ; FIXME: hspec-discover not available in PATH.
     (inputs `(("ghc-yesod-core" ,ghc-yesod-core)
@@ -1126,7 +1160,7 @@ from Yesod.")
 (define-public ghc-yesod-form
     (package
     (name "ghc-yesod-form")
-    (version "1.4.16")
+    (version "1.6.2")
     (source
       (origin
         (method url-fetch)
@@ -1136,7 +1170,7 @@ from Yesod.")
                ".tar.gz"))
         (sha256
           (base32
-            "0lij3m5vn8nvh6y88r1dhk03xmmjwmjzazm307nc2wvc5fmx9p2j"))))
+            "1p1x1hffvarplc82ykdk7rm6p5isqgqf78bvxzpfhncxs4kwx057"))))
     (build-system haskell-build-system)
     (inputs
       `(("ghc-yesod-core" ,ghc-yesod-core)
@@ -1169,7 +1203,7 @@ providing richtext field using Nic editor. ")
 (define-public ghc-yesod
   (package
     (name "ghc-yesod")
-    (version "1.4.5")
+    (version "1.6.0")
     (source
      (origin
        (method url-fetch)
@@ -1178,7 +1212,7 @@ providing richtext field using Nic editor. ")
              version ".tar.gz"))
        (sha256
         (base32
-         "1sg66nq8yaas2m5nqsdrxricvcizd1ik02zqk60sxh3wna08fz16"))))
+         "0wx77nbpzdh40p1bm527kimfj48vs9d2avpvvz2w42zi3pz2y94a"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-yesod-core" ,ghc-yesod-core)
diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index eb629cf138..57435dca07 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -43,6 +43,7 @@
   #:use-module (gnu packages ghostscript)
   #:use-module (gnu packages gl)
   #:use-module (gnu packages graphviz)
+  #:use-module (gnu packages gtk)
   #:use-module (gnu packages haskell-check)
   #:use-module (gnu packages haskell-crypto)
   #:use-module (gnu packages haskell-web)
@@ -559,7 +560,7 @@ interactive environment for the functional language Haskell.")
                                 (file-pattern ".*\\.conf\\.d$")
                                 (file-type 'directory))))))
 
-(define-public ghc ghc-8.0)
+(define-public ghc ghc-8)
 
 (define-public ghc-hostname
   (package
@@ -596,7 +597,6 @@ determine the hostname.")
     (inputs
      `(("ghc-old-time" ,ghc-old-time)
        ("ghc-old-locale" ,ghc-old-locale)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-text" ,ghc-text)))
     (home-page "https://hackage.haskell.org/package/convertible")
     (synopsis "Typeclasses and instances for converting between types")
@@ -649,8 +649,7 @@ between double precision floating point and text.")
          "01zvk86kg726lf2vnlr7dxiz7g3xwi5a4ak9gcfbwyhynkzjmsfi"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("libxml2" ,libxml2)))
+     `(("libxml2" ,libxml2)))
     (arguments
      `(#:configure-flags
        `(,(string-append "--extra-include-dirs="
@@ -825,10 +824,119 @@ code pages on Windows.  On all other operating systems, the library does
 nothing.")
   (license license:bsd-3)))
 
+(define-public ghc-newtype-generics
+  (package
+    (name "ghc-newtype-generics")
+    (version "0.5.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "newtype-generics/newtype-generics-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "0igyisw2djg19v9vkna1rwf47k97mvkvk4bbkmswznvbm00z15gj"))))
+    (build-system haskell-build-system)
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)
+       ("hspec-discover" ,hspec-discover)))
+    (home-page "http://github.com/sjakobi/newtype-generics")
+    (synopsis "Typeclass and set of functions for working with newtypes")
+    (description "The @code{Newtype} typeclass represents the packing and
+unpacking of a newtype, and allows you to operate under that newtype with
+functions such as @code{ala}.  Generics support was added in version 0.4,
+making this package a full replacement for the original newtype package,
+and an alternative to newtype-th.")
+    (license license:bsd-3)))
+
+(define-public ghc-memotrie
+  (package
+    (name "ghc-memotrie")
+    (version "0.6.9")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/MemoTrie/MemoTrie-"
+             version
+             ".tar.gz"))
+       (sha256
+        (base32
+         "157p0pi6rrq74a35mq6zkkycv4ah7xhkbrcmnkb9xf7pznw4aq0x"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-newtype-generics" ,ghc-newtype-generics)))
+    (home-page "https://github.com/conal/MemoTrie")
+    (synopsis "Trie-based memo functions")
+    (description "This package provides a functional library for creating
+efficient memo functions using tries.")
+    (license license:bsd-3)))
+
+(define-public ghc-tree-diff
+  (package
+    (name "ghc-tree-diff")
+    (version "0.0.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/tree-diff/tree-diff-"
+             version
+             ".tar.gz"))
+       (sha256
+        (base32
+         "049v44c520jy3icxlnrvbdblh3mjmvd7m6qmkzxbzkf02x63xqmz"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("4" "1rqxxyj6hqllahs11693g855cxz8mgnb490s7j1ksd300i5xgjsp")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "tree-diff.cabal"
+               (("trifecta             >=1\\.7\\.1\\.1  && <1\\.8")
+                "trifecta             >=1.7.1.1  && <=2")))))))
+    (inputs
+     `(("ghc-aeson" ,ghc-aeson)
+       ("ghc-ansi-wl-pprint" ,ghc-ansi-wl-pprint)
+       ("ghc-ansi-terminal" ,ghc-ansi-terminal)
+       ("ghc-base-compat" ,ghc-base-compat)
+       ("ghc-generics-sop" ,ghc-generics-sop)
+       ("ghc-hashable" ,ghc-hashable)
+       ("ghc-memotrie" ,ghc-memotrie)
+       ("ghc-parsec" ,ghc-parsec)
+       ("ghc-parsers" ,ghc-parsers)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-scientific" ,ghc-scientific)
+       ("ghc-tagged" ,ghc-tagged)
+       ("ghc-text" ,ghc-text)
+       ("ghc-unordered-containers" ,ghc-unordered-containers)
+       ("ghc-uuid-types" ,ghc-uuid-types)
+       ("ghc-vector" ,ghc-vector)))
+    (native-inputs
+     `(("ghc-base-compat" ,ghc-base-compat)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-ansi-terminal" ,ghc-ansi-terminal)
+       ("ghc-ansi-wl-pprint" ,ghc-ansi-wl-pprint)
+       ("ghc-parsec" ,ghc-parsec)
+       ("ghc-trifecta" ,ghc-trifecta)
+       ("ghc-tasty" ,ghc-tasty)
+       ("ghc-tasty-golden" ,ghc-tasty-golden)
+       ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)))
+    (home-page "https://github.com/phadej/tree-diff")
+    (synopsis "Compute difference between (expression) trees")
+    (description "This Haskell library provides a function for computing
+the difference bewteen (expression) trees.  It also provides a way to
+compute the difference between arbitrary abstract datatypes (ADTs) using
+@code{Generics}-derivable helpers.")
+    (license license:bsd-3)))
+
 (define-public ghc-haddock-library
   (package
     (name "ghc-haddock-library")
-    (version "1.4.3")
+    (version "1.5.0.1")
     (source
      (origin
        (method url-fetch)
@@ -838,14 +946,37 @@ nothing.")
              ".tar.gz"))
        (sha256
         (base32
-         "0ns4bpf6whmcfl0cm2gx2c73if416x4q3ac4l4qm8w84h0zpcr7p"))))
+         "1cmbg8l5xrwpliclwy3l057raypjqy0hsg1h1743ahaj8gq10b7z"))
+       (patches (search-patches
+                 "ghc-haddock-library-unbundle.patch"))
+       (modules '((guix build utils)))
+       (snippet '(begin
+                   (delete-file-recursively "vendor")
+                   #t))))
     (build-system haskell-build-system)
-    (inputs
-     `(("ghc-base-compat" ,ghc-base-compat)))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'relax-test-suite-dependencies
+           (lambda _
+             (substitute* "haddock-library.cabal"
+               (("base-compat\\s*\\^>= 0\\.9\\.3") "base-compat")
+               (("hspec\\s*\\^>= 2\\.4\\.4") "hspec"))))
+         ;; The release tarball does not contain the "fixtures/examples"
+         ;; directory, which is required for testing.  In the upstream
+         ;; repository, the directory exists and is populated.  Here, we
+         ;; create an empty directory to placate the tests.
+         (add-before 'check 'add-examples-directory
+           (lambda _
+             (mkdir "fixtures/examples")
+             #t)))))
     (native-inputs
-     `(("hspec-discover" ,hspec-discover)
+     `(("ghc-base-compat" ,ghc-base-compat)
        ("ghc-hspec" ,ghc-hspec)
-       ("ghc-quickcheck" ,ghc-quickcheck)))
+       ("ghc-optparse-applicative" ,ghc-optparse-applicative)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-tree-diff" ,ghc-tree-diff)
+       ("hspec-discover" ,hspec-discover)))
     (home-page "https://www.haskell.org/haddock/")
     (synopsis "Library exposing some functionality of Haddock")
     (description
@@ -859,8 +990,7 @@ the ‘haddock’ package.")
 (define-public ghc-haddock-api
   (package
     (name "ghc-haddock-api")
-    ;; This is the last version to be supported by Cabal < 2.0
-    (version "2.17.4")
+    (version "2.19.0.1")
     (source
      (origin
        (method url-fetch)
@@ -870,8 +1000,18 @@ the ‘haddock’ package.")
              ".tar.gz"))
        (sha256
         (base32
-         "00fn6pzgg8xjbaw12d76jdqh2dbc5xy7miyz0x6kidvvar7i35ss"))))
+         "0c6i7sljp7myz25d90gyw68a90i5jcrkajkxcciikp2hjirfaas3"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "haddock-api.cabal"
+               (("Cabal           \\^>= 2\\.0\\.0")
+                "Cabal           ^>= 2.2.0")
+               (("hspec           \\^>= 2\\.4\\.4")
+                "hspec            >= 2.4.4 && < 2.6")))))))
     (inputs
      `(("ghc-paths" ,ghc-paths)
        ("ghc-haddock-library" ,ghc-haddock-library)))
@@ -910,7 +1050,7 @@ documentation-generation tool for Haskell libraries.")
 (define-public ghc-haddock
   (package
     (name "ghc-haddock")
-    (version "2.17.4")
+    (version "2.19.0.1")
     (source
      (origin
        (method url-fetch)
@@ -920,16 +1060,37 @@ documentation-generation tool for Haskell libraries.")
              ".tar.gz"))
        (sha256
         (base32
-         "1z3h3v7w84dzsm47iavdppc2w899mr4c1agq9fzghgz902i0a655"))))
+         "1g1j9j0hf2yhyyh0gwz6bzbvfvliqz9x8a8hnkmwghm7w3xa6sb7"))))
     (build-system haskell-build-system)
-    ;; FIXME: Tests fail with this error:
-    ;; driver-test/Main.hs:4:1: error:
-    ;; Failed to load interface for ‘ResponseFileSpec’
-    (arguments `(#:tests? #f))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         ;; There are four test suites that require the ghc-haddock-test
+         ;; package, which no longer builds with GHC 8.4.3.  This phase
+         ;; removes these four test suites from the Cabal file, so that we
+         ;; do not need ghc-haddock-test as an input.
+         (add-before 'configure 'remove-haddock-test-test-suites
+           (lambda _
+             (use-modules (ice-9 rdelim))
+             (with-atomic-file-replacement "haddock.cabal"
+               (lambda (in out)
+                 (let loop ((line (read-line in 'concat)) (deleting? #f))
+                   (cond
+                    ((eof-object? line) #t)
+                    ((string-every char-set:whitespace line)
+                     (unless deleting? (display line out))
+                     (loop (read-line in 'concat) #f))
+                    ((member line '("test-suite html-test\n"
+                                    "test-suite hypsrc-test\n"
+                                    "test-suite latex-test\n"
+                                    "test-suite hoogle-test\n"))
+                     (loop (read-line in 'concat) #t))
+                    (else
+                     (unless deleting? (display line out))
+                     (loop (read-line in 'concat) deleting?)))))))))))
     (inputs `(("ghc-haddock-api" ,ghc-haddock-api)))
     (native-inputs
-     `(("ghc-hspec" ,ghc-hspec)
-       ("ghc-haddock-test" ,ghc-haddock-test)))
+     `(("ghc-hspec" ,ghc-hspec)))
     (home-page "https://www.haskell.org/haddock/")
     (synopsis
      "Documentation-generation tool for Haskell libraries")
@@ -940,7 +1101,7 @@ documentation-generation tool for Haskell libraries.")
 (define-public ghc-simple-reflect
   (package
     (name "ghc-simple-reflect")
-    (version "0.3.2")
+    (version "0.3.3")
     (source
      (origin
        (method url-fetch)
@@ -950,7 +1111,7 @@ documentation-generation tool for Haskell libraries.")
              ".tar.gz"))
        (sha256
         (base32
-         "1dpcf6w3cf1sfl9bnlsx04x7aghw029glj5d05qzrsnms2rlw8iq"))))
+         "0ayvrx5cm8n6db21jiyjmk5h93pw7cz1707hih09hlhk9jh5x0h7"))))
     (build-system haskell-build-system)
     (home-page
      "https://twanvl.nl/blog/haskell/simple-reflection-of-expressions")
@@ -967,7 +1128,7 @@ them.")
 (define-public ghc-haskell-src
   (package
     (name "ghc-haskell-src")
-    (version "1.0.2.0")
+    (version "1.0.3.0")
     (source
      (origin
        (method url-fetch)
@@ -977,7 +1138,7 @@ them.")
              ".tar.gz"))
        (sha256
         (base32
-         "19lilhpwnjb7cks9fq1ipnc8f7dwxy0ri3dgjkdxs3i355byw99a"))))
+         "1g4dj1f0j68bhn4ixfac63wjzy6gsp6kwgxryb1k5nl3i0g99d5l"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-happy" ,ghc-happy)
@@ -996,7 +1157,7 @@ package are to parse or generate Haskell 98 code.")
 (define-public ghc-alex
   (package
     (name "ghc-alex")
-    (version "3.2.3")
+    (version "3.2.4")
     (source
      (origin
        (method url-fetch)
@@ -1006,9 +1167,20 @@ package are to parse or generate Haskell 98 code.")
              ".tar.gz"))
        (sha256
         (base32
-         "0bi1cs9b8ir33h1fl6x2xw4ymygapqbr713ridpf7rmk2wa7jqqs"))))
+         "0cpjixgsr0b2x4s6hz4aa6gnmjw9i7xd9nlfi8m37zqlidq4v3nm"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'set-check-variables
+           (lambda _
+             (setenv "PATH" (string-append (getcwd) "/dist/build/alex:"
+                                           (getenv "PATH")))
+             (setenv "alex_datadir" (string-append (getcwd) "/data"))
+             #t)))))
     (inputs `(("ghc-quickcheck" ,ghc-quickcheck)))
+    (native-inputs
+     `(("which" ,which)))
     (home-page "https://www.haskell.org/alex/")
     (synopsis
      "Tool for generating lexical analysers in Haskell")
@@ -1035,14 +1207,25 @@ tool lex or flex for C/C++.")
          "1hbpplss1m4rdpm4ibip6fpimlhssqa14fl338kl2jbc463i64cj"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck")))
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "cgi.cabal"
+               (("exceptions < 0\\.9")
+                "exceptions < 0.11")
+               (("time >= 1\\.5 && < 1\\.7")
+                "time >= 1.5 && < 1.9")
+               (("doctest >= 0\\.8 && < 0\\.12")
+                "doctest >= 0.8 && < 0.17")
+               (("QuickCheck >= 2\\.8\\.1 && < 2\\.10")
+                "QuickCheck >= 2.8.1 && < 2.12")))))))
     (inputs
      `(("ghc-parsec" ,ghc-parsec)
        ("ghc-exceptions" ,ghc-exceptions)
        ("ghc-multipart" ,ghc-multipart)
        ("ghc-network-uri" ,ghc-network-uri)
-       ("ghc-network" ,ghc-network)
-       ("ghc-mtl" ,ghc-mtl)))
+       ("ghc-network" ,ghc-network)))
     (native-inputs
      `(("ghc-doctest" ,ghc-doctest)
        ("ghc-quickcheck" ,ghc-quickcheck)))
@@ -1056,7 +1239,7 @@ tool lex or flex for C/C++.")
 (define-public ghc-cmdargs
   (package
     (name "ghc-cmdargs")
-    (version "0.10.18")
+    (version "0.10.20")
     (source
      (origin
        (method url-fetch)
@@ -1065,7 +1248,7 @@ tool lex or flex for C/C++.")
              version ".tar.gz"))
        (sha256
         (base32
-         "1lnmcsf6p9yrwwz1zvrw5lbc32xpff7b70yz4ylawaflnlz6wrlh"))))
+         "0cbkmgrcnwgigg6z88y3c09gm7g6dwm7gzbgr53h8k1xik29s9hf"))))
     (build-system haskell-build-system)
     (home-page
      "http://community.haskell.org/~ndm/cmdargs/")
@@ -1099,7 +1282,7 @@ postfix notation.  For more information on stack based languages, see
 (define-public ghc-happy
   (package
     (name "ghc-happy")
-    (version "1.19.8")
+    (version "1.19.9")
     (source
      (origin
        (method url-fetch)
@@ -1109,10 +1292,8 @@ postfix notation.  For more information on stack based languages, see
              ".tar.gz"))
        (sha256
         (base32
-         "186ky3bly0i3cc56qk3r7j7pxh2108aackq4n2lli7jmbnb3kxsd"))))
+         "138xpxdb7x62lpmgmb6b3v3vgdqqvqn4273jaap3mjmc2gla709y"))))
     (build-system haskell-build-system)
-    (inputs
-     `(("ghc-mtl" ,ghc-mtl)))
     (home-page "https://hackage.haskell.org/package/happy")
     (synopsis "Parser generator for Haskell")
     (description "Happy is a parser generator for Haskell.  Given a grammar
@@ -1143,7 +1324,7 @@ Happy works in a similar way to the yacc tool for C.")
 (define-public ghc-pretty-show
   (package
     (name "ghc-pretty-show")
-    (version "1.6.12")
+    (version "1.7")
     (source
      (origin
        (method url-fetch)
@@ -1151,7 +1332,7 @@ Happy works in a similar way to the yacc tool for C.")
                            "pretty-show-" version ".tar.gz"))
        (sha256
         (base32
-         "1fblcxw4z4ry14brin1mvwccs6hqqlhi7xhwv1f23szjq25cjacn"))))
+         "0br7pkxqqqhby2j2v1g847lgqsrasx56g1jw3dhmjh4flzs6warq"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-haskell-lexer" ,ghc-haskell-lexer)
@@ -1168,23 +1349,10 @@ complex generic values into an interactive Html page, for easier
 examination.")
     (license license:expat)))
 
-(define-public ghc-pretty-show-for-haskell-src-exts
-  (package (inherit ghc-pretty-show)
-    (name "ghc-pretty-show")
-    (version "1.6.10")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://hackage.haskell.org/package/pretty-show/"
-                           "pretty-show-" version ".tar.gz"))
-       (sha256
-        (base32
-         "133s4l1gk46saf6ycm785rswycy8g3j0qqrv93b5wp8cp50kd0ww"))))))
-
 (define-public ghc-haskell-src-exts
   (package
     (name "ghc-haskell-src-exts")
-    (version "1.20.1")
+    (version "1.20.2")
     (source
      (origin
        (method url-fetch)
@@ -1194,13 +1362,12 @@ examination.")
              ".tar.gz"))
        (sha256
         (base32
-         "1jsjl9hja2dpcfq4mzlfpwyr6axwnwgacfb7aa070kz4lbygzaa8"))))
+         "1sm3z4v1p5yffg01ldgavz71s3bvfhjfa13k428rk14bpkl8crlz"))))
     (build-system haskell-build-system)
     (inputs
      `(("cpphs" ,cpphs)
        ("ghc-happy" ,ghc-happy)
-       ("ghc-mtl" ,ghc-mtl)
-       ("ghc-pretty-show" ,ghc-pretty-show-for-haskell-src-exts)))
+       ("ghc-pretty-show" ,ghc-pretty-show)))
     (native-inputs
      `(("ghc-smallcheck" ,ghc-smallcheck)
        ("ghc-tasty" ,ghc-tasty)
@@ -1218,7 +1385,7 @@ patterns as per the HaRP extension as well as HSX-style embedded XML syntax.")
 (define-public ghc-haskell-src-exts-util
   (package
     (name "ghc-haskell-src-exts-util")
-    (version "0.2.2")
+    (version "0.2.3")
     (source
      (origin
        (method url-fetch)
@@ -1227,7 +1394,7 @@ patterns as per the HaRP extension as well as HSX-style embedded XML syntax.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "14rhwcrdz3kfb69c64qn8kybl7wnpajrjlfz5p95ca4bva4mwclg"))))
+         "1803718paq89f8pdck4mb88hv2k1ah9lxzq0lgjgwi9n88ryycz8"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-data-default" ,ghc-data-default)
@@ -1266,7 +1433,7 @@ specify refactorings without depending on GHC.")
 (define-public hlint
   (package
     (name "hlint")
-    (version "2.1.1")
+    (version "2.1.10")
     (source
      (origin
        (method url-fetch)
@@ -1275,7 +1442,7 @@ specify refactorings without depending on GHC.")
              "/" name "-" version ".tar.gz"))
        (sha256
         (base32
-         "0mmfavd158l5ig5wb1b1zbhbraj8hhqvbk4mg85n6c8ndpr4grd4"))))
+         "19as2m9g75cr6n1agzvsij0cvqhb0wbjlk31w4y5d5mns87dki0w"))))
     (build-system haskell-build-system)
     (inputs
      `(("cpphs" ,cpphs)
@@ -1317,7 +1484,6 @@ unwanted suggestions, and to add your own custom suggestions.")
      `(("ghc-transformers-base" ,ghc-transformers-base)
        ("ghc-monad-control" ,ghc-monad-control)
        ("ghc-transformers-compat" ,ghc-transformers-compat)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-mmorph" ,ghc-mmorph)
        ("ghc-exceptions" ,ghc-exceptions)
        ("ghc-unliftio-core" ,ghc-unliftio-core)))
@@ -1356,7 +1522,7 @@ OpenAL.")
 (define-public ghc-sdl
   (package
     (name "ghc-sdl")
-    (version "0.6.5.1")
+    (version "0.6.7.0")
     (source
      (origin
        (method url-fetch)
@@ -1366,7 +1532,7 @@ OpenAL.")
              ".tar.gz"))
        (sha256
         (base32
-         "1sa3zx3vrs1gbinxx33zwq0x2bsf3i964bff7419p7vzidn36k46"))))
+         "00y67v80a8l09i3k76z09lg25kw72ivl09nag8ckdlk4a0cfnzfq"))))
     (build-system haskell-build-system)
     (inputs
      `(("sdl" ,sdl)))
@@ -1382,7 +1548,7 @@ award winning Linux port of \"Civilization: Call To Power.\"")
 (define-public ghc-sdl-mixer
   (package
     (name "ghc-sdl-mixer")
-    (version "0.6.2.0")
+    (version "0.6.3.0")
     (source
      (origin
        (method url-fetch)
@@ -1392,7 +1558,7 @@ award winning Linux port of \"Civilization: Call To Power.\"")
              ".tar.gz"))
        (sha256
         (base32
-         "1fhray79d80dk2aj9mx3ks05mm48sd832g8zgxli226jx471fs8r"))))
+         "0k26hqgdh789ka3mv4dsk6rin6x6vwcs6hjmnsqq7j3mnrh1342r"))))
     (build-system haskell-build-system)
     (arguments
      `(#:configure-flags
@@ -1413,7 +1579,7 @@ MIDI, Ogg Vorbis, and SMPEG MP3 libraries.")
 (define-public ghc-sdl-image
   (package
     (name "ghc-sdl-image")
-    (version "0.6.1.2")
+    (version "0.6.2.0")
     (source
      (origin
        (method url-fetch)
@@ -1423,7 +1589,7 @@ MIDI, Ogg Vorbis, and SMPEG MP3 libraries.")
              ".tar.gz"))
        (sha256
         (base32
-         "1ybdwlqi5nqzpsbh2md5mxhwmjn910iqysf6nykwjxlmvhcjk281"))))
+         "1gxwrvswgwjw6g7ym52gik22l9l3ljy592phv97jdmcf3gi6qcg1"))))
     (build-system haskell-build-system)
     (arguments
      `(#:configure-flags
@@ -1443,7 +1609,7 @@ PNG, PNM, TGA, TIFF, XCF, XPM, XV.")
 (define-public ghc-half
   (package
     (name "ghc-half")
-    (version "0.2.2.3")
+    (version "0.3")
     (source
      (origin
        (method url-fetch)
@@ -1452,8 +1618,11 @@ PNG, PNM, TGA, TIFF, XCF, XPM, XV.")
              version ".tar.gz"))
        (sha256
         (base32
-         "0p4sb7vv9cljv48wlx65wgdnkryrk5d6yfh7g4yrm20w1p449hl5"))))
+         "14r0nx8hm5fic9gz0ybjjw4kyc758zfgvhhwvzsshpx5caq6zch6"))))
     (build-system haskell-build-system)
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)
+       ("ghc-quickcheck" ,ghc-quickcheck)))
     (home-page "https://github.com/ekmett/half")
     (synopsis "Half-precision floating-point computations")
     (description "This library provides a half-precision floating-point
@@ -1483,7 +1652,7 @@ arithmetic.")
 (define-public ghc-openglraw
   (package
     (name "ghc-openglraw")
-    (version "3.2.7.0")
+    (version "3.3.1.0")
     (source
      (origin
        (method url-fetch)
@@ -1493,7 +1662,7 @@ arithmetic.")
              ".tar.gz"))
        (sha256
         (base32
-         "024aln102d1mmsdalq9jd5mmwjbnrb8gxcak73lybrc7q87kswk2"))))
+         "1x8w3x308jldj2c1xqcq3a3sc2jc06pdpgqkgjsmixi1skv4a1vb"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-half" ,ghc-half)
@@ -1516,7 +1685,7 @@ found at runtime, a userError is thrown.")
 (define-public ghc-glut
   (package
     (name "ghc-glut")
-    (version "2.7.0.10")
+    (version "2.7.0.14")
     (source
      (origin
        (method url-fetch)
@@ -1526,7 +1695,7 @@ found at runtime, a userError is thrown.")
              ".tar.gz"))
        (sha256
         (base32
-         "0sbm943bg896nf3qjmlnsg3zzrr3pl330rzh9g0hwv47nzwwn4ab"))))
+         "01i162fly4q1751fp60lgkzlb8kr0qqbvmxj74zc6skb19qggy2w"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-statevar" ,ghc-statevar)
@@ -1543,7 +1712,7 @@ programs.")
 (define-public ghc-gluraw
   (package
     (name "ghc-gluraw")
-    (version "2.0.0.2")
+    (version "2.0.0.4")
     (source
      (origin
        (method url-fetch)
@@ -1553,7 +1722,7 @@ programs.")
              ".tar.gz"))
        (sha256
         (base32
-         "1phmvxr0kkxq89ykmr8rj77inj8dvcxd6h72z1ncdgdazfz3sjw8"))))
+         "1i2xi35n5z0d372px9mh6cyhgg1m0cfaiy3fnspkf6kbn9fgsqxq"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-openglraw" ,ghc-openglraw)))
@@ -1567,7 +1736,7 @@ basis for a nicer interface.")
 (define-public ghc-opengl
   (package
     (name "ghc-opengl")
-    (version "3.0.1.0")
+    (version "3.0.2.2")
     (source
      (origin
        (method url-fetch)
@@ -1577,7 +1746,7 @@ basis for a nicer interface.")
              ".tar.gz"))
        (sha256
         (base32
-         "1nm2mzrn1h2nnfs9vl5p088hqpll7rdvcsyqsn8q641im9jhqp7l"))))
+         "19vxwvx2n8zq2klj176l25n2b64ybp0b8mhm4p46gvpcivz41fjc"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-text" ,ghc-text)
@@ -1656,7 +1825,7 @@ unlit literate code files; and an option to turn off macro-expansion.")
 (define-public ghc-reflection
   (package
     (name "ghc-reflection")
-    (version "2.1.2")
+    (version "2.1.4")
     (source
      (origin
        (method url-fetch)
@@ -1666,7 +1835,7 @@ unlit literate code files; and an option to turn off macro-expansion.")
              ".tar.gz"))
        (sha256
         (base32
-         "0f9w0akbm6p8h7kzgcd2f6nnpw1wy84pqn45vfz1ch5j0hn8h2d9"))))
+         "0kf4a5ijw6jfnfibjcrpdy9vzh1n6v2pxia8dhyyqdissiwc8bzj"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-tagged" ,ghc-tagged)))
     (home-page "https://github.com/ekmett/reflection")
@@ -1693,7 +1862,8 @@ configurations to coexist without resorting to mutable global variables or
         (base32 "0l3viphiszvz5wqzg7a45zp40grwlab941q5ay29iyw8p3v8pbyv"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=base")))
+     `(#:cabal-revision
+       ("2" "04b9vn007hlvsrx4ksd3r8r3kbyaj2kvwxchdrmd4370qzi8p6gs")))
     (home-page "https://hackage.haskell.org/package/old-locale")
     (synopsis "Adapt to locale conventions")
     (description
@@ -1717,7 +1887,8 @@ date and time formats.")
          "1h9b26s3kfh2k0ih4383w90ibji6n0iwamxp6rfp2lbq1y5ibjqw"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=base")))
+     `(#:cabal-revision
+       ("2" "1j6ln1dkvhdvnwl33bp0xf9lhc4sybqk0aw42p8cq81xwwzbn7y9")))
     (inputs
      `(("ghc-old-locale" ,ghc-old-locale)))
     (home-page "https://hackage.haskell.org/package/old-time")
@@ -1795,10 +1966,111 @@ Writer monad), where list append quickly becomes too expensive.")
 versions of GHC (i.e., < 6.10).")
     (license license:bsd-3)))
 
+(define-public ghc-echo
+  (package
+    (name "ghc-echo")
+    (version "0.1.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/echo/echo-"
+             version ".tar.gz"))
+       (sha256
+        (base32
+         "1vw5ykpwhr39wc0hhcgq3r8dh59zq6ib4zxbz1qd2wl21wqhfkvh"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("1" "0br8wfiybcw5hand4imiw0i5hacdmrax1dv8g95f35gazffbx42l")))
+    (home-page "https://github.com/RyanGlScott/echo")
+    (synopsis "Echo terminal input portably")
+    (description "The @code{base} library exposes the @code{hGetEcho} and
+@code{hSetEcho} functions for querying and setting echo status, but
+unfortunately, neither function works with MinTTY consoles on Windows.
+This library provides an alternative interface which works with both
+MinTTY and other consoles.")
+    (license license:bsd-3)))
+
+(define-public ghc-hackage-security
+  (package
+    (name "ghc-hackage-security")
+    (version "0.5.3.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "hackage-security/hackage-security-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "08bwawc7ramgdh54vcly2m9pvfchp0ahhs8117jajni6x4bnx66v"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:tests? #f)) ; Tests fail because of framework updates.
+    (inputs
+     `(("ghc-base16-bytestring" ,ghc-base16-bytestring)
+       ("ghc-base64-bytestring" ,ghc-base64-bytestring)
+       ("ghc-cryptohash-sha256" ,ghc-cryptohash-sha256)
+       ("ghc-ed25519" ,ghc-ed25519)
+       ("ghc-network" ,ghc-network)
+       ("ghc-network-uri" ,ghc-network-uri)
+       ("ghc-parsec" ,ghc-parsec)
+       ("ghc-tar" ,ghc-tar)
+       ("ghc-zlib" ,ghc-zlib)))
+    (native-inputs
+     `(("ghc-network-uri" ,ghc-network-uri)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-tar" ,ghc-tar)
+       ("ghc-tasty" ,ghc-tasty)
+       ("ghc-tasty-hunit" ,ghc-tasty-hunit)
+       ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)
+       ("ghc-temporary" ,ghc-temporary)
+       ("ghc-zlib" ,ghc-zlib)))
+    (home-page "https://github.com/haskell/hackage-security")
+    (synopsis "Hackage security library")
+    (description "This Hackage security library provides both server and
+client utilities for securing @uref{http://hackage.haskell.org/, the
+Hackage package server}.  It is based on
+@uref{http://theupdateframework.com/, The Update Framework}, a set of
+recommendations developed by security researchers at various universities
+in the US as well as developers on the @uref{https://www.torproject.org/,
+Tor project}.")
+    (license license:bsd-3)))
+
+(define-public ghc-resolv
+  (package
+    (name "ghc-resolv")
+    (version "0.1.1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/resolv/resolv-"
+             version ".tar.gz"))
+       (sha256
+        (base32
+         "0wh7wj56l3f2bylz563g5g04a4nydj8acv60hpwa7k3mn792xca9"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("1" "15ay4n3x8c09cb3h4z1nan84yd3n9zpgvi6h114hk98bq10k8mma")
+       #:tests? #f)) ; The required test frameworks are too old.
+    (inputs
+     `(("ghc-base16-bytestring" ,ghc-base16-bytestring)))
+    (home-page "https://github.com/haskell/hackage-security")
+    (synopsis "Domain Name Service (DNS) lookup via @code{libresolv}")
+    (description "This package implements an API for accessing the
+@uref{https://tools.ietf.org/html/rfc1035, Domain Name Service (DNS)}
+resolver service via the standard @code{libresolv} system library (whose
+API is often available directly via the standard @code{libc} C library) on
+Unix systems.")
+    (license license:gpl3)))
+
 (define-public cabal-install
  (package
   (name "cabal-install")
-   (version "1.22.6.0")
+   (version "2.2.0.0")
    (source
     (origin
      (method url-fetch)
@@ -1807,16 +2079,24 @@ versions of GHC (i.e., < 6.10).")
             version
             ".tar.gz"))
       (sha256
-       (base32 "1d5h7h2wjwc2s3dvsvzjgmmfrfl2312ym2h6kyjgm9wnaqw9w8wx"))))
+       (base32 "1nd3ch7qr4dpfxhgkcq2lnhvszx2kjgnn1kwb44vk9y5jgfs4mn8"))))
    (arguments `(#:tests? #f)) ; FIXME: testing libraries are missing.
    (build-system haskell-build-system)
    (inputs
-    `(("ghc-http" ,ghc-http)
-      ("ghc-mtl" ,ghc-mtl)
+    `(("ghc-async" ,ghc-async)
+      ("ghc-base16-bytestring" ,ghc-base16-bytestring)
+      ("ghc-cryptohash-sha256" ,ghc-cryptohash-sha256)
+      ("ghc-echo" ,ghc-echo)
+      ("ghc-edit-distance" ,ghc-edit-distance)
+      ("ghc-hackage-security" ,ghc-hackage-security)
+      ("ghc-hashable" ,ghc-hashable)
+      ("ghc-http" ,ghc-http)
       ("ghc-network-uri" ,ghc-network-uri)
       ("ghc-network" ,ghc-network)
       ("ghc-random" ,ghc-random)
+      ("ghc-resolv" ,ghc-resolv)
       ("ghc-stm" ,ghc-stm)
+      ("ghc-tar" ,ghc-tar)
       ("ghc-zlib" ,ghc-zlib)))
    (home-page "https://www.haskell.org/cabal/")
    (synopsis "Command-line interface for Cabal and Hackage")
@@ -1840,6 +2120,9 @@ installation of Haskell libraries and programs.")
         (base32
          "0bgd4jdmzxq5y465r4sf4jv2ix73yvblnr4c9wyazazafddamjny"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("1" "1bk85avgc93yvcggwbk01fy8nvg6753wgmaanhkry0hz55h7mpld")))
     (home-page "https://github.com/phadej/cabal-doctest")
     (synopsis "Setup.hs helper for running doctests")
     (description
@@ -1848,37 +2131,6 @@ configuration.  This library provides the common bits for writing custom
 @file{Setup.hs} files.")
     (license license:bsd-3)))
 
-(define-public ghc-mtl
-  (package
-    (name "ghc-mtl")
-    (version "2.2.1")
-    (outputs '("out" "doc"))
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "https://hackage.haskell.org/package/mtl/mtl-"
-             version
-             ".tar.gz"))
-       (sha256
-        (base32
-         "1icdbj2rshzn0m1zz5wa7v3xvkf6qw811p4s7jgqwvx1ydwrvrfa"))))
-    (build-system haskell-build-system)
-    ;; This is an official revision, relaxing the requirement transformers ==
-    ;; 0.4 to transformers >= 0.4 && < 0.6; see
-    ;; https://hackage.haskell.org/package/mtl-2.2.1/revision/1.cabal
-    (arguments
-     `(#:configure-flags (list "--allow-newer=transformers")))
-    (home-page "https://github.com/ekmett/mtl")
-    (synopsis
-     "Monad classes, using functional dependencies")
-    (description "Monad classes using functional dependencies, with instances
-for various monad transformers, inspired by the paper 'Functional Programming
-with Overloading and Higher-Order Polymorphism', by Mark P Jones, in 'Advanced
-School of Functional Programming', 1995.  See
-@uref{https://web.cecs.pdx.edu/~mpj/pubs/springschool.html, the paper}.")
-    (license license:bsd-3)))
-
 (define-public ghc-parsec-numbers
   (package
     (name "ghc-parsec-numbers")
@@ -1938,7 +2190,8 @@ School of Functional Programming', 1995.  See
         (base32 "0h7imvxkahiy8pzr8cpsimifdfvv18lizrb33k6mnq70rcx9w2zv"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=base")))
+     `(#:cabal-revision
+       ("3" "02vhj5gykkqa2dyn7s6gn8is1b5fdn9xcqqvlls268g7cpv6rk38")))
     (home-page "https://github.com/glguy/utf8-string/")
     (synopsis "Support for reading and writing UTF8 Strings")
     (description
@@ -1971,7 +2224,7 @@ environment variables.")
 (define-public ghc-setlocale
   (package
     (name "ghc-setlocale")
-    (version "1.0.0.6")
+    (version "1.0.0.8")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1979,7 +2232,7 @@ environment variables.")
                     version "/setlocale-" version ".tar.gz"))
               (sha256
                (base32
-                "1rl8qb8vzv8fdbczy2dxwgn4cb68lfrjdxf2w8nn9wy1acqzcyjq"))))
+                "0sdrsmkhw08483d73ysgm2926fdbhii61br03lqpqw0lfzj4ilbd"))))
     (build-system haskell-build-system)
     (home-page "https://hackage.haskell.org/package/setlocale")
     (synopsis "Haskell bindings to setlocale")
@@ -1990,14 +2243,14 @@ environment variables.")
 (define-public ghc-x11
   (package
     (name "ghc-x11")
-    (version "1.8")
+    (version "1.9")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://hackage.haskell.org/package/X11/"
                            "X11-" version ".tar.gz"))
        (sha256
-        (base32 "13lxq36856fzp61y4api78vssykyh8fm2aplr0nsj18ymdm1c6sl"))))
+        (base32 "1f8dy6ckkyvpcv7zlniyv01cqjb9lgqscm8pml58cvwc7n38w4qh"))))
     (build-system haskell-build-system)
     (inputs
      `(("libx11" ,libx11)
@@ -2042,7 +2295,7 @@ parts.")
 (define-public ghc-stringbuilder
   (package
     (name "ghc-stringbuilder")
-    (version "0.5.0")
+    (version "0.5.1")
     (source
      (origin
        (method url-fetch)
@@ -2052,7 +2305,7 @@ parts.")
              ".tar.gz"))
        (sha256
         (base32
-         "1ap95xphqnrhv64c2a137wqslkdmb2jjd9ldb17gs1pw48k8hrl9"))))
+         "1fh3csx1wcssn8xyvl4ip4aprh9l4qyz2kk8mgjvqvc0vb2bsy6q"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f)) ; FIXME: circular dependencies with tests
                                ; enabled
@@ -2078,7 +2331,15 @@ literals.")
         (base32
          "1vbzf0awb6zb456xf48za1kl22018646cfzq4frvxgb9ay97vk0d"))))
     (build-system haskell-build-system)
-    (arguments `(#:configure-flags (list "--allow-newer=tasty")))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'strip-test-framework-constraints
+           (lambda _
+             (substitute* "zlib.cabal"
+               (("tasty            >= 0\\.8 && < 0\\.12") "tasty")
+               (("tasty-hunit      >= 0\\.8 && < 0\\.10") "tasty-hunit")
+               (("tasty-quickcheck == 0\\.8\\.\\*") "tasty-quickcheck")))))))
     (inputs `(("zlib" ,zlib)))
     (native-inputs
      `(("ghc-quickcheck" ,ghc-quickcheck)
@@ -2128,7 +2389,7 @@ case with other forms of concurrent communication, such as locks or
 (define-public ghc-parallel
   (package
     (name "ghc-parallel")
-    (version "3.2.1.0")
+    (version "3.2.2.0")
     (outputs '("out" "doc"))
     (source
      (origin
@@ -2139,7 +2400,7 @@ case with other forms of concurrent communication, such as locks or
              ".tar.gz"))
        (sha256
         (base32
-         "09l52k1gsn667lmv0pp052cbwkzkbhfivp51f2xkrlfzf6xwvqsd"))))
+         "1xkfi96w6yfpppd0nw1rnszdxmvifwzm699ilv6332ra3akm610p"))))
     (build-system haskell-build-system)
     (home-page "https://hackage.haskell.org/package/parallel")
     (synopsis "Parallel programming library")
@@ -2174,7 +2435,7 @@ are not exception safe and can be broken by @code{killThread}.")
 (define-public ghc-text
   (package
     (name "ghc-text")
-    (version "1.2.2.2")
+    (version "1.2.3.0")
     (outputs '("out" "doc"))
     (source
      (origin
@@ -2185,7 +2446,7 @@ are not exception safe and can be broken by @code{killThread}.")
              ".tar.gz"))
        (sha256
         (base32
-         "1y9d0zjs2ls0c574mr5xw7y3y49s62sd3wcn9lhpwz8a6q352iii"))))
+         "06iir7q99rnffzxi8gagn8w1k9m49368sbidgz634fv1gxib3q10"))))
     (build-system haskell-build-system)
     ;; The test dependencies depend on ghc-text: ghc-test-framework -> ghc-xml -> ghc-text
     (arguments `(#:tests? #f))
@@ -2249,7 +2510,7 @@ IO operations.")
 (define-public ghc-hashable
   (package
     (name "ghc-hashable")
-    (version "1.2.6.1")
+    (version "1.2.7.0")
     (outputs '("out" "doc"))
     (source
      (origin
@@ -2260,7 +2521,7 @@ IO operations.")
              ".tar.gz"))
        (sha256
         (base32
-         "0ymv2mcrrgbdc2w39rib171fwnhg7fgp0sy4h8amrh1vw64qgjll"))))
+         "1gra8gq3kb7b2sd845h55yxlrfqx3ii004c6vjhga8v0b30fzdgc"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-text" ,ghc-text)
@@ -2280,6 +2541,14 @@ data structures.  The package provides instances for basic types and a way to
 combine hash values.")
     (license license:bsd-3)))
 
+(define-public ghc-hashable-bootstrap
+  (package
+    (inherit ghc-hashable)
+    (name "ghc-hashable-bootstrap")
+    (arguments `(#:tests? #f))
+    (native-inputs '())
+    (properties '((hidden? #t)))))
+
 (define-public ghc-hashable-time
   (package
     (name "ghc-hashable-time")
@@ -2295,6 +2564,9 @@ combine hash values.")
         (base32
          "0k932nyd08l3xxbh2g3n76py2f4kd9yw4s5a065vjz0xp6wjnxdm"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("1" "0rv40xkg3gj8jnqsry1gq3f5s5la6d5arg8fzkirnwdpcgha1as6")))
     (inputs `(("ghc-hashable" ,ghc-hashable)))
     (home-page "http://hackage.haskell.org/package/hashable-time")
     (synopsis "Hashable instances for Data.Time")
@@ -2422,7 +2694,7 @@ Hashing\" by Claessen, Pałka for details and the rationale of the design.")
 (define-public ghc-transformers-base
   (package
     (name "ghc-transformers-base")
-    (version "0.4.4")
+    (version "0.4.5.2")
     (source
      (origin
        (method url-fetch)
@@ -2432,7 +2704,7 @@ Hashing\" by Claessen, Pałka for details and the rationale of the design.")
              ".tar.gz"))
        (sha256
         (base32
-         "11r3slgpgpra6zi2kjg3g60gvv17b1fh6qxipcpk8n86qx7lk8va"))))
+         "1s256bi0yh0x2hp2gwd30f3mg1cv53zz397dv1yhfsnfzmihrj6h"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-stm" ,ghc-stm)
@@ -2450,7 +2722,7 @@ compatibility to run on old versions of the platform.")
 (define-public ghc-transformers-compat
   (package
     (name "ghc-transformers-compat")
-    (version "0.5.1.4")
+    (version "0.6.2")
     (source
      (origin
        (method url-fetch)
@@ -2459,7 +2731,7 @@ compatibility to run on old versions of the platform.")
              "/transformers-compat-" version ".tar.gz"))
        (sha256
         (base32
-         "17yam0199fh9ndsn9n69jx9nvbsmymzzwbi23dck3dk4q57fz0fq"))))
+         "1gp4a8kvniwgm8947ghb4iwv4b7wd6ry4kvv4nfnym4agf5j41nw"))))
     (build-system haskell-build-system)
     (home-page "https://github.com/ekmett/transformers-compat/")
     (synopsis "Small compatibility shim between transformers 0.3 and 0.4")
@@ -2472,7 +2744,7 @@ but also need those types.")
 (define-public ghc-unix-time
   (package
     (name "ghc-unix-time")
-    (version "0.3.7")
+    (version "0.3.8")
     (source
      (origin
        (method url-fetch)
@@ -2482,7 +2754,7 @@ but also need those types.")
              ".tar.gz"))
        (sha256
         (base32
-         "1qdlc9raih8s0m3x8x3n7q3ngh4faw2alv9l78sp6gnx648k0c8i"))))
+         "051slgpid5cxiaw203ky0ql3823h28fcjs08axkzd4265wrvv8fw"))))
     (build-system haskell-build-system)
     (arguments
      `(#:tests? #f)) ; FIXME: Test fails with "System.Time not found".  This
@@ -2499,7 +2771,7 @@ for Unix time in Haskell.")
 (define-public ghc-unix-compat
   (package
     (name "ghc-unix-compat")
-    (version "0.4.2.0")
+    (version "0.5.1")
     (source
      (origin
        (method url-fetch)
@@ -2509,7 +2781,7 @@ for Unix time in Haskell.")
              ".tar.gz"))
        (sha256
         (base32
-         "036nv05w0yjxc3rfpar60ddjrlzc40mdgr5k6ihvwlvqfmq1gw9m"))))
+         "0llwl7rp63fy2ychwdclz1afj45pbin5pfl01dvn6rwhvmwhr7d3"))))
     (build-system haskell-build-system)
     (home-page
      "https://github.com/jystic/unix-compat")
@@ -2523,7 +2795,7 @@ isn't available, portable implementations are used.")
 (define-public ghc-indents
   (package
     (name "ghc-indents")
-    (version "0.3.3")
+    (version "0.5.0.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2531,12 +2803,16 @@ isn't available, portable implementations are used.")
                     version ".tar.gz"))
               (sha256
                (base32
-                "16lz21bp9j14xilnq8yym22p3saxvc9fsgfcf5awn2a6i6n527xn"))))
+                "1ly3v41jacc6lrsvg4j3m5a6zs90gr8dyif5m6bf34hj1k5cgg0n"))))
     (build-system haskell-build-system)
+    ;; This package needs an older version of tasty.
+    (arguments '(#:tests? #f))
     (inputs
      `(("ghc-parsec" ,ghc-parsec)
-       ("ghc-concatenative" ,ghc-concatenative)
-       ("ghc-mtl" ,ghc-mtl)))
+       ("ghc-concatenative" ,ghc-concatenative)))
+    (native-inputs
+     `(("ghc-tasty" ,ghc-tasty)
+       ("ghc-tasty-hunit" ,ghc-tasty-hunit)))
     (home-page "http://patch-tag.com/r/salazar/indents")
     (synopsis "Indentation sensitive parser-combinators for parsec")
     (description
@@ -2548,7 +2824,7 @@ lines continued at an indented level below.")
 (define-public ghc-iproute
   (package
     (name "ghc-iproute")
-    (version "1.7.1")
+    (version "1.7.5")
     (source
      (origin
        (method url-fetch)
@@ -2558,7 +2834,7 @@ lines continued at an indented level below.")
              ".tar.gz"))
        (sha256
         (base32
-         "1viyxq3m1aifl05w0hxwrhhhcfpmvwz4ymil2gngi4nfm0yd1f2p"))))
+         "1vw1nm3s8vz1hqnjnqd3wh5rr4q3m2r4izn5ynhf93h9185qwqzd"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f)) ; FIXME: Tests cannot find System.ByteOrder,
                                ; exported by ghc-byteorder.  Doctest issue.
@@ -2611,8 +2887,6 @@ supported systems.")
         (base32
          "0y1j4h2pg12c853nzmczs263di7xkkmlnsq5dlp5wgbgl49mgp10"))))
     (build-system haskell-build-system)
-    (inputs
-     `(("ghc-mtl" ,ghc-mtl)))
     (home-page
      "https://sourceforge.net/projects/lazy-regex")
     (synopsis "Replaces/Enhances Text.Regex")
@@ -2684,8 +2958,7 @@ Haskell library @code{regex-base}.")
     (build-system haskell-build-system)
     (inputs
      `(("ghc-regex-base" ,ghc-regex-base)
-       ("ghc-parsec" ,ghc-parsec)
-       ("ghc-mtl" ,ghc-mtl)))
+       ("ghc-parsec" ,ghc-parsec)))
     (home-page
      "https://hackage.haskell.org/package/regex-tdfa")
     (synopsis "Tagged DFA regex engine for Haskell")
@@ -2731,6 +3004,17 @@ Haskell library @code{regex-base}.")
         (base32
          "1sjkpkgv4phy5b5v2lr89x4vx4dh44pj0sbvlsp6n86w9v6v4jwb"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'relax-dependencies
+           (lambda _
+             (substitute* "regex.cabal"
+               (("base-compat.*>=.*0.6.*")
+                "base-compat >= 0.6\n")
+               (("template-haskell.*>=.*2.7.*")
+                "template-haskell >= 2.7\n"))
+             #t)))))
     (inputs
      `(("ghc-base-compat" ,ghc-base-compat)
        ("ghc-hashable" ,ghc-hashable)
@@ -2756,7 +3040,7 @@ copious examples.")
 (define-public ghc-parsers
   (package
     (name "ghc-parsers")
-    (version "0.12.4")
+    (version "0.12.9")
     (source
      (origin
        (method url-fetch)
@@ -2766,7 +3050,7 @@ copious examples.")
              ".tar.gz"))
        (sha256
         (base32
-         "07najh7f9y3ahh42z96sw4hnd0kc4x3wm0xlf739y0gh81ys5097"))))
+         "1r05sc1mcglk8w596kq9a1brfn9c2vll8lq16j07ln0vsz4jzrc1"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f)) ; FIXME: Test fails with "cannot satisfy
                                ; -package attoparsec-0.13.0.1"
@@ -2790,7 +3074,7 @@ the parsers provided by @code{parsec}, @code{attoparsec} and @code{base}'s
 (define-public ghc-trifecta
   (package
     (name "ghc-trifecta")
-    (version "1.7.1.1")
+    (version "2")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2798,11 +3082,10 @@ the parsers provided by @code{parsec}, @code{attoparsec} and @code{base}'s
                     "trifecta-" version ".tar.gz"))
               (sha256
                (base32
-                "13n6a3fdxngnzsjnhfrzigv1c2g0xm6lqkjcnirpc37sd0rpby31"))))
+                "0hznd8i65s81xy13i2qc7cvipw3lfb2yhkv53apbdsh6sbljz5sk"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-doctest" ,ghc-doctest-0.13)
-       ("ghc-reducers" ,ghc-reducers)
+     `(("ghc-reducers" ,ghc-reducers)
        ("ghc-semigroups" ,ghc-semigroups)
        ("ghc-ansi-wl-pprint" ,ghc-ansi-wl-pprint)
        ("ghc-ansi-terminal" ,ghc-ansi-terminal)
@@ -2811,18 +3094,17 @@ the parsers provided by @code{parsec}, @code{attoparsec} and @code{base}'s
        ("ghc-blaze-markup" ,ghc-blaze-markup)
        ("ghc-charset" ,ghc-charset)
        ("ghc-comonad" ,ghc-comonad)
-       ("ghc-doctest" ,ghc-doctest)
        ("ghc-fingertree" ,ghc-fingertree)
        ("ghc-hashable" ,ghc-hashable)
        ("ghc-lens" ,ghc-lens)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-parsers" ,ghc-parsers)
        ("ghc-profunctors" ,ghc-profunctors)
-       ("ghc-quickcheck" ,ghc-quickcheck)
        ("ghc-unordered-containers" ,ghc-unordered-containers)
        ("ghc-utf8-string" ,ghc-utf8-string)))
     (native-inputs
-     `(("cabal-doctest" ,cabal-doctest)))
+     `(("cabal-doctest" ,cabal-doctest)
+       ("ghc-doctest" ,ghc-doctest)
+       ("ghc-quickcheck" ,ghc-quickcheck)))
     (home-page "https://github.com/ekmett/trifecta/")
     (synopsis "Parser combinator library with convenient diagnostics")
     (description "Trifecta is a modern parser combinator library for Haskell,
@@ -2832,7 +3114,7 @@ with slicing and Clang-style colored diagnostics.")
 (define-public ghc-time-locale-compat
   (package
     (name "ghc-time-locale-compat")
-    (version "0.1.1.3")
+    (version "0.1.1.5")
     (source
      (origin
        (method url-fetch)
@@ -2841,7 +3123,7 @@ with slicing and Clang-style colored diagnostics.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "1vdcfr2hp9qh3ag90x6ikbdf42wiqpdylnplffna54bpnilbyi4i"))))
+         "0b2hmj8wwrfkndwzgm11qr496ca2ahwdxcj3m0ii91bxvrk1bzq7"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-old-locale" ,ghc-old-locale)))
     (home-page "https://github.com/khibino/haskell-time-locale-compat")
@@ -2865,10 +3147,19 @@ with slicing and Clang-style colored diagnostics.")
         (base32
          "0j6qcwd146yzlkc9mcvzvnixsyl65n2a68l28322q5v9p4g4g4yx"))))
     (build-system haskell-build-system)
-    ;; FIXME: at least on test fails with QuickCheck > 2.9.2.  Once upstream
-    ;; has updated the tests to work with a later version of QuickCheck we can
-    ;; re-enable them.
-    (arguments `(#:tests? #f))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-for-newer-quickcheck
+           (lambda _
+             (substitute* "attoparsec.cabal"
+               (("QuickCheck >= 2\\.7 && < 2\\.10")
+                "QuickCheck >= 2.7 && < 2.12"))
+             ;; This test fails because of the newer QuickCheck:
+             ;; <https://github.com/bos/attoparsec/issues/134>.
+             (substitute* "tests/QC/ByteString.hs"
+               ((", testProperty \"satisfyWith\" satisfyWith")
+                "")))))))
     (inputs
      `(("ghc-scientific" ,ghc-scientific)
        ("ghc-text" ,ghc-text)))
@@ -2885,10 +3176,21 @@ aimed particularly at dealing efficiently with network protocols and
 complicated text/binary file formats.")
     (license license:bsd-3)))
 
+(define-public ghc-attoparsec-bootstrap
+  (package
+    (inherit ghc-attoparsec)
+    (name "ghc-attoparsec-bootstrap")
+    (arguments `(#:tests? #f))
+    (inputs
+     `(("ghc-scientific" ,ghc-scientific-bootstrap)
+       ("ghc-text" ,ghc-text)))
+    (native-inputs '())
+    (properties '(hidden? #t))))
+
 (define-public ghc-zip-archive
   (package
     (name "ghc-zip-archive")
-    (version "0.3.0.5")
+    (version "0.3.3")
     (source
      (origin
        (method url-fetch)
@@ -2898,18 +3200,16 @@ complicated text/binary file formats.")
              ".tar.gz"))
        (sha256
         (base32
-         "1iwpzjck4jg9bz1yqky051i2wljsqc14q5zbi10dydfp8ip3d0yw"))))
+         "0kf8xyac168bng8a0za2jwrbss7a4ralvci9g54hnvl0gkkxx2lq"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-old-time" ,ghc-old-time)
-       ("ghc-digest" ,ghc-digest)
-       ("zip" ,zip)
-       ("ghc-mtl" ,ghc-mtl)
+     `(("ghc-digest" ,ghc-digest)
        ("ghc-temporary" ,ghc-temporary)
        ("ghc-text" ,ghc-text)
        ("ghc-zlib" ,ghc-zlib)))
     (native-inputs
-     `(("ghc-hunit" ,ghc-hunit)))
+     `(("ghc-hunit" ,ghc-hunit)
+       ("unzip" ,unzip)))
     (home-page "https://hackage.haskell.org/package/zip-archive")
     (synopsis "Zip archive library for Haskell")
     (description "The zip-archive library provides functions for creating,
@@ -2931,6 +3231,9 @@ modifying, and extracting files from zip archives in Haskell.")
         (base32
          "0y566r97sfyvhsmd4yxiz4ns2mqgwf5bdbp56wgxl6wlkidq0wwi"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("6" "06bd38rf31yrvvy989r44pm0id3dsxwcp6nxg7wk6ccj3n2b8rzk")))
     (inputs
      `(("ghc-tagged" ,ghc-tagged)
        ("ghc-base-orphans" ,ghc-base-orphans)
@@ -2939,7 +3242,7 @@ modifying, and extracting files from zip archives in Haskell.")
        ("ghc-generic-deriving" ,ghc-generic-deriving)))
     (native-inputs
      `(("cabal-doctest" ,cabal-doctest)
-       ("ghc-doctest" ,ghc-doctest-0.12)
+       ("ghc-doctest" ,ghc-doctest)
        ("ghc-hspec" ,ghc-hspec)
        ("hspec-discover" ,hspec-discover)))
     (home-page "https://github.com/ekmett/distributive/")
@@ -2951,7 +3254,7 @@ Dual to @code{Traversable}.")
 (define-public ghc-cereal
   (package
     (name "ghc-cereal")
-    (version "0.5.3.0")
+    (version "0.5.7.0")
     (source
      (origin
        (method url-fetch)
@@ -2961,7 +3264,7 @@ Dual to @code{Traversable}.")
              ".tar.gz"))
        (sha256
         (base32
-         "1x4aib7nnaf4x2b9zlndq5n5zsqniw78jifkf55nhnbmvryf05n3"))))
+         "1j7imh2mzqcljld7sx0av69699955rpy3hzivi5723i6a9nszgbs"))))
     (build-system haskell-build-system)
     (native-inputs
      `(("ghc-quickcheck" ,ghc-quickcheck)
@@ -2978,7 +3281,7 @@ parser isolation, and labeled blocks for better error messages.")
 (define-public ghc-comonad
   (package
     (name "ghc-comonad")
-    (version "5")
+    (version "5.0.4")
     (source
      (origin
        (method url-fetch)
@@ -2988,10 +3291,11 @@ parser isolation, and labeled blocks for better error messages.")
              ".tar.gz"))
        (sha256
         (base32
-         "0anb36m9z52y9xsipxzj9w1b41b2rj8r389cxd6d20dplnfv3rbq"))))
+         "09g870c4flp4k3fgbibsd0mmfjani1qcpbcl685v8x89kxzrva3q"))))
     (build-system haskell-build-system)
     (native-inputs
-     `(("ghc-doctest" ,ghc-doctest)))
+     `(("cabal-doctest" ,cabal-doctest)
+       ("ghc-doctest" ,ghc-doctest)))
     (inputs
      `(("ghc-contravariant" ,ghc-contravariant)
        ("ghc-distributive" ,ghc-distributive)
@@ -3006,7 +3310,7 @@ parser isolation, and labeled blocks for better error messages.")
 (define-public hscolour
   (package
     (name "hscolour")
-    (version "1.24.1")
+    (version "1.24.4")
     (source
      (origin
        (method url-fetch)
@@ -3016,7 +3320,7 @@ parser isolation, and labeled blocks for better error messages.")
              ".tar.gz"))
        (sha256
         (base32
-         "1j3rpzjygh3igvnd1n2xn63bq68rs047cjxr2qi6xyfnivgf6vz4"))))
+         "079jwph4bwllfp03yfr26s5zc6m6kw3nhb1cggrifh99haq34cr4"))))
     (build-system haskell-build-system)
     (home-page "https://hackage.haskell.org/package/hscolour")
     (synopsis "Script to colourise Haskell code")
@@ -3060,7 +3364,7 @@ Strings.")
 (define-public ghc-extra
   (package
     (name "ghc-extra")
-    (version "1.6.3")
+    (version "1.6.9")
     (source
      (origin
        (method url-fetch)
@@ -3070,7 +3374,7 @@ Strings.")
              ".tar.gz"))
        (sha256
         (base32
-         "06ds0jlx6sljwdf63l154qbzia9mnsri79i9qm3xikky3nj9ia1m"))))
+         "0xxcpb00pgwi9cmy6a7ghh6rblxry42p8pz5ssfgj20fs1xwzj1b"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-clock" ,ghc-clock)
@@ -3098,6 +3402,9 @@ this package makes them available back to GHC 7.2.")
         (base32
          "0s1pwjidbn761xk43pmzyvn99hm3psdifjd78ylki7f97aiyd0g9"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("2" "1ywlg9z8nlhd2avgb8c6gbkv8zyk7hvc25926bafyg0m0k8y1amq")))
     (inputs
      `(("ghc-base-orphans" ,ghc-base-orphans)
        ("ghc-bifunctors" ,ghc-bifunctors)
@@ -3114,7 +3421,7 @@ this package makes them available back to GHC 7.2.")
 (define-public ghc-reducers
   (package
     (name "ghc-reducers")
-    (version "3.12.2")
+    (version "3.12.3")
     (source
      (origin
        (method url-fetch)
@@ -3124,7 +3431,7 @@ this package makes them available back to GHC 7.2.")
              ".tar.gz"))
        (sha256
         (base32
-         "1gbaa5x4zbvnbklcb0d4q4m8hk6w0gz4s0c4m288czi1nw43dl65"))))
+         "09wf8pl9ycglcv6qj5ba26gkg2s5iy81hsx9xp0q8na0cwvp71ki"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-fingertree" ,ghc-fingertree)
@@ -3164,7 +3471,7 @@ style.")
 (define-public ghc-safe
   (package
     (name "ghc-safe")
-    (version "0.3.9")
+    (version "0.3.17")
     (source
      (origin
        (method url-fetch)
@@ -3174,8 +3481,10 @@ style.")
              ".tar.gz"))
        (sha256
         (base32
-         "1jdnp5zhvalf1xy8i872n29nljfjz6lnl9ghj80ffisrnnkrwcfh"))))
+         "0p3yaf5slvyz1cyy51jq64c5rlp8yzwim8iy2dlnk42if4gc9ibr"))))
     (build-system haskell-build-system)
+    (native-inputs
+     `(("ghc-quickcheck" ,ghc-quickcheck)))
     (home-page "https://github.com/ndmitchell/safe#readme")
     (synopsis "Library of safe (exception free) functions")
     (description "This library provides wrappers around @code{Prelude} and
@@ -3186,7 +3495,7 @@ exceptions.")
 (define-public ghc-generic-deriving
   (package
     (name "ghc-generic-deriving")
-    (version "1.11.1")
+    (version "1.12.2")
     (source
      (origin
        (method url-fetch)
@@ -3196,8 +3505,10 @@ exceptions.")
              ".tar.gz"))
        (sha256
         (base32
-         "1sdh5hpcwvh3b6zvgfk3pr3hla8p88l82njnih880c0gk5zl53dk"))))
+         "1i7d6cpj9yhaqb79zays3nqchhaacacjz9bkc0zlwj73y5gvi22n"))))
     (build-system haskell-build-system)
+    (inputs
+     `(("ghc-th-abstraction" ,ghc-th-abstraction)))
     (native-inputs
      `(("ghc-hspec" ,ghc-hspec)
        ("hspec-discover" ,hspec-discover)))
@@ -3249,7 +3560,6 @@ syntax and semantics as Perl 5.")
         (base32
          "07hnirv6snnym2r7iijlfz00b60jpy2856zvqxh989q0in7bd0hi"))))
     (build-system haskell-build-system)
-    (inputs `(("ghc-mtl" ,ghc-mtl)))
     (home-page "http://code.haskell.org/~dolio/")
     (synopsis "Backtracking logic-programming monad")
     (description "This library provides a continuation-based, backtracking,
@@ -3284,7 +3594,7 @@ online}.")
 (define-public ghc-feed
   (package
     (name "ghc-feed")
-    (version "0.3.12.0")
+    (version "1.0.0.0")
     (source
      (origin
        (method url-fetch)
@@ -3292,14 +3602,21 @@ online}.")
                            "feed/feed-" version ".tar.gz"))
        (sha256
         (base32
-         "0hkrsinspg70bbm3hwqdrvivws6zya1hyk0a3awpaz82j4xnlbfc"))))
+         "05rgg7x1984mgfhkmz792xj8lhwjgznixhygzr8blf517lns2nck"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("4" "0baavcavm3ywykcr9cm07aqr7sna98jba2n68lyn3kany8ri214d")))
     (inputs
-     `(("ghc-old-locale" ,ghc-old-locale)
+     `(("ghc-base-compat" ,ghc-base-compat)
+       ("ghc-old-locale" ,ghc-old-locale)
        ("ghc-old-time" ,ghc-old-time)
+       ("ghc-safe" ,ghc-safe)
+       ("ghc-text" ,ghc-text)
        ("ghc-time-locale-compat" ,ghc-time-locale-compat)
        ("ghc-utf8-string" ,ghc-utf8-string)
-       ("ghc-xml" ,ghc-xml)))
+       ("ghc-xml-conduit" ,ghc-xml-conduit)
+       ("ghc-xml-types" ,ghc-xml-types)))
     (native-inputs
      `(("ghc-hunit" ,ghc-hunit)
        ("ghc-test-framework" ,ghc-test-framework)
@@ -3313,7 +3630,7 @@ consuming feeds in both RSS (Really Simple Syndication) and Atom format.")
 (define-public ghc-exceptions
   (package
     (name "ghc-exceptions")
-    (version "0.8.3")
+    (version "0.10.0")
     (source
      (origin
        (method url-fetch)
@@ -3323,16 +3640,15 @@ consuming feeds in both RSS (Really Simple Syndication) and Atom format.")
              ".tar.gz"))
        (sha256
         (base32
-         "1gl7xzffsqmigam6zg0jsglncgzxqafld2p6kb7ccp9xirzdjsjd"))))
+         "1ms9zansv0pwzwdjncvx4kf18lnkjy2p61hvjhvxmjx5bqp93p8y"))))
     (build-system haskell-build-system)
-    (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck")))
     (native-inputs
-     `(("ghc-test-framework" ,ghc-test-framework)
+     `(("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
        ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
     (inputs
      `(("ghc-stm" ,ghc-stm)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-transformers-compat" ,ghc-transformers-compat)))
     (home-page "https://github.com/ekmett/exceptions/")
     (synopsis "Extensible optionally-pure exceptions")
@@ -3343,7 +3659,7 @@ for Haskell.")
 (define-public ghc-temporary
   (package
     (name "ghc-temporary")
-    (version "1.2.0.4")
+    (version "1.3")
     (source
      (origin
        (method url-fetch)
@@ -3353,9 +3669,15 @@ for Haskell.")
              ".tar.gz"))
        (sha256
         (base32
-         "0qk741yqnpd69sksgks2vb7zi50rglp9m498lzw4sh268a017rsi"))))
+         "144qhwfwg37l3k313raf4ssiz16jbgwlm1nf4flgqpsbd69jji4c"))))
     (build-system haskell-build-system)
-    (inputs `(("ghc-exceptions" ,ghc-exceptions)))
+    (inputs
+     `(("ghc-exceptions" ,ghc-exceptions)
+       ("ghc-random" ,ghc-random)))
+    (native-inputs
+     `(("ghc-base-compat" ,ghc-base-compat)
+       ("ghc-tasty" ,ghc-tasty)
+       ("ghc-tasty-hunit" ,ghc-tasty-hunit)))
     (home-page "https://www.github.com/batterseapower/temporary")
     (synopsis "Temporary file and directory support")
     (description "The functions for creating temporary files and directories
@@ -3410,8 +3732,7 @@ This is a better maintained fork of the \"temporary\" package.")
          "195fj7w3v03d1y1nm2ylavzrwxjcdbq0lb6zsw1dwyx5jmwfc84h"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-logict" ,ghc-logict)
-       ("ghc-mtl" ,ghc-mtl)))
+     `(("ghc-logict" ,ghc-logict)))
     (home-page
      "https://github.com/feuerbach/smallcheck")
     (synopsis "Property-based testing library")
@@ -3447,7 +3768,7 @@ writing to stdout and other handles.")
 (define-public ghc-case-insensitive
   (package
     (name "ghc-case-insensitive")
-    (version "1.2.0.7")
+    (version "1.2.0.11")
     (outputs '("out" "doc"))
     (source
      (origin
@@ -3458,7 +3779,7 @@ writing to stdout and other handles.")
              ".tar.gz"))
        (sha256
         (base32
-         "1j6ahvrz1g5q89y2difyk838yhwjc8z67zr0v2z512qdznc3h38n"))))
+         "1qrpxfirsxckg7jv28f5ah2qc8lh95hp7rnqkbqs1ahcwlbnvkm7"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-hunit" ,ghc-hunit)))
@@ -3481,7 +3802,7 @@ to cases.")
 (define-public ghc-syb
   (package
     (name "ghc-syb")
-    (version "0.6")
+    (version "0.7")
     (outputs '("out" "doc"))
     (source
      (origin
@@ -3492,11 +3813,10 @@ to cases.")
              ".tar.gz"))
        (sha256
         (base32
-         "1p3cnqjm13677r4a966zffzhi9b3a321aln8zs8ckqj0d9z1z3d3"))))
+         "1da2zz7gqm4xbkx5vpd74dayx1svaxyl145fl14mq15lbb77sxdq"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-hunit" ,ghc-hunit)
-       ("ghc-mtl" ,ghc-mtl)))
+     `(("ghc-hunit" ,ghc-hunit)))
     (home-page
      "http://www.cs.uu.nl/wiki/GenericProgramming/SYB")
     (synopsis "Scrap Your Boilerplate")
@@ -3525,11 +3845,17 @@ variety of traversals.")
          "1i6cp4b3w7sjk7y1dq3fh6bci2sm5h3lnbbaw9ln19nwncg2wwll"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck"
-                               "--allow-newer=hspec")))
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "fgl.cabal"
+               (("QuickCheck >= 2\\.8 && < 2\\.10")
+                "QuickCheck >= 2.8 && < 2.12")
+               (("hspec >= 2\\.1 && < 2\\.5")
+                "hspec >= 2.1 && < 2.6")))))))
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-hspec" ,ghc-hspec)
+     `(("ghc-hspec" ,ghc-hspec)
        ("ghc-quickcheck" ,ghc-quickcheck)))
     (home-page "https://web.engr.oregonstate.edu/~erwig/fgl/haskell")
     (synopsis
@@ -3543,7 +3869,7 @@ encourages inductive, recursive definitions of graph algorithms.")
 (define-public ghc-chasingbottoms
   (package
     (name "ghc-chasingbottoms")
-    (version "1.3.1.3")
+    (version "1.3.1.4")
     (source
      (origin
        (method url-fetch)
@@ -3551,11 +3877,10 @@ encourages inductive, recursive definitions of graph algorithms.")
                            "ChasingBottoms-" version ".tar.gz"))
        (sha256
         (base32
-         "04jwwjs22mqc4hvpp4c3gpb79inrrq5sapks5khknspv2hslm61q"))))
+         "06cynx6hcbfpky7qq3b3mjjgwbnaxkwin3znbwq4b9ikiw0ng633"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-quickcheck" ,ghc-quickcheck)
+     `(("ghc-quickcheck" ,ghc-quickcheck)
        ("ghc-random" ,ghc-random)
        ("ghc-syb" ,ghc-syb)))
     (home-page "https://hackage.haskell.org/package/ChasingBottoms")
@@ -3574,7 +3899,7 @@ Partial and Infinite Values\"}.")
 (define-public ghc-unordered-containers
   (package
     (name "ghc-unordered-containers")
-    (version "0.2.7.1")
+    (version "0.2.9.0")
     (outputs '("out" "doc"))
     (source
      (origin
@@ -3584,7 +3909,7 @@ Partial and Infinite Values\"}.")
              "/unordered-containers-" version ".tar.gz"))
        (sha256
         (base32
-         "00npqiphivjp2d7ryqsdavfn4m5v3w1lq2azhdsrfh0wsvqpg4ig"))))
+         "0l4264p0av12cc6i8gls13q8y27x12z2ar4x34n3x59y99fcnc37"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-chasingbottoms" ,ghc-chasingbottoms)
@@ -3604,6 +3929,15 @@ optimized for performance critical use, both in terms of large data quantities
 and high speed.")
     (license license:bsd-3)))
 
+(define-public ghc-unordered-containers-bootstrap
+  (package
+    (inherit ghc-unordered-containers)
+    (name "ghc-unordered-containers-bootstrap")
+    (arguments `(#:tests? #f))
+    (inputs
+     `(("ghc-hashable" ,ghc-hashable-bootstrap)))
+    (properties '(hidden? #t))))
+
 (define-public ghc-uniplate
   (package
     (name "ghc-uniplate")
@@ -3680,7 +4014,7 @@ a variety of ways.")
 (define-public ghc-wl-pprint
   (package
     (name "ghc-wl-pprint")
-    (version "1.2")
+    (version "1.2.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -3688,7 +4022,7 @@ a variety of ways.")
                     version ".tar.gz"))
               (sha256
                (base32
-                "166zvk4zwn2zaa9kx66m1av38m34qp6h4i65bri2sfnxgvx0700r"))))
+                "0kn7y8pdrv8f87zhd5mifcl8fy3b2zvnzmzwhdqhxxlyzwiq6z0c"))))
     (build-system haskell-build-system)
     (home-page "https://hackage.haskell.org/package/wl-pprint")
     (synopsis "Wadler/Leijen pretty printer")
@@ -3724,7 +4058,7 @@ colored output using the ansi-terminal package.")
 (define-public ghc-split
   (package
     (name "ghc-split")
-    (version "0.2.3.1")
+    (version "0.2.3.3")
     (outputs '("out" "doc"))
     (source
      (origin
@@ -3735,7 +4069,7 @@ colored output using the ansi-terminal package.")
              ".tar.gz"))
        (sha256
         (base32
-         "12660m16c6sib3laaxn6w9s453pyx1b49myrmzfij372vq5bc5bn"))))
+         "04qlmkcyklznl03gsjg95b4nzb6i96gdapqg60rny9szgi7ngk8x"))))
     (build-system haskell-build-system)
     (native-inputs
      `(("ghc-quickcheck" ,ghc-quickcheck)))
@@ -3749,7 +4083,7 @@ mainstream languages.")
 (define-public ghc-parsec
   (package
     (name "ghc-parsec")
-    (version "3.1.11")
+    (version "3.1.13.0")
     (outputs '("out" "doc"))
     (source
      (origin
@@ -3759,13 +4093,12 @@ mainstream languages.")
              version
              ".tar.gz"))
        (sha256
-        (base32 "0vk7q9j2128q191zf1sg0ylj9s9djwayqk9747k0a5fin4f2b1vg"))))
+        (base32 "1wc09pyn70p8z6llink10c8pqbh6ikyk554911yfwxv1g91swqbq"))))
     (build-system haskell-build-system)
     (native-inputs
      `(("ghc-hunit" ,ghc-hunit)))
     (inputs
-     `(("ghc-text" ,ghc-text)
-       ("ghc-mtl" ,ghc-mtl)))
+     `(("ghc-text" ,ghc-text)))
     (arguments
      `(#:tests? #f)) ; FIXME: currently missing libraries used for tests.
     (home-page
@@ -3780,7 +4113,7 @@ is also parametric in the input stream type.")
 (define-public ghc-parser-combinators
   (package
     (name "ghc-parser-combinators")
-    (version "0.4.0")
+    (version "1.0.0")
     (source
      (origin
        (method url-fetch)
@@ -3789,7 +4122,7 @@ is also parametric in the input stream type.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "1azkz0a6ikym02s8wydjcklp7rz8k512bs4s9lp9g1g03m0yj95i"))))
+         "1pwfdsklqwvaynwpdzmx1bs35mp6dpsyaqdnzxnqcrxwf5h8sk75"))))
     (build-system haskell-build-system)
     (home-page "https://github.com/mrkkrp/parser-combinators")
     (synopsis "Commonly useful parser combinators")
@@ -3801,7 +4134,7 @@ combinators.")
 (define-public ghc-megaparsec
   (package
     (name "ghc-megaparsec")
-    (version "6.4.0")
+    (version "6.5.0")
     (source
      (origin
        (method url-fetch)
@@ -3810,11 +4143,13 @@ combinators.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "0h9azhs0dfrc359vrbd1jljrg3yfdbwd4p62cxqkn7mnh8913jpd"))))
+         "12iggy7qpf8x93jm64zf0g215xwy779bqyfyjk2bhmxqqr1yzgdy"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("4" "0ij3asi5vwlhbgwsy6nhli9a0qb7926mg809fsgyl1rnhs9fvpx1")))
     (inputs
      `(("ghc-case-insensitive" ,ghc-case-insensitive)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-parser-combinators" ,ghc-parser-combinators)
        ("ghc-scientific" ,ghc-scientific)
        ("ghc-text" ,ghc-text)))
@@ -3849,7 +4184,10 @@ speed, flexibility, and quality of parse errors.")
     (build-system haskell-build-system)
     ;; FIXME: To simplify upgrading all Haskell packages, we leave the tests
     ;; disabled for now.
-    (arguments `(#:tests? #f))
+    (arguments
+     `(#:cabal-revision
+       ("3" "0y5rh8k710i2a3p1h2rghvr5cfg78p5h0kbfi7ifxqqf6pzlyr1x")
+       #:tests? #f))
     (inputs
      `(("ghc-primitive" ,ghc-primitive)
        ("ghc-random" ,ghc-random)
@@ -3881,6 +4219,9 @@ optimisation framework.")
         (base32
          "1y236jb72iab9ska1mc48z6yb0xgwmj45laaqdyjxksd84z7hbrb"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("1" "196frl4akhfk7xf1nxzn8lmq99dxhzhsimanswn9yy7ym8zhki4i")))
     (inputs
      `(("ghc-vector" ,ghc-vector)))
     (native-inputs
@@ -3923,7 +4264,7 @@ interface.")
 (define-public ghc-network
   (package
     (name "ghc-network")
-    (version "2.6.3.1")
+    (version "2.6.3.6")
     (outputs '("out" "doc"))
     (source
      (origin
@@ -3934,7 +4275,7 @@ interface.")
              ".tar.gz"))
        (sha256
         (base32
-         "1rl2gl37cf4k0ddsq93q15fwdz1l25nhl4w205krbh7d5dg5y12p"))))
+         "198mam7ahny48p9fajznbqq16a8ya2gw0xm3gnm1si1rmc4hdplv"))))
     (build-system haskell-build-system)
     ;; The regression tests depend on an unpublished module.
     (arguments `(#:tests? #f))
@@ -3983,7 +4324,7 @@ package into this package.")
 (define-public ghc-ansi-terminal
   (package
     (name "ghc-ansi-terminal")
-    (version "0.6.2.3")
+    (version "0.8.0.4")
     (source
      (origin
        (method url-fetch)
@@ -3993,8 +4334,10 @@ package into this package.")
              ".tar.gz"))
        (sha256
         (base32
-         "0hpfw0k025y681m9ml1c712skrb1p4vh7z5x1f0ci9ww7ssjrh2d"))))
+         "0428gq8m3fdnb7ldcsyk97qcch76hcxbgh2666p6f76fs2qbhg7b"))))
     (build-system haskell-build-system)
+    (inputs
+     `(("ghc-colour" ,ghc-colour)))
     (home-page "https://github.com/feuerbach/ansi-terminal")
     (synopsis "ANSI terminal support for Haskell")
     (description "This package provides ANSI terminal support for Haskell.  It
@@ -4005,7 +4348,7 @@ cursor, and changing the title.")
 (define-public ghc-vault
   (package
     (name "ghc-vault")
-    (version "0.3.0.6")
+    (version "0.3.1.2")
     (source
      (origin
        (method url-fetch)
@@ -4015,11 +4358,12 @@ cursor, and changing the title.")
              ".tar.gz"))
        (sha256
         (base32
-         "0j7gcs440q7qlgzi2hn36crgp2c0w69k40g6vj9hxlm31zk3shqb"))))
+         "072mbrihsdsb8c6xvg6lvk0rqjgvxvi8qkg4n6wwym5hq0pfa04y"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-unordered-containers" ,ghc-unordered-containers)
-       ("ghc-hashable" ,ghc-hashable)))
+       ("ghc-hashable" ,ghc-hashable)
+       ("ghc-semigroupoids" ,ghc-semigroupoids)))
     (home-page
      "https://github.com/HeinrichApfelmus/vault")
     (synopsis "Persistent store for arbitrary values")
@@ -4043,7 +4387,6 @@ representing a store for a single element.")
        (sha256
         (base32 "0vmmlsj8ggbpwx6fkf5fvb6jp0zpx6iba6b28m80lllr2p8bi8wm"))))
     (build-system haskell-build-system)
-    (inputs `(("ghc-mtl" ,ghc-mtl)))
     (home-page "http://rwd.rdockins.name/edison/home/")
     (synopsis "Library of efficient, purely-functional data structures (API)")
     (description
@@ -4059,18 +4402,17 @@ finite maps and priority queues where the priority and element are distinct.")
 (define-public ghc-edisoncore
   (package
     (name "ghc-edisoncore")
-    (version "1.3.1.1")
+    (version "1.3.2.1")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://hackage.haskell.org/package/EdisonCore"
                            "/EdisonCore-" version ".tar.gz"))
        (sha256
-        (base32 "06shxmcqxcahcn6zgl64vlqix4fnq53d97drcgsh94qp7gp201ry"))))
+        (base32 "0fgj5iwiv3v2gdgx7kjcr15dcs4x1kvmjspp3p99wyhh0x6h3ikk"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-quickcheck" ,ghc-quickcheck)
+     `(("ghc-quickcheck" ,ghc-quickcheck)
        ("ghc-edisonapi" ,ghc-edisonapi)))
     (home-page "http://rwd.rdockins.name/edison/home/")
     (synopsis "Library of efficient, purely-functional data structures")
@@ -4083,7 +4425,7 @@ with various performance characteristics.")
 (define-public ghc-mmorph
   (package
     (name "ghc-mmorph")
-    (version "1.0.6")
+    (version "1.1.2")
     (source
      (origin
        (method url-fetch)
@@ -4093,11 +4435,10 @@ with various performance characteristics.")
              ".tar.gz"))
        (sha256
         (base32
-         "1i8dzrc5qi3ryc9vrrmpn3sihmramsbhhd592w4w2k5g26qr3hql"))))
+         "1gjz1ib968lqybma7my1n19qq6cdj6a7nskrlnwy4jy9jrwzs2n9"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-transformers-compat" ,ghc-transformers-compat)))
+     `(("ghc-transformers-compat" ,ghc-transformers-compat)))
     (home-page "https://hackage.haskell.org/package/mmorph")
     (synopsis "Monad morphisms")
     (description
@@ -4118,7 +4459,6 @@ manipulating monad transformer stacks.")
         (base32
          "1kfx1bwfjczj93a8yqz1n8snqiq5655qgzwv1lrycry8wb1vzlwa"))))
     (build-system haskell-build-system)
-    (inputs `(("ghc-mtl" ,ghc-mtl)))
     (home-page "http://hackage.haskell.org/package/IfElse")
     (synopsis "Monadic control flow with anaphoric variants")
     (description "This library provides functions for control flow inside of
@@ -4129,7 +4469,7 @@ monads with anaphoric variants on @code{if} and @code{when} and a C-like
 (define-public ghc-monad-control
   (package
     (name "ghc-monad-control")
-    (version "1.0.1.0")
+    (version "1.0.2.3")
     (source
      (origin
        (method url-fetch)
@@ -4138,7 +4478,7 @@ monads with anaphoric variants on @code{if} and @code{when} and a C-like
              "/monad-control-" version ".tar.gz"))
        (sha256
         (base32
-         "1x018gi5irznx5rgzmkr2nrgh26r8cvqwkcfc6n6y05pdjf21c6l"))))
+         "1c92833gr6cadidjdp8mlznkpp8lyxl0w3y7d19y8yi3klc3843c"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-stm" ,ghc-stm)
@@ -4224,7 +4564,7 @@ system.")
 (define-public ghc-base-compat
   (package
     (name "ghc-base-compat")
-    (version "0.9.3")
+    (version "0.10.4")
     (source
      (origin
        (method url-fetch)
@@ -4234,7 +4574,7 @@ system.")
              ".tar.gz"))
        (sha256
         (base32
-         "0452l6zf6fjhy4kxqwv6i6hhg6yfx4wcg450k3axpyj30l7jnq3x"))))
+         "0ksp990gxs731mq19rzbxrbs43nazfljjc8krlx5bjqblw3kfs8d"))))
     (build-system haskell-build-system)
     (native-inputs
      `(("ghc-quickcheck" ,ghc-quickcheck)
@@ -4250,7 +4590,7 @@ pragmas in your code.")
 (define-public ghc-blaze-builder
   (package
     (name "ghc-blaze-builder")
-    (version "0.4.0.2")
+    (version "0.4.1.0")
     (source
      (origin
        (method url-fetch)
@@ -4260,7 +4600,7 @@ pragmas in your code.")
              ".tar.gz"))
        (sha256
         (base32
-         "1m33y6p5xldni8p4fzg8fmsyqvkfmnimdamr1xjnsmgm3dkf9lws"))))
+         "05681dih2d8s96an945wkbwl05w8ddbcfx8n3r3ck79ydyb8pz4i"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f))          ; FIXME: Missing test libraries.
     (inputs
@@ -4278,7 +4618,7 @@ interoperate with code that uses the new implementation.")
 (define-public ghc-blaze-markup
   (package
     (name "ghc-blaze-markup")
-    (version "0.8.2.0")
+    (version "0.8.2.1")
     (source
      (origin
        (method url-fetch)
@@ -4287,8 +4627,16 @@ interoperate with code that uses the new implementation.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "0m3h3ryxj5r74mv5g5dnfq5jbbwmvkl7ray18vi20d5vd93sydj4"))))
+         "0ih1c3qahkdgzbqihdhny5s313l2m66fbb88w8jbx7yz56y7rawh"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "blaze-markup.cabal"
+               (("tasty            >= 1\\.0  && < 1\\.1")
+                "tasty            >= 1.0  && < 1.2")))))))
     (inputs
      `(("ghc-blaze-builder" ,ghc-blaze-builder)
        ("ghc-text" ,ghc-text)))
@@ -4307,7 +4655,7 @@ library for Haskell.")
 (define-public ghc-easy-file
   (package
     (name "ghc-easy-file")
-    (version "0.2.1")
+    (version "0.2.2")
     (source
      (origin
        (method url-fetch)
@@ -4317,7 +4665,7 @@ library for Haskell.")
              ".tar.gz"))
        (sha256
         (base32
-         "0v75081bx4qzlqy29hh639nzlr7dncwza3qxbzm9njc4jarf31pz"))))
+         "0zmlcz723051qpn8l8vi51c5rx1blwrw4094jcshkmj8p9r2xxaj"))))
     (build-system haskell-build-system)
     (home-page
      "https://github.com/kazu-yamamoto/easy-file")
@@ -4328,7 +4676,7 @@ library for Haskell.")
 (define-public ghc-async
   (package
     (name "ghc-async")
-    (version "2.1.1.1")
+    (version "2.2.1")
     (source
      (origin
        (method url-fetch)
@@ -4338,10 +4686,11 @@ library for Haskell.")
              ".tar.gz"))
        (sha256
         (base32
-         "1qj4fp1ynwg0l453gmm27vgkzb5k5m2hzdlg5rdqi9kf8rqy90yd"))))
+         "09whscli1q5z7lzyq9rfk0bq1ydplh6pjmc6qv0x668k5818c2wg"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-stm" ,ghc-stm)
+       ("ghc-hashable" ,ghc-hashable)
        ("ghc-hunit" ,ghc-hunit)
        ("ghc-test-framework" ,ghc-test-framework)
        ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)))
@@ -4356,7 +4705,7 @@ will eventually deliver a value of type @code{a}.")
 (define-public ghc-fingertree
   (package
     (name "ghc-fingertree")
-    (version "0.1.3.0")
+    (version "0.1.4.1")
     (source
      (origin
        (method url-fetch)
@@ -4365,7 +4714,7 @@ will eventually deliver a value of type @code{a}.")
              version ".tar.gz"))
        (sha256
         (base32
-         "1ryjj7qrx70ckcjlr02x9zh86kfp76azbxq05r7hawqkaqg44sfs"))))
+         "192fyzv0pn1437wdpqg1l80rswkk4rw3w61r4bq7dhv354bdqy4p"))))
     (build-system haskell-build-system)
     (native-inputs
      `(("ghc-hunit" ,ghc-hunit)
@@ -4410,7 +4759,7 @@ command line options in Haskell.")
 (define-public ghc-base-orphans
   (package
     (name "ghc-base-orphans")
-    (version "0.6")
+    (version "0.7")
     (source
      (origin
        (method url-fetch)
@@ -4420,7 +4769,7 @@ command line options in Haskell.")
              ".tar.gz"))
        (sha256
         (base32
-         "03mdww5j0gwai7aqlx3m71ldmjcr99jzpkcclzjfclk6a6kjla67"))))
+         "057f9npnqk71ccfh95djfkpd54dzazphj06grwxa3fyhwcwxrb8a"))))
     (build-system haskell-build-system)
     (native-inputs
      `(("ghc-quickcheck" ,ghc-quickcheck)
@@ -4468,6 +4817,9 @@ periodic, on-demand actions in Haskell.")
         (base32
          "16cdzh0bw16nvjnyyy5j9s60malhz4nnazw96vxb0xzdap4m2z74"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("2" "0r2knfcq0b4s652vlvlnfwxlc2mkc2ra9kl8bp4zdn1awmfy0ia5")))
     (inputs
      `(("ghc-transformers-compat" ,ghc-transformers-compat)))
     (home-page "https://hackage.haskell.org/package/tagged")
@@ -4479,7 +4831,7 @@ having to unsafely pass dummy arguments.")
 (define-public ghc-unbounded-delays
   (package
     (name "ghc-unbounded-delays")
-    (version "0.1.0.9")
+    (version "0.1.1.0")
     (source
      (origin
        (method url-fetch)
@@ -4489,7 +4841,7 @@ having to unsafely pass dummy arguments.")
              ".tar.gz"))
        (sha256
         (base32
-         "1f4h87503m3smhip432q027wj3zih18pmz2rnafh60589ifcl420"))))
+         "1ir9fghbrc214c97bwafk5ck6cacxz1pdnq4i18p604d1b8zg9wa"))))
     (build-system haskell-build-system)
     (home-page "https://github.com/basvandijk/unbounded-delays")
     (synopsis "Unbounded thread delays and timeouts")
@@ -4571,7 +4923,7 @@ Compatibility package for older packages.")
 (define-public ghc-nats
   (package
     (name "ghc-nats")
-    (version "1.1.1")
+    (version "1.1.2")
     (source
      (origin
        (method url-fetch)
@@ -4581,7 +4933,7 @@ Compatibility package for older packages.")
              ".tar.gz"))
        (sha256
         (base32
-         "1kfl2yy97nb7q0j17v96rl73xvi3z4db9bk0xychc76dax41n78k"))))
+         "1v40drmhixck3pz3mdfghamh73l4rp71mzcviipv1y8jhrfxilmr"))))
     (build-system haskell-build-system)
     (arguments `(#:haddock? #f))
     (inputs
@@ -4591,10 +4943,18 @@ Compatibility package for older packages.")
     (description "This library provides the natural numbers for Haskell.")
     (license license:bsd-3)))
 
+(define-public ghc-nats-bootstrap
+  (package
+    (inherit ghc-nats)
+    (name "ghc-nats-bootstrap")
+    (inputs
+     `(("ghc-hashable" ,ghc-hashable-bootstrap)))
+    (properties '((hidden? #t)))))
+
 (define-public ghc-void
   (package
     (name "ghc-void")
-    (version "0.7.1")
+    (version "0.7.2")
     (source
      (origin
        (method url-fetch)
@@ -4604,7 +4964,7 @@ Compatibility package for older packages.")
              ".tar.gz"))
        (sha256
         (base32
-         "1x15x2axz84ndw2bf60vjqljhrb0w95lddaljsxrl0hcd29zvw69"))))
+         "0aygw0yb1h3yhmfl3bkwh5d3h0l4mmsxz7j53vdm6jryl1kgxzyk"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-semigroups" ,ghc-semigroups)
@@ -4617,10 +4977,47 @@ Compatibility package for older packages.")
 given term should not exist.")
     (license license:bsd-3)))
 
+(define-public ghc-invariant
+  (package
+    (name "ghc-invariant")
+    (version "0.5.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/invariant/invariant-"
+             version ".tar.gz"))
+       (sha256
+        (base32
+         "0aqj7z55632qdg45074kgn9qfdxzb0a2f8lgjzr0l0i4mm2rr37b"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-bifunctors" ,ghc-bifunctors)
+       ("ghc-comonad" ,ghc-comonad)
+       ("ghc-contravariant" ,ghc-contravariant)
+       ("ghc-profunctors" ,ghc-profunctors)
+       ("ghc-semigroups" ,ghc-semigroups)
+       ("ghc-statevar" ,ghc-statevar)
+       ("ghc-stm" ,ghc-stm)
+       ("ghc-tagged" ,ghc-tagged)
+       ("ghc-th-abstraction" ,ghc-th-abstraction)
+       ("ghc-transformers-compat" ,ghc-transformers-compat)
+       ("ghc-unordered-containers" ,ghc-unordered-containers)))
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("hspec-discover" ,hspec-discover)))
+    (home-page "https://github.com/nfrisby/invariant-functors")
+    (synopsis "Haskell98 invariant functors")
+    (description "Haskell98 invariant functors (also known as exponential
+functors).  For more information, see Edward Kmett's article
+@uref{http://comonad.com/reader/2008/rotten-bananas/, Rotten Bananas}.")
+    (license license:bsd-2)))
+
 (define-public ghc-kan-extensions
   (package
     (name "ghc-kan-extensions")
-    (version "5.0.1")
+    (version "5.2")
     (source
      (origin
        (method url-fetch)
@@ -4630,7 +5027,7 @@ given term should not exist.")
              ".tar.gz"))
        (sha256
         (base32
-         "1qm0kf4krmyjbjynn96ab0h3q117vwcia5nin7n2b8b4f3jrzph1"))))
+         "1lyvyiwwh962j2nnnsqzlvp5zq6z8p3spvhmji99cjvldxc7wwkb"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-adjunctions" ,ghc-adjunctions)
@@ -4638,9 +5035,10 @@ given term should not exist.")
        ("ghc-contravariant" ,ghc-contravariant)
        ("ghc-distributive" ,ghc-distributive)
        ("ghc-free" ,ghc-free)
-       ("ghc-mtl" ,ghc-mtl)
+       ("ghc-invariant" ,ghc-invariant)
        ("ghc-semigroupoids" ,ghc-semigroupoids)
-       ("ghc-tagged" ,ghc-tagged)))
+       ("ghc-tagged" ,ghc-tagged)
+       ("ghc-transformers-compat" ,ghc-transformers-compat)))
     (home-page "https://github.com/ekmett/kan-extensions/")
     (synopsis "Kan extensions library")
     (description "This library provides Kan extensions, Kan lifts, various
@@ -4679,7 +5077,7 @@ call stacks with different versions of the compiler.")
 (define-public ghc-statevar
   (package
     (name "ghc-statevar")
-    (version "1.1.0.4")
+    (version "1.1.1.1")
     (source
      (origin
        (method url-fetch)
@@ -4689,7 +5087,7 @@ call stacks with different versions of the compiler.")
              ".tar.gz"))
        (sha256
         (base32
-         "1dzz9l0haswgag9x56q7n57kw18v7nhmzkjyr61nz9y9npn8vmks"))))
+         "08r2iw0gdmfs4f6wraaq19vfmkjdbics3dbhw39y7mdjd98kcr7b"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-stm" ,ghc-stm)))
@@ -4702,7 +5100,7 @@ in the @code{IO} monad, like @code{IORef}s or parts of the OpenGL state.")
 (define-public ghc-lens
   (package
     (name "ghc-lens")
-    (version "4.15.4")
+    (version "4.16.1")
     (source
      (origin
        (method url-fetch)
@@ -4710,12 +5108,14 @@ in the @code{IO} monad, like @code{IORef}s or parts of the OpenGL state.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "1lkwlnhgpgnsz046mw4qs0fa7h4l012gilrr3nf3spllsy3pnbkl"))))
+         "1im4drhbydbawd6i0jsrzpqihnmx4ywpkg7yg94ddwsw3mxwkgpm"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("2" "11h83lj5mba4grhz1qx3irz10ysm9c3k7k6i6xv2cr60q8xin3ri")))
     (inputs
      `(("ghc-base-orphans" ,ghc-base-orphans)
        ("ghc-bifunctors" ,ghc-bifunctors)
-       ("ghc-doctest" ,ghc-doctest-0.13)
        ("ghc-distributive" ,ghc-distributive)
        ("ghc-exceptions" ,ghc-exceptions)
        ("ghc-free" ,ghc-free)
@@ -4728,7 +5128,6 @@ in the @code{IO} monad, like @code{IORef}s or parts of the OpenGL state.")
        ("ghc-comonad" ,ghc-comonad)
        ("ghc-contravariant" ,ghc-contravariant)
        ("ghc-hashable" ,ghc-hashable)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-profunctors" ,ghc-profunctors)
        ("ghc-semigroups" ,ghc-semigroups)
        ("ghc-tagged" ,ghc-tagged)
@@ -4742,6 +5141,7 @@ in the @code{IO} monad, like @code{IORef}s or parts of the OpenGL state.")
        ("hlint" ,hlint)))
     (native-inputs
      `(("cabal-doctest" ,cabal-doctest)
+       ("ghc-doctest" ,ghc-doctest)
        ("ghc-hunit" ,ghc-hunit)
        ("ghc-test-framework" ,ghc-test-framework)
        ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
@@ -4772,8 +5172,7 @@ indexed variants.")
          "1hiqi7h76shjzs2zj0j8g6wnq2hbiq1hmfafdazr97fba2zl2432"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-text" ,ghc-text)
+     `(("ghc-text" ,ghc-text)
        ("ghc-blaze-html" ,ghc-blaze-html)
        ("ghc-xss-sanitize" ,ghc-xss-sanitize)
        ("ghc-data-default" ,ghc-data-default)
@@ -4791,7 +5190,7 @@ cross-site scripting (@dfn{XSS}) attacks.")
 (define-public ghc-bifunctors
   (package
     (name "ghc-bifunctors")
-    (version "5.5.2")
+    (version "5.5.3")
     (source
      (origin
        (method url-fetch)
@@ -4801,7 +5200,7 @@ cross-site scripting (@dfn{XSS}) attacks.")
              ".tar.gz"))
        (sha256
         (base32
-         "04fbsysm6zl8kmvqgffmrqa9bxl9dl2gibrd51asqzg737mb4ark"))))
+         "1jn9rxg643xnlhrknmjz88nblcpsr45xwjkwwnn5nxpasa7m4d6l"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-base-orphans" ,ghc-base-orphans)
@@ -4822,7 +5221,7 @@ cross-site scripting (@dfn{XSS}) attacks.")
 (define-public ghc-semigroupoids
   (package
     (name "ghc-semigroupoids")
-    (version "5.1")
+    (version "5.2.2")
     (source
      (origin
        (method url-fetch)
@@ -4832,9 +5231,11 @@ cross-site scripting (@dfn{XSS}) attacks.")
              ".tar.gz"))
        (sha256
         (base32
-         "0dgqc59p4xx5cl8qkpm6sn4wd3n59rq7l6din76hf10bnklqrb0n"))))
+         "17i96y4iqj8clcs090lf6k0ij3j16nj14vsfwz0mm9nd6i4gbpp4"))))
     (build-system haskell-build-system)
-    (arguments `(#:tests? #f)) ; FIXME: doctest packagedb propagation problem.
+    (arguments
+     `(#:cabal-revision
+       ("4" "0pqfrxzypjq6z8lgdkzq4vhcyqkpk5326hny0r6snpc3gm78r4ij")))
     (inputs
      `(("ghc-base-orphans" ,ghc-base-orphans)
        ("ghc-transformers-compat" ,ghc-transformers-compat)
@@ -4842,8 +5243,13 @@ cross-site scripting (@dfn{XSS}) attacks.")
        ("ghc-comonad" ,ghc-comonad)
        ("ghc-contravariant" ,ghc-contravariant)
        ("ghc-distributive" ,ghc-distributive)
+       ("ghc-hashable" ,ghc-hashable)
        ("ghc-semigroups" ,ghc-semigroups)
-       ("ghc-tagged" ,ghc-tagged)))
+       ("ghc-tagged" ,ghc-tagged)
+       ("ghc-unordered-containers" ,ghc-unordered-containers)))
+    (native-inputs
+     `(("cabal-doctest" ,cabal-doctest)
+       ("ghc-doctest" ,ghc-doctest)))
     (home-page "https://github.com/ekmett/semigroupoids")
     (synopsis "Semigroupoids operations for Haskell")
     (description "This library provides a wide array of (semi)groupoids and
@@ -4859,7 +5265,7 @@ just a @code{Semigroup} are added.")
 (define-public ghc-contravariant
   (package
     (name "ghc-contravariant")
-    (version "1.4")
+    (version "1.4.1")
     (source
      (origin
        (method url-fetch)
@@ -4869,7 +5275,7 @@ just a @code{Semigroup} are added.")
              ".tar.gz"))
        (sha256
         (base32
-         "117fff8kkrvlmr8cb2jpj71z7lf2pdiyks6ilyx89mry6zqnsrp1"))))
+         "1vfhk8c5cxmmakx7rflap1ipkx5q0j5vnlrcz7yz6y53kxhksgf9"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-void" ,ghc-void)
@@ -4885,7 +5291,7 @@ just a @code{Semigroup} are added.")
 (define-public ghc-semigroups
   (package
     (name "ghc-semigroups")
-    (version "0.18.2")
+    (version "0.18.5")
     (source
      (origin
        (method url-fetch)
@@ -4895,7 +5301,7 @@ just a @code{Semigroup} are added.")
              ".tar.gz"))
        (sha256
         (base32
-         "1r6hsn3am3dpf4rprrj4m04d9318v9iq02bin0pl29dg4a3gzjax"))))
+         "17g29h62g1k51ghhvzkw72zksjgi6vs6bfipkj81pqw1dsprcamb"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-nats" ,ghc-nats)
@@ -4914,10 +5320,22 @@ where every element did not have to have an inverse, thus the name
 semigroup.")
     (license license:bsd-3)))
 
+(define-public ghc-semigroups-bootstrap
+  (package
+    (inherit ghc-semigroups)
+    (name "ghc-semigroups-bootstrap")
+    (inputs
+     `(("ghc-nats" ,ghc-nats-bootstrap)
+       ("ghc-tagged" ,ghc-tagged)
+       ("ghc-unordered-containers" ,ghc-unordered-containers-bootstrap)
+       ("ghc-text" ,ghc-text)
+       ("ghc-hashable" ,ghc-hashable-bootstrap)))
+    (properties '(hidden? #t))))
+
 (define-public ghc-free
   (package
     (name "ghc-free")
-    (version "4.12.4")
+    (version "5.0.2")
     (source
      (origin
        (method url-fetch)
@@ -4927,7 +5345,7 @@ semigroup.")
              ".tar.gz"))
        (sha256
         (base32
-         "1147s393442xf4gkpbq0rd1p286vmykgx85mxhk5d1c7wfm4bzn9"))))
+         "15m3n9vhz7z3kzv1w3wlfa3x8jp4cbrkwmrcjr7jlx39iqffn1gg"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-prelude-extras" ,ghc-prelude-extras)
@@ -4936,9 +5354,10 @@ semigroup.")
        ("ghc-bifunctors" ,ghc-bifunctors)
        ("ghc-comonad" ,ghc-comonad)
        ("ghc-distributive" ,ghc-distributive)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-semigroupoids" ,ghc-semigroupoids)
-       ("ghc-semigroups" ,ghc-semigroups)))
+       ("ghc-semigroups" ,ghc-semigroups)
+       ("ghc-transformers-base" ,ghc-transformers-base)
+       ("ghc-transformers-compat" ,ghc-transformers-compat)))
     (home-page "https://github.com/ekmett/free/")
     (synopsis "Unrestricted monads for Haskell")
     (description "This library provides free monads, which are useful for many
@@ -4953,7 +5372,7 @@ definition of @code{Monad}.")
 (define-public ghc-adjunctions
   (package
     (name "ghc-adjunctions")
-    (version "4.3")
+    (version "4.4")
     (source
      (origin
        (method url-fetch)
@@ -4963,7 +5382,7 @@ definition of @code{Monad}.")
              ".tar.gz"))
        (sha256
         (base32
-         "1k1ykisf96i4g2zm47c45md7p42c4vsp9r73392pz1g8mx7s2j5r"))))
+         "1sbal7cbhm12crfnfhkk322jnzgx7lhw3jzq0p463bipagsjwz2h"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-profunctors" ,ghc-profunctors)
@@ -4971,11 +5390,15 @@ definition of @code{Monad}.")
        ("ghc-contravariant" ,ghc-contravariant)
        ("ghc-distributive" ,ghc-distributive)
        ("ghc-free" ,ghc-free)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-tagged" ,ghc-tagged)
        ("ghc-semigroupoids" ,ghc-semigroupoids)
        ("ghc-semigroups" ,ghc-semigroups)
+       ("ghc-transformers-compat" ,ghc-transformers-compat)
        ("ghc-void" ,ghc-void)))
+    (native-inputs
+     `(("ghc-generic-deriving" ,ghc-generic-deriving)
+       ("ghc-hspec" ,ghc-hspec)
+       ("hspec-discover" ,hspec-discover)))
     (home-page "https://github.com/ekmett/adjunctions/")
     (synopsis "Adjunctions and representable functors")
     (description "This library provides adjunctions and representable functors
@@ -4995,8 +5418,7 @@ for Haskell.")
         (base32 "0a85bdyyvjqs5z4kfhhf758210k9gi9dv42ik66a3jl0z7aix8kx"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-stmonadtrans" ,ghc-stmonadtrans)
+     `(("ghc-stmonadtrans" ,ghc-stmonadtrans)
        ("ghc-transformers-compat" ,ghc-transformers-compat)
        ("ghc-quickcheck" ,ghc-quickcheck)
        ("ghc-test-framework" ,ghc-test-framework)
@@ -5042,7 +5464,7 @@ monad transformer (instead of the IO monad).")
 (define-public ghc-doctest
   (package
     (name "ghc-doctest")
-    (version "0.11.0")
+    (version "0.16.0")
     (source
      (origin
        (method url-fetch)
@@ -5052,13 +5474,14 @@ monad transformer (instead of the IO monad).")
              ".tar.gz"))
        (sha256
         (base32
-         "0xv4vx1r3mk7cmiwywzrq25545cx3i7imhcx33mk47r88j5c49fj"))))
+         "0hkccch65s3kp0b36h7bqhilnpi4bx8kngncm7ma9vbd3dwacjdv"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f))          ; FIXME: missing test framework
     (inputs
      `(("ghc-syb" ,ghc-syb)
        ("ghc-paths" ,ghc-paths)
        ("ghc-base-compat" ,ghc-base-compat)
+       ("ghc-code-page" ,ghc-code-page)
        ("ghc-hunit" ,ghc-hunit)
        ("ghc-hspec" ,ghc-hspec)
        ("ghc-quickcheck" ,ghc-quickcheck)
@@ -5073,41 +5496,10 @@ It is modeled after doctest for Python, see
 @uref{https://docs.python.org/library/doctest.html, the Doctest website}.")
     (license license:expat)))
 
-(define-public ghc-doctest-0.12
-  (package (inherit ghc-doctest)
-    (name "ghc-doctest")
-    (version "0.12.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "https://hackage.haskell.org/package/doctest/doctest-"
-             version
-             ".tar.gz"))
-       (sha256
-        (base32
-         "13h549cpgcvb7c54c7wif28g5wak84dxc3ais0hlqhzk1q6la91a"))))
-    (inputs
-     `(("ghc-code-page" ,ghc-code-page)
-       ,@(package-inputs ghc-doctest)))))
-
-(define-public ghc-doctest-0.13
-  (package (inherit ghc-doctest-0.12)
-    (name "ghc-doctest")
-    (version "0.13.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://hackage.haskell.org/package/"
-                           "doctest/doctest-" version ".tar.gz"))
-       (sha256
-        (base32
-         "08g3nmpqbnbkxc95d65hkhfabwax10qrq51vlynr342npn40mn2b"))))))
-
 (define-public ghc-lifted-base
   (package
     (name "ghc-lifted-base")
-    (version "0.2.3.8")
+    (version "0.2.3.12")
     (source
      (origin
        (method url-fetch)
@@ -5117,7 +5509,7 @@ It is modeled after doctest for Python, see
              ".tar.gz"))
        (sha256
         (base32
-         "17yz4n7q96x4cp8vxai8csn2vmpigxvipkfh48arahf91f0xy18n"))))
+         "1i8p8d3rkdh21bhgjjh32vd7qqjr7jq7p59qds0aw2kmargsjd61"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f)) ; FIXME: Missing testing libraries.
     (inputs
@@ -5195,7 +5587,13 @@ occurrences of a substring (the first in case of overlaps) with another.")
          "1wj8kgjg5bn2yrs4zh9qfjv85cx6w998j9pi39yrbv305944mb9j"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=tasty")))
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "integer-logarithms.cabal"
+               (("tasty >= 0\\.10 && < 1\\.1")
+                "tasty >= 0.10 && < 1.2")))))))
     (native-inputs
      `(("ghc-quickcheck" ,ghc-quickcheck)
        ("ghc-smallcheck" ,ghc-smallcheck)
@@ -5214,6 +5612,14 @@ occurrences of a substring (the first in case of overlaps) with another.")
 in migrated modules.")
     (license license:expat)))
 
+(define-public ghc-integer-logarithms-bootstrap
+  (package
+    (inherit ghc-integer-logarithms)
+    (name "ghc-integer-logarithms-bootstrap")
+    (arguments `(#:tests? #f))
+    (native-inputs '())
+    (properties '(hidden? #t))))
+
 (define-public ghc-scientific
   (package
     (name "ghc-scientific")
@@ -5251,17 +5657,30 @@ and space efficient.  They are represented using
 notation}.")
     (license license:bsd-3)))
 
+(define-public ghc-scientific-bootstrap
+  (package
+    (inherit ghc-scientific)
+    (name "ghc-scientific-bootstrap")
+    (arguments `(#:tests? #f))
+    (inputs
+     `(("ghc-integer-logarithms" ,ghc-integer-logarithms-bootstrap)
+       ("ghc-text" ,ghc-text)
+       ("ghc-hashable" ,ghc-hashable)
+       ("ghc-primitive" ,ghc-primitive)))
+    (native-inputs '())
+    (properties '(hidden? #t))))
+
 (define-public ghc-boxes
   (package
     (name "ghc-boxes")
-    (version "0.1.4")
+    (version "0.1.5")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://hackage.haskell.org/package/boxes/boxes-"
                            version ".tar.gz"))
        (sha256
-        (base32 "1n7xiplzd3s1a39nizwjcgsh3wi2348mp21c3fk19v98ialfjgjf"))))
+        (base32 "1hsnmw95i58d4bkpxby3ddsj1cawypw4mdyb18m393s5i8p7iq9q"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-split" ,ghc-split)
@@ -5286,6 +5705,9 @@ using a simple box model.")
                (base32
                 "17bwghc15mc9pchfd1w46jh2p3wzc86aj6a537wqwxn08rayzcxh"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("2" "1pnidf8w8x0w5fsqgv8hhrw07slmhxwy5x4fikgk0bd6k76aqicb")))
     (native-inputs
      `(("ghc-hunit" ,ghc-hunit)
        ("ghc-test-framework" ,ghc-test-framework)
@@ -5334,8 +5756,6 @@ and bytestrings.")
                (base32
                 "1q6v2bynij724fv347mhqxdscwifzrx5jb9mq80608qf638fn717"))))
     (build-system haskell-build-system)
-    (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck")))
     (inputs
      `(("ghc-syb" ,ghc-syb)
        ("ghc-aeson" ,ghc-aeson)
@@ -5354,25 +5774,6 @@ pandoc to represent structured documents.  It also provides functions for
 building up, manipulating and serialising @code{Pandoc} structures.")
     (license license:bsd-3)))
 
-(define-public ghc-pandoc-types-for-pandoc-1
-  (package (inherit ghc-pandoc-types)
-    (version "1.17.0.5")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "https://hackage.haskell.org/package/"
-                                  "pandoc-types/pandoc-types-"
-                                  version ".tar.gz"))
-              (sha256
-               (base32
-                "1csipjdq00iiq77k2wlrg4i7afrzlh8nl585q785xzw7nn45b0n8"))))
-    (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck"
-                               "--allow-newer=HUnit")))
-    (inputs
-     `(("ghc-syb" ,ghc-syb)
-       ("ghc-aeson" ,ghc-aeson-for-pandoc-1)
-       ("ghc-string-qq" ,ghc-string-qq)))))
-
 (define-public ghc-texmath
   (package
     (name "ghc-texmath")
@@ -5393,7 +5794,6 @@ building up, manipulating and serialising @code{Pandoc} structures.")
        ("ghc-utf8-string" ,ghc-utf8-string)
        ("ghc-xml" ,ghc-xml)
        ("ghc-parsec" ,ghc-parsec)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-pandoc-types" ,ghc-pandoc-types)))
     (home-page "https://github.com/jgm/texmath")
     (synopsis "Conversion between formats used to represent mathematics")
@@ -5406,27 +5806,6 @@ markup formats).  The TeX reader supports basic LaTeX and AMS extensions, and
 it can parse and apply LaTeX macros.")
     (license license:gpl2+)))
 
-(define-public ghc-texmath-for-pandoc-1
-  (package (inherit ghc-texmath)
-    (version "0.9.4.4")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "https://hackage.haskell.org/package/"
-                                  "texmath/texmath-" version ".tar.gz"))
-              (sha256
-               (base32
-                "129q33m56diiv35kdwfb07838wrg0mm88kxdqxfyl1zvf9nzkqkd"))))
-    (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-network-uri" ,ghc-network-uri)
-       ("ghc-pandoc-types" ,ghc-pandoc-types-for-pandoc-1)
-       ("ghc-parsec" ,ghc-parsec)
-       ("ghc-split" ,ghc-split)
-       ("ghc-syb" ,ghc-syb)
-       ("ghc-temporary" ,ghc-temporary)
-       ("ghc-utf8-string" ,ghc-utf8-string)
-       ("ghc-xml" ,ghc-xml)))))
-
 (define-public ghc-regex-pcre-builtin
   (package
     (name "ghc-regex-pcre-builtin")
@@ -5476,7 +5855,7 @@ and utilities for pretty printing.")
 (define-public ghc-highlighting-kate
   (package
     (name "ghc-highlighting-kate")
-    (version "0.6.3")
+    (version "0.6.4")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -5484,7 +5863,7 @@ and utilities for pretty printing.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "03c4flh4h1jd48bx0qmplax3q8w6wj1dhbh6j0xhaf5h95fbinki"))))
+                "1bqv00gfmrsf0jjr4qf3lhshvfkyzmhbi3pjb6mafbnsyn2k7f6q"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-diff" ,ghc-diff)
@@ -5492,8 +5871,7 @@ and utilities for pretty printing.")
     (native-inputs
      `(("ghc-parsec" ,ghc-parsec)
        ("ghc-blaze-html" ,ghc-blaze-html)
-       ("ghc-utf8-string" ,ghc-utf8-string)
-       ("ghc-mtl" ,ghc-mtl)))
+       ("ghc-utf8-string" ,ghc-utf8-string)))
     (home-page "https://github.com/jgm/highlighting-kate")
     (synopsis "Syntax highlighting library")
     (description
@@ -5535,7 +5913,7 @@ sources, and does not require prior installation of the C library.")
 (define-public ghc-cmark-gfm
   (package
     (name "ghc-cmark-gfm")
-    (version "0.1.3")
+    (version "0.1.5")
     (source
      (origin
        (method url-fetch)
@@ -5544,7 +5922,7 @@ sources, and does not require prior installation of the C library.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "1fkisbrydmdx5h8yad09fzk8h1b1j53r02g7vb81izgdwj9b673k"))))
+         "13b0mqks5c1q989slgsa3ixr5vvkfyic4ynzgv00kgl5qrs7hqk7"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-text" ,ghc-text)))
@@ -5646,7 +6024,7 @@ asynchronous exceptions.")
 (define-public ghc-th-abstraction
   (package
     (name "ghc-th-abstraction")
-    (version "0.2.6.0")
+    (version "0.2.8.0")
     (source
      (origin
        (method url-fetch)
@@ -5655,7 +6033,7 @@ asynchronous exceptions.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "0g42h6wnj2awc5ryhbvx009wd8w75pn66bjzsq1z4s3xajd2hbp5"))))
+         "0n17w4q2ykd0nica4sck2wng6md56rfad8x0icl0l8vnzb9nn4ya"))))
     (build-system haskell-build-system)
     (home-page "https://github.com/glguy/th-abstraction")
     (synopsis "Nicer interface for reified information about data types")
@@ -5669,15 +6047,17 @@ Template Haskell.")
 (define-public ghc-th-lift
   (package
     (name "ghc-th-lift")
-    (version "0.7.8")
+    (version "0.7.11")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
                                   "th-lift/th-lift-" version ".tar.gz"))
               (sha256
                (base32
-                "0ay10b78x3969rpqqrgzy8srkl6iby2cljbf3mm17na8x22k7y1c"))))
+                "131360zxb0hazbqwbkk6ab2p77jkxr79bwwm618mrwrwkm3x2g6m"))))
     (build-system haskell-build-system)
+    (inputs
+     `(("ghc-th-abstraction" ,ghc-th-abstraction)))
     (home-page "https://github.com/mboes/th-lift")
     (synopsis "Derive Template Haskell's Lift class for datatypes")
     (description
@@ -5714,7 +6094,7 @@ instances.  This package provides orphan instances for @code{containers},
 (define-public ghc-th-expand-syns
   (package
     (name "ghc-th-expand-syns")
-    (version "0.4.0.0")
+    (version "0.4.4.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -5722,7 +6102,7 @@ instances.  This package provides orphan instances for @code{containers},
                                   version ".tar.gz"))
               (sha256
                (base32
-                "1sjy7a17zwyvlbkc8gklii67sy78wpnw35fyb00lsbnpk4cryd2r"))))
+                "01prlvh3py5hq5ccjidfyp9ixq2zd88dkbsidyjrpkja6v8m43yc"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-syb" ,ghc-syb)))
@@ -5736,7 +6116,7 @@ instances.  This package provides orphan instances for @code{containers},
 (define-public ghc-th-reify-many
   (package
     (name "ghc-th-reify-many")
-    (version "0.1.6")
+    (version "0.1.8")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -5744,11 +6124,10 @@ instances.  This package provides orphan instances for @code{containers},
                                   version ".tar.gz"))
               (sha256
                (base32
-                "1b76zjxkj0v0n8zj9l0nwav2irm0c43rx6qjihfw8klmmxvx59df"))))
+                "0hzy6hvhvcd6i60vx5cp2b7ggmnnjh9rx4h8bm8xw4grglcaxjnf"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-safe" ,ghc-safe)
+     `(("ghc-safe" ,ghc-safe)
        ("ghc-th-expand-syns" ,ghc-th-expand-syns)))
     (home-page "https://github.com/mgsloan/th-reify-many")
     (synopsis "Recurseively reify template haskell datatype info")
@@ -5762,20 +6141,19 @@ function which generates instances.")
 (define-public ghc-th-orphans
   (package
     (name "ghc-th-orphans")
-    (version "0.13.2")
+    (version "0.13.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
                                   "th-orphans/th-orphans-" version ".tar.gz"))
               (sha256
                (base32
-                "0102vkyzpgnp2fys8pvw4khrhrh2y1b8dp1slgvn020vg4s351mc"))))
+                "0sfl3pn9kq9da3ji3lsgzgzy82vz6yvsg80dmakc1jvk7awycibp"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-th-lift" ,ghc-th-lift)
        ("ghc-th-lift-instances" ,ghc-th-lift-instances)
        ("ghc-th-reify-many" ,ghc-th-reify-many)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-generic-deriving" ,ghc-generic-deriving)))
     (native-inputs
      `(("ghc-hspec" ,ghc-hspec)))
@@ -5791,7 +6169,7 @@ package, and that's where the version number started.")
 (define-public ghc-geniplate-mirror
   (package
     (name "ghc-geniplate-mirror")
-    (version "0.7.5")
+    (version "0.7.6")
     (source
      (origin
        (method url-fetch)
@@ -5799,9 +6177,8 @@ package, and that's where the version number started.")
                            "/geniplate-mirror"
                            "/geniplate-mirror-" version ".tar.gz"))
        (sha256
-        (base32 "17vjps2118s5z3k39ij00lkmkxv3mqf8h59wv6qdamlgmhyr36si"))))
+        (base32 "1y0m0bw5zpm1y1y6d9qmxj3swl8j8hlw1shxbr5awycf6k884ssb"))))
     (build-system haskell-build-system)
-    (inputs `(("ghc-mtl" ,ghc-mtl)))
     (home-page "https://github.com/danr/geniplate")
     (synopsis "Use Template Haskell to generate Uniplate-like functions")
     (description
@@ -5835,7 +6212,7 @@ info for more informative bug reports.")
 (define-public ghc-haskell-src-meta
   (package
     (name "ghc-haskell-src-meta")
-    (version "0.8.0.2")
+    (version "0.8.0.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -5843,7 +6220,7 @@ info for more informative bug reports.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "12rc4v5dbbbcwdp7j8isvnm9vqpazv124j5kdfwlgwgwjhxi8ysb"))))
+                "08jq156zv4m0fjq6712n99c1jwxnpa6kj6sq8ch0r1l0a1ay6ww4"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-haskell-src-exts" ,ghc-haskell-src-exts)
@@ -5877,7 +6254,6 @@ template-haskell abstract syntax.")
        ("ghc-lifted-base" ,ghc-lifted-base)
        ("ghc-mono-traversable" ,ghc-mono-traversable)
        ("ghc-mmorph" ,ghc-mmorph)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-resourcet" ,ghc-resourcet)
        ("ghc-silently" ,ghc-silently)
        ("ghc-transformers-base" ,ghc-transformers-base)
@@ -5903,7 +6279,7 @@ space as enumerator/iteratee and pipes.")
 (define-public ghc-logging-facade
   (package
     (name "ghc-logging-facade")
-    (version "0.1.1")
+    (version "0.3.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -5911,7 +6287,7 @@ space as enumerator/iteratee and pipes.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "18ldv6rsff480rqpbs3iabjpvn1fhw0i2a0g80jnhxg9ajfz5yb0"))))
+                "0d0lwxxgd16is9aw6v3ps4r9prv3dj8xscmm45fvzq3nicjiawcf"))))
     (build-system haskell-build-system)
     (native-inputs
      `(("ghc-hspec" ,ghc-hspec)
@@ -5926,14 +6302,14 @@ back-ends.")
 (define-public ghc-mockery
   (package
     (name "ghc-mockery")
-    (version "0.3.3")
+    (version "0.3.5")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
                                   "mockery/mockery-" version ".tar.gz"))
               (sha256
                (base32
-                "1m7sq2vclgir3qbpngzl3g87ks4034blwwf7p3h02c0jlcwpl5b1"))))
+                "09ypgm3z69gq8mj6y66ss58kbjnk15r8frwcwbqcfbfksfnfv8dp"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-temporary" ,ghc-temporary)
@@ -5951,14 +6327,14 @@ back-ends.")
 (define-public ghc-yaml
   (package
     (name "ghc-yaml")
-    (version "0.8.28")
+    (version "0.8.32")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
                                   "yaml/yaml-" version ".tar.gz"))
               (sha256
                (base32
-                "0swgkzkfrwj0ac7lssn8rnrdfmh3lcsdn5fbq2iwv55di6jbc0pp"))))
+                "0cbsyh4ilvjzq1q7pxls43k6pdqxg1l85xzibcwpbvmlvrizh86w"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-conduit" ,ghc-conduit)
@@ -5984,12 +6360,6 @@ back-ends.")
      "This package provides a library to parse and render YAML documents.")
     (license license:bsd-3)))
 
-(define-public ghc-yaml-for-pandoc-1
-  (package (inherit ghc-yaml)
-    (inputs
-     `(("ghc-aeson" ,ghc-aeson-for-pandoc-1)
-       ,@(alist-delete "ghc-aeson" (package-inputs ghc-yaml))))))
-
 (define-public ghc-filemanip
   (package
     (name "ghc-filemanip")
@@ -6003,8 +6373,7 @@ back-ends.")
                 "0ilqr8jv41zxcj5qyicg29m8s30b9v70x6f9h2h2rw5ap8bxldl8"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-unix-compat" ,ghc-unix-compat)))
+     `(("ghc-unix-compat" ,ghc-unix-compat)))
     (home-page "https://github.com/bos/filemanip")
     (synopsis "File and directory manipulation for Haskell")
     (description
@@ -6037,7 +6406,7 @@ do on-demand loading.")
 (define-public ghc-juicypixels
   (package
     (name "ghc-juicypixels")
-    (version "3.2.9.3")
+    (version "3.2.9.5")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -6045,11 +6414,10 @@ do on-demand loading.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "14s57fgf6kd5n5al2kcvk1aaxbq1ph0r5h8blflrjkx83yl6r8yn"))))
+                "0mf3ihr0xy2wc2wzb9a17g0n3p60x7pvm8akwpvhdy8klvs6r744"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-zlib" ,ghc-zlib)
+     `(("ghc-zlib" ,ghc-zlib)
        ("ghc-vector" ,ghc-vector)
        ("ghc-primitive" ,ghc-primitive)
        ("ghc-mmap" ,ghc-mmap)))
@@ -6063,14 +6431,14 @@ TIFF and GIF formats.")
 (define-public ghc-hslua
   (package
     (name "ghc-hslua")
-    (version "0.9.5")
+    (version "0.9.5.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
                                   "hslua/hslua-" version ".tar.gz"))
               (sha256
                (base32
-                "1j2zk7f7nyywg2b0n6kb2yf6ljc7cn2sk9jz0h76g3ag2b70l12n"))))
+                "1rdvv01p214zfjh6fcqjjgqwi8y42wad6cqzhlcv5gvclzw2ck8f"))))
     (build-system haskell-build-system)
     (arguments
      `(#:configure-flags '("-fsystem-lua")))
@@ -6078,7 +6446,6 @@ TIFF and GIF formats.")
      `(("lua" ,lua)
        ("ghc-exceptions" ,ghc-exceptions)
        ("ghc-fail" ,ghc-fail)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-text" ,ghc-text)))
     (native-inputs
      `(("ghc-tasty" ,ghc-tasty)
@@ -6094,27 +6461,6 @@ TIFF and GIF formats.")
 described in @url{https://www.lua.org/}.")
     (license license:expat)))
 
-(define-public ghc-hslua-for-pandoc-1
-  (package (inherit ghc-hslua)
-    (version "0.4.1")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "https://hackage.haskell.org/package/"
-                                  "hslua/hslua-" version ".tar.gz"))
-              (sha256
-               (base32
-                "0gqp6qhp4v24kzv2j49kgk7bxqzw0w10x0zr0r2j9wkfavqb9wid"))))
-    (inputs
-     `(("lua" ,lua-5.1)
-       ("ghc-text" ,ghc-text)))
-    (native-inputs
-     `(("ghc-quickcheck" ,ghc-quickcheck)
-       ("ghc-quickcheck-instances" ,ghc-quickcheck-instances)
-       ("ghc-hspec" ,ghc-hspec)
-       ("ghc-hspec-contrib" ,ghc-hspec-contrib)
-       ("ghc-hunit" ,ghc-hunit)
-       ("hspec-discover" ,hspec-discover)))))
-
 (define-public ghc-hslua-module-text
   (package
     (name "ghc-hslua-module-text")
@@ -6129,6 +6475,9 @@ described in @url{https://www.lua.org/}.")
         (base32
          "0bcfpb1dhnxp0gr376ai4w7vczr9zrjl1r3r6w7kcxivfkwq9cxf"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("1" "0vajlsd7y6pwa08635q0cx8z5c1c55bk7fvavw7g2vmyvxqjzx6n")))
     (inputs
      `(("ghc-hslua" ,ghc-hslua)
        ("ghc-text" ,ghc-text)))
@@ -6166,18 +6515,17 @@ wrapping a bytestring with stronger and more meaniful name.")
 (define-public ghc-hourglass
   (package
     (name "ghc-hourglass")
-    (version "0.2.10")
+    (version "0.2.12")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
                                   "hourglass/hourglass-" version ".tar.gz"))
               (sha256
                (base32
-                "104d1yd84hclprg740nkz60vx589mnm094zriw6zczbgg8nkclym"))))
+                "0jnay5j13vpz6i1rkaj3j0d9v8jfpri499xn3l7wd01f81f5ncs4"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-old-locale" ,ghc-old-locale)))
+     `(("ghc-old-locale" ,ghc-old-locale)))
     (native-inputs
      `(("ghc-tasty" ,ghc-tasty)
        ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)
@@ -6205,7 +6553,13 @@ representations of current time.")
         (base32 "0jkca97zyv23yyilp3jydcrzxqhyk27swhzh82llvban5zp8b21y"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck")))
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "edit-distance.cabal"
+               (("QuickCheck >= 2\\.4 && <2\\.9")
+                "QuickCheck >= 2.4 && < 2.12")))))))
     (inputs
      `(("ghc-random" ,ghc-random)
        ("ghc-test-framework" ,ghc-test-framework)
@@ -6251,14 +6605,14 @@ set, memory copy, ..) and more")
 (define-public ghc-socks
   (package
     (name "ghc-socks")
-    (version "0.5.5")
+    (version "0.5.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
                                   "socks/socks-" version ".tar.gz"))
               (sha256
                (base32
-                "0s689w1hh9g8ifl75xhzbv96ir07hwn04b4lgvbxzl8swa9ylir6"))))
+                "0f44qy74i0n6ll3jym0a2ipafkpw1h67amcpqmj8iq95h21wsqzs"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-cereal" ,ghc-cereal)
@@ -6272,7 +6626,7 @@ set, memory copy, ..) and more")
 (define-public ghc-connection
   (package
     (name "ghc-connection")
-    (version "0.2.6")
+    (version "0.2.8")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
@@ -6280,7 +6634,7 @@ set, memory copy, ..) and more")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "1c1prsgad669cmf6qrqlb5hmh0dnam2imijqzpwcr4ja14l6rh83"))))
+                "1swkb9w5vx9ph7x55y51dc0srj2z27nd9ibgn8c0qcl6hx7g9cbh"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-byteable" ,ghc-byteable)
@@ -6300,17 +6654,18 @@ needs.  It provides a very simple API to create sockets to a destination with
 the choice of SSL/TLS, and SOCKS.")
     (license license:bsd-3)))
 
-(define-public ghc-skylighting
+(define-public ghc-skylighting-core
   (package
-    (name "ghc-skylighting")
-    (version "0.5.1")
+    (name "ghc-skylighting-core")
+    (version "0.7.2")
     (source (origin
               (method url-fetch)
-              (uri (string-append "https://hackage.haskell.org/package/skylighting-"
-                                  version "/skylighting-" version ".tar.gz"))
+              (uri (string-append "https://hackage.haskell.org/package/"
+                                  "skylighting-core/skylighting-core-"
+                                  version ".tar.gz"))
               (sha256
                (base32
-                "0l5lhhqqlfaq1fs7pn3n3b25kmazk8p4ahwvhagbrhcbm5hsigdg"))))
+                "066fwmwsd7xcvwlinfk2izlzq0xp8697i6lnbgsbl71jdybyackq"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-aeson" ,ghc-aeson)
@@ -6320,22 +6675,21 @@ the choice of SSL/TLS, and SOCKS.")
        ("ghc-blaze-html" ,ghc-blaze-html)
        ("ghc-case-insensitive" ,ghc-case-insensitive)
        ("ghc-colour" ,ghc-colour)
-       ("ghc-diff" ,ghc-diff)
        ("ghc-hxt" ,ghc-hxt)
-       ("ghc-mtl" ,ghc-mtl)
-       ("ghc-pretty-show" ,ghc-pretty-show)
        ("ghc-regex-pcre-builtin" ,ghc-regex-pcre-builtin)
        ("ghc-safe" ,ghc-safe)
        ("ghc-text" ,ghc-text)
        ("ghc-utf8-string" ,ghc-utf8-string)))
     (native-inputs
-     `(("ghc-hunit" ,ghc-hunit)
+     `(("ghc-diff" ,ghc-diff)
+       ("ghc-hunit" ,ghc-hunit)
+       ("ghc-pretty-show" ,ghc-pretty-show)
        ("ghc-quickcheck" ,ghc-quickcheck)
        ("ghc-tasty" ,ghc-tasty)
        ("ghc-tasty-golden" ,ghc-tasty-golden)
        ("ghc-tasty-hunit" ,ghc-tasty-hunit)
        ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)))
-    (home-page "https://hackage.haskell.org/package/skylighting")
+    (home-page "https://github.com/jgm/skylighting")
     (synopsis "Syntax highlighting library")
     (description "Skylighting is a syntax highlighting library with support
 for over one hundred languages.  It derives its tokenizers from XML syntax
@@ -6344,61 +6698,26 @@ supported by that framework can be added.  An optional command-line program is
 provided.  Skylighting is intended to be the successor to highlighting-kate.")
     (license license:gpl2)))
 
-(define-public ghc-skylighting-for-pandoc-1
-  (package (inherit ghc-skylighting)
-    (version "0.1.1.5")
+(define-public ghc-skylighting
+  (package
+    (inherit ghc-skylighting-core)
+    (name "ghc-skylighting")
+    (version "0.7.2")
     (source (origin
-              (method git-fetch)
-              ;; We take the sources from Github, because the tarball on
-              ;; hackage does not include the XML files.
-              (uri (git-reference
-                    (url "https://github.com/jgm/skylighting.git")
-                    (commit version)))
-              (file-name (string-append "ghc-skylighting-" version "-checkout"))
+              (method url-fetch)
+              (uri (string-append "https://hackage.haskell.org/package/skylighting-"
+                                  version "/skylighting-" version ".tar.gz"))
               (sha256
                (base32
-                "0z3yv8v2fqqgv6lsf0ff3ld0h2vkg97b2jiry9wn2f1rizwdqmzl"))))
-    (arguments
-     `(#:configure-flags '("-fbootstrap")
-       #:phases
-       (modify-phases %standard-phases
-         ;; After building the skylighting-extract tool we use it to generate
-         ;; syntax source files from the included XML files.  These are then
-         ;; added to the skylighting.cabal file.
-         (add-after 'build 'extract-xml
-           (lambda _
-             (make-file-writable "skylighting.cabal")
-             (apply invoke "./dist/build/skylighting-extract/skylighting-extract"
-                    (find-files "xml" "\\.xml$"))
-             #t))
-         ;; Reconfigure without bootstrap flag
-         (add-after 'extract-xml 'configure-again
-           (lambda* (#:key outputs inputs tests? #:allow-other-keys)
-             ((assoc-ref %standard-phases 'configure)
-              #:outputs outputs
-              #:inputs inputs
-              #:tests? tests?
-              #:configure-flags '("-f-bootstrap"))))
-         (add-after 'configure-again 'build-again
-           (assoc-ref %standard-phases 'build)))))
-    (inputs
-     `(("ghc-aeson" ,ghc-aeson-for-pandoc-1)
-       ("ghc-ansi-terminal" ,ghc-ansi-terminal)
-       ("ghc-blaze-html" ,ghc-blaze-html)
-       ("ghc-case-insensitive" ,ghc-case-insensitive)
-       ("ghc-diff" ,ghc-diff)
-       ("ghc-hxt" ,ghc-hxt)
-       ("ghc-mtl" ,ghc-mtl)
-       ("ghc-pretty-show" ,ghc-pretty-show)
-       ("ghc-regex-pcre-builtin" ,ghc-regex-pcre-builtin)
-       ("ghc-safe" ,ghc-safe)
-       ("ghc-text" ,ghc-text)
-       ("ghc-utf8-string" ,ghc-utf8-string)))))
+                "1rh3z1a7a4clvksdw1qlpmhxqkfahwypi70k91whgfamzsqpxdch"))))
+    (inputs
+     `(("ghc-skylighting-core" ,ghc-skylighting-core)
+       ,@(package-inputs ghc-skylighting-core)))))
 
 (define-public ghc-doctemplates
   (package
     (name "ghc-doctemplates")
-    (version "0.2.1")
+    (version "0.2.2.1")
     (source
      (origin
        (method url-fetch)
@@ -6407,7 +6726,7 @@ provided.  Skylighting is intended to be the successor to highlighting-kate.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "1bfs2kl5j5al2w2y4qpbn68p0xsnb65r7h51l356kpkzc326646p"))))
+         "1gyckfg3kgvzhxw14i7iwrw0crygvsp86sy53bbr1yn7bxbgn33b"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-aeson" ,ghc-aeson)
@@ -6426,29 +6745,6 @@ provided.  Skylighting is intended to be the successor to highlighting-kate.")
      "This package provides a simple text templating system used by pandoc.")
     (license license:bsd-3)))
 
-(define-public ghc-doctemplates-for-pandoc-1
-  (package (inherit ghc-doctemplates)
-    (version "0.1.0.2")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://hackage.haskell.org/package/"
-                           "doctemplates/doctemplates-"
-                           version ".tar.gz"))
-       (sha256
-        (base32
-         "0swal6rjya1293mwvl63jch5fx9ghpsil7qs4v7rpansa0izalmp"))))
-    (build-system haskell-build-system)
-    (inputs
-     `(("ghc-aeson" ,ghc-aeson-for-pandoc-1)
-       ("ghc-blaze-markup" ,ghc-blaze-markup)
-       ("ghc-blaze-html" ,ghc-blaze-html)
-       ("ghc-text" ,ghc-text)
-       ("ghc-vector" ,ghc-vector)
-       ("ghc-parsec" ,ghc-parsec)
-       ("ghc-unordered-containers" ,ghc-unordered-containers)
-       ("ghc-scientific" ,ghc-scientific)))))
-
 (define-public ghc-pandoc
   (package
     (name "ghc-pandoc")
@@ -6462,6 +6758,20 @@ provided.  Skylighting is intended to be the successor to highlighting-kate.")
         (base32
          "1dqin92w513l7whg5wdgrngnxsj5mb8gppfvn7kjgyv2pdgpy0zy"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "pandoc.cabal"
+               (("tasty >= 0\\.11 && < 1\\.1")
+                "tasty >= 0.11 && < 1.1.1"))))
+         (add-before 'configure 'patch-tests
+           (lambda _
+             ;; These tests fail benignly and have been adjusted upstream:
+             ;; <https://github.com/commercialhaskell/stackage/issues/3719>.
+             (substitute* "test/Tests/Old.hs"
+               (("lhsWriterTests \"html\"") "[]")))))))
     (inputs
      `(("ghc-aeson" ,ghc-aeson)
        ("ghc-aeson-pretty" ,ghc-aeson-pretty)
@@ -6483,7 +6793,6 @@ provided.  Skylighting is intended to be the successor to highlighting-kate.")
        ("ghc-http-client-tls" ,ghc-http-client-tls)
        ("ghc-http-types" ,ghc-http-types)
        ("ghc-juicypixels" ,ghc-juicypixels)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-network" ,ghc-network)
        ("ghc-network-uri" ,ghc-network-uri)
        ("ghc-old-locale" ,ghc-old-locale)
@@ -6525,71 +6834,10 @@ definition lists, tables, and other features.  A compatibility mode is
 provided for those who need a drop-in replacement for Markdown.pl.")
     (license license:gpl2+)))
 
-;; This is the last version of Pandoc 1.x, which is preferred for Rmarkdown.
-(define-public ghc-pandoc-1
-  (package (inherit ghc-pandoc)
-    (version "1.19.2.4")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://hackage.haskell.org/package/pandoc/pandoc-"
-                           version ".tar.gz"))
-       (sha256
-        (base32
-         "0mim429mpakrcnm50csxyqk3ljcx2l26r5grk6w9isnggwgqrq5v"))))
-    (arguments
-     `(#:configure-flags (list "--allow-newer=skylighting")))
-    (inputs
-     `(("ghc-aeson" ,ghc-aeson-for-pandoc-1)
-       ("ghc-ansi-terminal" ,ghc-ansi-terminal)
-       ("ghc-base64-bytestring" ,ghc-base64-bytestring)
-       ("ghc-blaze-html" ,ghc-blaze-html)
-       ("ghc-blaze-markup" ,ghc-blaze-markup)
-       ("ghc-cmark" ,ghc-cmark)
-       ("ghc-data-default" ,ghc-data-default)
-       ("ghc-deepseq-generics" ,ghc-deepseq-generics)
-       ("ghc-diff" ,ghc-diff)
-       ("ghc-doctemplates" ,ghc-doctemplates-for-pandoc-1)
-       ("ghc-executable-path" ,ghc-executable-path)
-       ("ghc-extensible-exceptions" ,ghc-extensible-exceptions)
-       ("ghc-filemanip" ,ghc-filemanip)
-       ("ghc-haddock-library" ,ghc-haddock-library)
-       ("ghc-hslua" ,ghc-hslua-for-pandoc-1)
-       ("ghc-http" ,ghc-http)
-       ("ghc-http-client" ,ghc-http-client)
-       ("ghc-http-client-tls" ,ghc-http-client-tls)
-       ("ghc-http-types" ,ghc-http-types)
-       ("ghc-juicypixels" ,ghc-juicypixels)
-       ("ghc-mtl" ,ghc-mtl)
-       ("ghc-network" ,ghc-network)
-       ("ghc-network-uri" ,ghc-network-uri)
-       ("ghc-old-time" ,ghc-old-time)
-       ("ghc-pandoc-types" ,ghc-pandoc-types-for-pandoc-1)
-       ("ghc-parsec" ,ghc-parsec)
-       ("ghc-random" ,ghc-random)
-       ("ghc-scientific" ,ghc-scientific)
-       ("ghc-sha" ,ghc-sha)
-       ("ghc-skylighting" ,ghc-skylighting-for-pandoc-1)
-       ("ghc-syb" ,ghc-syb)
-       ("ghc-tagsoup" ,ghc-tagsoup)
-       ("ghc-temporary" ,ghc-temporary)
-       ("ghc-texmath" ,ghc-texmath-for-pandoc-1)
-       ("ghc-text" ,ghc-text)
-       ("ghc-unordered-containers" ,ghc-unordered-containers)
-       ("ghc-vector" ,ghc-vector)
-       ("ghc-xml" ,ghc-xml)
-       ("ghc-yaml" ,ghc-yaml-for-pandoc-1)
-       ("ghc-zip-archive" ,ghc-zip-archive)
-       ("ghc-zlib" ,ghc-zlib)))
-    (native-inputs
-     `(("ghc-test-framework" ,ghc-test-framework)
-       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
-       ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))))
-
 (define-public ghc-hs-bibutils
   (package
     (name "ghc-hs-bibutils")
-    (version "6.2.0.1")
+    (version "6.6.0.0")
     (source
      (origin
        (method url-fetch)
@@ -6598,7 +6846,7 @@ provided for those who need a drop-in replacement for Markdown.pl.")
              version ".tar.gz"))
        (sha256
         (base32
-         "0c56sjgg82kjcg5rrplnyn7vf02ccsj3kkcbgc87zxlv0j880rjb"))))
+         "0n2sz2zl4naspryd49ii858qkjp2lapns5a2gr8zm6vvn5sh1f0l"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-syb" ,ghc-syb)))
     (home-page "https://hackage.haskell.org/package/hs-bibutils")
@@ -6635,7 +6883,7 @@ better for some purposes.")
 (define-public ghc-typed-process
   (package
     (name "ghc-typed-process")
-    (version "0.2.2.0")
+    (version "0.2.3.0")
     (source
      (origin
        (method url-fetch)
@@ -6644,7 +6892,7 @@ better for some purposes.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "0c6gvgvjyncbni9a5bvpbglknd4yclr3d3hfg9bhgahmkj40dva2"))))
+         "0j36vrc9w841m5qbwqra1lwiznx31xfnhin1sm8x2c2739csbpn0"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-async" ,ghc-async)
@@ -6729,7 +6977,7 @@ documents.")
 (define-public ghc-xml-conduit
   (package
     (name "ghc-xml-conduit")
-    (version "1.7.1.2")
+    (version "1.8.0.1")
     (source
      (origin
        (method url-fetch)
@@ -6737,11 +6985,12 @@ documents.")
                            "xml-conduit-" version ".tar.gz"))
        (sha256
         (base32
-         "0n4k0rq9j5cc9kdvj9xbx8gmiqlyk5x6pw8yxzw5wfsw7qkych2s"))))
+         "177gmyigxql1pn3ncz0r8annwv5cbxnihbgrrg1dhm4gmc9jy2wq"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-conduit" ,ghc-conduit)
        ("ghc-conduit-extra" ,ghc-conduit-extra)
+       ("ghc-doctest" ,ghc-doctest)
        ("ghc-resourcet" ,ghc-resourcet)
        ("ghc-text" ,ghc-text)
        ("ghc-xml-types" ,ghc-xml-types)
@@ -6762,7 +7011,7 @@ the @code{conduit} package.")
 (define-public ghc-pandoc-citeproc
   (package
     (name "ghc-pandoc-citeproc")
-    (version "0.12.2.5")
+    (version "0.14.3.1")
     (source
      (origin
        (method url-fetch)
@@ -6771,18 +7020,24 @@ the @code{conduit} package.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "1l58nbflcnlznc93qimkk7ghk2gv8kipf45zf88piqa2zys41yyx"))))
+         "0yj6rckwsc9vig40cm15ry0j3d01xpk04qma9n4byhal6v4b5h22"))))
     (build-system haskell-build-system)
     (arguments
      `(#:phases
        (modify-phases %standard-phases
+         ;; Many YAML tests (44) are failing do to changes in ghc-yaml:
+         ;; <https://github.com/jgm/pandoc-citeproc/issues/342>.
+         (add-before 'configure 'patch-tests
+           (lambda _
+             (substitute* "tests/test-pandoc-citeproc.hs"
+               (("let allTests = citeprocTests \\+\\+ biblio2yamlTests")
+                "let allTests = citeprocTests"))))
          ;; Tests need to be run after installation.
          (delete 'check)
          (add-after 'install 'post-install-check
            (assoc-ref %standard-phases 'check)))))
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-pandoc-types" ,ghc-pandoc-types)
+     `(("ghc-pandoc-types" ,ghc-pandoc-types)
        ("ghc-pandoc" ,ghc-pandoc)
        ("ghc-tagsoup" ,ghc-tagsoup)
        ("ghc-aeson" ,ghc-aeson)
@@ -6814,19 +7069,6 @@ and also has a mode for converting bibliographic databases a YAML format
 suitable for inclusion in pandoc YAML metadata.")
     (license license:bsd-3)))
 
-(define-public ghc-pandoc-citeproc-with-pandoc-1
-  (let ((for-pandoc-1
-         (package-input-rewriting
-          `((,ghc-aeson        . ,ghc-aeson-for-pandoc-1)
-            (,ghc-yaml         . ,ghc-yaml-for-pandoc-1)
-            (,ghc-texmath      . ,ghc-texmath-for-pandoc-1)
-            (,ghc-pandoc-types . ,ghc-pandoc-types-for-pandoc-1)
-            (,ghc-hslua        . ,ghc-hslua-for-pandoc-1)
-            (,ghc-skylighting  . ,ghc-skylighting-for-pandoc-1)
-            (,ghc-doctemplates . ,ghc-doctemplates-for-pandoc-1)
-            (,ghc-pandoc       . ,ghc-pandoc-1)))))
-    (for-pandoc-1 ghc-pandoc-citeproc)))
-
 (define-public ghc-union-find
   (package
     (name "ghc-union-find")
@@ -6922,7 +7164,7 @@ regular expressions.  Parsers can be built using Applicative interface.")
 (define-public ghc-regex-tdfa
   (package
     (name "ghc-regex-tdfa")
-    (version "1.2.2")
+    (version "1.2.3.1")
     (source
      (origin
        (method url-fetch)
@@ -6931,11 +7173,10 @@ regular expressions.  Parsers can be built using Applicative interface.")
              version ".tar.gz"))
        (sha256
         (base32
-         "0f8x8wyr6m21g8dnxvnvalz5bsq37l125l6qhs0fscbvprsxc4nb"))))
+         "0l7ajnh4hpgggf2a1r9dg0hx2fy679vd2kada5y7r02hy3nfxala"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-parsec" ,ghc-parsec)
+     `(("ghc-parsec" ,ghc-parsec)
        ("ghc-regex-base" ,ghc-regex-base)))
     (home-page "https://github.com/ChrisKuklewicz/regex-tdfa")
     (synopsis "POSIX extended regular expressions in Haskell.")
@@ -7013,6 +7254,16 @@ this problem.")
         (base32
          "18f17aja1ivhr3zyg2cccn2m03hdn5jf5410dndkhf12gvgiqs7y"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "bytestring-handle.cabal"
+               (("QuickCheck >= 2\\.1\\.2 && < 2\\.11")
+                "QuickCheck >= 2.1.2 && < 2.12")
+               (("base >= 4\\.2 && < 4\\.11")
+                "base >= 4.2 && < 4.12")))))))
     (inputs
      `(("ghc-hunit" ,ghc-hunit)
        ("ghc-quickcheck" ,ghc-quickcheck)
@@ -7027,7 +7278,7 @@ this problem.")
 (define-public ghc-tar
   (package
     (name "ghc-tar")
-    (version "0.5.0.3")
+    (version "0.5.1.0")
     (source
      (origin
        (method url-fetch)
@@ -7036,7 +7287,7 @@ this problem.")
              version ".tar.gz"))
        (sha256
         (base32
-         "18qq94j9bm91iswnxq2dm5dws5c7wm4k01q2rpf8py35cf3svnfq"))))
+         "0s2brvaxg5fki2jdkccmnpssiy6a3wjh24p6a3dkkdvjcixnk7f8"))))
     (build-system haskell-build-system)
     ;; FIXME: 2/24 tests fail.
     (arguments `(#:tests? #f))
@@ -7069,8 +7320,6 @@ an index.")
        (sha256
         (base32 "1nr26fnmi5fdjc6d00w13kjhmfyvb5b837d0006w4dj0yxndaksp"))))
     (build-system haskell-build-system)
-    (inputs
-     `(("ghc-mtl" ,ghc-mtl)))
     (home-page "https://hackage.haskell.org/package/STMonadTrans")
     (synopsis "Monad transformer version of the ST monad")
     (description
@@ -7151,7 +7400,7 @@ the @code{mtl-tf} package.")
 (define-public ghc-colour
 (package
   (name "ghc-colour")
-  (version "2.3.3")
+  (version "2.3.4")
   (source
    (origin
      (method url-fetch)
@@ -7160,7 +7409,11 @@ the @code{mtl-tf} package.")
            version ".tar.gz"))
      (sha256
       (base32
-       "1qmn1778xzg07jg9nx4k1spdz2llivpblf6wwrps1qpqjhsac5cd"))))
+       "1sy51nz096sv91nxqk6yk7b92b5a40axv9183xakvki2nc09yhqg"))))
+  (arguments
+   ;; The tests for this package have the following dependency cycle:
+   ;; ghc-test-framework -> ghc-ansi-terminal -> ghc-colour.
+   `(#:tests? #f))
   (build-system haskell-build-system)
   (home-page "https://www.haskell.org/haskellwiki/Colour")
   (synopsis "Model for human colour perception")
@@ -7208,8 +7461,15 @@ supported.  A module of colour names (\"Data.Colour.Names\") is provided.")
          "0ln1szgfy8fa78l3issq4fx3aqnnd54w3cb4wssrfi48vd5rkfjm"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck"
-                               "--allow-newer=hspec")))
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "fgl-arbitrary.cabal"
+               (("QuickCheck >= 2\\.3 && < 2\\.10")
+                "QuickCheck >= 2.3 && < 2.12")
+               (("hspec >= 2\\.1 && < 2\\.5")
+                "hspec >= 2.1 && < 2.6")))))))
     (inputs
      `(("ghc-fgl" ,ghc-fgl)
        ("ghc-quickcheck" ,ghc-quickcheck)
@@ -7235,8 +7495,6 @@ for generating graph-like data structures.")
                (base32
                 "0kj7ap0gnliviq2p8lscw1m06capnsa90vpvcys24nqy5nw2wrp7"))))
     (build-system haskell-build-system)
-    (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck")))
     (inputs
      `(("ghc-quickcheck" ,ghc-quickcheck)
        ("ghc-colour" ,ghc-colour)
@@ -7274,7 +7532,7 @@ and edge labels with positional information, etc.
 (define-public ghc-constraints
   (package
     (name "ghc-constraints")
-    (version "0.8")
+    (version "0.10.1")
     (source
      (origin
        (method url-fetch)
@@ -7283,12 +7541,15 @@ and edge labels with positional information, etc.
              version ".tar.gz"))
        (sha256
         (base32
-         "120mmv9rwbahslisc1z8zx9lw7v6hl5fzid4l0hiy5as6ijqgl2c"))))
+         "1xy3vv78jxc17hm0z7qqspxjwv7l2jbcbj670yrl2f053qkfr02q"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-hashable" ,ghc-hashable)
-       ("ghc-mtl" ,ghc-mtl)
+       ("ghc-semigroups" ,ghc-semigroups)
        ("ghc-transformers-compat" ,ghc-transformers-compat)))
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)
+       ("hspec-discover" ,hspec-discover)))
     (home-page "https://github.com/ekmett/constraints/")
     (synopsis "Constraint manipulation")
     (description
@@ -7300,7 +7561,7 @@ a vocabulary for working with them.")
 (define-public ghc-lifted-async
   (package
     (name "ghc-lifted-async")
-    (version "0.9.0")
+    (version "0.10.0.2")
     (source
      (origin
        (method url-fetch)
@@ -7309,7 +7570,7 @@ a vocabulary for working with them.")
              version ".tar.gz"))
        (sha256
         (base32
-         "00fnwfcnc6niq9jbbb9rap9rkdgv5qhcglwanzc5fi8834j94c1r"))))
+         "1073r512c1x2m1v0jar9bwqg656slg7jd1jhsyj6m8awgx1l1mwf"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-async" ,ghc-async)
@@ -7318,8 +7579,8 @@ a vocabulary for working with them.")
        ("ghc-monad-control" ,ghc-monad-control)
        ("ghc-constraints" ,ghc-constraints)
        ("ghc-hunit" ,ghc-hunit)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-tasty" ,ghc-tasty)
+       ("ghc-tasty-expected-failure" ,ghc-tasty-expected-failure)
        ("ghc-tasty-hunit" ,ghc-tasty-hunit)
        ("ghc-tasty-th" ,ghc-tasty-th)))
     (home-page "https://github.com/maoe/lifted-async")
@@ -7336,7 +7597,7 @@ instance of @code{MonadBase} or @code{MonadBaseControl}.")
 (define ghc-system-filepath-bootstrap
   (package
     (name "ghc-system-filepath-bootstrap")
-    (version "0.4.13.4")
+    (version "0.4.14")
     (source
      (origin
        (method url-fetch)
@@ -7345,7 +7606,7 @@ instance of @code{MonadBase} or @code{MonadBaseControl}.")
              version ".tar.gz"))
        (sha256
         (base32
-         "1yy5zsmmimhg6iaw9fmpwrxvxrgi5s6bfyqfihdsnx4bjvn7sp9l"))))
+         "14yras4pz2dh55xpwmazcgxijvi8913pjgzb9iw50mjq1lycwmhn"))))
     (build-system haskell-build-system)
     (arguments
      `(#:tests? #f))
@@ -7407,8 +7668,7 @@ which can't be decoded in the current locale encoding.")
          "023fbvbqs5gdwm30j5517gbdcc7fvz0md70dgwgpypkskj3i926y"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-unix-compat" ,ghc-unix-compat)
+     `(("ghc-unix-compat" ,ghc-unix-compat)
        ("ghc-system-filepath-bootstrap" ,ghc-system-filepath-bootstrap)
        ("ghc-system-fileio-bootstrap" ,ghc-system-fileio-bootstrap)
        ("ghc-monad-control" ,ghc-monad-control)
@@ -7458,7 +7718,7 @@ easily work with command-line options.")
 (define-public ghc-chell
   (package
     (name "ghc-chell")
-    (version "0.4.0.1")
+    (version "0.4.0.2")
     (source
      (origin
        (method url-fetch)
@@ -7467,7 +7727,7 @@ easily work with command-line options.")
              version ".tar.gz"))
        (sha256
         (base32
-         "0lb95abzxl4a87nfqxsxpb3a39pd52cci43hcvj8615hyhqvs2jz"))))
+         "10ingy9qnbmc8cqh4i9pskcw43l0mzk8f3d76b3qz3fig5ary3j9"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-options-bootstrap" ,ghc-options-bootstrap)
@@ -7503,7 +7763,14 @@ testing strategies.")
        ("ghc-random" ,ghc-random)
        ("ghc-quickcheck" ,ghc-quickcheck)))
     (arguments
-     `(#:tests? #f))
+     `(#:tests? #f
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "chell-quickcheck.cabal"
+               (("QuickCheck >= 2\\.3 && < 2\\.11")
+                "QuickCheck >= 2.3 && < 2.12")))))))
     (home-page "https://john-millikin.com/software/chell/")
     (synopsis "QuickCheck support for the Chell testing library")
     (description "More complex tests for @code{chell}.")
@@ -7523,6 +7790,14 @@ testing strategies.")
         (base32
          "1iicsys9igx7m7n4l2b8djardmjy2ah5ibzp7kzs758h460fq53a"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "chell-quickcheck.cabal"
+               (("QuickCheck >= 2\\.3 && < 2\\.11")
+                "QuickCheck >= 2.3 && < 2.12")))))))
     (inputs
      `(("ghc-chell" ,ghc-chell)
        ("ghc-chell-quickcheck-bootstrap" ,ghc-chell-quickcheck-bootstrap)
@@ -7643,7 +7918,7 @@ and Fortran complex data types.")
 (define-public ghc-hmatrix
   (package
     (name "ghc-hmatrix")
-    (version "0.18.1.0")
+    (version "0.19.0.0")
     (source
      (origin
        (method url-fetch)
@@ -7651,12 +7926,13 @@ and Fortran complex data types.")
              "https://hackage.haskell.org/package/hmatrix/hmatrix-"
              version ".tar.gz"))
        (sha256
-        (base32 "07zkwvg872hfk6jyn4s54ws8mvclynazaxf7fsbqi16dmf9dn61c"))))
+        (base32 "10jd69nby29dggghcyjk6ykyr5wrn97nrv1dkpyrp0y5xm12xssj"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-random" ,ghc-random)
        ("ghc-split" ,ghc-split)
        ("ghc-storable-complex" ,ghc-storable-complex)
+       ("ghc-semigroups" ,ghc-semigroups)
        ("ghc-vector" ,ghc-vector)
        ;;("openblas" ,openblas)
        ("lapack" ,lapack)))
@@ -7673,7 +7949,7 @@ numerical computations based on BLAS and LAPACK.")
 (define-public ghc-hmatrix-gsl
   (package
     (name "ghc-hmatrix-gsl")
-    (version "0.18.0.1")
+    (version "0.19.0.1")
     (source
      (origin
        (method url-fetch)
@@ -7681,7 +7957,7 @@ numerical computations based on BLAS and LAPACK.")
              "https://hackage.haskell.org/package/hmatrix-gsl/hmatrix-gsl-"
              version ".tar.gz"))
        (sha256
-        (base32 "0mflm7zg6c6a5vy092pa429rzpyv5drc1589r3x4fbmvcyqc79gx"))))
+        (base32 "0v6dla426x4ywaq59jm89ql1i42n39iw6z0j378xwb676v9kfxhm"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-hmatrix" ,ghc-hmatrix)
@@ -7699,7 +7975,7 @@ using GSL.")
 (define-public ghc-hmatrix-special
   (package
     (name "ghc-hmatrix-special")
-    (version "0.4.0.1")
+    (version "0.19.0.0")
     (source
      (origin
        (method url-fetch)
@@ -7708,7 +7984,7 @@ using GSL.")
          "https://hackage.haskell.org/package/hmatrix-special/hmatrix-special-"
          version ".tar.gz"))
        (sha256
-        (base32 "0kpcqdchi7ikzhqacy4rh4dxz3v37paxyb84wqa66sysb72wkabj"))))
+        (base32 "1mywr61kr852sbff26n9x95kswx9l4ycbv6s68qsbkh02xzqq7qz"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-hmatrix" ,ghc-hmatrix)
@@ -7772,7 +8048,7 @@ Haskell, using gnuplot for rendering.")
 (define-public ghc-hashtables
   (package
     (name "ghc-hashtables")
-    (version "1.2.1.0")
+    (version "1.2.3.1")
     (source
      (origin
        (method url-fetch)
@@ -7780,10 +8056,8 @@ Haskell, using gnuplot for rendering.")
              "https://hackage.haskell.org/package/hashtables/hashtables-"
              version ".tar.gz"))
        (sha256
-        (base32 "1b6w9xznk42732vpd8ili60k12yq190xnajgga0iwbdpyg424lgg"))))
+        (base32 "1giw9caajr07slf09j7zry9b0kvm4yj9q78zy1mawzi6gk3wglcg"))))
     (build-system haskell-build-system)
-    (arguments
-     `(#:configure-flags (list "--allow-newer=vector")))
     (inputs
      `(("ghc-hashable" ,ghc-hashable)
        ("ghc-primitive" ,ghc-primitive)
@@ -7839,14 +8113,14 @@ Accessor to access state in transformers State monad.")
 (define-public ghc-utility-ht
   (package
     (name "ghc-utility-ht")
-    (version "0.0.12")
+    (version "0.0.14")
     (home-page "https://hackage.haskell.org/package/utility-ht")
     (source
      (origin
        (method url-fetch)
        (uri (string-append home-page "/utility-ht-" version ".tar.gz"))
        (sha256
-        (base32 "1vq5bd51rl9l5lgfmaqxgiggddk38hzgngcj7qgrqnalcd1myi54"))))
+        (base32 "1a7bgk7wv7sqbxbiv7kankiimr3wij7zdm7s83zwsf886ghyxhk9"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-quickcheck" ,ghc-quickcheck)))
     (synopsis "Haskell helper functions for Lists, Maybes, Tuples, Functions")
@@ -7857,7 +8131,7 @@ helper functions for Lists, Maybes, Tuples, Functions.")
 (define-public ghc-gnuplot
   (package
     (name "ghc-gnuplot")
-    (version "0.5.4.1")
+    (version "0.5.5.2")
     (source
      (origin
        (method url-fetch)
@@ -7865,13 +8139,14 @@ helper functions for Lists, Maybes, Tuples, Functions.")
              "mirror://hackage/package/gnuplot/gnuplot-"
              version ".tar.gz"))
        (sha256
-        (base32 "1xz8prw9xjk0rsyrkp9bsmxykzrbhpv9qhhkdapy75mdbmgwjm7s"))))
+        (base32 "1mlppnc13ygjzmf6ldydys4wvy35yb3xjwwfgf9rbi7nfcqjr6mn"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-temporary" ,ghc-temporary)
        ("ghc-utility-ht" ,ghc-utility-ht)
        ("ghc-data-accessor-transformers" ,ghc-data-accessor-transformers)
        ("ghc-data-accessor" ,ghc-data-accessor)
+       ("ghc-semigroups" ,ghc-semigroups)
        ("gnuplot" ,gnuplot)))
     (arguments
      `(#:phases
@@ -7891,7 +8166,7 @@ helper functions for Lists, Maybes, Tuples, Functions.")
 (define-public ghc-hinotify
   (package
     (name "ghc-hinotify")
-    (version "0.3.8.1")
+    (version "0.3.10")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -7899,8 +8174,10 @@ helper functions for Lists, Maybes, Tuples, Functions.")
                     "hinotify-" version ".tar.gz"))
               (sha256
                (base32
-                "03c1f4d7x805zdiq2w26kl09xrfjw19saycdkhnixzv2qcr6xm1p"))))
+                "17ax3n68a5c2ddazp86aciliskrh6znd3bnry0wcllmb6dbpsaxg"))))
     (build-system haskell-build-system)
+    (inputs
+     `(("ghc-async" ,ghc-async)))
     (home-page "https://github.com/kolmodin/hinotify.git")
     (synopsis "Haskell binding to inotify")
     (description "This library provides a wrapper to the Linux kernel's inotify
@@ -7911,7 +8188,7 @@ accessed or modified.")
 (define-public ghc-fsnotify
   (package
     (name "ghc-fsnotify")
-    (version "0.2.1")
+    (version "0.3.0.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -7919,7 +8196,7 @@ accessed or modified.")
                     "fsnotify-" version ".tar.gz"))
               (sha256
                (base32
-                "0asl313a52qx2w6dw25g845683xsl840bwjh118nkwi5v1xipkzb"))))
+                "19bdbz9wb9jvln6yg6qm0hz0w84bypvkxf0wjhgrgd52f9gidlny"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-text" ,ghc-text)
@@ -7928,7 +8205,9 @@ accessed or modified.")
        ("ghc-hinotify" ,ghc-hinotify)
        ("ghc-tasty" ,ghc-tasty)
        ("ghc-tasty-hunit" ,ghc-tasty-hunit)
-       ("ghc-temporary-rc" ,ghc-temporary-rc)))
+       ("ghc-random" ,ghc-random)
+       ("ghc-shelly" ,ghc-shelly)
+       ("ghc-temporary" ,ghc-temporary)))
     (home-page "https://github.com/haskell-fswatch/hfsnotify")
     (synopsis "Cross platform library for file change notification.")
     (description "Cross platform library for file creation, modification, and
@@ -7939,7 +8218,7 @@ specific Windows, Mac, and Linux file system event notification.")
 (define-public ghc-ieee754
   (package
     (name "ghc-ieee754")
-    (version "0.7.8")
+    (version "0.8.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -7947,7 +8226,7 @@ specific Windows, Mac, and Linux file system event notification.")
                     "ieee754-" version ".tar.gz"))
               (sha256
                (base32
-                "1zvfnnd5nm5kgr60214cdyks0kqdqyzpwk5sdh0s60yr8b7fyjny"))))
+                "1lcs521g9lzy9d7337vg4w7q7s8500rfqy7rcifcz6pm6yfgyb8f"))))
     (build-system haskell-build-system)
     (home-page "https://github.com/patperry/hs-ieee754")
     (synopsis "Utilities for dealing with IEEE floating point numbers")
@@ -7978,7 +8257,7 @@ dependency.")
 (define-public ghc-language-c
   (package
     (name "ghc-language-c")
-    (version "0.5.0")
+    (version "0.8.1")
     (source
      (origin
        (method url-fetch)
@@ -7986,7 +8265,7 @@ dependency.")
                            "language-c/language-c-" version ".tar.gz"))
        (sha256
         (base32
-         "08i2bl7jmmymn2sldzlbz6ig7lx3wfwhlpadzibs3fx72z08pmc6"))))
+         "0sdkjj0hq8p69fcdm6ljbjkjvrsrb8a6rl5dq6dj6byj32ajrm3d"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-syb" ,ghc-syb)))
     (native-inputs
@@ -8003,7 +8282,7 @@ and a large set of GNU extensions.")
 (define-public ghc-markdown-unlit
   (package
     (name "ghc-markdown-unlit")
-    (version "0.4.0")
+    (version "0.5.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -8011,7 +8290,7 @@ and a large set of GNU extensions.")
                     "markdown-unlit-" version ".tar.gz"))
               (sha256
                (base32
-                "1kj2bffl7ndd8ygwwa3r1mbpwbxbfhyfgnbla8k8g9i6ffp0qrbw"))))
+                "1gy79vr85vcp13rdjh0hz7zv6daqqffww4j0cqn2lpjjh9xhsbg7"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-base-compat" ,ghc-base-compat)
@@ -8061,7 +8340,7 @@ Rust syntax.  It is intended to be useful for two different purposes:
 (define-public ghc-wave
   (package
     (name "ghc-wave")
-    (version "0.1.4")
+    (version "0.1.5")
     (source (origin
       (method url-fetch)
       (uri (string-append
@@ -8070,8 +8349,16 @@ Rust syntax.  It is intended to be useful for two different purposes:
              ".tar.gz"))
       (sha256
         (base32
-          "1g5nmqfk6p25v9ismwz4i66ay91bd1qh39xwj0hm4z6a5mw8frk8"))))
+          "03zycmwrchhqvi37fdvlzz2d1vl4hy0i8xyys1zznw38qfq0h2i5"))))
     (build-system haskell-build-system)
+    (arguments
+     '(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "wave.cabal"
+               (("temporary.* < 1\\.3")
+                "temporary >= 1.1 && < 1.4")))))))
     (inputs
      `(("ghc-cereal" ,ghc-cereal)
        ("ghc-data-default-class"
@@ -8101,8 +8388,7 @@ files in Haskell.")
                 "0as5gvlh6pi2gflakp695qnlizyyp059dqrhvjl4gjxalja6xjnp"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-network" ,ghc-network)
+     `(("ghc-network" ,ghc-network)
        ("ghc-old-locale" ,ghc-old-locale)))
     (native-inputs
      `(("ghc-hunit" ,ghc-hunit)))
@@ -8117,14 +8403,14 @@ handler built in.")
 (define-public ghc-unexceptionalio
   (package
     (name "ghc-unexceptionalio")
-    (version "0.3.0")
+    (version "0.4.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://hackage.haskell.org/package/"
                            "unexceptionalio-" version "/" "unexceptionalio-"
                            version ".tar.gz"))
-       (sha256 (base32 "1f7h7zwky4scdcyjspg4ksfh7x6yra0wjybxq70p7vcwpgk2nzlj"))))
+       (sha256 (base32 "09gynk472l7nn5l2w320n4dwigwp0wh0shfp6dyw6r5h2jdxz18p"))))
     (build-system haskell-build-system)
     (home-page "https://github.com/singpolyma/unexceptionalio")
     (synopsis "IO without any non-error, synchronous exceptions")
@@ -8135,7 +8421,7 @@ handled safely, this is what you're left with.")
 (define-public ghc-json
   (package
     (name "ghc-json")
-    (version "0.9.1")
+    (version "0.9.2")
     (source
      (origin
        (method url-fetch)
@@ -8143,11 +8429,10 @@ handled safely, this is what you're left with.")
                            "json-" version ".tar.gz"))
        (sha256
         (base32
-         "18l5027vc68hnnxrxlnyl59vkkg95a92m1zzms0dqiby2r6pxdcn"))))
+         "13kkfgx58z18jphbg56jn08jn72wi3kvfndlwwx87hqwg7x1dfz6"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-syb" ,ghc-syb)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-text" ,ghc-text)
        ("ghc-parsec" ,ghc-parsec)))
     (home-page "https://hackage.haskell.org/package/json")
@@ -8158,61 +8443,88 @@ JSON (JavaScript Object Notation) is a lightweight data-interchange format.")
     (license license:bsd-3)))
 
 (define-public ghc-esqueleto
-  (package
-    (name "ghc-esqueleto")
-    (version "2.5.3")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "https://hackage.haskell.org/package/"
-                           "esqueleto/esqueleto-" version ".tar.gz"))
-       (sha256
-        (base32
-         "10n49rzqmblky7pwjnysalyy6nacmxfms8dqbsdv6hlyzr8pb69x"))))
-    (build-system haskell-build-system)
-    (inputs
-     `(("ghc-blaze-html" ,ghc-blaze-html)
-       ("ghc-conduit" ,ghc-conduit)
-       ("ghc-monad-logger" ,ghc-monad-logger)
-       ("ghc-persistent" ,ghc-persistent)
-       ("ghc-resourcet" ,ghc-resourcet)
-       ("ghc-tagged" ,ghc-tagged)
-       ("ghc-text" ,ghc-text)
-       ("ghc-unordered-containers" ,ghc-unordered-containers)))
-    (native-inputs
-     `(("ghc-hspec" ,ghc-hspec)
-       ("ghc-hunit" ,ghc-hunit)
-       ("ghc-monad-control" ,ghc-monad-control)
-       ("ghc-persistent-sqlite" ,ghc-persistent-sqlite)
-       ("ghc-persistent-template" ,ghc-persistent-template)
-       ("ghc-quickcheck" ,ghc-quickcheck)))
-    (home-page "https://github.com/bitemyapp/esqueleto")
-    (synopsis "Type-safe embedded domain specific language for SQL queries")
-    (description "This library provides a type-safe embedded domain specific
+  (let ((version "2.5.3")
+        (revision "1")
+        (commit "b81e0d951e510ebffca03c5a58658ad884cc6fbd"))
+    (package
+      (name "ghc-esqueleto")
+      (version (git-version version revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/bitemyapp/esqueleto")
+               (commit commit)))
+         (sha256
+          (base32
+           "0lz1qxms7cfg5p3j37inlych0r2fwhm8xbarcys3df9m7jy9nixa"))))
+      (build-system haskell-build-system)
+      (arguments
+       `(#:haddock? #f  ; Haddock reports an internal error.
+         #:phases
+         (modify-phases %standard-phases
+           ;; This package normally runs tests for the MySQL, PostgreSQL, and
+           ;; SQLite backends.  Since we only have Haskell packages for
+           ;; SQLite, we remove the other two test suites.  FIXME: Add the
+           ;; other backends and run all three test suites.
+           (add-before 'configure 'remove-non-sqlite-test-suites
+             (lambda _
+               (use-modules (ice-9 rdelim))
+               (with-atomic-file-replacement "esqueleto.cabal"
+                 (lambda (in out)
+                   (let loop ((line (read-line in 'concat)) (deleting? #f))
+                     (cond
+                      ((eof-object? line) #t)
+                      ((string-every char-set:whitespace line)
+                       (unless deleting? (display line out))
+                       (loop (read-line in 'concat) #f))
+                      ((member line '("test-suite mysql\n"
+                                      "test-suite postgresql\n"))
+                       (loop (read-line in 'concat) #t))
+                      (else
+                       (unless deleting? (display line out))
+                       (loop (read-line in 'concat) deleting?)))))))))))
+      (inputs
+       `(("ghc-blaze-html" ,ghc-blaze-html)
+         ("ghc-conduit" ,ghc-conduit)
+         ("ghc-monad-logger" ,ghc-monad-logger)
+         ("ghc-persistent" ,ghc-persistent)
+         ("ghc-resourcet" ,ghc-resourcet)
+         ("ghc-tagged" ,ghc-tagged)
+         ("ghc-text" ,ghc-text)
+         ("ghc-unliftio" ,ghc-unliftio)
+         ("ghc-unordered-containers" ,ghc-unordered-containers)))
+      (native-inputs
+       `(("ghc-hspec" ,ghc-hspec)
+         ("ghc-persistent-sqlite" ,ghc-persistent-sqlite)
+         ("ghc-persistent-template" ,ghc-persistent-template)))
+      (home-page "https://github.com/bitemyapp/esqueleto")
+      (synopsis "Type-safe embedded domain specific language for SQL queries")
+      (description "This library provides a type-safe embedded domain specific
 language (EDSL) for SQL queries that works with SQL backends as provided by
 @code{ghc-persistent}.  Its language closely resembles SQL, so you don't have
 to learn new concepts, just new syntax, and it's fairly easy to predict the
 generated SQL and optimize it for your backend.")
-    (license license:bsd-3)))
+      (license license:bsd-3))))
 
 (define-public shellcheck
   (package
     (name "shellcheck")
-    (version "0.4.6")
+    (version "0.5.0")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "https://github.com/koalaman/shellcheck/archive/"
-                           "v" version ".tar.gz"))
+       (uri (string-append
+             "https://hackage.haskell.org/package/ShellCheck/ShellCheck-"
+             version ".tar.gz"))
        (sha256
         (base32
-         "1qkd69lc34n3l23ss9rq1azvx49bfq4hi4bmaj76rgxybscxhg0w"))
+         "0z1hscbr11hwkq8k1v0vaa947hb9m6k4cm831jk1gpj8dxrk151b"))
        (file-name (string-append name "-" version ".tar.gz"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-quickcheck" ,ghc-quickcheck)
-       ("ghc-json" ,ghc-json)
-       ("ghc-mtl" ,ghc-mtl)
+     `(("ghc-aeson" ,ghc-aeson)
+       ("ghc-quickcheck" ,ghc-quickcheck)
        ("ghc-parsec" ,ghc-parsec)
        ("ghc-regex-tdfa" ,ghc-regex-tdfa)))
     (home-page "https://github.com/koalaman/shellcheck")
@@ -8234,7 +8546,7 @@ advanced user's otherwise working script to fail under future circumstances.
 (define-public ghc-simple-sendfile
   (package
     (name "ghc-simple-sendfile")
-    (version "0.2.25")
+    (version "0.2.27")
     (source
      (origin
        (method url-fetch)
@@ -8243,7 +8555,7 @@ advanced user's otherwise working script to fail under future circumstances.
                            "simple-sendfile-" version ".tar.gz"))
        (sha256
         (base32
-         "0k99j9xfcf83c55jmn202hdinhjaa4yn3dal4rvjk2w2rlhqirha"))))
+         "1bwwqzcm56m2w4ymsa054sxmpbj76h9pvb0jf8zxp8lr41cp51gn"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-conduit" ,ghc-conduit)
@@ -8282,7 +8594,7 @@ bytestrings and their hexademical representation.")
 (define-public ghc-psqueues
   (package
     (name "ghc-psqueues")
-    (version "0.2.6.0")
+    (version "0.2.7.0")
     (source
      (origin
        (method url-fetch)
@@ -8291,10 +8603,8 @@ bytestrings and their hexademical representation.")
                            "psqueues-" version ".tar.gz"))
        (sha256
         (base32
-         "0n39s1i88j6s7vvsdhpbhcr3gpbwlzabwcc3nbd7nqb4kb4i0sls"))))
+         "1sjgc9bxh63kkdp59nbirx3xazr02ia5yhp4f4a0jnq1hj465wsc"))))
     (build-system haskell-build-system)
-    (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck")))
     (inputs
      `(("ghc-hashable" ,ghc-hashable)))
     (native-inputs
@@ -8349,7 +8659,7 @@ Typical applications of Priority Search Queues include:
 (define-public ghc-glob
   (package
     (name "ghc-glob")
-    (version "0.9.1")
+    (version "0.9.2")
     (source
      (origin
        (method url-fetch)
@@ -8358,7 +8668,7 @@ Typical applications of Priority Search Queues include:
                            "Glob-" version ".tar.gz"))
        (sha256
         (base32
-         "0rzmsknl02p332dxmm36fyrz3dpma7bchn0ymyjipxvqil20pjw0"))))
+         "1rbwcq9w9951qsnp13vqcm9r01yax2yh1wk8s4zxa3ckk9717iwg"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-dlist" ,ghc-dlist)
@@ -8379,7 +8689,7 @@ matching patterns against file paths.")
 (define-public ghc-errors
   (package
     (name "ghc-errors")
-    (version "2.2.2")
+    (version "2.3.0")
     (source
      (origin
        (method url-fetch)
@@ -8388,7 +8698,7 @@ matching patterns against file paths.")
                            "errors-" version ".tar.gz"))
        (sha256
         (base32
-         "13sflhglcm5skwrxb48fw96skdcx7ydiy4zg22200733pxhjncpn"))))
+         "0x8znwn31qcx6kqx99wp7bc86kckfb39ncz3zxvj1s07kxlfawk7"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-exceptions" ,ghc-exceptions)
@@ -8521,7 +8831,7 @@ between 2 and 3 times faster than the Mersenne Twister.")
 (define-public ghc-vector-algorithms
   (package
     (name "ghc-vector-algorithms")
-    (version "0.7.0.1")
+    (version "0.7.0.4")
     (source
      (origin
        (method url-fetch)
@@ -8530,23 +8840,10 @@ between 2 and 3 times faster than the Mersenne Twister.")
                            "vector-algorithms-" version ".tar.gz"))
        (sha256
         (base32
-         "0w4hf598lpxfg58rnimcqxrbnpqq2jmpjx82qa5md3q6r90hlipd"))))
+         "0mfa8ig9v69l41p2vb5jl4qmaln5y1rlzarr2mlgm8g1nvq8qqdg"))))
     (build-system haskell-build-system)
-    ;; The limits have been adjusted in a revision of the cabal file.
-    (arguments
-     '(#:configure-flags (list "--allow-newer=vector")
-       #:phases
-       (modify-phases %standard-phases
-         ;; The tests cannot be built due to type errors.
-         (add-after 'unpack 'do-not-build-quickcheck-tests
-           (lambda _
-             (substitute* "vector-algorithms.cabal"
-               (("\\!flag\\(properties\\)") "True"))
-             #t)))))
     (inputs
-     `(("ghc-vector" ,ghc-vector)
-       ("ghc-mtl" ,ghc-mtl)
-       ("ghc-mwc-random" ,ghc-mwc-random)))
+     `(("ghc-vector" ,ghc-vector)))
     (native-inputs
      `(("ghc-quickcheck" ,ghc-quickcheck)))
     (home-page "https://github.com/bos/math-functions")
@@ -8621,8 +8918,7 @@ module for more details.")
     (build-system haskell-build-system)
     (inputs `(("ghc-abstract-par" ,ghc-abstract-par)
               ("ghc-cereal" ,ghc-cereal)
-              ("ghc-random" ,ghc-random)
-              ("ghc-mtl" ,ghc-mtl)))
+              ("ghc-random" ,ghc-random)))
     (home-page "https://github.com/simonmar/monad-par")
     (synopsis "Combinators and extra features for Par monads for Haskell")
     (description "This Haskell package provides additional data structures,
@@ -8684,8 +8980,7 @@ This package also includes a simple reference implementation based on
               ("ghc-abstract-deque" ,ghc-abstract-deque)
               ("ghc-monad-par-extras" ,ghc-monad-par-extras)
               ("ghc-mwc-random" ,ghc-mwc-random)
-              ("ghc-parallel" ,ghc-parallel)
-              ("ghc-mtl" ,ghc-mtl)))
+              ("ghc-parallel" ,ghc-parallel)))
     (native-inputs `(("ghc-quickcheck" ,ghc-quickcheck)
                      ("ghc-hunit" ,ghc-hunit)
                      ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
@@ -8716,6 +9011,11 @@ that are much lighter weight than IO-threads.")
         (base32
          "0y27gafkib0x0fn39qfn2rkgsfrm09ng35sbb5dwr7rclhnxz59l"))))
     (build-system haskell-build-system)
+    (arguments
+     '(#:cabal-revision
+       ("2" "1bx70yqkn62ii17fjv3pig4hklrzkqd09zj67zzjiyjzmn04fir3")
+       ;; Two tests fail: "Discrete CDF is OK" and "Quantile is CDF inverse".
+       #:tests? #f))
     (inputs
      `(("ghc-aeson" ,ghc-aeson)
        ("ghc-base-orphans" ,ghc-base-orphans)
@@ -8735,8 +9035,6 @@ that are much lighter weight than IO-threads.")
        ("ghc-test-framework" ,ghc-test-framework)
        ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
        ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
-    (arguments
-     `(#:tests? #f)) ; FIXME: Test-Suite `spec` fails.
     (home-page "https://github.com/bos/mwc-random")
     (synopsis "Haskell library of statistical types, data, and functions")
     (description "This library provides a number of common functions
@@ -8764,7 +9062,7 @@ and regression and autocorrelation analysis.
 (define-public ghc-chunked-data
   (package
     (name "ghc-chunked-data")
-    (version "0.3.0")
+    (version "0.3.1")
     (source
      (origin
        (method url-fetch)
@@ -8773,7 +9071,7 @@ and regression and autocorrelation analysis.
                            "chunked-data-" version ".tar.gz"))
        (sha256
         (base32
-         "0bszq6fijnr4pmadzz89smj7kfmzx0ca3wd9ga8gv0in9jk9vgp1"))))
+         "16m7y7fwrirbjbqqcsfmr4yxa9qvfax6r7pw0zl9ky71ms0wa47p"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-vector" ,ghc-vector)
               ("ghc-semigroups" ,ghc-semigroups)
@@ -8788,7 +9086,7 @@ classy-prelude.")
 (define-public ghc-base-prelude
   (package
     (name "ghc-base-prelude")
-    (version "1.2.0.1")
+    (version "1.3")
     (source
      (origin
        (method url-fetch)
@@ -8797,7 +9095,7 @@ classy-prelude.")
                            "base-prelude-" version ".tar.gz"))
        (sha256
         (base32
-         "17hivs7lmsglagdlzxd9q9zsddmgqin2788mpq911zwnb57lj6l1"))))
+         "1zk728sd09hh2r4xwz4lazsrrgg5cshydn64932sm0vckplndk73"))))
     (build-system haskell-build-system)
     (home-page "https://github.com/nikita-volkov/base-prelude")
     (synopsis "The most complete prelude formed solely from the Haskell's base
@@ -8843,7 +9141,7 @@ statically known size.")
 (define-public ghc-contravariant-extras
   (package
     (name "ghc-contravariant-extras")
-    (version "0.3.3.1")
+    (version "0.3.4")
     (source
      (origin
        (method url-fetch)
@@ -8852,11 +9150,13 @@ statically known size.")
                            "contravariant-extras-" version ".tar.gz"))
        (sha256
         (base32
-         "1mbrgjybdx8fjdck4ldwi8955w4qnmm0ql56zix7dyn0s7s9spgk"))))
+         "0gg62ccl94kvh7mnvdq09pifqxjx2kgs189si90nmg44bafj7a9n"))))
     (build-system haskell-build-system)
-    (inputs `(("ghc-tuple-th" ,ghc-tuple-th)
-              ("ghc-contravariant" ,ghc-contravariant)
-              ("ghc-base-prelude" ,ghc-base-prelude)))
+    (inputs
+     `(("ghc-tuple-th" ,ghc-tuple-th)
+       ("ghc-contravariant" ,ghc-contravariant)
+       ("ghc-base-prelude" ,ghc-base-prelude)
+       ("ghc-semigroups" ,ghc-semigroups)))
     (home-page "https://github.com/nikita-volkov/contravariant-extras")
     (synopsis "Extras for the @code{ghc-contravariant} Haskell package")
     (description "This Haskell package provides extras for the
@@ -8866,7 +9166,7 @@ statically known size.")
 (define-public ghc-monadrandom
   (package
     (name "ghc-monadrandom")
-    (version "0.4.2.3")
+    (version "0.5.1.1")
     (source
      (origin
        (method url-fetch)
@@ -8875,10 +9175,9 @@ statically known size.")
                            "MonadRandom-" version ".tar.gz"))
        (sha256
         (base32
-         "1h1nhswrcmhy3mq6vd530p0df51fcnnf4csbwnljar7cf0mb2h6y"))))
+         "0w44jl1n3kqvqaflh82l1wj3xxbhzfs3kf4m8rk7w6fgg8llmnmb"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-transformers-compat" ,ghc-transformers-compat)
-              ("ghc-mtl" ,ghc-mtl)
               ("ghc-primitive" ,ghc-primitive)
               ("ghc-fail" ,ghc-fail)
               ("ghc-random" ,ghc-random)))
@@ -8891,7 +9190,7 @@ which consume random values.")
 (define-public ghc-either
   (package
     (name "ghc-either")
-    (version "4.4.1.1")
+    (version "5.0.1")
     (source
      (origin
        (method url-fetch)
@@ -8900,19 +9199,22 @@ which consume random values.")
                            "either-" version ".tar.gz"))
        (sha256
         (base32
-         "1lrlwqqnm6ibfcydlv5qvvssw7bm0c6yypy0rayjzv1znq7wp1xh"))))
+         "064hjfld7dkzs78sy30k5qkiva3hx24rax6dvzz5ygr2c0zypdkc"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-bifunctors" ,ghc-bifunctors)
               ("ghc-exceptions" ,ghc-exceptions)
               ("ghc-free" ,ghc-free)
               ("ghc-monad-control" ,ghc-monad-control)
               ("ghc-manodrandom" ,ghc-monadrandom)
-              ("ghc-mtl" ,ghc-mtl)
               ("ghc-mmorph" ,ghc-mmorph)
               ("ghc-profunctors" ,ghc-profunctors)
               ("ghc-semigroups" ,ghc-semigroups)
               ("ghc-semigroupoids" ,ghc-semigroupoids)
               ("ghc-transformers-base" ,ghc-transformers-base)))
+    (native-inputs
+     `(("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
     (home-page "https://github.com/ekmett/either")
     (synopsis "Provides an either monad transformer for Haskell")
     (description "This Haskell package provides an either monad transformer.")
@@ -8941,7 +9243,7 @@ ByteStrings in the style of other common *nix hex dump tools.")
 (define-public ghc-network-info
   (package
     (name "ghc-network-info")
-    (version "0.2.0.8")
+    (version "0.2.0.10")
     (source
      (origin
        (method url-fetch)
@@ -8950,7 +9252,7 @@ ByteStrings in the style of other common *nix hex dump tools.")
                            "network-info-" version ".tar.gz"))
        (sha256
         (base32
-         "0xndvg776241fgjmynxfpy81f1csjmh8dg33yf0c8m71ychz3pzc"))))
+         "0anmgzcpnz7nw3n6vq0r25m1s9l2svpwi83wza0lzkrlbnbzd02n"))))
     (build-system haskell-build-system)
     (home-page "https://github.com/jystic/network-info")
     (synopsis "Access the local computer's basic network configuration")
@@ -8975,8 +9277,16 @@ IPv4, IPv6 and MAC addresses.")
          "1zdka5jnm1h6k36w3nr647yf3b5lqb336g3fkprhd6san9x52xlj"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck"
-                               "--allow-newer=HUnit")))
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'strip-test-framework-constraints
+           (lambda _
+             (substitute* "uuid-types.cabal"
+               (("HUnit >=1\\.2 && < 1\\.4") "HUnit")
+               (("QuickCheck >=2\\.4 && < 2\\.9") "QuickCheck")
+               (("tasty >= 0\\.10 && < 0\\.12") "tasty")
+               (("tasty-hunit == 0\\.9\\.\\*") "tasty-hunit")
+               (("tasty-quickcheck == 0\\.8\\.\\*") "tasty-quickcheck")))))))
     (inputs `(("ghc-hashable" ,ghc-hashable)
               ("ghc-random" ,ghc-random)
               ("ghc-text" ,ghc-text)))
@@ -9008,8 +9318,18 @@ functions.")
          "09xhk42yhxvqmka0iqrv3338asncz8cap3j0ic0ps896f2581b6z"))))
     (build-system haskell-build-system)
     (arguments
-     `(#:configure-flags (list "--allow-newer=QuickCheck"
-                               "--allow-newer=HUnit")))
+     `(#:cabal-revision
+       ("2" "0m185q62jkfb5jsv358nxbnrkv8y8hd0qqvgvh22wvc5g9ipz0r9")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'strip-test-framework-constraints
+           (lambda _
+             (substitute* "uuid.cabal"
+               (("HUnit            >= 1\\.2   && < 1\\.4") "HUnit")
+               (("QuickCheck       >= 2\\.4   && < 2\\.10") "QuickCheck")
+               (("tasty            >= 0\\.10  && < 0\\.12") "tasty")
+               (("tasty-hunit      == 0\\.9\\.\\*") "tasty-hunit")
+               (("tasty-quickcheck == 0\\.8\\.\\*") "tasty-quickcheck")))))))
     (inputs `(("ghc-cryptohash-sha1" ,ghc-cryptohash-sha1)
               ("ghc-cryptohash-md5" ,ghc-cryptohash-md5)
               ("ghc-entropy" ,ghc-entropy)
@@ -9031,7 +9351,7 @@ parsing and printing @dfn{Universally Unique Identifiers} or UUIDs.")
 (define-public ghc-rebase
   (package
     (name "ghc-rebase")
-    (version "1.1")
+    (version "1.2.4")
     (source
      (origin
        (method url-fetch)
@@ -9040,7 +9360,7 @@ parsing and printing @dfn{Universally Unique Identifiers} or UUIDs.")
                            "rebase-" version ".tar.gz"))
        (sha256
         (base32
-         "1qkhnpcc4g2vd6jmbf3b6psqkan6hyawqzrwzqdd931hsb02l6ia"))))
+         "1gah2qwfpzwamnikbc5h4nv6dgvv9h16di9ka7946za3nibyasya"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-stm" ,ghc-stm)
               ("ghc-hashable" ,ghc-hashable)
@@ -9056,7 +9376,6 @@ parsing and printing @dfn{Universally Unique Identifiers} or UUIDs.")
               ("ghc-contravariant" ,ghc-contravariant)
               ("ghc-contravariant-extras" ,ghc-contravariant-extras)
               ("ghc-semigroups" ,ghc-semigroups)
-              ("ghc-mtl" ,ghc-mtl)
               ("ghc-either" ,ghc-either)
               ("ghc-fail" ,ghc-fail)
               ("ghc-base-prelude" ,ghc-base-prelude)))
@@ -9086,10 +9405,33 @@ The package is intended to rapidly evolve with the contribution from
 the community, with the missing features being added with pull-requests.")
     (license license:expat)))
 
+(define-public ghc-rerebase
+  (package
+    (name "ghc-rerebase")
+    (version "1.2.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/rerebase/rerebase-"
+             version ".tar.gz"))
+       (sha256
+        (base32
+         "11v6rmz7ql2rdx6mhb3lsal952lwihclfhh0m7fcnii5br0906ks"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-rebase" ,ghc-rebase)))
+    (home-page "https://github.com/nikita-volkov/rerebase")
+    (synopsis "Reexports from ``base'' with many other standard libraries")
+    (description "A rich drop-in replacement for ``base''.  For details and
+documentation please visit @uref{https://github.com/nikita-volkov/rerebase,
+the project's home page}.")
+    (license license:expat)))
+
 (define-public ghc-vector-builder
   (package
     (name "ghc-vector-builder")
-    (version "0.3.1")
+    (version "0.3.6")
     (source
      (origin
        (method url-fetch)
@@ -9098,17 +9440,18 @@ the community, with the missing features being added with pull-requests.")
                            "vector-builder-" version ".tar.gz"))
        (sha256
         (base32
-         "1l6sfgd2s107zkp1qd1w6jdjcbznp31769qf99pxar087f697wvp"))))
+         "06d2pa1fb3ydrl7l6rjazqyxv5i73v65x2f5fp0ypjxfbm6jsmn8"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-vector" ,ghc-vector)
               ("ghc-semigroups" ,ghc-semigroups)
               ("ghc-base-prelude" ,ghc-base-prelude)))
-    (native-inputs `(("ghc-tasty" ,ghc-tasty)
+    (native-inputs `(("ghc-attoparsec" ,ghc-attoparsec)
+                     ("ghc-tasty" ,ghc-tasty)
                      ("ghc-tasty-hunit" ,ghc-tasty-hunit)
                      ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)
                      ("ghc-hunit" ,ghc-hunit)
                      ("ghc-quickcheck-instances" ,ghc-quickcheck-instances)
-                     ("ghc-rebase" ,ghc-rebase)))
+                     ("ghc-rerebase" ,ghc-rerebase)))
     (home-page "https://github.com/nikita-volkov/vector-builder")
     (synopsis "Vector builder for Haskell")
     (description "This Haskell package provides an API for constructing vectors.
@@ -9123,7 +9466,7 @@ vector. ")
 (define-public ghc-foldl
   (package
     (name "ghc-foldl")
-    (version "1.3.5")
+    (version "1.4.3")
     (source
      (origin
        (method url-fetch)
@@ -9132,7 +9475,7 @@ vector. ")
                            "foldl-" version ".tar.gz"))
        (sha256
         (base32
-         "10qsp7dj2xsq4q2xm6x6b12y5pq32qf7my41hnkmdwwbccvhdxb2"))))
+         "13n0ca3hw5jzqf6rxsdbhbwkn61a9zlm13f0f205s60j3sc72jzk"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-mwc-randam" ,ghc-mwc-random)
               ("ghc-primitive" ,ghc-primitive)
@@ -9141,7 +9484,9 @@ vector. ")
               ("ghc-unordered-containers" ,ghc-unordered-containers)
               ("ghc-hashable" ,ghc-hashable)
               ("ghc-contravariant" ,ghc-contravariant)
+              ("ghc-semigroups" ,ghc-semigroups)
               ("ghc-profunctors" ,ghc-profunctors)
+              ("ghc-semigroupoids" ,ghc-semigroupoids)
               ("ghc-comonad" ,ghc-comonad)
               ("ghc-vector-builder" ,ghc-vector-builder)))
     (home-page "https://github.com/Gabriel439/Haskell-Foldl-Library")
@@ -9218,7 +9563,6 @@ data structures as non-empty.")
               ("ghc-mono-traversable" ,ghc-mono-traversable)))
     (native-inputs `(("ghc-hspec" ,ghc-hspec)
                      ("ghc-silently" ,ghc-silently)
-                     ("ghc-mtl" ,ghc-mtl)
                      ("ghc-safe" ,ghc-safe)
                      ("ghc-quickcheck" ,ghc-quickcheck)))
     (home-page "https://github.com/snoyberg/mono-traversable")
@@ -9231,14 +9575,14 @@ as well as a convenient Conduit module.")
 (define-public ghc-aws
   (package
     (name "ghc-aws")
-    (version "0.18")
+    (version "0.20")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://hackage.haskell.org/package/"
                            "aws-" version "/aws-" version ".tar.gz"))
        (sha256 (base32
-                "0h7473wkvc5xjzx5fd5k5fp70rjq5gqmn1cpy95mswvvfsq3irxj"))))
+                "0pwpabmypi1w8rni9qfwabgn95jks4h8dyw6889mn8xzsrhdhyf0"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f)) ; Tests require AWS credentials.
     (inputs
@@ -9256,8 +9600,8 @@ as well as a convenient Conduit module.")
        ("ghc-data-default" ,ghc-data-default)
        ("ghc-http-conduit" ,ghc-http-conduit)
        ("ghc-http-types" ,ghc-http-types)
+       ("ghc-lifted-base" ,ghc-lifted-base)
        ("ghc-monad-control" ,ghc-monad-control)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-network" ,ghc-network)
        ("ghc-old-locale" ,ghc-old-locale)
        ("ghc-safe" ,ghc-safe)
@@ -9289,7 +9633,7 @@ Web Services.")
 (define-public ghc-basement
   (package
     (name "ghc-basement")
-    (version "0.0.7")
+    (version "0.0.8")
     (source
      (origin
        (method url-fetch)
@@ -9297,7 +9641,7 @@ Web Services.")
                            "basement/basement-" version ".tar.gz"))
        (sha256
         (base32
-         "0w2g4k9bs2ph00p0fgrmcrng8ypdz6xis0r10g380nzkg2rvj0dm"))))
+         "194jw567di4q2758943q9rrwkbf9gl261my7qc21i9xhyabipx67"))))
     (build-system haskell-build-system)
     (home-page "https://github.com/haskell-foundation/foundation")
     (synopsis "Basic primitives for Foundation starter pack")
@@ -9309,7 +9653,7 @@ packages.")
 (define-public ghc-foundation
   (package
     (name "ghc-foundation")
-    (version "0.0.20")
+    (version "0.0.21")
     (source
      (origin
        (method url-fetch)
@@ -9317,8 +9661,18 @@ packages.")
                            "foundation/foundation-" version ".tar.gz"))
        (sha256
         (base32
-         "0bg4g0xf4pb2vmahnfp8c4f0a3v0av73lb5g8bwnp170khxfcsms"))))
+         "1q43y8wfj0wf9gdq2kzphwjwq6m5pvryy1lqgk954aq5z3ks1lsf"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'add-setup-script
+           (lambda _
+             ;; The usual "Setup.hs" script is missing from the source.
+             (with-output-to-file "Setup.hs"
+               (lambda ()
+                 (format #t "import Distribution.Simple~%")
+                 (format #t "main = defaultMain~%"))))))))
     (inputs `(("ghc-basement" ,ghc-basement)))
     (home-page "https://github.com/haskell-foundation/foundation")
     (synopsis "Alternative prelude with batteries and no dependencies")
@@ -9387,7 +9741,7 @@ operators for looping.")
 (define-public ghc-monad-logger
   (package
     (name "ghc-monad-logger")
-    (version "0.3.25.1")
+    (version "0.3.29")
     (source
      (origin
        (method url-fetch)
@@ -9396,7 +9750,7 @@ operators for looping.")
                            "monad-logger-" version ".tar.gz"))
        (sha256
         (base32
-         "0yv4fsi566zrn30j2g5l901lyqgmflhvzy4hji7ikcbh5d45m920"))))
+         "1z516s4pa9n94zf0l45mylssg07xr1d1m6zrz900p0iv3vfd07mv"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-transformers-compat" ,ghc-transformers-compat)
               ("ghc-text" ,ghc-text)
@@ -9410,7 +9764,6 @@ operators for looping.")
               ("ghc-transformers-base" ,ghc-transformers-base)
               ("ghc-monad-control" ,ghc-monad-control)
               ("ghc-monad-loops" ,ghc-monad-loops)
-              ("ghc-mtl" ,ghc-mtl)
               ("ghc-blaze-builder" ,ghc-blaze-builder)
               ("ghc-exceptions" ,ghc-exceptions)))
     (home-page "https://github.com/kazu-yamamoto/logger")
@@ -9425,7 +9778,7 @@ code locations of messages.")
 (define-public ghc-shakespeare
   (package
     (name "ghc-shakespeare")
-    (version "2.0.14")
+    (version "2.0.15")
     (source
      (origin
        (method url-fetch)
@@ -9434,7 +9787,7 @@ code locations of messages.")
                            "shakespeare-" version ".tar.gz"))
        (sha256
         (base32
-         "0j5zx8ka7d7scvb9shm7k3376qzl3k4kpim9aqqfs6n86901zpl4"))))
+         "1vk4b19zvwy4mpwaq9z3l3kfmz75gfyf7alhh0y112gspgpccm23"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-parsec" ,ghc-parsec)
               ("ghc-text" ,ghc-text)
@@ -9459,7 +9812,7 @@ interpolates variables according to the type being inserted.")
 (define-public ghc-securemem
   (package
     (name "ghc-securemem")
-    (version "0.1.9")
+    (version "0.1.10")
     (source
      (origin
        (method url-fetch)
@@ -9468,7 +9821,7 @@ interpolates variables according to the type being inserted.")
                            "securemem-" version ".tar.gz"))
        (sha256
         (base32
-         "0dkhhjxa7njc3qbgvd5a23rkvr39vj2kn2a9nk6yjg7a8b2hvdpy"))))
+         "19hnw2cfbsfjynxq1bq9f6djbxhsc1k751ml0y1ab3ah913mm29j"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-byteable" ,ghc-byteable)
               ("ghc-memory" ,ghc-memory)))
@@ -9519,6 +9872,9 @@ connections.")
         (base32
          "12l55b76bhya9q89mfmqmy6sl5v39b6gzrw5rf3f70vkb23nsv5a"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("1" "06f7pgmmc8456p3hc1y23kz1y127gfczy7s00wz1rls9g2sm2vi4")))
     (inputs `(("ghc-attoparsec" ,ghc-attoparsec)
               ("ghc-base-compat" ,ghc-base-compat)
               ("ghc-text" ,ghc-text)))
@@ -9531,7 +9887,7 @@ from aeson.")
 (define-public ghc-generics-sop
   (package
     (name "ghc-generics-sop")
-    (version "0.3.1.0")
+    (version "0.3.2.0")
     (source
      (origin
        (method url-fetch)
@@ -9540,7 +9896,7 @@ from aeson.")
                            "generics-sop-" version ".tar.gz"))
        (sha256
         (base32
-         "1bazlhgmxcwv7vd44jhdx74cnhmaz6yy47jxfycapjj4mjrnp0x7"))))
+         "168v62i845jh9jbfaz3ldz8svz4wmzq9mf2vhb7pxlnbkk8fqq1h"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-transformers-compat" ,ghc-transformers-compat)))
     (home-page "https://github.com/well-typed/generics-sop")
@@ -9554,7 +9910,7 @@ each constructor are represented using an n-ary product.")
 (define-public ghc-uri-bytestring
   (package
     (name "ghc-uri-bytestring")
-    (version "0.3.1.0")
+    (version "0.3.2.0")
     (source
      (origin
        (method url-fetch)
@@ -9563,7 +9919,7 @@ each constructor are represented using an n-ary product.")
                            "uri-bytestring-" version ".tar.gz"))
        (sha256
         (base32
-         "04qjv1sgyrdg538290p9hqnvyxnahvr5cjwl8vm1rn9j0fv3ymq9"))))
+         "1q04j5ybvk37zk2m0bkjwyhblz0ymdj0cn4rvsvdca1ikn5xdv5c"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-attoparsec" ,ghc-attoparsec)
               ("ghc-fail" ,ghc-fail)
@@ -9588,7 +9944,7 @@ parser that uses ByteStrings for parsing and representing the URI data.")
 (define-public ghc-http-api-data
   (package
     (name "ghc-http-api-data")
-    (version "0.3.7.1")
+    (version "0.3.8.1")
     (source
      (origin
        (method url-fetch)
@@ -9597,7 +9953,7 @@ parser that uses ByteStrings for parsing and representing the URI data.")
                            "http-api-data-" version ".tar.gz"))
        (sha256
         (base32
-         "1zbmf0kkfsw7pfznisi205gh7jd284gfarxsyiavd2iw26akwqwc"))))
+         "1cq6459b8wz6nvkvpi89dg189n5q2xdq4rdq435hf150555vmskf"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f))  ;  FIXME: Tests require QuickCheck >= 2.9
     (inputs `(("ghc-attoparsec" ,ghc-attoparsec)
@@ -9619,7 +9975,7 @@ Haskell data types to and from HTTP API data.")
 (define-public ghc-persistent
   (package
     (name "ghc-persistent")
-    (version "2.7.3.1")
+    (version "2.8.2")
     (source
      (origin
        (method url-fetch)
@@ -9628,7 +9984,7 @@ Haskell data types to and from HTTP API data.")
                            "persistent-" version ".tar.gz"))
        (sha256
         (base32
-         "1jbvavdvr9qz5ld7vf6l1jgiadhmxx6zc4vqsdk9ivfq6d5wlg1p"))))
+         "1h0yijbf1yiwl50klyafy4ln99j8bib4kgbzviw7fc4y4mwv4sv9"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-old-locale" ,ghc-old-locale)
               ("ghc-text" ,ghc-text)
@@ -9651,10 +10007,10 @@ Haskell data types to and from HTTP API data.")
               ("ghc-blaze-html" ,ghc-blaze-html)
               ("ghc-blaze-markup" ,ghc-blaze-markup)
               ("ghc-silently" ,ghc-silently)
-              ("ghc-mtl" ,ghc-mtl)
               ("ghc-fast-logger" ,ghc-fast-logger)
               ("ghc-scientific" ,ghc-scientific)
-              ("ghc-tagged" ,ghc-tagged)))
+              ("ghc-tagged" ,ghc-tagged)
+              ("ghc-void" ,ghc-void)))
     (native-inputs `(("ghc-hspec" ,ghc-hspec)))
     (home-page "https://www.yesodweb.com/book/persistent")
     (synopsis "Type-safe, multi-backend data serialization for Haskell")
@@ -9666,7 +10022,7 @@ way.")
 (define-public ghc-aeson-compat
   (package
     (name "ghc-aeson-compat")
-    (version "0.3.7.1")
+    (version "0.3.8")
     (source
      (origin
        (method url-fetch)
@@ -9675,7 +10031,7 @@ way.")
                            "aeson-compat-" version ".tar.gz"))
        (sha256
         (base32
-         "1jya3lm9imclhb8qqihv39hhb62vvs3qpws7pc5fc23vwg0hsx2r"))))
+         "0j4v13pgk21zy8hqkbx8hw0n05jdl17qphxz9rj4h333pr547r3i"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f))  ;  FIXME: Tests require QuickCheck >= 2.10
     (inputs `(("ghc-base-compat" ,ghc-base-compat)
@@ -9701,7 +10057,7 @@ ghc-aeson.")
 (define-public ghc-persistent-template
   (package
     (name "ghc-persistent-template")
-    (version "2.5.3.1")
+    (version "2.5.4")
     (source
      (origin
        (method url-fetch)
@@ -9710,8 +10066,11 @@ ghc-aeson.")
                            "persistent-template-" version ".tar.gz"))
        (sha256
         (base32
-         "0449piw3n02q7dag7k1pakfmzmf3ms4wk1qmnagczpm1ckajinwd"))))
+         "008afcy7zbw7bzp9jww8gdldb51kfm0fg4p0x4xcp61gx4679bjc"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("2" "03qgwk32krldph3blw5agiqcpccr3649hajyn8wm9k71zz82dpn6")))
     (inputs `(("ghc-persistent" ,ghc-persistent)
               ("ghc-monad-control" ,ghc-monad-control)
               ("ghc-text" ,ghc-text)
@@ -9744,6 +10103,9 @@ functions for the ghc-persistent package.")
         (base32
          "1193fplsjm1lcr05xwvkj1rsyzx74i755f6kw3ikmxbsv0bv0l3m"))))
     (build-system haskell-build-system)
+    (arguments
+     `(#:cabal-revision
+       ("1" "16bjwcsaghqqmyi69rq65dn3ydifyfaabq3ns37apdm00mwqbcj2")))
     (home-page
      "https://github.com/fpco/unliftio/tree/master/unliftio-core#readme")
     (synopsis "The MonadUnliftIO typeclass for unlifting monads to IO")
@@ -9755,7 +10117,7 @@ functions.")
 (define-public ghc-microlens
   (package
     (name "ghc-microlens")
-    (version "0.4.8.3")
+    (version "0.4.9.1")
     (source
      (origin
        (method url-fetch)
@@ -9764,7 +10126,7 @@ functions.")
                            "microlens-" version ".tar.gz"))
        (sha256
         (base32
-         "17qx2mbqdrlnkc3gxq8njbp7qw8nh51drmz6fc8khgj9bls5ni2k"))))
+         "0j2nzf0vpx2anvsrg2w0vy2z4jn3kkcs2n6glkzblhn1j9piqh51"))))
     (build-system haskell-build-system)
     (home-page
      "https://github.com/aelve/microlens")
@@ -9780,7 +10142,7 @@ stripped.  As the result, this package has no dependencies.")
 (define-public ghc-microlens-th
   (package
     (name "ghc-microlens-th")
-    (version "0.4.1.3")
+    (version "0.4.2.2")
     (source
      (origin
        (method url-fetch)
@@ -9789,9 +10151,10 @@ stripped.  As the result, this package has no dependencies.")
                            "microlens-th-" version ".tar.gz"))
        (sha256
         (base32
-         "15a12cqxlgbcn1n73zwrxnp2vfm8b0ma0a0sdd8zmjbs8zy3np4f"))))
+         "02nj7lnl61yffi3c6wn341arxhld5r0vj6nzcb5zmqjhnqsv8c05"))))
     (build-system haskell-build-system)
-    (inputs `(("ghc-microlens" ,ghc-microlens)))
+    (inputs `(("ghc-microlens" ,ghc-microlens)
+              ("ghc-th-abstraction" ,ghc-th-abstraction)))
     (home-page
      "https://github.com/aelve/microlens")
     (synopsis "Automatic generation of record lenses for
@@ -9805,7 +10168,7 @@ used both from lens and microlens).")
 (define-public ghc-unliftio
   (package
     (name "ghc-unliftio")
-    (version "0.2.4.0")
+    (version "0.2.7.0")
     (source
      (origin
        (method url-fetch)
@@ -9815,7 +10178,7 @@ used both from lens and microlens).")
              ".tar.gz"))
        (sha256
         (base32
-         "0vpncmwaq5zb6bziqfns4qdgxmq8ky0rlxna2yngxp170s5zxx9z"))))
+         "0qql93lq5w7qghl454cc3s1i8v1jb4h08n82fqkw0kli4g3g9njs"))))
     (build-system haskell-build-system)
     (arguments `(#:tests? #f)) ; FIXME: hspec-discover not in PATH
     (inputs
@@ -9834,7 +10197,7 @@ working with it.")
 (define-public ghc-persistent-sqlite
   (package
     (name "ghc-persistent-sqlite")
-    (version "2.6.4")
+    (version "2.8.2")
     (source
      (origin
        (method url-fetch)
@@ -9843,7 +10206,7 @@ working with it.")
                            "persistent-sqlite-" version ".tar.gz"))
        (sha256
         (base32
-         "16mc2ra0hbyyc8ckjlxxc11bpskdymbr8c3g6ih6wzik639xprbm"))))
+         "1chbmvjz46smhgnzhha3bbkhys3fys6dip1jr4v7xp1jf78zbyp6"))))
     (build-system haskell-build-system)
     (inputs `(("ghc-persistent" ,ghc-persistent)
               ("ghc-unliftio-core" ,ghc-unliftio-core)
@@ -9870,7 +10233,7 @@ system dependencies.")
 (define-public ghc-email-validate
   (package
     (name "ghc-email-validate")
-    (version "2.3.2.1")
+    (version "2.3.2.6")
     (source
      (origin
        (method url-fetch)
@@ -9881,7 +10244,7 @@ system dependencies.")
              ".tar.gz"))
        (sha256
         (base32
-         "0qvxysiap3r4mi3xff5nsk9qv6diqxfgwj186bypbamzvzlz0lav"))))
+         "0chgylvc8xmhp933rdbmpg5sv4y7yg2h6kbf0ip1dzmbd5p55pa5"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-attoparsec" ,ghc-attoparsec)
@@ -9896,26 +10259,10 @@ system dependencies.")
 address string against RFC 5322.")
     (license license:bsd-3)))
 
-(define-public ghc-semigroupoids-5.2.2
-  (package
-    (inherit ghc-semigroupoids)
-    (name "ghc-semigroupoids")
-    (version "5.2.2")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "https://hackage.haskell.org/package/"
-                                  "semigroupoids-" version "/semigroupoids-"
-                                   version ".tar.gz"))
-              (sha256
-               (base32
-                "17i96y4iqj8clcs090lf6k0ij3j16nj14vsfwz0mm9nd6i4gbpp4"))))
-    (inputs `(("ghc-unordered-containers" ,ghc-unordered-containers)
-              ,@(package-inputs ghc-semigroupoids)))))
-
 (define-public ghc-bytes
   (package
    (name "ghc-bytes")
-   (version "0.15.4")
+   (version "0.15.5")
    (source
     (origin
      (method url-fetch)
@@ -9926,12 +10273,11 @@ address string against RFC 5322.")
      (file-name (string-append name "-" version ".tar.gz"))
      (sha256
       (base32
-       "121x3iqlm8pghw8cd9g30cnqbl7jrdpfjxdanmqdqllajw6xivrm"))))
+       "063il2vrn0p88r9gzndh4ijs0mxj37khkc9ym9bqdsv7ngk3b683"))))
    (build-system haskell-build-system)
    (inputs `(("ghc-cereal" ,ghc-cereal)
              ("cabal-doctest" ,cabal-doctest)
-             ("ghc-doctest" ,ghc-doctest-0.13)
-             ("ghc-mtl" ,ghc-mtl)
+             ("ghc-doctest" ,ghc-doctest)
              ("ghc-scientific" ,ghc-scientific)
              ("ghc-text" ,ghc-text)
              ("ghc-transformers-compat" ,ghc-transformers-compat)
@@ -10031,7 +10377,6 @@ This package provides an orphan instance.")
     (inputs
      `(("ghc-network" ,ghc-network)
        ("ghc-parsec" ,ghc-parsec)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-hunit" ,ghc-hunit)
        ("ghc-regex-compat" ,ghc-regex-compat)
        ("ghc-hslogger" ,ghc-hslogger)
@@ -10087,8 +10432,7 @@ example code on the home page for a quick introduction.")
          "1x2abg2q9d26h1vzj40r6k7k3gqgappbs4g9d853vvg77837km4i"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-random" ,ghc-random)))
+     `(("ghc-random" ,ghc-random)))
     (home-page "http://wiki.haskell.org/Operational")
     (synopsis "Implementation of difficult monads made easy with operational semantics")
     (description
@@ -10133,7 +10477,7 @@ tools are not needed to actually run Gtk2Hs programs.")
 (define-public ghc-chart
   (package
     (name "ghc-chart")
-    (version "1.8.3")
+    (version "1.9")
     (source
      (origin
        (method url-fetch)
@@ -10141,11 +10485,10 @@ tools are not needed to actually run Gtk2Hs programs.")
                            "Chart-" version ".tar.gz"))
        (sha256
         (base32
-         "13s64fhb2pmkdmx5bkgbgcn25qjihs364fvr47a1dw25f804kiy1"))))
+         "1f5azj17y8xsb3gjhf7gg1gnnlq12rxkmfjmgcly314d7vghs05z"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-old-locale" ,ghc-old-locale)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-lens" ,ghc-lens)
        ("ghc-colour" ,ghc-colour)
        ("ghc-data-default-class" ,ghc-data-default-class)
@@ -10183,4 +10526,842 @@ The command line tool can compile a width table to Haskell code that assigns
 widths to the Char type.")
     (license license:bsd-3)))
 
+(define-public ghc-wcwidth-bootstrap
+  (package
+    (inherit ghc-wcwidth)
+    (name "ghc-wcwidth-bootstrap")
+    (inputs
+     `(("ghc-setlocale" ,ghc-setlocale)
+       ("ghc-utf8-string" ,ghc-utf8-string)
+       ("ghc-attoparsec" ,ghc-attoparsec-bootstrap)))
+    (properties '(hidden? #t))))
+
+(define-public ghc-rio
+  (package
+    (name "ghc-rio")
+    (version "0.1.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/rio/rio-"
+             version ".tar.gz"))
+       (sha256
+        (base32
+         "064h8a4hp53a479d3ak0vmqbx8hi0cpg7zn4wp23rjy26dka8p7g"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'add-setup-script
+           (lambda _
+             ;; The usual "Setup.hs" script is missing from the source.
+             (with-output-to-file "Setup.hs"
+               (lambda ()
+                 (format #t "import Distribution.Simple~%")
+                 (format #t "main = defaultMain~%"))))))))
+    (inputs
+     `(("ghc-exceptions" ,ghc-exceptions)
+       ("ghc-hashable" ,ghc-hashable)
+       ("ghc-microlens" ,ghc-microlens)
+       ("ghc-primitive" ,ghc-primitive)
+       ("ghc-text" ,ghc-text)
+       ("ghc-typed-process" ,ghc-typed-process)
+       ("ghc-unliftio" ,ghc-unliftio)
+       ("ghc-unordered-containers" ,ghc-unordered-containers)
+       ("ghc-vector" ,ghc-vector)))
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)
+       ("hspec-discover" ,hspec-discover)))
+    (home-page "https://github.com/commercialhaskell/rio#readme")
+    (synopsis "A standard library for Haskell")
+    (description "This package works as a prelude replacement for Haskell,
+providing more functionality and types out of the box than the standard
+prelude (such as common data types like @code{ByteString} and
+@code{Text}), as well as removing common ``gotchas'', like partial
+functions and lazy I/O.  The guiding principle here is:
+@itemize
+@item If something is safe to use in general and has no expected naming
+conflicts, expose it.
+@item If something should not always be used, or has naming conflicts,
+expose it from another module in the hierarchy.
+@end itemize")
+    (license license:expat)))
+
+(define-public ghc-cairo
+  (package
+    (name "ghc-cairo")
+    (version "0.13.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/cairo/"
+                           "cairo-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1wxylv4d8120ri0vgar168ikqa9m6533ipdwi38qlmxmw20ws2j2"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:modules ((guix build haskell-build-system)
+                  (guix build utils)
+                  (ice-9 match)
+                  (srfi srfi-26))
+       #:phases
+       (modify-phases %standard-phases
+         ;; FIXME: This is a copy of the standard configure phase with a tiny
+         ;; difference: this package needs the -package-db flag to be passed
+         ;; to "runhaskell" in addition to the "configure" action, because it
+         ;; depends on gtk2hs-buildtools, which provide setup hooks.  Without
+         ;; this option the Setup.hs file cannot be evaluated.  The
+         ;; haskell-build-system should be changed to pass "-package-db" to
+         ;; "runhaskell" in any case.
+         (replace 'configure
+           (lambda* (#:key outputs inputs tests? (configure-flags '())
+                     #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (name-version (strip-store-file-name out))
+                    (input-dirs (match inputs
+                                  (((_ . dir) ...)
+                                   dir)
+                                  (_ '())))
+                    (ghc-path (getenv "GHC_PACKAGE_PATH"))
+                    (params (append `(,(string-append "--prefix=" out))
+                                    `(,(string-append "--libdir=" out "/lib"))
+                                    `(,(string-append "--bindir=" out "/bin"))
+                                    `(,(string-append
+                                        "--docdir=" out
+                                        "/share/doc/" name-version))
+                                    '("--libsubdir=$compiler/$pkg-$version")
+                                    '("--package-db=../package.conf.d")
+                                    '("--global")
+                                    `(,@(map
+                                         (cut string-append "--extra-include-dirs=" <>)
+                                         (search-path-as-list '("include") input-dirs)))
+                                    `(,@(map
+                                         (cut string-append "--extra-lib-dirs=" <>)
+                                         (search-path-as-list '("lib") input-dirs)))
+                                    (if tests?
+                                        '("--enable-tests")
+                                        '())
+                                    configure-flags)))
+               (unsetenv "GHC_PACKAGE_PATH")
+               (apply invoke "runhaskell" "-package-db=../package.conf.d"
+                      "Setup.hs" "configure" params)
+               (setenv "GHC_PACKAGE_PATH" ghc-path)
+               #t))))))
+    (inputs
+     `(("ghc-utf8-string" ,ghc-utf8-string)
+       ("ghc-text" ,ghc-text)
+       ("cairo" ,cairo)))
+    (native-inputs
+     `(("ghc-gtk2hs-buildtools" ,ghc-gtk2hs-buildtools)
+       ("pkg-config" ,pkg-config)))
+    (home-page "http://projects.haskell.org/gtk2hs/")
+    (synopsis "Haskell bindings to the Cairo vector graphics library")
+    (description
+     "Cairo is a library to render high quality vector graphics.  There exist
+various backends that allows rendering to Gtk windows, PDF, PS, PNG and SVG
+documents, amongst others.")
+    (license license:bsd-3)))
+
+(define-public ghc-chart-cairo
+  (package
+    (name "ghc-chart-cairo")
+    (version "1.9")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/Chart-cairo/"
+                           "Chart-cairo-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0iany6lfyfb1cw0pxfs5aw5k0a6x41m6ql9ad9w59biwdckbsyqr"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-old-locale" ,ghc-old-locale)
+       ("ghc-cairo" ,ghc-cairo)
+       ("ghc-colour" ,ghc-colour)
+       ("ghc-data-default-class" ,ghc-data-default-class)
+       ("ghc-operational" ,ghc-operational)
+       ("ghc-lens" ,ghc-lens)
+       ("ghc-chart" ,ghc-chart)))
+    (home-page "https://github.com/timbod7/haskell-chart/wiki")
+    (synopsis "Cairo backend for Charts")
+    (description "This package provides a Cairo vector graphics rendering
+backend for the Charts library.")
+    (license license:bsd-3)))
+
+(define-public ghc-atomic-write
+  (package
+    (name "ghc-atomic-write")
+    (version "0.2.0.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://hackage.haskell.org/package/atomic-write/atomic-write-"
+             version
+             ".tar.gz"))
+       (sha256
+        (base32
+         "1iaq0hprxcv0sl1sgwcgmm87zraf738va1bciwnx2jkk3k1v9iyv"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-temporary" ,ghc-temporary)
+       ("ghc-unix-compat" ,ghc-unix-compat)
+       ("ghc-text" ,ghc-text)))
+    (native-inputs
+     `(("ghc-temporary" ,ghc-temporary)
+       ("ghc-unix-compat" ,ghc-unix-compat)
+       ("ghc-text" ,ghc-text)
+       ("ghc-hspec" ,ghc-hspec)
+       ("hspec-discover" ,hspec-discover)))
+    (home-page "https://github.com/stackbuilders/atomic-write")
+    (synopsis "Atomically write to a file")
+    (description
+     "Atomically write to a file on POSIX-compliant systems while preserving
+permissions.  @code{mv} is an atomic operation.  This makes it simple to write
+to a file atomically just by using the @code{mv} operation.  However, this
+will destroy the permissions on the original file.  This library preserves
+permissions while atomically writing to a file.")
+    (license license:expat)))
+
+(define-public ghc-cereal-conduit
+  (package
+    (name "ghc-cereal-conduit")
+    (version "0.8.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "cereal-conduit/cereal-conduit-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "1srr7agvgfw78q5s1npjq5sgynvhjgllpihiv37ylkwqm4c4ap6r"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-conduit" ,ghc-conduit)
+       ("ghc-resourcet" ,ghc-resourcet)
+       ("ghc-cereal" ,ghc-cereal)))
+    (native-inputs
+     `(("ghc-hunit" ,ghc-hunit)))
+    (home-page "https://github.com/snoyberg/conduit")
+    (synopsis "Turn Data.Serialize Gets and Puts into Sources, Sinks, and Conduits")
+    (description
+     "This package turn @code{Data.Serialize} @code{Gets} and @code{Puts} into
+@code{Sources}, @code{Sinks}, and @code{Conduits}.")
+    (license license:bsd-3)))
+
+(define-public ghc-lzma
+  (package
+    (name "ghc-lzma")
+    (version "0.0.0.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/lzma/"
+                           "lzma-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0i416gqi8j55nd1pqbkxvf3f6hn6fjys6gq98lkkxphva71j30xg"))))
+    (build-system haskell-build-system)
+    (arguments
+     '(#:tests? #f ; requires older versions of QuickCheck and tasty.
+       #:cabal-revision
+       ("3" "1sify6gnsalyp6dakfzi0mdy5jcz2kcp9jsdsgkmxd40nfzgd44m")))
+    (native-inputs
+     `(("ghc-hunit" ,ghc-hunit)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-tasty" ,ghc-tasty)
+       ("ghc-tasty-hunit" ,ghc-tasty-hunit)
+       ("ghc-tasty-quickcheck" ,ghc-tasty-quickcheck)))
+    (home-page "https://github.com/hvr/lzma")
+    (synopsis "LZMA/XZ compression and decompression")
+    (description
+     "This package provides a pure interface for compressing and
+decompressing LZMA streams of data represented as lazy @code{ByteString}s.  A
+monadic incremental interface is provided as well.")
+    (license license:bsd-3)))
+
+(define-public ghc-stm-conduit
+  (package
+    (name "ghc-stm-conduit")
+    (version "4.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/stm-conduit/"
+                           "stm-conduit-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0paapljn7nqfzrx889y0n8sszci38mdiaxkgr0bb00ph9246rr7z"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-stm" ,ghc-stm)
+       ("ghc-stm-chans" ,ghc-stm-chans)
+       ("ghc-cereal" ,ghc-cereal)
+       ("ghc-cereal-conduit" ,ghc-cereal-conduit)
+       ("ghc-conduit" ,ghc-conduit)
+       ("ghc-conduit-extra" ,ghc-conduit-extra)
+       ("ghc-exceptions" ,ghc-exceptions)
+       ("ghc-resourcet" ,ghc-resourcet)
+       ("ghc-async" ,ghc-async)
+       ("ghc-monad-loops" ,ghc-monad-loops)
+       ("ghc-unliftio" ,ghc-unliftio)))
+    (native-inputs
+     `(("ghc-doctest" ,ghc-doctest)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-hunit" ,ghc-hunit)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+       ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)))
+    (home-page "https://github.com/cgaebel/stm-conduit")
+    (synopsis "Introduces conduits to channels and promotes using conduits concurrently")
+    (description
+     "This package provides two simple conduit wrappers around STM channels: a
+source and a sink.")
+    (license license:bsd-3)))
+
+(define-public ghc-bindings-dsl
+  (package
+    (name "ghc-bindings-dsl")
+    (version "1.0.25")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/bindings-DSL/"
+                           "bindings-DSL-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0kqrd78nspl3lk4a0fqn47d8dirjg3b24dkvkigcrlb81hw35pk3"))))
+    (build-system haskell-build-system)
+    (home-page "https://github.com/jwiegley/bindings-dsl/wiki")
+    (synopsis "FFI domain specific language, on top of hsc2hs")
+    (description
+     "This is a set of macros to be used when writing Haskell FFI.  They were
+designed to be able to fully describe C interfaces, so that @code{hsc2hs} can
+extract from them all Haskell code needed to mimic such interfaces.  All
+Haskell names used are automatically derived from C names, structures are
+mapped to Haskell instances of @code{Storable}, and there are also macros you
+can use with C code to help write bindings to inline functions or macro
+functions.")
+    (license license:bsd-3)))
+
+(define-public ghc-lzma-conduit
+  (package
+    (name "ghc-lzma-conduit")
+    (version "1.2.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/lzma-conduit/"
+                           "lzma-conduit-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0hm72da7xk9l3zxjh274yg444vf405djxqbkf3q3p2qhicmxlmg9"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-conduit" ,ghc-conduit)
+       ("ghc-lzma" ,ghc-lzma)
+       ("ghc-resourcet" ,ghc-resourcet)))
+    (native-inputs
+     `(("ghc-base-compat" ,ghc-base-compat)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+       ("ghc-test-framework-quickcheck2" ,ghc-test-framework-quickcheck2)
+       ("ghc-hunit" ,ghc-hunit)
+       ("ghc-quickcheck" ,ghc-quickcheck)))
+    (home-page "https://github.com/alphaHeavy/lzma-conduit")
+    (synopsis "Conduit interface for lzma/xz compression")
+    (description
+     "This package provides a @code{Conduit} interface for the LZMA
+compression algorithm used in the @code{.xz} file format.")
+    (license license:bsd-3)))
+
+(define-public ghc-bzlib-conduit
+  (package
+    (name "ghc-bzlib-conduit")
+    (version "0.3.0.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/bzlib-conduit/"
+                           "bzlib-conduit-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0fd2hnr782s7qgipazg2yxwia9qqhkvm9bcm90773c3zkxa13n23"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-bindings-dsl" ,ghc-bindings-dsl)
+       ("ghc-conduit" ,ghc-conduit)
+       ("ghc-data-default-class" ,ghc-data-default-class)
+       ("ghc-resourcet" ,ghc-resourcet)))
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)
+       ("ghc-random" ,ghc-random)))
+    (home-page "https://github.com/snoyberg/bzlib-conduit")
+    (synopsis "Streaming compression/decompression via conduits")
+    (description
+     "This package provides Haskell bindings to bzlib and Conduit support for
+streaming compression and decompression.")
+    (license license:bsd-3)))
+
+(define-public ghc-pqueue
+  (package
+    (name "ghc-pqueue")
+    (version "1.4.1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "pqueue/pqueue-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1zvwm1zcqqq5n101s1brjhgbay8rf9fviq6gxbplf40i63m57p1x"))))
+    (build-system haskell-build-system)
+    (native-inputs
+     `(("ghc-quickcheck" ,ghc-quickcheck)))
+    (home-page "https://hackage.haskell.org/package/pqueue")
+    (synopsis "Reliable, persistent, fast priority queues")
+    (description
+     "This package provides a fast, reliable priority queue implementation
+based on a binomial heap.")
+    (license license:bsd-3)))
+
+(define-public ghc-conduit-algorithms
+  (package
+    (name "ghc-conduit-algorithms")
+    (version "0.0.8.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "conduit-algorithms/conduit-algorithms-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "07gx2q3d1bbfw14q41rmqg0i4m018pci10lswc0k1ij6lw7sb9fd"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-async" ,ghc-async)
+       ("ghc-bzlib-conduit" ,ghc-bzlib-conduit)
+       ("ghc-conduit" ,ghc-conduit)
+       ("ghc-conduit-combinators" ,ghc-conduit-combinators)
+       ("ghc-conduit-extra" ,ghc-conduit-extra)
+       ("ghc-exceptions" ,ghc-exceptions)
+       ("ghc-lzma-conduit" ,ghc-lzma-conduit)
+       ("ghc-monad-control" ,ghc-monad-control)
+       ("ghc-pqueue" ,ghc-pqueue)
+       ("ghc-resourcet" ,ghc-resourcet)
+       ("ghc-stm" ,ghc-stm)
+       ("ghc-stm-conduit" ,ghc-stm-conduit)
+       ("ghc-streaming-commons" ,ghc-streaming-commons)
+       ("ghc-unliftio-core" ,ghc-unliftio-core)
+       ("ghc-vector" ,ghc-vector)))
+    (native-inputs
+     `(("ghc-hunit" ,ghc-hunit)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+       ("ghc-test-framework-th" ,ghc-test-framework-th)))
+    (home-page "https://github.com/luispedro/conduit-algorithms#readme")
+    (synopsis "Conduit-based algorithms")
+    (description
+     "This package provides algorithms on @code{Conduits}, including higher
+level asynchronous processing and some other utilities.")
+    (license license:expat)))
+
+(define-public ghc-interpolate
+  (package
+    (name "ghc-interpolate")
+    (version "0.2.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/interpolate/"
+                           "interpolate-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1gkaj98yz363v38fv78sqby236mp8yqwqcilx7kr2b9z0w3204bf"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-haskell-src-meta" ,ghc-haskell-src-meta)))
+    (native-inputs
+     `(("ghc-base-compat" ,ghc-base-compat)
+       ("ghc-hspec" ,ghc-hspec)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-quickcheck-instances" ,ghc-quickcheck-instances)
+       ("ghc-text" ,ghc-text)
+       ("hspec-discover" ,hspec-discover)))
+    (home-page "https://github.com/sol/interpolate")
+    (synopsis "String interpolation library")
+    (description "This package provides a string interpolation library for
+Haskell.")
+    (license license:expat)))
+
+(define-public ghc-hpack
+  (package
+    (name "ghc-hpack")
+    (version "0.28.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/hpack/"
+                           "hpack-" version ".tar.gz"))
+       (sha256
+        (base32
+         "18w0h76jdp3mk9vin8da9iz3cwhcxmw787xy8wlh8bxcpcr16q5r"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-aeson" ,ghc-aeson)
+       ("ghc-bifunctors" ,ghc-bifunctors)
+       ("ghc-cryptonite" ,ghc-cryptonite)
+       ("ghc-glob" ,ghc-glob)
+       ("ghc-http-client" ,ghc-http-client)
+       ("ghc-http-client-tls" ,ghc-http-client-tls)
+       ("ghc-http-types" ,ghc-http-types)
+       ("ghc-scientific" ,ghc-scientific)
+       ("ghc-text" ,ghc-text)
+       ("ghc-unordered-containers" ,ghc-unordered-containers)
+       ("ghc-vector" ,ghc-vector)
+       ("ghc-yaml" ,ghc-yaml)))
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)
+       ("ghc-hunit" ,ghc-hunit)
+       ("ghc-interpolate" ,ghc-interpolate)
+       ("ghc-mockery" ,ghc-mockery)
+       ("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-temporary" ,ghc-temporary)
+       ("hspec-discover" ,hspec-discover)))
+    (home-page "https://github.com/sol/hpack")
+    (synopsis "Tools for an alternative Haskell package format")
+    (description
+     "Hpack is a format for Haskell packages.  It is an alternative to the
+Cabal package format and follows different design principles.  Hpack packages
+are described in a file named @code{package.yaml}.  Both @code{cabal2nix} and
+@code{stack} support @code{package.yaml} natively.  For other build tools the
+@code{hpack} executable can be used to generate a @code{.cabal} file from
+@code{package.yaml}.")
+    (license license:expat)))
+
+(define-public ghc-raw-strings-qq
+  (package
+    (name "ghc-raw-strings-qq")
+    (version "1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "raw-strings-qq/raw-strings-qq-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "1lxy1wy3awf52968iy5y9r5z4qgnn2sxkdrh7js3m9gadb11w09f"))))
+    (build-system haskell-build-system)
+    (native-inputs `(("ghc-hunit" ,ghc-hunit)))
+    (home-page "https://github.com/23Skidoo/raw-strings-qq")
+    (synopsis "Raw string literals for Haskell")
+    (description
+     "This package provides a quasiquoter for raw string literals, i.e. string
+literals that don't recognise the standard escape sequences.  Basically, they
+make your code more readable by freeing you from the responsibility to escape
+backslashes.  They are useful when working with regular expressions,
+DOS/Windows paths and markup languages (such as XML).")
+    (license license:bsd-3)))
+
+(define-public ghc-inline-c
+  (package
+    (name "ghc-inline-c")
+    (version "0.6.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/inline-c/"
+                           "inline-c-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0vbfrsqsi7mdziqsnj68bsqlwbqxxhvrmy9rv6w8z18d1m8w3n6h"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'create-Setup.hs
+           (lambda _
+             (with-output-to-file "Setup.hs"
+               (lambda _
+                 (display "\
+import Distribution.Simple
+main = defaultMain")))
+             #t)))))
+    (inputs
+     `(("ghc-ansi-wl-pprint" ,ghc-ansi-wl-pprint)
+       ("ghc-cryptohash" ,ghc-cryptohash)
+       ("ghc-hashable" ,ghc-hashable)
+       ("ghc-parsec" ,ghc-parsec)
+       ("ghc-parsers" ,ghc-parsers)
+       ("ghc-unordered-containers" ,ghc-unordered-containers)
+       ("ghc-vector" ,ghc-vector)))
+    (native-inputs
+     `(("ghc-quickcheck" ,ghc-quickcheck)
+       ("ghc-hspec" ,ghc-hspec)
+       ("ghc-raw-strings-qq" ,ghc-raw-strings-qq)
+       ("ghc-regex-posix" ,ghc-regex-posix)))
+    (home-page "http://hackage.haskell.org/package/inline-c")
+    (synopsis "Write Haskell source files including C code inline")
+    (description
+     "inline-c lets you seamlessly call C libraries and embed high-performance
+inline C code in Haskell modules.  Haskell and C can be freely intermixed in
+the same source file, and data passed to and from code in either language with
+minimal overhead.  No FFI required.")
+    (license license:expat)))
+
+(define-public ghc-weigh
+  (package
+    (name "ghc-weigh")
+    (version "0.0.12")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/weigh/"
+                           "weigh-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0zw2a997gxgdzqmd7j730kxgynzmjvvlkw84dajmfzf1v9pbij7x"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-split" ,ghc-split)
+       ("ghc-temporary" ,ghc-temporary)))
+    (home-page "https://github.com/fpco/weigh#readme")
+    (synopsis "Measure allocations of a Haskell functions/values")
+    (description "This package provides tools to measure the memory usage of a
+Haskell value or function.")
+    (license license:bsd-3)))
+
+(define-public ghc-linear
+  (package
+    (name "ghc-linear")
+    (version "1.20.8")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/linear/"
+                           "linear-" version ".tar.gz"))
+       (sha256
+        (base32
+         "046vkvxlb0s286qr55s0c6db0rlwbm1cmlmwhrrkqbkzhfcipgay"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-adjunctions" ,ghc-adjunctions)
+       ("ghc-base-orphans" ,ghc-base-orphans)
+       ("ghc-bytes" ,ghc-bytes)
+       ("ghc-cereal" ,ghc-cereal)
+       ("ghc-distributive" ,ghc-distributive)
+       ("ghc-hashable" ,ghc-hashable)
+       ("ghc-lens" ,ghc-lens)
+       ("ghc-reflection" ,ghc-reflection)
+       ("ghc-semigroups" ,ghc-semigroups)
+       ("ghc-semigroupoids" ,ghc-semigroupoids)
+       ("ghc-tagged" ,ghc-tagged)
+       ("ghc-transformers-compat" ,ghc-transformers-compat)
+       ("ghc-unordered-containers" ,ghc-unordered-containers)
+       ("ghc-vector" ,ghc-vector)
+       ("ghc-void" ,ghc-void)))
+    (native-inputs
+     `(("cabal-doctest" ,cabal-doctest)
+       ("ghc-doctest" ,ghc-doctest)
+       ("ghc-simple-reflect" ,ghc-simple-reflect)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+       ("ghc-hunit" ,ghc-hunit)))
+    (home-page "http://github.com/ekmett/linear/")
+    (synopsis "Linear algebra library for Haskell")
+    (description
+     "This package provides types and combinators for linear algebra on free
+vector spaces.")
+    (license license:bsd-3)))
+
+(define-public ghc-safe-exceptions
+  (package
+    (name "ghc-safe-exceptions")
+    (version "0.1.7.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "safe-exceptions/safe-exceptions-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "0sd0zfsm9pcll5bzzj523rbn45adjrnavdkz52hgmdjjgdcdrk8q"))))
+    (build-system haskell-build-system)
+    (arguments
+     '(#:cabal-revision
+       ("4" "0fid41gishzsyb47wzxhd5falandfirqcp760hcja81qjpfmqd32")))
+    (inputs `(("ghc-exceptions" ,ghc-exceptions)))
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)
+       ("ghc-void" ,ghc-void)
+       ("hspec-discover" ,hspec-discover)))
+    (home-page "https://github.com/fpco/safe-exceptions")
+    (synopsis "Safe, consistent, and easy exception handling")
+    (description "Runtime exceptions - as exposed in @code{base} by the
+@code{Control.Exception} module - have long been an intimidating part of the
+Haskell ecosystem.  This package is intended to overcome this.  It provides a
+safe and simple API on top of the existing exception handling machinery.  The
+API is equivalent to the underlying implementation in terms of power but
+encourages best practices to minimize the chances of getting the exception
+handling wrong.")
+    (license license:expat)))
+
+(define-public ghc-inline-c-cpp
+  (package
+    (name "ghc-inline-c-cpp")
+    (version "0.2.2.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/inline-c-cpp/"
+                           "inline-c-cpp-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1rk7fmpkmxw9hhwr8df29kadnf0ybnwj64ggdbnsdrpfyhnkisci"))))
+    (build-system haskell-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'create-Setup.hs
+           (lambda _
+             (with-output-to-file "Setup.hs"
+               (lambda _
+                 (display "\
+import Distribution.Simple
+main = defaultMain")))
+             #t)))))
+    (inputs
+     `(("ghc-inline-c" ,ghc-inline-c)
+       ("ghc-safe-exceptions" ,ghc-safe-exceptions)))
+    (native-inputs
+     `(("ghc-hspec" ,ghc-hspec)))
+    (home-page "https://hackage.haskell.org/package/inline-c-cpp")
+    (synopsis "Lets you embed C++ code into Haskell")
+    (description
+     "This package provides utilities to inline C++ code into Haskell using
+@code{inline-c}.")
+    (license license:expat)))
+
+(define-public ghc-bytestring-lexing
+  (package
+    (name "ghc-bytestring-lexing")
+    (version "0.5.0.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "bytestring-lexing/bytestring-lexing-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "0wrzniawhgpphc6yx1v972gyqxdbv0pizaz9bafahrshyb9svy81"))))
+    (build-system haskell-build-system)
+    (home-page "http://code.haskell.org/~wren/")
+    (synopsis "Parse and produce literals from strict or lazy bytestrings")
+    (description
+     "This package provides tools to parse and produce literals efficiently
+from strict or lazy bytestrings.")
+    (license license:bsd-2)))
+
+(define-public ghc-configurator
+  (package
+    (name "ghc-configurator")
+    (version "0.3.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "configurator/configurator-"
+                           version ".tar.gz"))
+       (sha256
+        (base32
+         "1d1iq1knwiq6ia5g64rw5hqm6dakz912qj13r89737rfcxmrkfbf"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-attoparsec" ,ghc-attoparsec)
+       ("ghc-hashable" ,ghc-hashable)
+       ("ghc-text" ,ghc-text)
+       ("ghc-unix-compat" ,ghc-unix-compat)
+       ("ghc-unordered-containers" ,ghc-unordered-containers)))
+    (native-inputs
+     `(("ghc-hunit" ,ghc-hunit)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)))
+    (home-page "http://github.com/bos/configurator")
+    (synopsis "Configuration management")
+    (description
+     "This package provides a configuration management library for programs
+and daemons.  The features include:
+
+@enumerate
+@item Automatic, dynamic reloading in response to modifications to
+  configuration files.
+@item A simple, but flexible, configuration language, supporting several of
+  the most commonly needed types of data, along with interpolation of strings
+  from the configuration or the system environment (e.g. @code{$(HOME)}).
+@item Subscription-based notification of changes to configuration properties.
+@item An @code{import} directive allows the configuration of a complex
+  application to be split across several smaller files, or common configuration
+  data to be shared across several applications.
+@end enumerate\n")
+    (license license:bsd-3)))
+
+(define-public ghc-file-embed
+  (package
+    (name "ghc-file-embed")
+    (version "0.0.10.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/file-embed/"
+                           "file-embed-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0lj164cnzqyd487mli91nnr7137a4h4qsasfwsnsh77sx12fpk9k"))))
+    (build-system haskell-build-system)
+    (home-page "https://github.com/snoyberg/file-embed")
+    (synopsis "Use Template Haskell to embed file contents directly")
+    (description
+     "This package allows you to use Template Haskell to read a file or all
+the files in a directory, and turn them into @code{(path, bytestring)} pairs
+embedded in your Haskell code.")
+    (license license:bsd-3)))
+
+(define-public ghc-safeio
+  (package
+    (name "ghc-safeio")
+    (version "0.0.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/safeio/"
+                           "safeio-" version ".tar.gz"))
+       (sha256
+        (base32
+         "04g3070cbjdqj0h9l9ii6470xcbn40xfv4fr89a8yvnkdim9nyfm"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-conduit" ,ghc-conduit)
+       ("ghc-conduit-combinators" ,ghc-conduit-combinators)
+       ("ghc-exceptions" ,ghc-exceptions)
+       ("ghc-resourcet" ,ghc-resourcet)))
+    (native-inputs
+     `(("ghc-hunit" ,ghc-hunit)
+       ("ghc-test-framework" ,ghc-test-framework)
+       ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)
+       ("ghc-test-framework-th" ,ghc-test-framework-th)))
+    (home-page "https://github.com/luispedro/safeio")
+    (synopsis "Write output to disk atomically")
+    (description
+     "This package implements utilities to perform atomic output so as to
+avoid the problem of partial intermediate files.")
+    (license license:expat)))
+
 ;;; haskell.scm ends here
diff --git a/gnu/packages/hexedit.scm b/gnu/packages/hexedit.scm
index 88dbfb234d..9aea8e8700 100644
--- a/gnu/packages/hexedit.scm
+++ b/gnu/packages/hexedit.scm
@@ -1,6 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2016 Kei Kebreau <kkebreau@posteo.net>
 ;;; Copyright © 2017 Gábor Boskovits <boskovits@gmail.com>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -21,25 +22,33 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (gnu packages)
+  #:use-module (gnu packages autotools)
   #:use-module (gnu packages compression)
   #:use-module (gnu packages ncurses)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module (guix build-system gnu))
 
 (define-public hexedit
   (package
     (name "hexedit")
-    (version "1.2.13")
+    (version "1.4.2")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "http://rigaux.org/"
-                                  name "-" version ".src.tgz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/pixel/hexedit.git")
+                    (commit version)))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "1mwdp1ikk64cqmagnrrps5jkn3li3n47maiqh2qc1xbp1ains4ka"))))
+                "1xsxa5mip892jkvz9jshj73y6c7j3mgp8y393ciihqlyf2nmfs67"))))
     (build-system gnu-build-system)
-    (arguments '(#:tests? #f)) ; no check target
-    (inputs `(("ncurses" ,ncurses)))
+    (arguments '(#:tests? #f))          ; no check target
+    (native-inputs
+     `(("autoconf" ,autoconf)
+       ("automake" ,automake)))
+    (inputs
+     `(("ncurses" ,ncurses)))
     (synopsis "View and edit files or devices in hexadecimal or ASCII")
     (description "hexedit shows a file both in ASCII and in hexadecimal.  The
 file can be a device as the file is read a piece at a time.  You can modify
diff --git a/gnu/packages/ibus.scm b/gnu/packages/ibus.scm
index 9f7e1f88b4..08fce5f6fb 100644
--- a/gnu/packages/ibus.scm
+++ b/gnu/packages/ibus.scm
@@ -44,7 +44,7 @@
 (define-public ibus
   (package
    (name "ibus")
-   (version "1.5.17")
+   (version "1.5.19")
    (source (origin
              (method url-fetch)
              (uri (string-append "https://github.com/ibus/ibus/"
@@ -52,22 +52,29 @@
                                  version "/ibus-" version ".tar.gz"))
              (sha256
               (base32
-               "06fj7lawww5d5w73pk249191lvmpz7shlxfxia74bjkpb42shiq3"))))
+               "0a94bnpm24581317hdnihwr4cniriml10p4ffgxg14xhvaccfrjb"))))
    (build-system glib-or-gtk-build-system)
    (arguments
     `(#:tests? #f  ; tests fail because there's no connection to dbus
-      #:configure-flags '("--disable-emoji-dict" ; cannot find emoji.json path
+      #:configure-flags `("--disable-emoji-dict" ; cannot find emoji.json path
+                          "--disable-python2"
+                          "--enable-python-library"
+                          ,(string-append "--with-ucd-dir="
+                                          (getcwd) "/ucd")
                           "--enable-wayland")
       #:make-flags
       (list "CC=gcc"
             (string-append "pyoverridesdir="
                            (assoc-ref %outputs "out")
-                           "/lib/python2.7/site-packages/gi/overrides/")
-            (string-append "py2overridesdir="
-                           (assoc-ref %outputs "out")
-                           "/lib/python2.7/site-packages/gi/overrides/"))
+                           "/lib/python3.6/site-packages/gi/overrides/"))
       #:phases
       (modify-phases %standard-phases
+        (add-after 'unpack 'prepare-ucd-dir
+          (lambda* (#:key inputs #:allow-other-keys)
+            (mkdir-p "../ucd")
+            (symlink (assoc-ref inputs "unicode-blocks") "../ucd/Blocks.txt")
+            (symlink (assoc-ref inputs "unicode-nameslist") "../ucd/NamesList.txt")
+            #t))
         (add-before 'configure 'disable-dconf-update
           (lambda _
             (substitute* "data/dconf/Makefile.in"
@@ -117,11 +124,23 @@
       ("wayland" ,wayland)
       ("xmodmap" ,xmodmap)
       ("iso-codes" ,iso-codes)
-      ("pygobject2" ,python2-pygobject)
-      ("python2" ,python-2)))
+      ("pygobject2" ,python-pygobject)
+      ("python" ,python)))
    (native-inputs
     `(("glib" ,glib "bin") ; for glib-genmarshal
       ("gobject-introspection" ,gobject-introspection) ; for g-ir-compiler
+      ("unicode-nameslist"
+       ,(origin
+          (method url-fetch)
+          (uri "https://www.unicode.org/Public/UNIDATA/NamesList.txt")
+          (sha256
+           (base32 "0yr2h0nfqhirfi3bxl33z6cc94qqshlpgi06c25xh9754irqsgv8"))))
+      ("unicode-blocks"
+       ,(origin
+          (method url-fetch)
+          (uri "https://www.unicode.org/Public/UNIDATA/Blocks.txt")
+          (sha256
+           (base32 "0lnh9iazikpr548bd7nkaq9r3vfljfvz0rg2462prac8qxk7ni8b"))))
       ("vala" ,vala)
       ("pkg-config" ,pkg-config)))
    (native-search-paths
diff --git a/gnu/packages/icu4c.scm b/gnu/packages/icu4c.scm
index cbba9aa42a..2d28107e81 100644
--- a/gnu/packages/icu4c.scm
+++ b/gnu/packages/icu4c.scm
@@ -55,6 +55,12 @@
                     (string-prefix? "mips" s)))
               '("--with-data-packaging=archive")
               '()))
+        ,@(if (string-prefix? "i686" (or (%current-target-system)
+                                         (%current-system)))
+              ;; FIXME: Some tests are failing on i686:
+              ;; <https://unicode-org.atlassian.net/browse/ICU-20080>.
+              '(#:tests? #f)
+              '())
       #:phases
       (modify-phases %standard-phases
         (add-after 'unpack 'chdir-to-source
diff --git a/gnu/packages/idris.scm b/gnu/packages/idris.scm
index 79f89d6f54..f80d6b3894 100644
--- a/gnu/packages/idris.scm
+++ b/gnu/packages/idris.scm
@@ -31,56 +31,10 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages))
 
-(define ghc-aeson-1.1.2.0
-  (package (inherit ghc-aeson)
-    (version "1.1.2.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "https://hackage.haskell.org/package/aeson/aeson-"
-             version
-             ".tar.gz"))
-       (sha256
-        (base32
-         "1zy5z8pzvh53qkjm0nm3f4rwqfqg3867ck8ncd6mrxpcyvxqqj1p"))))))
-
-(define ghc-trifecta-1.6.2.1
-  (package (inherit ghc-trifecta)
-    (version "1.6.2.1")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "https://hackage.haskell.org/package/trifecta/"
-             "trifecta-" version ".tar.gz"))
-       (sha256
-        (base32
-         "1rgv62dlmm4vkdymx5rw5jg3w8ifpzg1745rvs1m4kzdx16p5cxs"))))))
-
-;; ghc-cheapskate appeared too new. This follows LTS Haskell.
-(define ghc-cheapskate-0.1.0.5
-  (package
-    (inherit ghc-cheapskate)
-    (version "0.1.0.5")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append
-             "https://hackage.haskell.org/package/cheapskate/cheapskate-"
-             version
-             ".tar.gz"))
-       (sha256
-        (base32
-         "0cpsmfx5z2xykg71sv8j7pl8ga6pzyjnjdb9bxn00vcpqkzvfqvs"))))
-    (arguments
-     ;; LTS Haskell says data-default >=0.5 && <0.8
-     `(#:configure-flags (list "--allow-newer=data-default")))))
-
 (define-public idris
   (package
     (name "idris")
-    (version "1.0")
+    (version "1.3.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -88,12 +42,12 @@
                     "idris-" version "/idris-" version ".tar.gz"))
               (sha256
                (base32
-                "1srbz0cyvd0k1yqgbrwnfj94yg5y3z533q1kzac96z1h7v454s5h"))))
+                "1w5i2z88li4niykwc6yrgxgfp25ll6ih95cip0ri7d8i7ik03c48"))))
     (build-system haskell-build-system)
     (inputs
      `(("gmp" ,gmp)
        ("ncurses" ,ncurses)
-       ("ghc-aeson" ,ghc-aeson-1.1.2.0)
+       ("ghc-aeson" ,ghc-aeson)
        ("ghc-annotated-wl-pprint" ,ghc-annotated-wl-pprint)
        ("ghc-ansi-terminal" ,ghc-ansi-terminal)
        ("ghc-ansi-wl-pprint" ,ghc-ansi-wl-pprint)
@@ -101,12 +55,12 @@
        ("ghc-base64-bytestring" ,ghc-base64-bytestring)
        ("ghc-blaze-html" ,ghc-blaze-html)
        ("ghc-blaze-markup" ,ghc-blaze-markup)
-       ("ghc-cheapskate" ,ghc-cheapskate-0.1.0.5)
+       ("ghc-cheapskate" ,ghc-cheapskate)
        ("ghc-code-page" ,ghc-code-page)
        ("ghc-fingertree" ,ghc-fingertree)
        ("ghc-fsnotify" ,ghc-fsnotify)
        ("ghc-ieee754" ,ghc-ieee754)
-       ("ghc-mtl" ,ghc-mtl)
+       ("ghc-megaparsec" ,ghc-megaparsec)
        ("ghc-network" ,ghc-network)
        ("ghc-optparse-applicative" ,ghc-optparse-applicative)
        ("ghc-regex-tdfa" ,ghc-regex-tdfa)
@@ -114,7 +68,6 @@
        ("ghc-split" ,ghc-split)
        ("ghc-terminal-size" ,ghc-terminal-size)
        ("ghc-text" ,ghc-text)
-       ("ghc-trifecta" ,ghc-trifecta-1.6.2.1)
        ("ghc-uniplate" ,ghc-uniplate)
        ("ghc-unordered-containers" ,ghc-unordered-containers)
        ("ghc-utf8-string" ,ghc-utf8-string)
@@ -132,6 +85,11 @@
            (lambda _
              (setenv "CC" "gcc")
              #t))
+         (add-before 'configure 'update-constraints
+           (lambda _
+             (substitute* "idris.cabal"
+               (("aeson >= 0\\.6 && < 1\\.3")
+                "aeson >= 0.6 && < 1.4"))))
          (add-after 'install 'fix-libs-install-location
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((out (assoc-ref outputs "out"))
diff --git a/gnu/packages/image-processing.scm b/gnu/packages/image-processing.scm
index 8f80b75af4..0901dc429f 100644
--- a/gnu/packages/image-processing.scm
+++ b/gnu/packages/image-processing.scm
@@ -200,7 +200,7 @@ integrates with various databases on GUI toolkits such as Qt and Tk.")
 (define-public opencv
   (package
     (name "opencv")
-    (version "3.4.1")
+    (version "3.4.3")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/opencv/opencv/archive/"
@@ -208,7 +208,7 @@ integrates with various databases on GUI toolkits such as Qt and Tk.")
               (file-name (string-append name "-" version ".zip"))
               (sha256
                (base32
-                "1g8pvnlkzzp50amd89149hqsbvsc2hq3vk1d6a9fksdcx8ra9g94"))
+                "0pycx1pz8lj794q32mlalyc3ijqxwsyin65r26nh4yc0p71xiirp"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -345,7 +345,7 @@ integrates with various databases on GUI toolkits such as Qt and Tk.")
                                "opencv/opencv_extra/zip/" version))
            (file-name (string-append "opencv-extra-" version ".zip"))
            (sha256
-            (base32 "0wfh3pvfxqydf7hsccp50npcsg37sf6fqi6cd3zkc4qil9zhpbps"))))
+            (base32 "0yd1vidzbg6himxyh4yzivywijg8548kfmcn421khabnipm7l74y"))))
        ("opencv-contrib"
         ,(origin
            (method url-fetch)
@@ -353,7 +353,7 @@ integrates with various databases on GUI toolkits such as Qt and Tk.")
                                "opencv/opencv_contrib/zip/" version))
            (file-name (string-append "opencv-contrib-" version ".zip"))
            (sha256
-           (base32 "18zm0qmjcdvg90c33gzv0ws0xdaid1xpqzz2xa9l2x12qkr6zj3p"))))))
+           (base32 "0j0ci6ia1qwklp9hq07ypl0vkngj1wrgh6n98n657m5d0pyp4m0g"))))))
     (inputs `(("libjpeg" ,libjpeg)
               ("libpng" ,libpng)
               ("jasper" ,jasper)
diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index 89c15a5fe8..1113df1ca6 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -1347,16 +1347,18 @@ medical image data, e.g. magnetic resonance image (MRI) and functional MRI
 (define-public libiptcdata
   (package
     (name "libiptcdata")
-    (version "1.0.4")
+    (version "1.0.5")
     (source (origin
               (method url-fetch)
-              (uri (string-append "mirror://sourceforge/" name "/" name "/"
-                                  version "/" name "-" version ".tar.gz"))
+              (uri (string-append "https://github.com/ianw/libiptcdata"
+                                  "/releases/download/release_"
+                                  (string-join (string-split version #\.) "_")
+                                  "/" name "-" version ".tar.gz"))
               (sha256
                (base32
-                "03pfvkmmx762iydq0q207x2028d275pbdysfsgpmrr0ywy63pxkr"))))
+                "17m2bscc76r1bymjgb44fbbfrdsjfqyb2ivg9wchyllm8pgx1560"))))
     (build-system gnu-build-system)
-    (home-page "http://libiptcdata.sourceforge.net/")
+    (home-page "https://github.com/ianw/libiptcdata")
     (synopsis "IPTC metadata manipulation library")
     (description
      "Libiptcdata is a C library for manipulating the International Press
diff --git a/gnu/packages/imagemagick.scm b/gnu/packages/imagemagick.scm
index ec2ac08909..e29ec6255b 100644
--- a/gnu/packages/imagemagick.scm
+++ b/gnu/packages/imagemagick.scm
@@ -47,14 +47,14 @@
     ;; The 7 release series has an incompatible API, while the 6 series is still
     ;; maintained. Don't update to 7 until we've made sure that the ImageMagick
     ;; users are ready for the 7-series API.
-    (version "6.9.10-10")
+    (version "6.9.10-12")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://imagemagick/ImageMagick-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "0b0wwxm6mgaxq0i0hazxcpbk7xd5j1329r1vk9h07iz4v3k8i57h"))))
+               "0ri96yqihdk921k5qx23y2sbhraxbp2avdccxiy6m3srjkirym2l"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--with-frozenpaths" "--without-gcc-arch")
diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm
index d2f4c9d05b..f6d72edeea 100644
--- a/gnu/packages/java.scm
+++ b/gnu/packages/java.scm
@@ -1948,27 +1948,43 @@ designs.")
                      license:asl2.0
                      license:cpl1.0)))))
 
-(define-public javacc
+(define-public javacc-4
   (package
     (name "javacc")
-    (version "7.0.3")
+    (version "4.1")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/javacc/javacc/"
-                                  "archive/" version ".tar.gz"))
-              (file-name (string-append "javacc-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/javacc/javacc.git")
+                    (commit "release_41")))
+              (file-name (string-append "javacc-" version "-checkout"))
               (sha256
                (base32
-                "111xc9mnmc5a6qz6x3xbhqc07y1lg2b996ggzw0hrblg42zya9xf"))))
+                "07ysav7j8r1c6h8qxrgqk6lwdp74ly0ad1935lragxml0qqc3ka0"))
+              (modules '((guix build utils)))
+              ;; delete bundled jars
+              (snippet '(begin (delete-file-recursively "lib") #t))))
     (build-system ant-build-system)
+    ;; Tests fail with
+    ;; /tmp/guix-build-javacc-4.1.drv-0/source/test/javacodeLA/build.xml:60:
+    ;; JAVACODE failed
     (arguments
-     `(#:test-target "test"
+     `(#:tests? #f
        #:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'delete-bundled-libs
+         ;; Delete tests to avoid build failure (we don't run them anyway).
+         (add-after 'unpack 'delete-tests
            (lambda _
-             (delete-file-recursively "lib") #t))
-         (replace 'install (install-jars "target")))))
+             (for-each delete-file
+                       '("src/org/javacc/JavaCCTestCase.java"
+                         "src/org/javacc/parser/ExpansionTest.java"
+                         "src/org/javacc/parser/OptionsTest.java"
+                         "src/org/javacc/jjtree/JJTreeOptionsTest.java"))
+             (for-each delete-file-recursively
+                       '("src/org/javacc/parser/test"
+                         "src/org/javacc/jjdoc/test"))
+             #t))
+         (replace 'install (install-jars "bin/lib")))))
     (home-page "https://javacc.org/")
     (synopsis "Java parser generator")
     (description "Java Compiler Compiler (JavaCC) is the most popular parser
@@ -1980,29 +1996,34 @@ as tree building (via a tool called JJTree included with JavaCC), actions,
 debugging, etc.")
     (license license:bsd-3)))
 
-(define-public javacc-4
-  (package (inherit javacc)
-    (version "4.1")
+(define-public javacc
+  (package
+    (inherit javacc-4)
+    (version "7.0.3")
     (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://github.com/javacc/javacc.git")
-                    (commit "release_41")))
-              (file-name (string-append "javacc-" version "-checkout"))
+              (method url-fetch)
+              (uri (string-append "https://github.com/javacc/javacc/"
+                                  "archive/" version ".tar.gz"))
+              (file-name (string-append "javacc-" version ".tar.gz"))
               (sha256
                (base32
-                "07ysav7j8r1c6h8qxrgqk6lwdp74ly0ad1935lragxml0qqc3ka0"))))
-    ;; Tests fail with
-    ;; /tmp/guix-build-javacc-4.1.drv-0/source/test/javacodeLA/build.xml:60:
-    ;; JAVACODE failed
-    (arguments
-     `(#:tests? #f
+                "111xc9mnmc5a6qz6x3xbhqc07y1lg2b996ggzw0hrblg42zya9xf"))
+              (modules '((guix build utils)))
+              ;; delete bundled jars
+              (snippet '(begin (for-each delete-file-recursively
+                                         '("bootstrap" "lib"))
+                               #t))))
+    (arguments
+     `(#:make-flags ; bootstrap from javacc-4
+       (list (string-append "-Dbootstrap-jar="
+                            (assoc-ref %build-inputs "javacc")
+                            "/share/java/javacc.jar"))
+       #:test-target "test"
        #:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'delete-bundled-libs
-           (lambda _
-             (delete-file-recursively "lib") #t))
-         (replace 'install (install-jars "bin/lib")))))))
+         (replace 'install (install-jars "target")))))
+    (native-inputs
+     `(("javacc" ,javacc-4)))))
 
 ;; This is the last 3.x release of ECJ
 (define-public java-ecj-3
@@ -4288,6 +4309,85 @@ setter and getter method.")
 file filters and endian classes.")
     (license license:asl2.0)))
 
+(define-public java-commons-exec-1.1
+  (package
+    (name "java-commons-exec")
+    (version "1.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://apache/commons/exec/source/"
+                           "commons-exec-" version "-src.tar.gz"))
+       (sha256
+        (base32
+         "025dk8xgj10lxwwwqp0hng2rn7fr4vcirxzydqzx9k4dim667alk"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:test-target "test"
+       #:make-flags
+       (list (string-append "-Dmaven.junit.jar="
+                            (assoc-ref %build-inputs "java-junit")
+                            "/share/java/junit.jar"))
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'delete-network-tests
+           (lambda _
+             (delete-file "src/test/java/org/apache/commons/exec/DefaultExecutorTest.java")
+             (substitute* "src/test/java/org/apache/commons/exec/TestRunner.java"
+              (("suite\\.addTestSuite\\(DefaultExecutorTest\\.class\\);") ""))
+             #t))
+         ;; The "build" phase automatically tests.
+         (delete 'check)
+         (replace 'install (install-jars "target")))))
+    (native-inputs
+     `(("java-junit" ,java-junit)))
+    (home-page "http://commons.apache.org/proper/commons-exec/")
+    (synopsis "Common program execution related classes")
+    (description "Commons-Exec simplifies executing external processes.")
+    (license license:asl2.0)))
+
+(define-public java-commons-exec
+  (package
+    (inherit java-commons-exec-1.1)
+    (version "1.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://apache/commons/exec/source/"
+                           "commons-exec-" version "-src.tar.gz"))
+       (sha256
+        (base32
+         "17yb4h6f8l49c5iyyvda4z2nmw0bxrx857nrwmsr7mmpb7x441yv"))))
+    (arguments
+     `(#:test-target "test"
+       #:make-flags
+       (list (string-append "-Dmaven.junit.jar="
+                            (assoc-ref %build-inputs "java-junit")
+                            "/share/java/junit.jar")
+             "-Dmaven.compiler.source=1.7"
+             "-Dmaven.compiler.target=1.7")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'build 'delete-network-tests
+           (lambda* (#:key inputs #:allow-other-keys)
+             ;; This test hangs indefinitely.
+             (delete-file "src/test/java/org/apache/commons/exec/issues/Exec60Test.java")
+             (substitute* "src/test/java/org/apache/commons/exec/issues/Exec41Test.java"
+              (("ping -c 10 127.0.0.1") "sleep 10"))
+             (substitute* "src/test/java/org/apache/commons/exec/issues/Exec49Test.java"
+              (("/bin/ls") "ls"))
+             (call-with-output-file "src/test/scripts/ping.sh"
+               (lambda (port)
+                 (format port "#!~a/bin/sh\nsleep $1\n"
+                              (assoc-ref inputs "bash"))))
+             #t))
+         ;; The "build" phase automatically tests.
+         (delete 'check)
+         (replace 'install (install-jars "target")))))
+    (native-inputs
+     `(("java-junit" ,java-junit)
+       ("java-hamcrest-core" ,java-hamcrest-core)))))
+
 (define-public java-commons-lang
   (package
     (name "java-commons-lang")
@@ -7585,6 +7685,55 @@ configuration.")
     (description "This package is the jaxb annotations module for jackson.")
     (license license:asl2.0))); found on wiki.fasterxml.com/JacksonLicensing
 
+(define-public java-fasterxml-jackson-modules-base-mrbean
+  (package
+    (name "java-fasterxml-jackson-modules-base-mrbean")
+    (version "2.9.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/FasterXML/"
+                                  "jackson-modules-base/archive/"
+                                  "jackson-modules-base-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1wws95xi8sppp6b0k2vvjdjyynl20r1a4dwrhai08lzlria6blp5"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:jar-name "jackson-modules-base-mrbean.jar"
+       #:source-dir "mrbean/src/main/java"
+       #:test-dir "mrbean/src/test"
+       #:test-exclude
+       ;; Base class for tests
+       (list "**/BaseTest.java")
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'generate-PackageVersion.java
+           (lambda _
+             (let* ((out (string-append "mrbean/src/main/java/com/fasterxml/"
+                                        "jackson/module/mrbean/PackageVersion.java"))
+                    (in (string-append out ".in")))
+               (copy-file in out)
+               (substitute* out
+                 (("@package@") "com.fasterxml.jackson.module.mrbean")
+                 (("@projectversion@") ,version)
+                 (("@projectgroupid@") "com.fasterxml.jackson.module.mrbean")
+                 (("@projectartifactid@") "jackson-module-mrbean")))
+             #t)))))
+    (inputs
+     `(("java-asm" ,java-asm)
+       ("java-fasterxml-jackson-annotations"
+        ,java-fasterxml-jackson-annotations)
+       ("java-fasterxml-jackson-core" ,java-fasterxml-jackson-core)
+       ("java-fasterxml-jackson-databind" ,java-fasterxml-jackson-databind)))
+    (native-inputs
+     `(("java-junit" ,java-junit)))
+    (home-page "https://github.com/FasterXML/jackson-modules-base")
+    (synopsis "POJO type materialization for Java")
+    (description "This package implements POJO type materialization.
+Databinders can construct implementation classes for Java interfaces as part
+of deserialization.")
+    (license license:asl2.0)))
+
 (define-public java-snakeyaml
   (package
     (name "java-snakeyaml")
@@ -9506,6 +9655,39 @@ Candidate Recommendation, and will correctly serialize XML 1.1 documents if
 the DOM level 3 load/save API's are in use.")
     (license license:asl2.0)))
 
+(define-public java-jakarta-regexp
+  (package
+    (name "java-jakarta-regexp")
+    (version "1.5")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append
+              "https://archive.apache.org/dist/jakarta/regexp/jakarta-regexp-"
+              version ".tar.gz"))
+        (sha256
+         (base32
+          "0zg9rmyif48dck0cv6ynpxv23mmcsx265am1fnnxss7brgw0ms3r"))))
+    (build-system ant-build-system)
+    (arguments
+     `(#:test-target "test"
+       #:phases
+       (modify-phases %standard-phases
+          (replace 'install
+            (lambda* (#:key outputs #:allow-other-keys)
+              (let* ((out (assoc-ref outputs "out"))
+                     (out-share (string-append out "/share/java")))
+                (mkdir-p out-share)
+                (for-each (lambda (name)
+                            (install-file name out-share))
+                          (find-files "build" "^jakarta-regexp-.*\\.jar$"))
+                #t))))))
+    (home-page "https://attic.apache.org/projects/jakarta-regexp.html")
+    (synopsis "Regular expression parser generator for Java.")
+    (description "@code{jakarta-regexp} is an old regular expression parser
+generator for Java.")
+    (license license:asl2.0)))
+
 (define-public java-jline
   (package
     (name "java-jline")
diff --git a/gnu/packages/kde.scm b/gnu/packages/kde.scm
index aa5be6b515..c2164250e9 100644
--- a/gnu/packages/kde.scm
+++ b/gnu/packages/kde.scm
@@ -1,8 +1,9 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be>
-;;; Copyright © 2017 Mark Meyer <mark@ofosos.org>
+;;; Copyright © 2017, 2018 Mark Meyer <mark@ofosos.org>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -22,6 +23,7 @@
 (define-module (gnu packages kde)
   #:use-module (guix build-system cmake)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix utils)
@@ -47,8 +49,87 @@
   #:use-module (gnu packages tls)
   #:use-module (gnu packages qt)
   #:use-module (gnu packages version-control)
+  #:use-module (gnu packages video)
   #:use-module (gnu packages xorg))
 
+(define-public kdenlive
+  (let ((version "18.08.1"))
+    (package
+      (name "kdenlive")
+      (version version)
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "git://anongit.kde.org/kdenlive.git")
+               (commit (string-append "v" version))))
+         (file-name (string-append name "-" version "-checkout"))
+         (sha256
+          (base32
+           "0ifnaclsz7w08mc485i3j1kkcpd1m8q5qamckrfwc375ac13xf4g"))))
+      (build-system cmake-build-system)
+      (native-inputs
+       `(("extra-cmake-modules" ,extra-cmake-modules)
+         ("qttools" ,qttools)))
+      (propagated-inputs
+       `(("mlt" ,mlt)))
+      (inputs
+       `(("shared-mime-info" ,shared-mime-info)
+         ("frei0r-plugins" ,frei0r-plugins)
+         ("qtbase" ,qtbase)
+         ("qtscript" ,qtscript)
+         ("qtsvg" ,qtsvg)
+         ("kparts" ,kparts)
+         ("knotifications" ,knotifications)
+         ("karchive" ,karchive)
+         ("kdbusaddons" ,kdbusaddons)
+         ("kcrash" ,kcrash)
+         ("kguiaddons" ,kguiaddons)
+         ("knewstuff" ,knewstuff)
+         ("knotifyconfig" ,knotifyconfig)
+         ("kfilemetadata" ,kfilemetadata)
+         ("kdoctools" ,kdoctools)
+         ("kdeclarative", kdeclarative)
+         ("qtdeclarative", qtdeclarative)
+         ("qtquickcontrols", qtquickcontrols)
+         ("kiconthemes", kiconthemes)
+         ("qtgraphicaleffects" ,qtgraphicaleffects)
+         ("kplotting", kplotting)))
+      (arguments
+       `(#:phases
+         (modify-phases %standard-phases
+           (add-after 'install 'wrap-executable
+             (lambda* (#:key inputs outputs #:allow-other-keys)
+               (let* ((out (assoc-ref outputs "out"))
+                      (qtquickcontrols (assoc-ref inputs "qtquickcontrols"))
+                      (qtbase (assoc-ref inputs "qtbase"))
+                      (qtdeclarative (assoc-ref inputs "qtdeclarative"))
+                      (frei0r (assoc-ref inputs "frei0r-plugins"))
+                      (qml "/lib/qt5/qml"))
+                 (wrap-program (string-append out "/bin/kdenlive")
+                   `("QT_PLUGIN_PATH" ":" prefix
+                     ,(map (lambda (label)
+                             (string-append (assoc-ref inputs label)
+                                            "/lib/qt5/plugins/"))
+                           '("qtbase", "qtsvg")))
+                   `("FREI0R_PATH" ":" =
+                     (,(string-append frei0r "/lib/frei0r-1/")))
+                   `("QT_QPA_PLATFORM_PLUGIN_PATH" ":" =
+                     (,(string-append qtbase "/lib/qt5/plugins/platforms")))
+                   `("QML2_IMPORT_PATH" ":" prefix
+                     (,(string-append qtquickcontrols qml)
+                      ,(string-append qtdeclarative qml)))))
+               #t)))))
+      (home-page "https://kdenlive.org")
+      (synopsis "Non-linear video editor")
+      (description "Kdenlive is an acronym for KDE Non-Linear Video Editor.
+
+Non-linear video editing is much more powerful than beginner's (linear)
+editors, hence it requires a bit more organization before starting.  However,
+it is not reserved to specialists and can be used for small personal
+projects.")
+      (license license:gpl2+))))
+
 (define-public kdevelop
   (package
     (name "kdevelop")
@@ -236,7 +317,7 @@ plugins, as well as code to create plugins, or complete applications.")
 (define-public krita
   (package
     (name "krita")
-    (version "4.1.1")
+    (version "4.1.5")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -245,7 +326,7 @@ plugins, as well as code to create plugins, or complete applications.")
                     "/" name "-" version ".tar.gz"))
               (sha256
                (base32
-                "1qz9bjvnwa5gc2b0063i2p72jq6y1b6kgqdj39599acp7ws11asw"))))
+                "1by8p8ifdp03f05bhg8ygdd1j036anfpjjnzbx63l2fbmy9k6q10"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f
diff --git a/gnu/packages/kodi.scm b/gnu/packages/kodi.scm
index 62a971a0a8..21e7b12d3e 100644
--- a/gnu/packages/kodi.scm
+++ b/gnu/packages/kodi.scm
@@ -2,6 +2,7 @@
 ;;; Copyright © 2015 David Thompson <davet@gnu.org>
 ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2017 Oleg Pykhalov <go.wigust@gmail.com>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -92,22 +93,22 @@
       (arguments
        '(#:phases
          (modify-phases %standard-phases
-           (delete 'configure) ; no configure script
+           (delete 'configure)          ; no configure script
            ;; There's no build system here, so we have to do it ourselves.
            (replace 'build
              (lambda _
-               (and (zero? (system* "g++" "-c" "guid.cpp" "-o" "guid.o"
-                                    "-std=c++11" "-DGUID_LIBUUID"))
-                    (zero? (system* "ar" "rvs" "libcrossguid.a" "guid.o")))))
+               (invoke "g++" "-c" "guid.cpp" "-o" "guid.o"
+                       "-std=c++11" "-DGUID_LIBUUID")
+               (invoke "ar" "rvs" "libcrossguid.a" "guid.o")))
            (replace 'check
              (lambda _
-               (and (zero? (system* "g++" "-c" "test.cpp" "-o" "test.o"
-                                    "-std=c++11"))
-                    (zero? (system* "g++" "-c" "testmain.cpp" "-o" "testmain.o"
-                                    "-std=c++11"))
-                    (zero? (system* "g++" "test.o" "guid.o" "testmain.o"
-                                    "-o" "test" "-luuid"))
-                    (zero? (system* (string-append (getcwd) "/test"))))))
+               (invoke "g++" "-c" "test.cpp" "-o" "test.o"
+                       "-std=c++11")
+               (invoke "g++" "-c" "testmain.cpp" "-o" "testmain.o"
+                       "-std=c++11")
+               (invoke "g++" "test.o" "guid.o" "testmain.o"
+                       "-o" "test" "-luuid")
+               (invoke (string-append (getcwd) "/test"))))
            (replace 'install
              (lambda* (#:key outputs #:allow-other-keys)
                (let ((out (assoc-ref outputs "out")))
@@ -294,7 +295,7 @@ generator library for C++.")
                            "lib/cpluff")))
                (every (lambda (third-party)
                         (with-directory-excursion third-party
-                          (zero? (system* "autoreconf" "-vif"))))
+                          (invoke "autoreconf" "-vif")))
                       dirs))))
          (add-after 'bootstrap-bundled-software 'patch-stuff
            (lambda* (#:key inputs #:allow-other-keys)
@@ -316,6 +317,11 @@ generator library for C++.")
                 (string-append (assoc-ref inputs "tzdata")
                                "/share/zoneinfo")))
 
+             ;; Don't phone home to check for updates.¬
+             (substitute* "system/addon-manifest.xml"¬
+               (("<addon optional=\\\"true\\\">service.xbmc.versioncheck</addon>")
+                ""))
+
              ;; Let's disable some tests that are known not to work here.
              ;; Doing this later while in the cmake "../build" directory
              ;; is trickier.
@@ -335,7 +341,7 @@ generator library for C++.")
              #t))
          (add-before 'check 'build-kodi-test
            (lambda _
-             (zero? (system* "make" "kodi-test")))))))
+             (invoke "make" "kodi-test"))))))
     ;; TODO: Add dependencies for:
     ;; - nfs
     ;; - cec
diff --git a/gnu/packages/libevent.scm b/gnu/packages/libevent.scm
index bc7f6c670d..2de29707ca 100644
--- a/gnu/packages/libevent.scm
+++ b/gnu/packages/libevent.scm
@@ -152,6 +152,19 @@ resolution, asynchronous file system operations, and threading primitives.")
     ;; details.  Documentation is CC-BY 4.0 as of 1.12.0; see 'LICENSE-docs'.
     (license (list expat cc-by4.0))))
 
+;; This version is required for Node versions < 10.
+(define-public libuv-1.19
+  (package
+    (inherit libuv)
+    (version "1.19.2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://dist.libuv.org/dist/v" version
+                                  "/libuv-v" version ".tar.gz"))
+              (sha256
+               (base32
+                "1msk9ac1z69whww88ibrwjqkd1apdla6l77cm2fwy5kigq0z5g3w"))))))
+
 (define-public perl-anyevent
   (package
     (name "perl-anyevent")
diff --git a/gnu/packages/libreoffice.scm b/gnu/packages/libreoffice.scm
index 18edfcd35a..9571ba6e7d 100644
--- a/gnu/packages/libreoffice.scm
+++ b/gnu/packages/libreoffice.scm
@@ -28,6 +28,7 @@
 ;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
 
 (define-module (gnu packages libreoffice)
+  #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system trivial)
   #:use-module (guix download)
@@ -935,7 +936,7 @@ converting QuarkXPress file format.  It supports versions 3.1 to 4.1.")
 (define-public libreoffice
   (package
     (name "libreoffice")
-    (version "6.1.0.3")
+    (version "6.1.2.1")
     (source
      (origin
        (method url-fetch)
@@ -945,10 +946,10 @@ converting QuarkXPress file format.  It supports versions 3.1 to 4.1.")
          (version-prefix version 3) "/libreoffice-" version ".tar.xz"))
        (sha256
         (base32
-         "1n7b6abc0bp9x8lddx60w5br444wf62mdlkqmfk2zmkmiwkcvv2l"))
+         "149ziasibplihfxlzafzcm4737ns30hg9175967b43c81yv5f335"))
        (patches (search-patches "libreoffice-icu.patch"
                                 "libreoffice-glm.patch"))))
-    (build-system gnu-build-system)
+    (build-system glib-or-gtk-build-system)
     (native-inputs
      `(("bison" ,bison)
        ("cppunit" ,cppunit-1.14)
diff --git a/gnu/packages/license.scm b/gnu/packages/license.scm
index 44c7a1bb2a..e50ce831b1 100644
--- a/gnu/packages/license.scm
+++ b/gnu/packages/license.scm
@@ -61,7 +61,7 @@ Regexp::Pattern is a convention for organizing reusable regex patterns.")
 (define-public perl-string-copyright
   (package
     (name "perl-string-copyright")
-    (version "0.003005")
+    (version "0.003006")
     (source
      (origin
        (method url-fetch)
@@ -70,7 +70,7 @@ Regexp::Pattern is a convention for organizing reusable regex patterns.")
              version ".tar.gz"))
        (sha256
         (base32
-         "12c6x4c10gr46ryc3dpwgfi6wggmgy4a1ls2hwhcpdm3wvzy5619"))))
+         "0fzymv065nn3glwnw34nkyadzw2dh4rcz8avmki4zrnk4k45m01a"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-number-range" ,perl-number-range)))
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index 179c35e7ea..f058cc79a2 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -399,8 +399,8 @@ It has been modified to remove all non-free binary blobs.")
 ;; supports qemu "virt" machine and possibly a large number of ARM boards.
 ;; See : https://wiki.debian.org/DebianKernel/ARMMP.
 
-(define %linux-libre-version "4.18.8")
-(define %linux-libre-hash "163awpba1yd0x33xzj5dczimk4y96xc28syc4w2ad0qafgapng8l")
+(define %linux-libre-version "4.18.15")
+(define %linux-libre-hash "0v6xs85qn1iy2dj3m6s3cfnhbwb1mjy21d9lagjni8dg3jic26hf")
 
 (define %linux-libre-4.18-patches
   (list %boot-logo-patch
@@ -430,8 +430,8 @@ It has been modified to remove all non-free binary blobs.")
                     #:patches %linux-libre-4.18-patches
                     #:configuration-file kernel-config))
 
-(define %linux-libre-4.14-version "4.14.70")
-(define %linux-libre-4.14-hash "138v51m6k57wnvlf9c22dad0w819mfb8f95i6w99mlg69qpwdvag")
+(define %linux-libre-4.14-version "4.14.77")
+(define %linux-libre-4.14-hash "18y81rga2lhsk7bjckglxz52pvnzf103ar0z2zj611g37wyf83r5")
 
 (define-public linux-libre-4.14
   (make-linux-libre %linux-libre-4.14-version
@@ -440,14 +440,14 @@ It has been modified to remove all non-free binary blobs.")
                     #:configuration-file kernel-config))
 
 (define-public linux-libre-4.9
-  (make-linux-libre "4.9.127"
-                    "0q7h5gnl3ikic0pvwrxp78pz56yvijhz6s84gb92xywi1v3dd8mh"
+  (make-linux-libre "4.9.134"
+                    "0f5qif27k0mhc57d98arbfkq7zlvg0ra2gz6g5fasblyjz3j7w7h"
                     %intel-compatible-systems
                     #:configuration-file kernel-config))
 
 (define-public linux-libre-4.4
-  (make-linux-libre "4.4.156"
-                    "13j4jb4hifh3fah2ysy2425fakwqqdh2z23lf4i0frxa1xl974h2"
+  (make-linux-libre "4.4.161"
+                    "1q6bsndpjgw72mybhl5l8vrxs4mimg6821bjgi1pjkxbc7nd921b"
                     %intel-compatible-systems
                     #:configuration-file kernel-config))
 
@@ -962,6 +962,8 @@ Zerofree requires the file system to be unmounted or mounted read-only.")
              (substitute* "strace.c"
                (("/bin/sh") (which "sh")))
              #t)))
+       ;; Don't fail if the architecture doesn't support different personalities.
+       #:configure-flags '("--enable-mpers=check")
        ;; See <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=32459>.
        #:parallel-tests? #f))           ; undeterministic failures
     (native-inputs `(("perl" ,perl)))
@@ -2667,14 +2669,14 @@ isolation or root privileges.")
 (define-public hdparm
   (package
     (name "hdparm")
-    (version "9.55")
+    (version "9.56")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/" name "/" name "/"
                                   name "-" version ".tar.gz"))
               (sha256
                (base32
-                "1ivdvrzimaayiq03by8mcq0mhmdljndj06h012zkdpw34irnpixm"))))
+                "1np42qyhb503khvacnjcl3hb1dqly68gj0a1xip3j5qhbxlyvybg"))))
     (build-system gnu-build-system)
     (arguments
      `(#:make-flags (let ((out (assoc-ref %outputs "out")))
@@ -3626,14 +3628,14 @@ The following service daemons are also provided:
 (define-public perftest
   (package
     (name "perftest")
-    (version "4.2-0.8")
+    (version "4.4-0.4")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "https://github.com/linux-rdma/perftest/releases/download/V"
-                           version "/perftest-" version ".g0e24e67.tar.gz"))
+       (uri (string-append "https://github.com/linux-rdma/perftest/releases/download/v"
+                           version "/perftest-" version ".g0927198.tar.gz"))
        (sha256
-        (base32 "1r3pxn7cx3grb8myb4q1b0pk447pc06cifd0v7ym13xw00372dlx"))))
+        (base32 "11ix4h0rrmqqyi84y55a9xnkvwsmwq0sywr46hvxzm4rqz4ma8vq"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
@@ -3668,15 +3670,16 @@ The collection contains a set of bandwidth and latency benchmark such as:
 (define-public rng-tools
   (package
     (name "rng-tools")
-    (version "6.4")
+    (home-page "https://github.com/nhorman/rng-tools")
+    (version "6.6")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/nhorman/rng-tools/"
-                                  "archive/v" version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference (url home-page)
+                                  (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "005krksl8iz37l5p1nx8apl1yg7q78yrsb6inby31d2g5ck8nnwa"))))
+                "0c32sxfvngdjzfmxn5ngc5yxwi8ij3yl216nhzyz9r31qi3m14v7"))))
     (build-system gnu-build-system)
     (arguments
      `(;; Avoid using OpenSSL, curl, and libxml2, reducing the closure by 166 MiB.
@@ -3691,7 +3694,6 @@ The collection contains a set of bandwidth and latency benchmark such as:
     (description
      "Monitor a hardware random number generator, and supply entropy
 from that to the system kernel's @file{/dev/random} machinery.")
-    (home-page "https://sourceforge.net/projects/gkernel")
     ;; The source package is offered under the GPL2+, but the files
     ;; 'rngd_rdrand.c' and 'rdrand_asm.S' are only available under the GPL2.
     (license (list license:gpl2 license:gpl2+))))
@@ -3737,15 +3739,16 @@ such as frequency and voltage scaling.")
 (define-public haveged
   (package
     (name "haveged")
-    (version "1.9.2")
+    (version "1.9.4")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append "http://www.issihosts.com/haveged/haveged-"
-                           version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/jirka-h/haveged.git")
+             (commit version)))
+       (file-name (git-file-name name version))
        (sha256
-        (base32
-         "0w5ypz6451msckivjriwyw8djydlwffam7x23xh626s2vzdrlzgp"))))
+        (base32 "1hrwzjd4byq4fdrg8svww3d8x449k80jxxrjy9v6jvzhfv19rvxr"))))
     (build-system gnu-build-system)
     (home-page "http://www.issihosts.com/haveged")
     (synopsis "Entropy source for the Linux random number generator")
@@ -3754,11 +3757,16 @@ such as frequency and voltage scaling.")
 Linux's @file{/dev/random} and @file{/dev/urandom} devices.  The kernel's
 standard mechanisms for filling the entropy pool may not be sufficient for
 systems with high needs or limited user interaction, such as headless servers.
+
 @command{haveged} runs as a privileged daemon, harvesting randomness from the
 indirect effects of hardware events on hidden processor state using the HArdware
-Volatile Entropy Gathering and Expansion (HAVEGE) algorithm.  It tunes itself to
-its environment and provides the same built-in test suite for the output stream
-as used on certified hardware security devices.")
+Volatile Entropy Gathering and Expansion (@dfn{HAVEGE}) algorithm.  It tunes
+itself to its environment and provides the same built-in test suite for the
+output stream as used on certified hardware security devices.
+
+The quality of the randomness produced by this algorithm has not been proven.
+It is recommended to run it together with another entropy source like rngd, and
+not as a replacement for it.")
     (license (list (license:non-copyleft "file://nist/mconf.h")
                    (license:non-copyleft "file://nist/packtest.c")
                    license:public-domain        ; nist/dfft.c
@@ -4248,12 +4256,14 @@ Light is the successor of lightscript.")
                (setenv "TLP_SHCPL"
                        (string-append out "/share/bash-completion/completions"))
                (setenv "TLP_MAN" (string-append out "/share/man"))
-               (setenv "TLP_META" (string-append out "/share/metainfo")))))
+               (setenv "TLP_META" (string-append out "/share/metainfo"))
+               #t)))
          (delete 'check)                ; no tests
          (add-before 'install 'fix-installation
            (lambda _
              ;; Stop the Makefile from trying to create system directories.
-             (substitute* "Makefile" (("\\[ -f \\$\\(_CONF\\) \\]") "#"))))
+             (substitute* "Makefile" (("\\[ -f \\$\\(_CONF\\) \\]") "#"))
+             #t))
          (replace 'install
            (lambda _
              (invoke "make" "install-tlp" "install-man")
@@ -4287,7 +4297,8 @@ Light is the successor of lightscript.")
                                                        "pciutils"
                                                        "rfkill"
                                                        "wireless-tools"))))))
-                         bin-files)))))))
+                         bin-files)
+               #t))))))
     (home-page "http://linrunner.de/en/tlp/tlp.html")
     (synopsis "Power management tool for Linux")
     (description "TLP is a power management tool for Linux.  It comes with
@@ -4827,19 +4838,20 @@ interface to this kernel feature.")
 (define-public mbpfan
   (package
     (name "mbpfan")
-    (version "2.0.2")
+    (version "2.1.0")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append "https://github.com/dgraziotin/mbpfan/archive/v"
-                           version ".tar.gz"))
-       (file-name (string-append name "-" version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/dgraziotin/mbpfan.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
         (base32
-         "0wifsws9icki95hhfh4zw1hmk07ddmkcz9mg5a9jr7q2kkrk01cx"))))
+         "1gysq778rkl6dvvj9a1swxcl15wvz0bng5bn4nwq118cl8p8pask"))))
     (build-system gnu-build-system)
     (arguments
-     '(#:tests? #f ; no tests
+     '(#:tests? #f                      ; tests ask to be run as root
        #:make-flags (let ((out (assoc-ref %outputs "out")))
                       (list (string-append "DESTDIR=" out)
                             "CC=gcc"))
@@ -4850,7 +4862,7 @@ interface to this kernel feature.")
              (substitute* "Makefile"
                (("/usr") ""))
              #t))
-         (delete 'configure)))) ; There's no configure phase.
+         (delete 'configure))))         ; there's no configure phase
     (home-page "https://github.com/dgraziotin/mbpfan")
     (synopsis "Control fan speed on Macbooks")
     (description
diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm
index 82ba6eedf0..89ccdb720a 100644
--- a/gnu/packages/lisp.scm
+++ b/gnu/packages/lisp.scm
@@ -29,10 +29,6 @@
   #:use-module (gnu packages)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
-  #:use-module (gnu packages readline)
-  #:use-module (gnu packages texinfo)
-  #:use-module (gnu packages tex)
-  #:use-module (gnu packages m4)
   #:use-module (guix download)
   #:use-module (guix git-download)
   #:use-module (guix hg-download)
@@ -40,32 +36,38 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system asdf)
   #:use-module (guix build-system trivial)
+  #:use-module (gnu packages admin)
   #:use-module (gnu packages base)
+  #:use-module (gnu packages bdw-gc)
   #:use-module (gnu packages compression)
+  #:use-module (gnu packages ed)
   #:use-module (gnu packages fontutils)
+  #:use-module (gnu packages gcc)
+  #:use-module (gnu packages gettext)
+  #:use-module (gnu packages gl)
+  #:use-module (gnu packages glib)
+  #:use-module (gnu packages m4)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages multiprecision)
   #:use-module (gnu packages ncurses)
-  #:use-module (gnu packages bdw-gc)
-  #:use-module (gnu packages libffi)
   #:use-module (gnu packages libffcall)
-  #:use-module (gnu packages readline)
-  #:use-module (gnu packages sdl)
+  #:use-module (gnu packages libffi)
   #:use-module (gnu packages libsigsegv)
   #:use-module (gnu packages linux)
-  #:use-module (gnu packages admin)
-  #:use-module (gnu packages ed)
-  #:use-module (gnu packages gl)
-  #:use-module (gnu packages gcc)
-  #:use-module (gnu packages glib)
-  #:use-module (gnu packages gettext)
-  #:use-module (gnu packages m4)
+  #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages readline)
+  #:use-module (gnu packages sdl)
+  #:use-module (gnu packages tex)
+  #:use-module (gnu packages texinfo)
   #:use-module (gnu packages version-control)
   #:use-module (gnu packages xorg)
-  #:use-module (gnu packages perl)
+  #:use-module (gnu packages databases)
+  #:use-module (gnu packages gtk)
+  #:use-module (gnu packages webkit)
   #:use-module (ice-9 match)
-  #:use-module (srfi srfi-1))
+  #:use-module (srfi srfi-1)
+  #:use-module (srfi srfi-19))
 
 (define (asdf-substitutions lisp)
   ;; Prepend XDG_DATA_DIRS/LISP-bundle-systems to ASDF's
@@ -256,28 +258,31 @@ supporting ASDF, Sockets, Gray streams, MOP, and other useful components.")
 (define-public clisp
   (package
     (name "clisp")
-    (version "2.49-60")
+    (version "2.49-92")
     (source
      (origin
-       (method hg-fetch)
-       (uri (hg-reference
-             (url "http://hg.code.sf.net/p/clisp/clisp")
-             (changeset "clisp_2_49_60-2017-06-25")))
-       (file-name (string-append name "-" version "-checkout"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://gitlab.com/gnu-clisp/clisp")
+             (commit "clisp-2.49.92-2018-02-18")))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "0qjv3z274rbdmb941hy03hl63f4z7bmci234f8dyz4skgfr82d3i"))
-       (patches (search-patches "clisp-glibc-2.26.patch"
-                                "clisp-remove-failing-test.patch"))))
+        (base32 "0k2dmgl0miz3767iks4p0mvp6xw0ysyxhjpklyh11j010rmh6hqb"))
+       (patches (search-patches "clisp-remove-failing-test.patch"))))
     (build-system gnu-build-system)
     (inputs `(("libffcall" ,libffcall)
               ("ncurses" ,ncurses)
               ("readline" ,readline)
               ("libsigsegv" ,libsigsegv)))
     (arguments
-     '(#:configure-flags '("--enable-portability"
-                           "--with-dynamic-ffi"
-                           "--with-dynamic-modules"
-                           "--with-module=rawsock")
+     `(#:configure-flags '(,@(if (string-prefix? "armhf-linux"
+                                                 (or (%current-system)
+                                                     (%current-target-system)))
+                                 '("CFLAGS=-falign-functions=4")
+                                 '())
+                            "--with-dynamic-ffi"
+                            "--with-dynamic-modules"
+                            "--with-module=rawsock")
        #:build #f
        #:phases
        (modify-phases %standard-phases
@@ -288,6 +293,10 @@ supporting ASDF, Sockets, Gray streams, MOP, and other useful components.")
              ;; many places where our automatic patching misses them.  Therefore
              ;; we do the following, in this early (post-unpack) phase, to solve
              ;; the problem from its root.
+             (substitute* '("src/clisp-link.in"
+                            "src/unix.d"
+                            "src/makemake.in")
+               (("/bin/sh") (which "sh")))
              (substitute* (find-files "." "configure|Makefile")
                (("/bin/sh") "sh"))
              (substitute* '("src/clisp-link.in")
@@ -295,7 +304,7 @@ supporting ASDF, Sockets, Gray streams, MOP, and other useful components.")
              #t)))
        ;; Makefiles seem to have race conditions.
        #:parallel-build? #f))
-    (home-page "http://www.clisp.org/")
+    (home-page "https://clisp.sourceforge.io/")
     (synopsis "A Common Lisp implementation")
     (description
      "GNU CLISP is an implementation of ANSI Common Lisp.  Common Lisp is a
@@ -1522,3 +1531,2001 @@ based on a subset of MDL.  Confusion is a MDL interpreter that works just well
 enough to play the original mainframe Zork all the way through.")
       (home-page "http://www.russotto.net/git/mrussotto/confusion/src/master/src/README")
       (license license:gpl3+))))
+
+(define-public sbcl-cl-strings
+  (let ((revision "1")
+        (commit "c5c5cbafbf3e6181d03c354d66e41a4f063f00ae"))
+    (package
+      (name "sbcl-cl-strings")
+      (version (git-version "0.0.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/diogoalexandrefranco/cl-strings")
+               (commit commit)))
+         (sha256
+          (base32
+           "00754mfaqallj480lwd346nkfb6ra8pa8xcxcylf4baqn604zlmv"))
+         (file-name (string-append "cl-strings-" version "-checkout"))))
+      (build-system asdf-build-system/sbcl)
+      (synopsis "Portable, dependency-free set of utilities to manipulate strings in Common Lisp")
+      (description
+       "@command{cl-strings} is a small, portable, dependency-free set of
+utilities that make it even easier to manipulate text in Common Lisp.  It has
+100% test coverage and works at least on sbcl, ecl, ccl, abcl and clisp.")
+      (home-page "https://github.com/diogoalexandrefranco/cl-strings")
+      (license license:expat))))
+
+(define-public cl-strings
+  (sbcl-package->cl-source-package sbcl-cl-strings))
+
+(define-public ecl-cl-strings
+  (sbcl-package->ecl-package sbcl-cl-strings))
+
+(define-public sbcl-trivial-features
+  (package
+    (name "sbcl-trivial-features")
+    (version "0.8")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://github.com/trivial-features/trivial-features/archive/v"
+             version ".tar.gz"))
+       (sha256
+        (base32 "0db1awn6jyhcfhyfvpjvfziprmq85cigf19mwbvaprhblydsag3c"))
+       (file-name (string-append "trivial-features-" version ".tar.gz"))))
+    (build-system asdf-build-system/sbcl)
+    (arguments '(#:tests? #f))
+    (home-page "http://cliki.net/trivial-features")
+    (synopsis "Ensures consistency of @code{*FEATURES*} in Common Lisp")
+    (description "Trivial-features ensures that @code{*FEATURES*} is
+consistent across multiple Common Lisp implementations.")
+    (license license:expat)))
+
+(define-public cl-trivial-features
+  (sbcl-package->cl-source-package sbcl-trivial-features))
+
+(define-public ecl-trivial-features
+  (sbcl-package->ecl-package sbcl-trivial-features))
+
+(define-public sbcl-hu.dwim.asdf
+  (let ((commit "170b0e4fdde3df0bc537327e7600575daac9e141"))
+    (package
+      (name "sbcl-hu.dwim.asdf")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri
+          (git-reference
+           (url "https://github.com/nixeagle/hu.dwim.asdf")
+           (commit commit)))
+         (sha256
+          (base32 "10ax7p8y6vjqxzcq125p62kf68zi455a65ysgk0kl1f2v839c33v"))
+         (file-name (git-file-name "hu.dwim.asdf" version))))
+      (build-system asdf-build-system/sbcl)
+      (home-page "https://hub.darcs.net/hu.dwim/hu.dwim.asdf")
+      (synopsis "Extensions to ASDF")
+      (description "Various ASDF extensions such as attached test and
+documentation system, explicit development support, etc.")
+      (license license:public-domain))))
+
+(define-public cl-hu.dwim.asdf
+  (sbcl-package->cl-source-package sbcl-hu.dwim.asdf))
+
+(define-public ecl-hu.dwim.asdf
+  (sbcl-package->ecl-package sbcl-hu.dwim.asdf))
+
+(define-public sbcl-hu.dwim.stefil
+  (let ((commit "ab6d1aa8995878a1b66d745dfd0ba021090bbcf9"))
+    (package
+      (name "sbcl-hu.dwim.stefil")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri
+          (git-reference
+           (url "https://gitlab.common-lisp.net/xcvb/hu.dwim.stefil.git")
+           (commit commit)))
+         (sha256
+          (base32 "1d8yccw65zj3zh46cbi3x6nmn1dwdb76s9d0av035077mvyirqqp"))
+         (file-name (git-file-name "hu.dwim.stefil" version))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs
+       `(("asdf:cl-hu.dwim.asdf" ,sbcl-hu.dwim.asdf)))
+      (inputs
+       `(("sbcl-alexandria" ,sbcl-alexandria)))
+      (home-page "https://hub.darcs.net/hu.dwim/hu.dwim.stefil")
+      (synopsis "Simple test framework")
+      (description "Stefil is a simple test framework for Common Lisp,
+with a focus on interactive development.")
+      (license license:public-domain))))
+
+(define-public cl-hu.dwim.stefil
+  (sbcl-package->cl-source-package sbcl-hu.dwim.stefil))
+
+(define-public ecl-hu.dwim.stefil
+  (sbcl-package->ecl-package sbcl-hu.dwim.stefil))
+
+(define-public sbcl-babel
+  (package
+    (name "sbcl-babel")
+    (version "0.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://github.com/cl-babel/babel/archive/v"
+             version ".tar.gz"))
+       (sha256
+        (base32 "189kgbmslh36xx0d2i1g6a7mcvjryvjzkdlnhilqy5xs7hkyqirq"))
+       (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system asdf-build-system/sbcl)
+    (native-inputs
+     `(("tests:cl-hu.dwim.stefil" ,sbcl-hu.dwim.stefil)))
+    (inputs
+     `(("sbcl-alexandria" ,sbcl-alexandria)
+       ("sbcl-trivial-features" ,sbcl-trivial-features)))
+    (home-page "https://common-lisp.net/project/babel/")
+    (synopsis "Charset encoding and decoding library")
+    (description "Babel is a charset encoding and decoding library, not unlike
+GNU libiconv, but completely written in Common Lisp.")
+    (license license:expat)))
+
+(define-public cl-babel
+  (sbcl-package->cl-source-package sbcl-babel))
+
+(define-public ecl-babel
+  (sbcl-package->ecl-package sbcl-babel))
+
+(define-public sbcl-cl-yacc
+  (package
+    (name "sbcl-cl-yacc")
+    (version "0.3")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/jech/cl-yacc")
+             (commit (string-append "cl-yacc-" version))))
+       (sha256
+        (base32
+         "16946pzf8vvadnyfayvj8rbh4zjzw90h0azz2qk1mxrvhh5wklib"))
+       (file-name (string-append "cl-yacc-" version "-checkout"))))
+    (build-system asdf-build-system/sbcl)
+    (arguments
+     `(#:asd-file "yacc.asd"
+       #:asd-system-name "yacc"))
+    (synopsis "LALR(1) parser generator for Common Lisp, similar in spirit to Yacc")
+    (description
+     "CL-Yacc is a LALR(1) parser generator for Common Lisp, similar in spirit
+to AT&T Yacc, Berkeley Yacc, GNU Bison, Zebu, lalr.cl or lalr.scm.
+
+CL-Yacc uses the algorithm due to Aho and Ullman, which is the one also used
+by AT&T Yacc, Berkeley Yacc and Zebu.  It does not use the faster algorithm due
+to DeRemer and Pennello, which is used by Bison and lalr.scm (not lalr.cl).")
+    (home-page "https://www.irif.fr/~jch//software/cl-yacc/")
+    (license license:expat)))
+
+(define-public cl-yacc
+  (sbcl-package->cl-source-package sbcl-cl-yacc))
+
+(define-public ecl-cl-yacc
+  (sbcl-package->ecl-package sbcl-cl-yacc))
+
+(define-public sbcl-jpl-util
+  (let ((commit "0311ed374e19a49d43318064d729fe3abd9a3b62"))
+    (package
+      (name "sbcl-jpl-util")
+      (version "20151005")
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               ;; Quicklisp uses this fork.
+               (url "https://github.com/hawkir/cl-jpl-util")
+               (commit commit)))
+         (file-name
+          (git-file-name "jpl-util" version))
+         (sha256
+          (base32
+           "0nc0rk9n8grkg3045xsw34whmcmddn2sfrxki4268g7kpgz0d2yz"))))
+      (build-system asdf-build-system/sbcl)
+      (synopsis "Collection of Common Lisp utility functions and macros")
+      (description
+       "@command{cl-jpl-util} is a collection of Common Lisp utility functions
+and macros, primarily for software projects written in CL by the author.")
+      (home-page "https://www.thoughtcrime.us/software/cl-jpl-util/")
+      (license license:isc))))
+
+(define-public cl-jpl-util
+  (sbcl-package->cl-source-package sbcl-jpl-util))
+
+(define-public ecl-jpl-util
+  (sbcl-package->ecl-package sbcl-jpl-util))
+
+(define-public sbcl-jpl-queues
+  (package
+    (name "sbcl-jpl-queues")
+    (version "0.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "http://www.thoughtcrime.us/software/jpl-queues/jpl-queues-"
+             version
+             ".tar.gz"))
+       (sha256
+        (base32
+         "1wvvv7j117h9a42qaj1g4fh4mji28xqs7s60rn6d11gk9jl76h96"))))
+    (build-system asdf-build-system/sbcl)
+    (inputs
+     `(("jpl-util" ,sbcl-jpl-util)
+       ("bordeaux-threads" ,sbcl-bordeaux-threads)))
+    (arguments
+     ;; Tests seem to be broken.
+     `(#:tests? #f))
+    (synopsis "Common Lisp library implementing a few different kinds of queues")
+    (description
+     "A Common Lisp library implementing a few different kinds of queues:
+
+@itemize
+@item Bounded and unbounded FIFO queues.
+@item Lossy bounded FIFO queues that drop elements when full.
+@item Unbounded random-order queues that use less memory than unbounded FIFO queues.
+@end itemize
+
+Additionally, a synchronization wrapper is provided to make any queue
+conforming to the @command{jpl-queues} API thread-safe for lightweight
+multithreading applications.  (See Calispel for a more sophisticated CL
+multithreaded message-passing library with timeouts and alternation among
+several blockable channels.)")
+    (home-page "https://www.thoughtcrime.us/software/jpl-queues/")
+    (license license:isc)))
+
+(define-public cl-jpl-queues
+  (sbcl-package->cl-source-package sbcl-jpl-queues))
+
+(define-public ecl-jpl-queues
+  (sbcl-package->ecl-package sbcl-jpl-queues))
+
+(define-public sbcl-eos
+  (let ((commit "b0faca83781ead9a588661e37bd47f90362ccd94"))
+    (package
+      (name "sbcl-eos")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/adlai/Eos")
+               (commit commit)))
+         (sha256
+          (base32
+           "1bq8cfg087iyxmxi1mwgx5cfgy3b8ydrf81xljcis8qbgb2vszph"))
+         (file-name (git-file-name "eos" version))))
+      (build-system asdf-build-system/sbcl)
+      (synopsis "Unit Testing for Common Lisp")
+      (description
+       "Eos was a unit testing library for Common Lisp.
+It began as a fork of FiveAM; however, FiveAM development has continued, while
+that of Eos has not.  Thus, Eos is now deprecated in favor of FiveAM.")
+      (home-page "https://github.com/adlai/Eos")
+      (license license:expat))))
+
+(define-public cl-eos
+  (sbcl-package->cl-source-package sbcl-eos))
+
+(define-public ecl-eos
+  (sbcl-package->ecl-package sbcl-eos))
+
+(define-public sbcl-esrap
+  (let ((commit "133be8b05c2aae48696fe5b739eea2fa573fa48d"))
+    (package
+      (name "sbcl-esrap")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/nikodemus/esrap")
+               (commit commit)))
+         (sha256
+          (base32
+           "02d5clihsdryhf7pix8c5di2571fdsffh75d40fkzhws90r5mksl"))
+         (file-name (git-file-name "esrap" version))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs
+       `(("eos" ,sbcl-eos)))            ;For testing only.
+      (inputs
+       `(("alexandria" ,sbcl-alexandria)))
+      (synopsis "Common Lisp packrat parser")
+      (description
+       "A packrat parser for Common Lisp.
+In addition to regular Packrat / Parsing Grammar / TDPL features ESRAP supports:
+
+@itemize
+@item dynamic redefinition of nonterminals
+@item inline grammars
+@item semantic predicates
+@item introspective facilities (describing grammars, tracing, setting breaks)
+@end itemize\n")
+      (home-page "https://nikodemus.github.io/esrap/")
+      (license license:expat))))
+
+(define-public cl-esrap
+  (sbcl-package->cl-source-package sbcl-esrap))
+
+(define-public ecl-esrap
+  (sbcl-package->ecl-package sbcl-esrap))
+
+(define-public sbcl-split-sequence
+  (package
+    (name "sbcl-split-sequence")
+    (version "1.4.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/sharplispers/split-sequence")
+             (commit (string-append "v" version))))
+       (sha256
+        (base32
+         "0c3zp6b7fmmp93sfhq112ind4zkld49ycw68z409xpnz3gc0wpf0"))
+       (file-name (git-file-name "split-sequence" version))))
+    (build-system asdf-build-system/sbcl)
+    (arguments
+     ;; TODO: Tests seem to be broken.
+     ;; https://github.com/sharplispers/split-sequence/issues/8
+     `(#:tests? #f))
+    (synopsis "Member of the Common Lisp Utilities family of programs")
+    (description
+     "Splits sequence into a list of subsequences delimited by objects
+satisfying the test.")
+    (home-page "https://cliki.net/split-sequence")
+    (license license:expat)))
+
+(define-public cl-split-sequence
+  (sbcl-package->cl-source-package sbcl-split-sequence))
+
+(define-public ecl-split-sequence
+  (sbcl-package->ecl-package sbcl-split-sequence))
+
+(define-public sbcl-html-encode
+  (package
+    (name "sbcl-html-encode")
+    (version "1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "http://beta.quicklisp.org/archive/html-encode/2010-10-06/html-encode-"
+             version ".tgz"))
+       (sha256
+        (base32
+         "06mf8wn95yf5swhmzk4vp0xr4ylfl33dgfknkabbkd8n6jns8gcf"))
+       (file-name (string-append "colorize" version "-checkout"))))
+    (build-system asdf-build-system/sbcl)
+    (synopsis "Common Lisp library for encoding text in various web-savvy encodings")
+    (description
+     "A library for encoding text in various web-savvy encodings.")
+    (home-page "http://quickdocs.org/html-encode/")
+    (license license:expat)))
+
+(define-public cl-html-encode
+  (sbcl-package->cl-source-package sbcl-html-encode))
+
+(define-public ecl-html-encode
+  (sbcl-package->ecl-package sbcl-html-encode))
+
+(define-public sbcl-colorize
+  (let ((commit "ea676b584e0899cec82f21a9e6871172fe3c0eb5"))
+    (package
+      (name "sbcl-colorize")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/kingcons/colorize")
+               (commit commit)))
+         (sha256
+          (base32
+           "1pdg4kiaczmr3ivffhirp7m3lbr1q27rn7dhaay0vwghmi31zcw9"))
+         (file-name (git-file-name "colorize" version))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("alexandria" ,sbcl-alexandria)
+         ("split-sequence" ,sbcl-split-sequence)
+         ("html-encode" ,sbcl-html-encode)))
+      (synopsis "Common Lisp for syntax highlighting")
+      (description
+       "@command{colorize} is a Lisp library for syntax highlighting
+supporting the following languages: Common Lisp, Emacs Lisp, Scheme, Clojure,
+C, C++, Java, Python, Erlang, Haskell, Objective-C, Diff, Webkit.")
+      (home-page "https://github.com/kingcons/colorize")
+      ;; TODO: Missing license?
+      (license license:expat))))
+
+(define-public cl-colorize
+  (sbcl-package->cl-source-package sbcl-colorize))
+
+(define-public ecl-colorize
+  (sbcl-package->ecl-package sbcl-colorize))
+
+(define-public sbcl-3bmd
+  (let ((commit "192ea13435b605a96ef607df51317056914cabbd"))
+    (package
+      (name "sbcl-3bmd")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/3b/3bmd")
+               (commit commit)))
+         (sha256
+          (base32
+           "1rgv3gi7wf963ikmmpk132wgn0icddf226gq3bmcnk1fr3v9gf2f"))
+         (file-name (git-file-name "3bmd" version))))
+      (build-system asdf-build-system/sbcl)
+      (arguments
+       ;; FIXME: We need to specify the name because the build-system thinks
+       ;; "3" is a version marker.
+       `(#:asd-system-name "3bmd"))
+      (inputs
+       `(("esrap" ,sbcl-esrap)
+         ("split-sequence" ,sbcl-split-sequence)))
+      (synopsis "Markdown processor in Command Lisp using esrap parser")
+      (description
+       "Common Lisp Markdown -> HTML converter, using @command{esrap} for
+parsing, and grammar based on @command{peg-markdown}.")
+      (home-page "https://github.com/3b/3bmd")
+      (license license:expat))))
+
+(define-public cl-3bmd
+  (sbcl-package->cl-source-package sbcl-3bmd))
+
+(define-public ecl-3bmd
+  (sbcl-package->ecl-package sbcl-3bmd))
+
+(define-public sbcl-3bmd-ext-code-blocks
+  (let ((commit "192ea13435b605a96ef607df51317056914cabbd"))
+    (package
+      (inherit sbcl-3bmd)
+      (name "sbcl-3bmd-ext-code-blocks")
+      (arguments
+       `(#:asd-system-name "3bmd-ext-code-blocks"
+         #:asd-file "3bmd-ext-code-blocks.asd"))
+      (inputs
+       `(("3bmd" ,sbcl-3bmd)
+         ("colorize" ,sbcl-colorize)))
+      (synopsis "3bmd extension which adds support for GitHub-style fenced
+code blocks")
+      (description
+       "3bmd extension which adds support for GitHub-style fenced code blocks,
+with @command{colorize} support."))))
+
+(define-public cl-3bmd-ext-code-blocks
+  (sbcl-package->cl-source-package sbcl-3bmd-ext-code-blocks))
+
+(define-public ecl-3bmd-ext-code-blocks
+  (sbcl-package->ecl-package sbcl-3bmd-ext-code-blocks))
+
+(define-public sbcl-cl-fad
+  (package
+    (name "sbcl-cl-fad")
+    (version "0.7.5")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/edicl/cl-fad/")
+             (commit (string-append "v" version))))
+       (sha256
+        (base32
+         "1l1qmk9z57q84bz5r04sxsksggsnd7dgkxlybzh9imz6ma7sm52m"))
+       (file-name (string-append "cl-fad" version "-checkout"))))
+    (build-system asdf-build-system/sbcl)
+    (inputs
+     `(("bordeaux-threads" ,sbcl-bordeaux-threads)))
+    (synopsis "Portable pathname library for Common Lisp")
+    (description
+     "CL-FAD (for \"Files and Directories\") is a thin layer atop Common
+Lisp's standard pathname functions.  It is intended to provide some
+unification between current CL implementations on Windows, OS X, Linux, and
+Unix.  Most of the code was written by Peter Seibel for his book Practical
+Common Lisp.")
+    (home-page "https://edicl.github.io/cl-fad/")
+    (license license:bsd-2)))
+
+(define-public cl-fad
+  (sbcl-package->cl-source-package sbcl-cl-fad))
+
+(define-public ecl-cl-fad
+  (sbcl-package->ecl-package sbcl-cl-fad))
+
+(define-public sbcl-rt
+  (package
+    (name "sbcl-rt")
+    (version "1990.12.19")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "http://beta.quicklisp.org/archive/rt/2010-10-06/rt-"
+                           "20101006-git" ".tgz"))
+       (sha256
+        (base32
+         "1jncar0xwkqk8yrc2dln389ivvgzs7ijdhhs3zpfyi5d21f0qa1v"))))
+    (build-system asdf-build-system/sbcl)
+    (synopsis "MIT Regression Tester")
+    (description
+     "RT provides a framework for writing regression test suites.")
+    (home-page "https://github.com/sharplispers/nibbles")
+    (license license:unlicense)))
+
+(define-public cl-rt
+  (sbcl-package->cl-source-package sbcl-rt))
+
+(define-public ecl-rt
+  (sbcl-package->ecl-package sbcl-rt))
+
+(define-public sbcl-nibbles
+  (package
+    (name "sbcl-nibbles")
+    (version "0.14")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/sharplispers/nibbles/")
+             (commit (string-append "v" version))))
+       (sha256
+        (base32
+         "1v7qfgpvdr6nz7v63dj69d26dis0kff3rd8xamr1llfdvza2pm8f"))
+       (file-name (git-file-name "nibbles" version))))
+    (build-system asdf-build-system/sbcl)
+    (native-inputs
+     ;; Tests only.
+     `(("rt" ,sbcl-rt)))
+    (synopsis "Common Lisp library for accessing octet-addressed blocks of data")
+    (description
+     "When dealing with network protocols and file formats, it's common to
+have to read or write 16-, 32-, or 64-bit datatypes in signed or unsigned
+flavors.  Common Lisp sort of supports this by specifying :element-type for
+streams, but that facility is underspecified and there's nothing similar for
+read/write from octet vectors.  What most people wind up doing is rolling their
+own small facility for their particular needs and calling it a day.
+
+This library attempts to be comprehensive and centralize such
+facilities.  Functions to read 16-, 32-, and 64-bit quantities from octet
+vectors in signed or unsigned flavors are provided; these functions are also
+SETFable.  Since it's sometimes desirable to read/write directly from streams,
+functions for doing so are also provided.  On some implementations,
+reading/writing IEEE singles/doubles (i.e. single-float and double-float) will
+also be supported.")
+    (home-page "https://github.com/sharplispers/nibbles")
+    (license license:bsd-3)))
+
+(define-public cl-nibbles
+  (sbcl-package->cl-source-package sbcl-nibbles))
+
+(define-public ecl-nibbles
+  (sbcl-package->ecl-package sbcl-nibbles))
+
+(define-public sbcl-ironclad
+  (package
+    (name "sbcl-ironclad")
+    (version "0.42")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/sharplispers/ironclad/")
+             (commit (string-append "v" version))))
+       (sha256
+        (base32
+         "1wjcb9vpybxjrmch7f7s78a5abxmnknbd4fl49dl5lz8a3fc8vf0"))
+       (file-name (string-append "ironblad" version "-checkout"))))
+    (build-system asdf-build-system/sbcl)
+    (native-inputs
+     ;; Tests only.
+     `(("rt" ,sbcl-rt)))
+    (inputs
+     `(("flexi-streams" ,sbcl-flexi-streams)
+       ("nibbles" ,sbcl-nibbles)))
+    (synopsis "Cryptographic toolkit written in Common Lisp")
+    (description
+     "Ironclad is a cryptography library written entirely in Common Lisp.
+It includes support for several popular ciphers, digests, MACs and public key
+cryptography algorithms.  For several implementations that support Gray
+streams, support is included for convenient stream wrappers.")
+    (home-page "https://github.com/sharplispers/ironclad")
+    (license license:bsd-3)))
+
+(define-public cl-ironclad
+  (sbcl-package->cl-source-package sbcl-ironclad))
+
+(define-public ecl-ironclad
+  (sbcl-package->ecl-package sbcl-ironclad))
+
+(define-public sbcl-named-readtables
+  (let ((commit "4dfb89fa1af6b305b6492b8af042f5190c11e9fc")
+        (revision "1"))
+    (package
+      (name "sbcl-named-readtables")
+      (version (string-append "0.9-" revision "." (string-take commit 7)))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/melisgl/named-readtables.git")
+               (commit commit)))
+         (sha256
+          (base32 "083kgh5462iqbb4px6kq8s7sggvpvkm36hx4qi9rnaw53b6ilqkk"))
+         (file-name (git-file-name "named-readtables" version))))
+      (build-system asdf-build-system/sbcl)
+      (arguments
+       ;; Tests seem to be broken.
+       `(#:tests? #f))
+      (home-page "https://github.com/melisgl/named-readtables/")
+      (synopsis "Library that creates a namespace for named readtables")
+      (description "Named readtables is a library that creates a namespace for
+named readtables, which is akin to package namespacing in Common Lisp.")
+      (license license:bsd-3))))
+
+(define-public cl-named-readtables
+  (sbcl-package->cl-source-package sbcl-named-readtables))
+
+(define-public ecl-named-readtables
+  (sbcl-package->ecl-package sbcl-named-readtables))
+
+(define-public sbcl-pythonic-string-reader
+  (let ((commit "47a70ba1e32362e03dad6ef8e6f36180b560f86a"))
+    (package
+      (name "sbcl-pythonic-string-reader")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/smithzvk/pythonic-string-reader/")
+               (commit commit)))
+         (sha256
+          (base32 "1b5iryqw8xsh36swckmz8rrngmc39k92si33fgy5pml3n9l5rq3j"))
+         (file-name (git-file-name "pythonic-string-reader" version))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("named-readtables" ,sbcl-named-readtables)))
+      (home-page "https://github.com/smithzvk/pythonic-string-reader")
+      (synopsis "Read table modification inspired by Python's three quote strings")
+      (description "This piece of code sets up some reader macros that make it
+simpler to input string literals which contain backslashes and double quotes
+This is very useful for writing complicated docstrings and, as it turns out,
+writing code that contains string literals that contain code themselves.")
+      (license license:bsd-3))))
+
+(define-public cl-pythonic-string-reader
+  (sbcl-package->cl-source-package sbcl-pythonic-string-reader))
+
+(define-public ecl-pythonic-string-reader
+  (sbcl-package->ecl-package sbcl-pythonic-string-reader))
+
+(define-public sbcl-slime-swank
+  (package
+    (name "sbcl-slime-swank")
+    (version "2.22")
+    (source
+     (origin
+       (file-name (string-append name "-" version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             ;; (url "https://github.com/slime/slime/")
+             ;; (commit "841f61467c03dea9f38ff9d5af0e21a8aa29e8f7")
+             ;; REVIEW: Do we need sionescu's patch to package SWANK?
+             (url "https://github.com/sionescu/slime/")
+             ;; (commit "swank-asdf")
+             (commit "2f7c3fcb3ac7d50d844d5c6ca0e89b52a45e1d3a")))
+       (sha256
+        (base32
+         ;; "065bc4y6iskazdfwlhgcjlzg9bi2hyjbhmyjw3461506pgkj08vi"
+         "0pkmg94wn4ii1zhlrncn44mdc5i6c5v0i9gbldx4dwl2yy7ibz5c"))
+       (modules '((guix build utils)))
+       (snippet
+        '(begin
+           (substitute* "contrib/swank-listener-hooks.lisp"
+             ((":compile-toplevel :load-toplevel ") ""))
+           (substitute* "contrib/swank-presentations.lisp"
+             ((":compile-toplevel :load-toplevel ") ""))
+           (substitute* "swank.asd"
+             ((":file \"packages\".*" all)
+              (string-append all "(:file \"swank-loader-asdf\")\n")))
+           (substitute* "swank-loader-asdf.lisp"
+             ((":common-lisp" all) (string-append all " #:asdf")))
+           #t))))
+    (build-system asdf-build-system/sbcl)
+    (arguments
+     `(#:asd-file "swank.asd"
+       #:asd-system-name "swank"))
+    (home-page "https://github.com/slime/slime")
+    (synopsis "Common Lisp Swank server")
+    (description
+     "This is only useful if you want to start a Swank server in a Lisp
+processes that doesn't run under Emacs.  Lisp processes created by
+@command{M-x slime} automatically start the server.")
+    (license (list license:gpl2+ license:public-domain))))
+
+(define-public sbcl-mgl-pax
+  (let ((commit "818448418d6b9de74620f606f5b23033c6082769"))
+    (package
+      (name "sbcl-mgl-pax")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/melisgl/mgl-pax")
+               (commit commit)))
+         (sha256
+          (base32
+           "1p97zfkh130bdxqqxwaw2j9psv58751wakx7czbfpq410lg7dd7i"))
+         (file-name (git-file-name "mgl-pax" version))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("3bmd" ,sbcl-3bmd)
+         ("3bmd-ext-code-blocks" ,sbcl-3bmd-ext-code-blocks)
+         ("babel" ,sbcl-babel)
+         ("cl-fad" ,sbcl-cl-fad)
+         ("ironclad" ,sbcl-ironclad)
+         ("named-readtables" ,sbcl-named-readtables)
+         ("pythonic-string-reader" ,sbcl-pythonic-string-reader)
+         ("swank" ,sbcl-slime-swank)))
+      (synopsis "Exploratory programming environment and documentation generator")
+      (description
+       "PAX provides an extremely poor man's Explorable Programming
+environment.  Narrative primarily lives in so called sections that mix markdown
+docstrings with references to functions, variables, etc, all of which should
+probably have their own docstrings.
+
+The primary focus is on making code easily explorable by using SLIME's
+@command{M-.} (@command{slime-edit-definition}).  See how to enable some
+fanciness in Emacs Integration.  Generating documentation from sections and all
+the referenced items in Markdown or HTML format is also implemented.
+
+With the simplistic tools provided, one may accomplish similar effects as with
+Literate Programming, but documentation is generated from code, not vice versa
+and there is no support for chunking yet.  Code is first, code must look
+pretty, documentation is code.")
+      (home-page "http://quotenil.com/")
+      (license license:expat))))
+
+(define-public cl-mgl-pax
+  (sbcl-package->cl-source-package sbcl-mgl-pax))
+
+(define-public ecl-mgl-pax
+  (sbcl-package->ecl-package sbcl-mgl-pax))
+
+(define-public sbcl-lisp-unit
+  (let ((commit "89653a232626b67400bf9a941f9b367da38d3815"))
+    (package
+      (name "sbcl-lisp-unit")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/OdonataResearchLLC/lisp-unit")
+               (commit commit)))
+         (sha256
+          (base32
+           "0p6gdmgr7p383nvd66c9y9fp2bjk4jx1lpa5p09g43hr9y9pp9ry"))
+         (file-name (git-file-name "lisp-unit" version))))
+      (build-system asdf-build-system/sbcl)
+      (synopsis "Common Lisp Test framework inspired by JUnit to be simple of use")
+      (description
+       "@command{lisp-unit} is a Common Lisp library that supports unit
+testing.  It is an extension of the library written by Chris Riesbeck.")
+      (home-page "https://github.com/OdonataResearchLLC/lisp-unit")
+      (license license:expat))))
+
+(define-public cl-lisp-unit
+  (sbcl-package->cl-source-package sbcl-lisp-unit))
+
+(define-public ecl-lisp-unit
+  (sbcl-package->ecl-package sbcl-lisp-unit))
+
+(define-public sbcl-anaphora
+  (package
+    (name "sbcl-anaphora")
+    (version "0.9.6")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/tokenrove/anaphora")
+             (commit version)))
+       (sha256
+        (base32
+         "19wfrk3asimznkli0x2rfy637hwpdgqyvwj3vhq9x7vjvyf5vv6x"))
+       (file-name (git-file-name "anaphora" version))))
+    (build-system asdf-build-system/sbcl)
+    (native-inputs
+     `(("rt" ,sbcl-rt)))
+    (synopsis "The anaphoric macro collection from Hell")
+    (description
+     "Anaphora is the anaphoric macro collection from Hell: it includes many
+new fiends in addition to old friends like @command{aif} and
+@command{awhen}.")
+    (home-page "https://github.com/tokenrove/anaphora")
+    (license license:public-domain)))
+
+(define-public cl-anaphora
+  (sbcl-package->cl-source-package sbcl-anaphora))
+
+(define-public ecl-anaphora
+  (sbcl-package->ecl-package sbcl-anaphora))
+
+(define-public sbcl-lift
+  (let ((commit "7d49a66c62759535624037826891152223d4206c"))
+    (package
+      (name "sbcl-lift")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/gwkkwg/lift")
+               (commit commit)))
+         (sha256
+          (base32
+           "127v5avpz1i4m0lkaxqrq8hrl69rdazqaxf6s8awf0nd7wj2g4dp"))
+         (file-name (git-file-name "lift" version))))
+      (build-system asdf-build-system/sbcl)
+      (arguments
+       ;; The tests require a debugger, but we run with the debugger disabled.
+       '(#:tests? #f
+         #:phases
+         (modify-phases %standard-phases
+           ;; Do this to ensure the 'reset-gzip-timestamps phase works.
+           (add-after 'unpack 'make-gzips-writeable
+             (lambda _
+               (for-each (lambda (file)
+                           (chmod file #o755))
+                         (find-files "." "\\.gz$")))))))
+      (synopsis "LIsp Framework for Testing")
+      (description
+       "The LIsp Framework for Testing (LIFT) is a unit and system test tool for LISP.
+Though inspired by SUnit and JUnit, it's built with Lisp in mind.  In LIFT,
+testcases are organized into hierarchical testsuites each of which can have
+its own fixture.  When run, a testcase can succeed, fail, or error.  LIFT
+supports randomized testing, benchmarking, profiling, and reporting.")
+      (home-page "https://github.com/gwkkwg/lift")
+      (license license:x11-style))))
+
+(define-public cl-lift
+  (sbcl-package->cl-source-package sbcl-lift))
+
+(define-public ecl-lift
+  (sbcl-package->ecl-package sbcl-lift))
+
+(define-public sbcl-let-plus
+  (let ((commit "5f14af61d501ecead02ec6b5a5c810efc0c9fdbb"))
+    (package
+      (name "sbcl-let-plus")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/sharplispers/let-plus")
+               (commit commit)))
+         (sha256
+          (base32
+           "0i050ca2iys9f5mb7dgqgqdxfnc3b0rnjdwv95sqd490vkiwrsaj"))
+         (file-name (git-file-name "let-plus" version))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("alexandria" ,sbcl-alexandria)
+         ("anaphora" ,sbcl-anaphora)))
+      (native-inputs
+       `(("lift" ,sbcl-lift)))
+      (synopsis "Destructuring extension of let*")
+      (description
+       "This library implements the let+ macro, which is a dectructuring
+extension of let*.  It features:
+
+@itemize
+@item Clean, consistent syntax and small implementation (less than 300 LOC,
+not counting tests)
+@item Placeholder macros allow editor hints and syntax highlighting
+@item @command{&ign} for ignored values (in forms where that makes sense)
+@item Very easy to extend
+@end itemize\n")
+      (home-page "https://github.com/sharplispers/let-plus")
+      (license license:boost1.0))))
+
+(define-public cl-let-plus
+  (sbcl-package->cl-source-package sbcl-let-plus))
+
+(define-public ecl-let-plus
+  (sbcl-package->ecl-package sbcl-let-plus))
+
+(define-public sbcl-cl-colors
+  (let ((commit "827410584553f5c717eec6182343b7605f707f75"))
+    (package
+      (name "sbcl-cl-colors")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/tpapp/cl-colors")
+               (commit commit)))
+         (sha256
+          (base32
+           "0l446lday4hybsm9bq3jli97fvv8jb1d33abg79vbylpwjmf3y9a"))
+         (file-name (git-file-name "cl-colors" version))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("alexandria" ,sbcl-alexandria)
+         ("let-plus" ,sbcl-let-plus)))
+      (synopsis "Simple color library for Common Lisp")
+      (description
+       "This is a very simple color library for Common Lisp, providing
+
+@itemize
+@item Types for representing colors in HSV and RGB spaces.
+@item Simple conversion functions between the above types (and also
+hexadecimal representation for RGB).
+@item Some predefined colors (currently X11 color names – of course the
+library does not depend on X11).Because color in your terminal is nice.
+@end itemize
+
+This library is no longer supported by its author.")
+      (home-page "https://github.com/tpapp/cl-colors")
+      (license license:boost1.0))))
+
+(define-public cl-colors
+  (sbcl-package->cl-source-package sbcl-cl-colors))
+
+(define-public ecl-cl-colors
+  (sbcl-package->ecl-package sbcl-cl-colors))
+
+(define-public sbcl-cl-ansi-text
+  (let ((commit "53badf7878f27f22f2d4a2a43e6df458e43acbe9"))
+    (package
+      (name "sbcl-cl-ansi-text")
+      (version (git-version "1.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/pnathan/cl-ansi-text")
+               (commit commit)))
+         (sha256
+          (base32
+           "11i27n0dbz5lmygiw65zzr8lx0rac6b6yysqranphn31wls6ja3v"))
+         (file-name (git-file-name "cl-ansi-text" version))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("alexandria" ,sbcl-alexandria)
+         ("cl-colors" ,sbcl-cl-colors)))
+      (native-inputs
+       `(("fiveam" ,sbcl-fiveam)))
+      (synopsis "ANSI terminal color implementation for Common Lisp")
+      (description
+       "@command{cl-ansi-text} provides utilities which enable printing to an
+ANSI terminal with colored text.  It provides the macro @command{with-color}
+which causes everything printed in the body to be displayed with the provided
+color.  It further provides functions which will print the argument with the
+named color.")
+      (home-page "https://github.com/pnathan/cl-ansi-text")
+      ;; REVIEW: The actual license is LLGPL.  Should we add it to Guix?
+      (license license:lgpl3+))))
+
+(define-public cl-ansi-text
+  (sbcl-package->cl-source-package sbcl-cl-ansi-text))
+
+(define-public ecl-cl-ansi-text
+  (sbcl-package->ecl-package sbcl-cl-ansi-text))
+
+(define-public sbcl-prove-asdf
+  (let ((commit "4f9122bd393e63c5c70c1fba23070622317cfaa0"))
+    (package
+      (name "sbcl-prove-asdf")
+      (version (git-version "1.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/fukamachi/prove")
+               (commit commit)))
+         (sha256
+          (base32
+           "07sbfw459z8bbjvx1qlmfa8qk2mvbjnnzi2mi0x72blaj8bkl4vc"))
+         (file-name (git-file-name "prove" version))))
+      (build-system asdf-build-system/sbcl)
+      (arguments
+       `(#:asd-file "prove-asdf.asd"))
+      (synopsis "Test requirement for the Common Lisp 'prove' library")
+      (description
+       "Test requirement for the Common Lisp @command{prove} library.")
+      (home-page "https://github.com/fukamachi/prove")
+      (license license:expat))))
+
+(define-public cl-prove-asdf
+  (sbcl-package->cl-source-package sbcl-prove-asdf))
+
+(define-public ecl-prove-asdf
+  (sbcl-package->ecl-package sbcl-prove-asdf))
+
+(define-public sbcl-prove
+  (package
+    (inherit sbcl-prove-asdf)
+    (name "sbcl-prove")
+    (inputs
+     `(("alexandria" ,sbcl-alexandria)
+       ("cl-ppcre" ,sbcl-cl-ppcre)
+       ("cl-ansi-text" ,sbcl-cl-ansi-text)))
+    (native-inputs
+     `(("prove-asdf" ,sbcl-prove-asdf)))
+    (arguments
+     `(#:asd-file "prove.asd"))
+    (synopsis "Yet another unit testing framework for Common Lisp")
+    (description
+     "This project was originally called @command{cl-test-more}.
+@command{prove} is yet another unit testing framework for Common Lisp.  The
+advantages of @command{prove} are:
+
+@itemize
+@item Various simple functions for testing and informative error messages
+@item ASDF integration
+@item Extensible test reporters
+@item Colorizes the report if it's available (note for SLIME)
+@item Reports test durations
+@end itemize\n")))
+
+(define-public cl-prove
+  (sbcl-package->cl-source-package sbcl-prove))
+
+(define-public ecl-prove
+  (sbcl-package->ecl-package sbcl-prove))
+
+(define-public sbcl-proc-parse
+  (let ((commit "ac3636834d561bdc2686c956dbd82494537285fd"))
+    (package
+      (name "sbcl-proc-parse")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/fukamachi/proc-parse")
+               (commit commit)))
+         (sha256
+          (base32
+           "06rnl0h4cx6xv2wj3jczmmcxqn2703inmmvg1s4npbghmijsybfh"))
+         (file-name (git-file-name "proc-parse" version))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("alexandria" ,sbcl-alexandria)
+         ("babel" ,sbcl-babel)))
+      (native-inputs
+       `(("prove" ,sbcl-prove)
+         ("prove-asdf" ,sbcl-prove-asdf)))
+      (arguments
+       ;; TODO: Tests don't find "proc-parse-test", why?
+       `(#:tests? #f))
+      (synopsis "Procedural vector parser")
+      (description
+       "This is a string/octets parser library for Common Lisp with speed and
+readability in mind.  Unlike other libraries, the code is not a
+pattern-matching-like, but a char-by-char procedural parser.")
+      (home-page "https://github.com/fukamachi/proc-parse")
+      (license license:bsd-2))))
+
+(define-public cl-proc-parse
+  (sbcl-package->cl-source-package sbcl-proc-parse))
+
+(define-public ecl-proc-parse
+  (sbcl-package->ecl-package sbcl-proc-parse))
+
+(define-public sbcl-parse-float
+  (let ((commit "2aae569f2a4b2eb3bfb5401a959425dcf151b09c"))
+    (package
+      (name "sbcl-parse-float")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/soemraws/parse-float")
+               (commit commit)))
+         (sha256
+          (base32
+           "08xw8cchhmqcc0byng69m3f5a2izc9y2290jzz2k0qrbibp1fdk7"))
+         (file-name (git-file-name "proc-parse" version))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("alexandria" ,sbcl-alexandria)
+         ("babel" ,sbcl-babel)))
+      (native-inputs
+       `(("prove" ,sbcl-prove)
+         ("prove-asdf" ,sbcl-prove-asdf)))
+      (arguments
+       ;; TODO: Tests don't find "proc-parse-test", why?
+       `(#:tests? #f))
+      (synopsis "Parse a floating point value from a string in Common Lisp")
+      (description
+       "This package exports the following function to parse floating-point
+values from a string in Common Lisp.")
+      (home-page "https://github.com/soemraws/parse-float")
+      ;; TODO: Missing license?
+      (license license:public-domain))))
+
+(define-public cl-parse-float
+  (sbcl-package->cl-source-package sbcl-parse-float))
+
+(define-public ecl-parse-float
+  (sbcl-package->ecl-package sbcl-parse-float))
+
+(define-public sbcl-ascii-strings
+  (let ((revision "1")
+        (changeset "5048480a61243e6f1b02884012c8f25cdbee6d97"))
+    (package
+      (name "sbcl-ascii-strings")
+      (version (string-append "0-" revision "." (string-take changeset 7)))
+      (source
+       (origin
+         (method hg-fetch)
+         (uri (hg-reference
+               (url "https://bitbucket.org/vityok/cl-string-match/")
+               (changeset changeset)))
+         (sha256
+          (base32
+           "01wn5qx562w43ssy92xlfgv79w7p0nv0wbl76mpmba131n9ziq2y"))
+         (file-name (git-file-name "cl-string-match" version))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("alexandria" ,sbcl-alexandria)
+         ("babel" ,sbcl-babel)))
+      (arguments
+       `(#:asd-file "ascii-strings.asd"))
+      (synopsis "Operations on ASCII strings")
+      (description
+       "Operations on ASCII strings.  Essentially this can be any kind of
+single-byte encoded strings.")
+      (home-page "https://bitbucket.org/vityok/cl-string-match/")
+      (license license:bsd-3))))
+
+(define-public cl-ascii-strings
+  (sbcl-package->cl-source-package sbcl-ascii-strings))
+
+(define-public ecl-ascii-strings
+  (sbcl-package->ecl-package sbcl-ascii-strings))
+
+(define-public sbcl-simple-scanf
+  (package
+    (inherit sbcl-ascii-strings)
+    (name "sbcl-simple-scanf")
+    (inputs
+     `(("alexandria" ,sbcl-alexandria)
+       ("iterate" ,sbcl-iterate)
+       ("proc-parse" ,sbcl-proc-parse)
+       ("parse-float" ,sbcl-parse-float)))
+    (arguments
+     `(#:asd-file "simple-scanf.asd"))
+    (synopsis "Simple scanf-like functionality implementation")
+    (description
+     "A simple scanf-like functionality implementation.")))
+
+(define-public cl-simple-scanf
+  (sbcl-package->cl-source-package sbcl-simple-scanf))
+
+(define-public ecl-simple-scanf
+  (sbcl-package->ecl-package sbcl-simple-scanf))
+
+(define-public sbcl-cl-string-match
+  (package
+    (inherit sbcl-ascii-strings)
+    (name "sbcl-cl-string-match")
+    (inputs
+     `(("alexandria" ,sbcl-alexandria)
+       ("ascii-strings" ,sbcl-ascii-strings)
+       ("yacc" ,sbcl-cl-yacc)
+       ("jpl-util" ,sbcl-jpl-util)
+       ("jpl-queues" ,sbcl-jpl-queues)
+       ("mgl-pax" ,sbcl-mgl-pax)
+       ("iterate" ,sbcl-iterate)))
+    ;; TODO: Tests are not evaluated properly.
+    (native-inputs
+     ;; For testing:
+     `(("lisp-unit" ,sbcl-lisp-unit)
+       ("simple-scanf" ,sbcl-simple-scanf)))
+    (arguments
+     `(#:tests? #f
+       #:asd-file "cl-string-match.asd"))
+    (synopsis "Portable, dependency-free set of utilities to manipulate strings in Common Lisp")
+    (description
+     "@command{cl-strings} is a small, portable, dependency-free set of
+utilities that make it even easier to manipulate text in Common Lisp.  It has
+100% test coverage and works at least on sbcl, ecl, ccl, abcl and clisp.")))
+
+(define-public cl-string-match
+  (sbcl-package->cl-source-package sbcl-cl-string-match))
+
+(define-public ecl-cl-string-match
+  (sbcl-package->ecl-package sbcl-cl-string-match))
+
+(define-public sbcl-ptester
+  (package
+    (name "sbcl-ptester")
+    (version "20160929")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "http://beta.quicklisp.org/archive/ptester/"
+                           (date->string (string->date version "~Y~m~d") "~Y-~m-~d")
+                           "/ptester-"
+                           version
+                           "-git.tgz"))
+       (sha256
+        (base32
+         "04rlq1zljhxc65pm31bah3sq3as24l0sdivz440s79qlnnyh13hz"))))
+    (build-system asdf-build-system/sbcl)
+    (home-page "http://quickdocs.org/ptester/")
+    (synopsis "Portable test harness package")
+    (description
+     "@command{ptester} is a portable testing framework based on Franz's
+tester module.")
+    (license license:lgpl3+)))
+
+(define-public cl-ptester
+  (sbcl-package->cl-source-package sbcl-ptester))
+
+(define-public ecl-ptester
+  (sbcl-package->ecl-package sbcl-ptester))
+
+(define-public sbcl-puri
+  (package
+    (name "sbcl-puri")
+    (version "20180228")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "http://beta.quicklisp.org/archive/puri/"
+                           (date->string (string->date version "~Y~m~d") "~Y-~m-~d")
+                           "/puri-"
+                           version
+                           "-git.tgz"))
+       (sha256
+        (base32
+         "1s4r5adrjy5asry45xbcbklxhdjydvf6n55z897nvyw33bigrnbz"))))
+    (build-system asdf-build-system/sbcl)
+    ;; REVIEW: Webiste down?
+    (native-inputs
+     `(("ptester" ,sbcl-ptester)))
+    (home-page "http://files.kpe.io/puri/")
+    (synopsis "Portable URI Library")
+    (description
+     "This is portable Universal Resource Identifier library for Common Lisp
+programs.  It parses URI according to the RFC 2396 specification")
+    (license license:lgpl3+)))
+
+(define-public cl-puri
+  (sbcl-package->cl-source-package sbcl-puri))
+
+(define-public ecl-puri
+  (sbcl-package->ecl-package sbcl-puri))
+
+(define-public sbcl-queues
+  (let ((commit "47d4da65e9ea20953b74aeeab7e89a831b66bc94"))
+    (package
+      (name "sbcl-queues")
+      (version (git-version "0.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/oconnore/queues")
+               (commit commit)))
+         (file-name (git-file-name "queues" version))
+         (sha256
+          (base32
+           "0wdhfnzi4v6d97pggzj2aw55si94w4327br94jrmyvwf351wqjvv"))))
+      (build-system asdf-build-system/sbcl)
+      (home-page "https://github.com/oconnore/queues")
+      (synopsis "Common Lisp queue library")
+      (description
+       "This is a simple queue library for Common Lisp with features such as
+non-consing thread safe queues and fibonacci priority queues.")
+      (license license:expat))))
+
+(define-public cl-queues
+  (sbcl-package->cl-source-package sbcl-queues))
+
+(define-public ecl-queues
+  (sbcl-package->ecl-package sbcl-queues))
+
+(define-public sbcl-queues.simple-queue
+  (package
+    (inherit sbcl-queues)
+    (name "sbcl-queues.simple-queue")
+    (inputs
+     `(("sbcl-queues" ,sbcl-queues)))
+    (arguments
+     `(#:asd-file "queues.simple-queue.asd"))
+    (synopsis "Simple queue implementation")
+    (description
+     "This is a simple queue library for Common Lisp with features such as
+non-consing thread safe queues and fibonacci priority queues.")
+    (license license:expat)))
+
+(define-public cl-queues.simple-queue
+  (sbcl-package->cl-source-package sbcl-queues.simple-queue))
+
+(define-public ecl-queues.simple-queue
+  (sbcl-package->ecl-package sbcl-queues.simple-queue))
+
+(define-public sbcl-queues.simple-cqueue
+  (package
+    (inherit sbcl-queues)
+    (name "sbcl-queues.simple-cqueue")
+    (inputs
+     `(("sbcl-queues" ,sbcl-queues)
+       ("sbcl-queues.simple-queue" ,sbcl-queues.simple-queue)
+       ("bordeaux-threads" ,sbcl-bordeaux-threads)))
+    (arguments
+     `(#:asd-file "queues.simple-cqueue.asd"))
+    (synopsis "Thread safe queue implementation")
+    (description
+     "This is a simple queue library for Common Lisp with features such as
+non-consing thread safe queues and fibonacci priority queues.")
+    (license license:expat)))
+
+(define-public cl-queues.simple-cqueue
+  (sbcl-package->cl-source-package sbcl-queues.simple-cqueue))
+
+(define-public ecl-queues.simple-cqueue
+  (sbcl-package->ecl-package sbcl-queues.simple-cqueue))
+
+(define-public sbcl-queues.priority-queue
+  (package
+    (inherit sbcl-queues)
+    (name "sbcl-queues.priority-queue")
+    (inputs
+     `(("sbcl-queues" ,sbcl-queues)))
+    (arguments
+     `(#:asd-file "queues.priority-queue.asd"))
+    (synopsis "Priority queue (Fibonacci) implementation")
+    (description
+     "This is a simple queue library for Common Lisp with features such as
+non-consing thread safe queues and fibonacci priority queues.")
+    (license license:expat)))
+
+(define-public cl-queues.priority-queue
+  (sbcl-package->cl-source-package sbcl-queues.priority-queue))
+
+(define-public ecl-queues.priority-queue
+  (sbcl-package->ecl-package sbcl-queues.priority-queue))
+
+(define-public sbcl-queues.priority-cqueue
+  (package
+    (inherit sbcl-queues)
+    (name "sbcl-queues.priority-cqueue")
+    (inputs
+     `(("sbcl-queues" ,sbcl-queues)
+       ("sbcl-queues.priority-queue" ,sbcl-queues.priority-queue)
+       ("bordeaux-threads" ,sbcl-bordeaux-threads)))
+    (arguments
+     `(#:asd-file "queues.priority-cqueue.asd"))
+    (synopsis "Thread safe fibonacci priority queue implementation")
+    (description
+     "This is a simple queue library for Common Lisp with features such as
+non-consing thread safe queues and fibonacci priority queues.")
+    (license license:expat)))
+
+(define-public cl-queues.priority-cqueue
+  (sbcl-package->cl-source-package sbcl-queues.priority-cqueue))
+
+(define-public ecl-queues.priority-cqueue
+  (sbcl-package->ecl-package sbcl-queues.priority-cqueue))
+
+(define sbcl-cffi-bootstrap
+  (package
+    (name "sbcl-cffi-bootstrap")
+    (version "0.19.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://github.com/cffi/cffi/archive/v"
+                           version ".tar.gz"))
+       (sha256
+        (base32 "07bc3c1fbfx17wgrvx6bh9byilfzfwv5n597cfdllm0vzwvbmiyk"))
+       (file-name (string-append name "-" version ".tar.gz"))))
+    (build-system asdf-build-system/sbcl)
+    (inputs
+     `(("libffi" ,libffi)
+       ("alexandria" ,sbcl-alexandria)
+       ("babel" ,sbcl-babel)
+       ("trivial-features" ,sbcl-trivial-features)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (arguments
+     '(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-paths
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "libffi/libffi.lisp"
+               (("libffi.so.6" all) (string-append
+                                     (assoc-ref inputs "libffi")
+                                     "/lib/" all)))
+             (substitute* "toolchain/c-toolchain.lisp"
+               (("\"cc\"") (format #f "~S" (which "gcc")))))))
+       #:asd-system-name "cffi"
+       #:tests? #f))
+    (home-page "https://common-lisp.net/project/cffi/")
+    (synopsis "Common Foreign Function Interface for Common Lisp")
+    (description "The Common Foreign Function Interface (CFFI)
+purports to be a portable foreign function interface for Common Lisp.
+The CFFI library is composed of a Lisp-implementation-specific backend
+in the CFFI-SYS package, and a portable frontend in the CFFI
+package.")
+    (license license:expat)))
+
+(define-public sbcl-cffi-toolchain
+  (package
+    (inherit sbcl-cffi-bootstrap)
+    (name "sbcl-cffi-toolchain")
+    (inputs
+     `(("libffi" ,libffi)
+       ("sbcl-cffi" ,sbcl-cffi-bootstrap)))
+    (arguments
+     (substitute-keyword-arguments (package-arguments sbcl-cffi-bootstrap)
+       ((#:asd-system-name _) #f)
+       ((#:tests? _) #t)))))
+
+(define-public sbcl-cffi-libffi
+  (package
+    (inherit sbcl-cffi-toolchain)
+    (name "sbcl-cffi-libffi")
+    (inputs
+     `(("cffi" ,sbcl-cffi-bootstrap)
+       ("cffi-grovel" ,sbcl-cffi-grovel)
+       ("trivial-features" ,sbcl-trivial-features)
+       ("libffi" ,libffi)))))
+
+(define-public sbcl-cffi-grovel
+  (package
+    (inherit sbcl-cffi-toolchain)
+    (name "sbcl-cffi-grovel")
+    (inputs
+     `(("libffi" ,libffi)
+       ("cffi" ,sbcl-cffi-bootstrap)
+       ("cffi-toolchain" ,sbcl-cffi-toolchain)
+       ("alexandria" ,sbcl-alexandria)))
+    (arguments
+     (substitute-keyword-arguments (package-arguments sbcl-cffi-toolchain)
+       ((#:phases phases)
+        `(modify-phases ,phases
+           (add-after 'build 'install-headers
+             (lambda* (#:key outputs #:allow-other-keys)
+               (install-file "grovel/common.h"
+                             (string-append
+                              (assoc-ref outputs "out")
+                              "/include/grovel"))))))))))
+
+(define-public sbcl-cffi
+  (package
+    (inherit sbcl-cffi-toolchain)
+    (name "sbcl-cffi")
+    (inputs (package-inputs sbcl-cffi-bootstrap))
+    (native-inputs
+     `(("cffi-grovel" ,sbcl-cffi-grovel)
+       ("cffi-libffi" ,sbcl-cffi-libffi)
+       ("rt" ,sbcl-rt)
+       ("bordeaux-threads" ,sbcl-bordeaux-threads)
+       ,@(package-native-inputs sbcl-cffi-bootstrap)))))
+
+(define-public sbcl-cl-sqlite
+  (let ((commit "c738e66d4266ef63a1debc4ef4a1b871a068c112"))
+    (package
+      (name "sbcl-cl-sqlite")
+      (version (git-version "0.2" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/dmitryvk/cl-sqlite")
+               (commit commit)))
+         (file-name (git-file-name "cl-sqlite" version))
+         (sha256
+          (base32
+           "1ng45k1hdb84sqjryrfx93g66bsbybmpy301wd0fdybnc5jzr36q"))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("iterate" ,sbcl-iterate)
+         ("cffi" ,sbcl-cffi)
+         ("sqlite" ,sqlite)))
+      (native-inputs
+       `(("fiveam" ,sbcl-fiveam)
+         ("bordeaux-threads" ,sbcl-bordeaux-threads)))
+      (arguments
+       `(#:tests? #f                    ; Upstream seems to have issues with tests: https://github.com/dmitryvk/cl-sqlite/issues/7
+         #:asd-file "sqlite.asd"
+         #:asd-system-name "sqlite"
+         #:phases
+         (modify-phases %standard-phases
+           (add-after 'unpack 'fix-paths
+             (lambda* (#:key inputs #:allow-other-keys)
+               (substitute* "sqlite-ffi.lisp"
+                 (("libsqlite3" all) (string-append
+                                      (assoc-ref inputs "sqlite")"/lib/" all))))))))
+      (home-page "https://common-lisp.net/project/cl-sqlite/")
+      (synopsis "Common Lisp binding for SQLite")
+      (description
+       "The @command{cl-sqlite} package is an interface to the SQLite embedded
+relational database engine.")
+      (license license:public-domain))))
+
+(define-public sbcl-parenscript
+  (let ((commit "061d8e286c81c3f45c84fb2b11ee7d83f590a8f8"))
+    (package
+      (name "sbcl-parenscript")
+      (version (git-version "2.6" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://gitlab.common-lisp.net/parenscript/parenscript")
+               (commit commit)))
+         (file-name (git-file-name "parenscript" version))
+         (sha256
+          (base32
+           "1kbhgsjbikc73m5cwdp4d4fdafyqcr1b7b630qjrziql0nh6mi3k"))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("cl-ppcre" ,sbcl-cl-ppcre)
+         ("anaphora" ,sbcl-anaphora)
+         ("named-readtables" ,sbcl-named-readtables)))
+      (home-page "https://common-lisp.net/project/parenscript/")
+      (synopsis "Translator from a subset of Common Lisp to JavaScript")
+      (description
+       "Parenscript is a translator from an extended subset of Common Lisp to
+JavaScript.  Parenscript code can run almost identically on both the
+browser (as JavaScript) and server (as Common Lisp).
+
+Parenscript code is treated the same way as Common Lisp code, making the full
+power of Lisp macros available for JavaScript.  This provides a web
+development environment that is unmatched in its ability to reduce code
+duplication and provide advanced meta-programming facilities to web
+developers.
+
+At the same time, Parenscript is different from almost all other \"language
+X\" to JavaScript translators in that it imposes almost no overhead:
+
+@itemize
+@item No run-time dependencies: Any piece of Parenscript code is runnable
+as-is.  There are no JavaScript files to include.
+@item Native types: Parenscript works entirely with native JavaScript data
+types.  There are no new types introduced, and object prototypes are not
+touched.
+@item Native calling convention: Any JavaScript code can be called without the
+need for bindings.  Likewise, Parenscript can be used to make efficient,
+self-contained JavaScript libraries.
+@item Readable code: Parenscript generates concise, formatted, idiomatic
+JavaScript code.  Identifier names are preserved.  This enables seamless
+debugging in tools like Firebug.
+@item Efficiency: Parenscript introduces minimal overhead for advanced Common
+Lisp features.  The generated code is almost as fast as hand-written
+JavaScript.
+@end itemize\n")
+      (license license:bsd-3))))
+
+(define-public cl-parenscript
+  (sbcl-package->cl-source-package sbcl-parenscript))
+
+(define-public ecl-parenscript
+  (sbcl-package->ecl-package sbcl-parenscript))
+
+(define-public sbcl-cl-json
+  (let ((commit "6dfebb9540bfc3cc33582d0c03c9ec27cb913e79"))
+    (package
+      (name "sbcl-cl-json")
+      (version (git-version "0.5" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/hankhero/cl-json")
+               (commit commit)))
+         (file-name (git-file-name "cl-json" version))
+         (sha256
+          (base32
+           "0fx3m3x3s5ji950yzpazz4s0img3l6b3d6l3jrfjv0lr702496lh"))))
+      (build-system asdf-build-system/sbcl)
+      (native-inputs
+       `(("fiveam" ,sbcl-fiveam)))
+      (home-page "https://github.com/hankhero/cl-json")
+      (synopsis "JSON encoder and decoder for Common-Lisp")
+      (description
+       "@command{cl-json} provides an encoder of Lisp objects to JSON format
+and a corresponding decoder of JSON data to Lisp objects.  Both the encoder
+and the decoder are highly customizable; at the same time, the default
+settings ensure a very simple mode of operation, similar to that provided by
+@command{yason} or @command{st-json}.")
+      (license license:expat))))
+
+(define-public cl-json
+  (sbcl-package->cl-source-package sbcl-cl-json))
+
+(define-public ecl-cl-json
+  (sbcl-package->ecl-package sbcl-cl-json))
+
+(define-public sbcl-unix-opts
+  (package
+    (name "sbcl-unix-opts")
+    (version "0.1.7")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/libre-man/unix-opts")
+             (commit version)))
+       (file-name (git-file-name "unix-opts" version))
+       (sha256
+        (base32
+         "08djdi1ard09fijb7w9bdmhmwd98b1hzmcnjw9fqjiqa0g3b44rr"))))
+    (build-system asdf-build-system/sbcl)
+    (home-page "https://github.com/hankhero/cl-json")
+    (synopsis "Unix-style command line options parser")
+    (description
+     "This is a minimalistic parser of command line options.  The main
+advantage of the library is the ability to concisely define command line
+options once and then use this definition for parsing and extraction of
+command line arguments, as well as printing description of command line
+options (you get --help for free).  This way you don't need to repeat
+yourself.  Also, @command{unix-opts} doesn't depend on anything and allows to
+precisely control behavior of the parser via Common Lisp restarts.")
+    (license license:expat)))
+
+(define-public cl-unix-opts
+  (sbcl-package->cl-source-package sbcl-unix-opts))
+
+(define-public ecl-unix-opts
+  (sbcl-package->ecl-package sbcl-unix-opts))
+
+(define-public sbcl-trivial-garbage
+  (package
+    (name "sbcl-trivial-garbage")
+    (version "0.21")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "https://github.com/trivial-garbage/trivial-garbage/archive/v"
+             version ".tar.gz"))
+       (sha256
+        (base32 "0b244nlszkrqawsnp568clnx32xmvjmbbagbz7625w9n0yq7396y"))
+       (file-name (string-append "trivial-garbage-" version ".tar.gz"))))
+    (build-system asdf-build-system/sbcl)
+    (native-inputs
+     `(("rt" ,sbcl-rt)))
+    (home-page "https://common-lisp.net/project/trivial-garbage/")
+    (synopsis "Portable GC-related APIs for Common Lisp")
+    (description "@command{trivial-garbage} provides a portable API to
+finalizers, weak hash-tables and weak pointers on all major implementations of
+the Common Lisp programming language.")
+    (license license:public-domain)))
+
+(define-public cl-trivial-garbage
+  (sbcl-package->cl-source-package sbcl-trivial-garbage))
+
+(define-public ecl-trivial-garbage
+  (sbcl-package->ecl-package sbcl-trivial-garbage))
+
+(define-public sbcl-closer-mop
+  (let ((commit "fac29ce90e3a46e1fc6cf182190e193526fa9dbc"))
+    (package
+      (name "sbcl-closer-mop")
+      (version (git-version  "1.0.0" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/pcostanza/closer-mop")
+               (commit commit)))
+         (sha256
+          (base32 "0hvh77y869h8fg9di5snyg85fxq6fdh9gj1igmx1g6j6j5x915dl"))
+         (file-name (git-file-name "closer-mop" version ))))
+      (build-system asdf-build-system/sbcl)
+      (home-page "https://github.com/pcostanza/closer-mop")
+      (synopsis "Rectifies absent or incorrect CLOS MOP features")
+      (description "Closer to MOP is a compatibility layer that rectifies many
+of the absent or incorrect CLOS MOP features across a broad range of Common
+Lisp implementations.")
+      (license license:expat))))
+
+(define-public cl-closer-mop
+  (sbcl-package->cl-source-package sbcl-closer-mop))
+
+(define-public ecl-closer-mop
+  (sbcl-package->ecl-package sbcl-closer-mop))
+
+(define sbcl-cl-cffi-gtk-boot0
+  (let ((commit "29443c5aaca975709df8025c4649366d882033cb"))
+    (package
+      (name "sbcl-cl-cffi-gtk-boot0")
+      (version (git-version "0.11.2" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/Ferada/cl-cffi-gtk/")
+               (commit commit)))
+         (file-name (git-file-name "cl-cffi-gtk" version))
+         (sha256
+          (base32
+           "0f6s92sf8xyzh1yksqx8bsy1sv0zmy0c13j3b8bavaba5hlxpxah"))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("iterate" ,sbcl-iterate)
+         ("cffi" ,sbcl-cffi)
+         ("trivial-features" ,sbcl-trivial-features)))
+      (home-page "https://github.com/Ferada/cl-cffi-gtk/")
+      (synopsis "Common Lisp binding for GTK+3")
+      (description
+       "@command{cl-cffi-gtk} is a Lisp binding to GTK+ 3 (GIMP Toolkit) which
+is a library for creating graphical user interfaces.")
+      (license license:lgpl3))))
+
+(define-public sbcl-cl-cffi-gtk-glib
+  (package
+    (inherit sbcl-cl-cffi-gtk-boot0)
+    (name "sbcl-cl-cffi-gtk-glib")
+    (inputs
+     `(("glib" ,glib)
+       ,@(package-inputs sbcl-cl-cffi-gtk-boot0)))
+    (arguments
+     `(#:asd-file "glib/cl-cffi-gtk-glib.asd"
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-paths
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "glib/glib.init.lisp"
+               (("libglib|libgthread" all) (string-append
+                                            (assoc-ref inputs "glib") "/lib/" all))))))))))
+
+(define-public sbcl-cl-cffi-gtk-gobject
+  (package
+    (inherit sbcl-cl-cffi-gtk-boot0)
+    (name "sbcl-cl-cffi-gtk-gobject")
+    (inputs
+     `(("glib" ,glib)
+       ("cl-cffi-gtk-glib" ,sbcl-cl-cffi-gtk-glib)
+       ("trivial-garbage" ,sbcl-trivial-garbage)
+       ("bordeaux-threads" ,sbcl-bordeaux-threads)
+       ("closer-mop" ,sbcl-closer-mop)
+       ,@(package-inputs sbcl-cl-cffi-gtk-boot0)))
+    (arguments
+     `(#:asd-file "gobject/cl-cffi-gtk-gobject.asd"
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-paths
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "gobject/gobject.init.lisp"
+               (("libgobject" all) (string-append
+                                    (assoc-ref inputs "glib") "/lib/" all))))))))))
+
+(define-public sbcl-cl-cffi-gtk-gio
+  (package
+    (inherit sbcl-cl-cffi-gtk-boot0)
+    (name "sbcl-cl-cffi-gtk-gio")
+    (inputs
+     `(("glib" ,glib)
+       ("cl-cffi-gtk-glib" ,sbcl-cl-cffi-gtk-glib)
+       ("cl-cffi-gtk-gobject" ,sbcl-cl-cffi-gtk-gobject)
+       ,@(package-inputs sbcl-cl-cffi-gtk-boot0)))
+    (arguments
+     `(#:asd-file "gio/cl-cffi-gtk-gio.asd"
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-paths
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "gio/gio.init.lisp"
+               (("libgio" all)
+                (string-append
+                 (assoc-ref inputs "glib") "/lib/" all))))))))))
+
+(define-public sbcl-cl-cffi-gtk-cairo
+  (package
+    (inherit sbcl-cl-cffi-gtk-boot0)
+    (name "sbcl-cl-cffi-gtk-cairo")
+    (inputs
+     `(("cairo" ,cairo)
+       ("cl-cffi-gtk-glib" ,sbcl-cl-cffi-gtk-glib)
+       ,@(package-inputs sbcl-cl-cffi-gtk-boot0)))
+    (arguments
+     `(#:asd-file "cairo/cl-cffi-gtk-cairo.asd"
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-paths
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "cairo/cairo.init.lisp"
+               (("libcairo" all)
+                (string-append
+                 (assoc-ref inputs "cairo") "/lib/" all))))))))))
+
+(define-public sbcl-cl-cffi-gtk-pango
+  (package
+    (inherit sbcl-cl-cffi-gtk-boot0)
+    (name "sbcl-cl-cffi-gtk-pango")
+    (inputs
+     `(("pango" ,pango)
+       ("cl-cffi-gtk-glib" ,sbcl-cl-cffi-gtk-glib)
+       ("cl-cffi-gtk-gobject" ,sbcl-cl-cffi-gtk-gobject)
+       ("cl-cffi-gtk-cairo" ,sbcl-cl-cffi-gtk-cairo)
+       ,@(package-inputs sbcl-cl-cffi-gtk-boot0)))
+    (arguments
+     `(#:asd-file "pango/cl-cffi-gtk-pango.asd"
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-paths
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "pango/pango.init.lisp"
+               (("libpango" all)
+                (string-append
+                 (assoc-ref inputs "pango") "/lib/" all))))))))))
+
+(define-public sbcl-cl-cffi-gtk-gdk-pixbuf
+  (package
+    (inherit sbcl-cl-cffi-gtk-boot0)
+    (name "sbcl-cl-cffi-gtk-gdk-pixbuf")
+    (inputs
+     `(("gdk-pixbuf" ,gdk-pixbuf)
+       ("cl-cffi-gtk-gobject" ,sbcl-cl-cffi-gtk-gobject)
+       ,@(package-inputs sbcl-cl-cffi-gtk-boot0)))
+    (arguments
+     `(#:asd-file "gdk-pixbuf/cl-cffi-gtk-gdk-pixbuf.asd"
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-paths
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "gdk-pixbuf/gdk-pixbuf.init.lisp"
+               (("libgdk_pixbuf" all)
+                (string-append
+                 (assoc-ref inputs "gdk-pixbuf") "/lib/" all))))))))))
+
+(define-public sbcl-cl-cffi-gtk-gdk
+  (package
+    (inherit sbcl-cl-cffi-gtk-boot0)
+    (name "sbcl-cl-cffi-gtk-gdk")
+    (inputs
+     `(("gtk" ,gtk+)
+       ("cl-cffi-gtk-gobject" ,sbcl-cl-cffi-gtk-gobject)
+       ("cl-cffi-gtk-gio" ,sbcl-cl-cffi-gtk-gio)
+       ("cl-cffi-gtk-gdk-pixbuf" ,sbcl-cl-cffi-gtk-gdk-pixbuf)
+       ("cl-cffi-gtk-cairo" ,sbcl-cl-cffi-gtk-cairo)
+       ("cl-cffi-gtk-pango" ,sbcl-cl-cffi-gtk-pango)
+       ,@(package-inputs sbcl-cl-cffi-gtk-boot0)))
+    (arguments
+     `(#:asd-file "gdk/cl-cffi-gtk-gdk.asd"
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'fix-paths
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "gdk/gdk.init.lisp"
+               (("libgdk" all)
+                (string-append
+                 (assoc-ref inputs "gtk") "/lib/" all)))
+             (substitute* "gdk/gdk.package.lisp"
+               (("libgtk" all)
+                (string-append
+                 (assoc-ref inputs "gtk") "/lib/" all))))))))))
+
+(define-public sbcl-cl-cffi-gtk
+  (package
+    (inherit sbcl-cl-cffi-gtk-boot0)
+    (name "sbcl-cl-cffi-gtk")
+    (inputs
+     `(("cl-cffi-gtk-glib" ,sbcl-cl-cffi-gtk-glib)
+       ("cl-cffi-gtk-gobject" ,sbcl-cl-cffi-gtk-gobject)
+       ("cl-cffi-gtk-gio" ,sbcl-cl-cffi-gtk-gio)
+       ("cl-cffi-gtk-gdk" ,sbcl-cl-cffi-gtk-gdk)
+       ,@(package-inputs sbcl-cl-cffi-gtk-boot0)))
+    (native-inputs
+     `(("fiveam" ,sbcl-fiveam)))
+    (arguments
+     `(#:asd-file "gtk/cl-cffi-gtk.asd"
+       #:test-asd-file "test/cl-cffi-gtk-test.asd"
+       ;; TODO: Tests fail with memory fault.
+       ;; See https://github.com/Ferada/cl-cffi-gtk/issues/24.
+       #:tests? #f))))
+
+(define-public sbcl-cl-webkit
+  (let ((commit "cd2a9008e0c152e54755e8a7f07b050fe36bab31"))
+    (package
+      (name "sbcl-cl-webkit")
+      (version (git-version "2.4" "1" commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/atlas-engineer/cl-webkit")
+               (commit commit)))
+         (file-name (git-file-name "cl-webkit" version))
+         (sha256
+          (base32
+           "0f5lyn9i7xrn3g1bddga377mcbawkbxydijpg389q4n04gqj0vwf"))))
+      (build-system asdf-build-system/sbcl)
+      (inputs
+       `(("cffi" ,sbcl-cffi)
+         ("cl-cffi-gtk" ,sbcl-cl-cffi-gtk)
+         ("webkitgtk" ,webkitgtk)))
+      (arguments
+       `(#:asd-file "webkit2/cl-webkit2.asd"
+         #:asd-system-name "cl-webkit2"
+         #:phases
+         (modify-phases %standard-phases
+           (add-after 'unpack 'fix-paths
+             (lambda* (#:key inputs #:allow-other-keys)
+               (substitute* "webkit2/webkit2.init.lisp"
+                 (("libwebkit2gtk" all)
+                  (string-append
+                   (assoc-ref inputs "webkitgtk") "/lib/" all))))))))
+      (home-page "https://github.com/atlas-engineer/cl-webkit")
+      (synopsis "Binding to WebKitGTK+ for Common Lisp")
+      (description
+       "@command{cl-webkit} is a binding to WebKitGTK+ for Common Lisp,
+currently targeting WebKit version 2.  The WebKitGTK+ library adds web
+browsing capabilities to an application, leveraging the full power of the
+WebKit browsing engine.")
+      (license license:expat))))
+
+(define-public sbcl-lparallel
+  (package
+    (name "sbcl-lparallel")
+    (version "2.8.4")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/lmj/lparallel/")
+             (commit (string-append "lparallel-" version))))
+       (file-name (git-file-name "lparallel" version))
+       (sha256
+        (base32
+         "0g0aylrbbrqsz0ahmwhvnk4cmc2931fllbpcfgzsprwnqqd7vwq9"))))
+    (build-system asdf-build-system/sbcl)
+    (inputs
+     `(("alexandria" ,sbcl-alexandria)
+       ("bordeaux-threads" ,sbcl-bordeaux-threads)
+       ("trivial-garbage" ,sbcl-trivial-garbage)))
+    (home-page "https://lparallel.org/")
+    (synopsis "Parallelism for Common Lisp")
+    (description
+     "@command{lparallel} is a library for parallel programming in Common
+Lisp, featuring:
+
+@itemize
+@item a simple model of task submission with receiving queue,
+@item constructs for expressing fine-grained parallelism,
+@item asynchronous condition handling across thread boundaries,
+@item parallel versions of map, reduce, sort, remove, and many others,
+@item promises, futures, and delayed evaluation constructs,
+@item computation trees for parallelizing interconnected tasks,
+@item bounded and unbounded FIFO queues,
+@item high and low priority tasks,
+@item task killing by category,
+@item integrated timeouts.
+@end itemize\n")
+    (license license:expat)))
+
+(define-public cl-lparallel
+  (sbcl-package->cl-source-package sbcl-lparallel))
+
+(define-public ecl-lparallel
+  (sbcl-package->ecl-package sbcl-lparallel))
diff --git a/gnu/packages/llvm.scm b/gnu/packages/llvm.scm
index d0791d00cc..54a17be8f4 100644
--- a/gnu/packages/llvm.scm
+++ b/gnu/packages/llvm.scm
@@ -7,6 +7,7 @@
 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -270,7 +271,8 @@ code analysis tools.")
    llvm-3.9.1
    "16gc2gdmp5c800qvydrdhsp0bzb97s8wrakl6i8a4lgslnqnf2fk"
    '("clang-runtime-asan-build-fixes.patch"
-     "clang-runtime-esan-build-fixes.patch")))
+     "clang-runtime-esan-build-fixes.patch"
+     "clang-3.5-libsanitizer-ustat-fix.patch")))
 
 (define-public clang-3.9.1
   (clang-from-llvm llvm-3.9.1 clang-runtime-3.9.1
@@ -294,7 +296,8 @@ code analysis tools.")
   (clang-runtime-from-llvm
    llvm-3.8
    "0p0y85c7izndbpg2l816z7z7558axq11d5pwkm4h11sdw7d13w0d"
-   '("clang-runtime-asan-build-fixes.patch")))
+   '("clang-runtime-asan-build-fixes.patch"
+     "clang-3.5-libsanitizer-ustat-fix.patch")))
 
 (define-public clang-3.8
   (clang-from-llvm llvm-3.8 clang-runtime-3.8
@@ -317,7 +320,8 @@ code analysis tools.")
   (clang-runtime-from-llvm
    llvm-3.7
    "10c1mz2q4bdq9bqfgr3dirc6hz1h3sq8573srd5q5lr7m7j6jiwx"
-   '("clang-runtime-asan-build-fixes.patch")))
+   '("clang-runtime-asan-build-fixes.patch"
+     "clang-3.5-libsanitizer-ustat-fix.patch")))
 
 (define-public clang-3.7
   (clang-from-llvm llvm-3.7 clang-runtime-3.7
diff --git a/gnu/packages/lsof.scm b/gnu/packages/lsof.scm
index 8b3ebe2945..311e244608 100644
--- a/gnu/packages/lsof.scm
+++ b/gnu/packages/lsof.scm
@@ -2,6 +2,7 @@
 ;;; Copyright © 2013 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Ludovic Courtès <ludo@gnu.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -77,6 +78,12 @@
             #t))
         (add-before 'check 'disable-failing-tests
           (lambda _
+            ;; In libc 2.28, the 'major' and 'minor' macros are provided by
+            ;; <sys/sysmacros.h> only so include it.
+            (substitute* "tests/LTlib.c"
+              (("#ifndef lint")
+               "#include <sys/sysmacros.h>\n\n#ifndef lint"))
+
             (substitute* "tests/Makefile"
               ;; Fails with ‘ERROR!!! client gethostbyaddr() failure’.
               (("(STDTST=.*) LTsock" _ prefix) prefix)
diff --git a/gnu/packages/lxde.scm b/gnu/packages/lxde.scm
index 19938fa93c..c45beb8bbb 100644
--- a/gnu/packages/lxde.scm
+++ b/gnu/packages/lxde.scm
@@ -164,7 +164,7 @@ toolkit.  It allows users to monitor and control of running processes.")
 (define-public lxterminal
   (package
     (name "lxterminal")
-    (version "0.3.1")
+    (version "0.3.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/lxde/LXTerminal"
@@ -172,7 +172,7 @@ toolkit.  It allows users to monitor and control of running processes.")
                                   version "/" name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0jrc3m0hbxcmcgahwjlm46s2350gh80ggb6a90xy0h6xqa3z73fd"))))
+                "1124pghrhnx6q4391ri8nvi6bsmvbj1dx81an08mird8jf2b2rii"))))
     (build-system gnu-build-system)
     (inputs `(("gtk+" ,gtk+-2)
               ("vte"  ,vte/gtk+-2)))
diff --git a/gnu/packages/machine-learning.scm b/gnu/packages/machine-learning.scm
index 9aa61bd8f8..990a6c771a 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -750,7 +750,24 @@ data analysis.")
     (license license:bsd-3)))
 
 (define-public python2-scikit-learn
-  (package-with-python2 python-scikit-learn))
+  (let ((parent (package-with-python2 python-scikit-learn)))
+    (package (inherit parent)
+      (arguments
+       (substitute-keyword-arguments (package-arguments parent)
+         ((#:phases phases)
+          `(modify-phases ,phases
+             (replace 'check
+               (lambda _
+                 ;; Restrict OpenBLAS threads to prevent segfaults while testing!
+                 (setenv "OPENBLAS_NUM_THREADS" "1")
+                 ;; Some tests expect to be able to write to HOME.
+                 (setenv "HOME" "/tmp")
+                 ;; Disable tests that require network access
+                 (delete-file "sklearn/datasets/tests/test_kddcup99.py")
+                 (delete-file "sklearn/datasets/tests/test_mldata.py")
+                 (delete-file "sklearn/datasets/tests/test_rcv1.py")
+                 (invoke "pytest" "sklearn")
+                 #t)))))))))
 
 (define-public python-autograd
   (let* ((commit "442205dfefe407beffb33550846434baa90c4de7")
diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 5435f89c42..73a17fb21b 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -763,14 +763,14 @@ invoking @command{notifymuch} from the post-new hook.")
 (define-public notmuch
   (package
     (name "notmuch")
-    (version "0.27")
+    (version "0.28")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://notmuchmail.org/releases/notmuch-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0xh8vq2sa7r07xb3n13drc6gdiqhcgl0pj0za5xj43qkiwpikls0"))))
+                "0dqarmjc8544m2w7bqrqmvsfy55fw82707z3lz9cql8nr777bjmc"))))
     (build-system gnu-build-system)
     (arguments
      `(#:modules ((guix build gnu-build-system)
@@ -2556,17 +2556,16 @@ PGP handling, multiple servers, and secure connections.")
 (define-public imapfilter
   (package
     (name "imapfilter")
-    (version "2.6.11")
+    (version "2.6.12")
     (source
      (origin
-       (method url-fetch)
-       (uri
-        (string-append "https://github.com/lefcha/imapfilter/archive/"
-                       "v" version ".tar.gz"))
-       (file-name (string-append name "-" version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/lefcha/imapfilter.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32
-         "1yslvwr3w5fnl06gfrp0lim8zdlasx3cvgd2fsqi0695xnb9bsms"))))
+        (base32 "0vzpc54fjf5vb5vx5w0fl20xvx1k9cg6a3hbl86mm8kwsqf3wrab"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f
diff --git a/gnu/packages/mate.scm b/gnu/packages/mate.scm
index 88f64fdb66..5919c714ee 100644
--- a/gnu/packages/mate.scm
+++ b/gnu/packages/mate.scm
@@ -1411,7 +1411,7 @@ can be used as backgrounds in the MATE Desktop environment.")
     (inputs
      `(("atk" ,atk)
        ("cairo" ,cairo)
-       ("enchant" ,enchant)
+       ("enchant" ,enchant-1.6)
        ("glib" ,glib)
        ("gtk+" ,gtk+)
        ("gtksourceview" ,gtksourceview)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index b00d1aa8f1..aa9c7478b7 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -239,6 +239,50 @@ triangulations.")
     (license (license:non-copyleft "file://COPYING.txt"
                                    "See COPYING in the distribution."))))
 
+(define-public python-cvxopt
+  (package
+    (name "python-cvxopt")
+    (version "1.2.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/cvxopt/cvxopt.git")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "05mnjil9palaa48xafdfh4f5pr4z7aqjr995rwl08qfyxs8y0crf"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'find-libraries
+           (lambda* (#:key inputs #:allow-other-keys)
+             (setenv "CVXOPT_BLAS_LIB" "openblas")
+             (setenv "CVXOPT_BUILD_FFTW" "1")
+             (setenv "CVXOPT_BUILD_GLPK" "1")
+             (setenv "CVXOPT_BUILD_GSL" "1")
+             #t)))))
+    (inputs
+     `(("fftw" ,fftw)
+       ("glpk" ,glpk)
+       ("gsl" ,gsl)
+       ("lapack" ,lapack)
+       ("openblas" ,openblas)
+       ("suitesparse" ,suitesparse)))
+    (home-page "https://www.cvxopt.org")
+    (synopsis "Python library for convex optimization")
+    (description
+     "CVXOPT is a package for convex optimization based on the Python
+programming language.  Its main purpose is to make the development of software
+for convex optimization applications straightforward by building on Python’s
+extensive standard library and on the strengths of Python as a high-level
+programming language.")
+    (license license:gpl3+)))
+
+(define-public python2-cvxopt
+  (package-with-python2 python-cvxopt))
+
 (define-public units
   (package
    (name "units")
@@ -814,8 +858,11 @@ incompatible with HDF5.")
                 (mkdir-p flib)
                 (mkdir-p finc)
                 (mkdir-p fex)
-                (rename-file (string-append bin "/h5fc")
-                             (string-append fbin "/h5fc"))
+                ;; Note: When built with --enable-parallel, the 'h5fc' file
+                ;; doesn't exist, hence this condition.
+                (when (file-exists? (string-append bin "/h5fc"))
+                  (rename-file (string-append bin "/h5fc")
+                               (string-append fbin "/h5fc")))
                 (for-each (lambda (file)
                             (rename-file file
                                          (string-append flib "/" (basename file))))
@@ -1034,10 +1081,13 @@ Swath).")
      `(("mpi" ,openmpi)
        ,@(package-inputs hdf5)))
     (arguments
-     (substitute-keyword-arguments `(#:configure-flags '("--enable-parallel")
-                                     ,@(package-arguments hdf5))
+     (substitute-keyword-arguments (package-arguments hdf5)
+       ((#:configure-flags flags)
+        ``("--enable-parallel" ,@(delete "--enable-cxx" ,flags)))
        ((#:phases phases)
         `(modify-phases ,phases
+           (add-after 'build 'mpi-setup
+             ,%openmpi-setup)
            (add-before 'check 'patch-tests
              (lambda _
                ;; OpenMPI's mpirun will exit with non-zero status if it
@@ -1396,6 +1446,13 @@ can solve two kinds of problems:
        ("less" ,less)
        ("ghostscript" ,ghostscript)
        ("gnuplot" ,gnuplot)))
+    ;; Octave code uses this variable to detect directories holding multiple CA
+    ;; certificates to verify peers with.  This is required for the networking
+    ;; functions that require encryption to work properly.
+    (native-search-paths
+     (list (search-path-specification
+            (variable "CURLOPT_CAPATH")
+            (files '("etc/ssl/certs")))))
     (arguments
      `(#:configure-flags
        (list (string-append "--with-shell="
@@ -1689,13 +1746,21 @@ scientific applications modeled by partial differential equations.")
   (package (inherit petsc)
     (name "petsc-openmpi")
     (inputs
-     `(("openmpi" ,openmpi)
-       ("hdf5" ,hdf5-parallel-openmpi)
+     `(("hdf5" ,hdf5-parallel-openmpi)
+       ("metis" ,metis)
+       ("mumps" ,mumps-openmpi)
+       ("openmpi" ,openmpi)
+       ("scalapack" ,scalapack)
+       ("scotch" ,pt-scotch)
        ,@(package-inputs petsc)))
     (arguments
      (substitute-keyword-arguments (package-arguments petsc)
        ((#:configure-flags cf)
         ``("--with-mpiexec=mpirun"
+           "--with-metis=1"
+           "--with-mumps=1"
+           "--with-scalapack=1"
+           "--with-ptscotch=1"
            ,(string-append "--with-mpi-dir="
                            (assoc-ref %build-inputs "openmpi"))
            ,(string-append "--with-hdf5-include="
@@ -1705,9 +1770,9 @@ scientific applications modeled by partial differential equations.")
            ,@(delete "--with-mpi=0" ,cf)))
        ((#:phases phases)
         `(modify-phases ,phases
-           (add-before 'check 'mpi-setup
+           (add-before 'configure 'mpi-setup
              ,%openmpi-setup)))))
-    (synopsis "Library to solve PDEs (with MPI support)")))
+    (synopsis "Library to solve PDEs (with MUMPS and MPI support)")))
 
 (define-public petsc-complex-openmpi
   (package (inherit petsc-complex)
@@ -1724,7 +1789,6 @@ scientific applications modeled by partial differential equations.")
            ,@(delete "--with-mpi=0" ,cf)))))
     (synopsis "Library to solve PDEs (with complex scalars and MPI support)")))
 
-
 (define-public python-kiwisolver
   (package
     (name "python-kiwisolver")
@@ -2595,7 +2659,7 @@ to BMP, JPEG or PNG image formats.")
 (define-public maxima
   (package
     (name "maxima")
-    (version "5.41.0")
+    (version "5.42.0")
     (source
      (origin
        (method url-fetch)
@@ -2603,7 +2667,7 @@ to BMP, JPEG or PNG image formats.")
                            version "-source/" name "-" version ".tar.gz"))
        (sha256
         (base32
-         "0x0n81z0s4pl8nwpf7ivlsbvsdphm9w42250g7qdkizl0132by6s"))
+         "0d5pdihvcbwb7r4i4qs5qqgsz46hxlq33qj8is053llrgn9ylpyn"))
        (patches (search-patches "maxima-defsystem-mkdir.patch"))))
     (build-system gnu-build-system)
     (inputs
diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm
index 42a0847b7a..d50732dfc4 100644
--- a/gnu/packages/messaging.scm
+++ b/gnu/packages/messaging.scm
@@ -249,14 +249,14 @@ access to servers running the Discord protocol.")
 (define-public hexchat
   (package
     (name "hexchat")
-    (version "2.14.1")
+    (version "2.14.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://dl.hexchat.net/hexchat/hexchat-"
                                   version ".tar.xz"))
               (sha256
                (base32
-                "18h3l34zmazjlfx3irg7k7swppa62ad9ffbl0j3ry8p2xfyf8cmh"))))
+                "064nq151nzsljv97dmkifyl162d2738vbgvm1phx7yv04pjvk4kp"))))
     (build-system meson-build-system)
     (native-inputs `(("gettext" ,gettext-minimal)
                      ("perl" ,perl)
@@ -295,7 +295,7 @@ window shows the list of currently connected networks and their channels, the
 current conversation and the list of users.  It uses colors to differentiate
 between users and to highlight messages.  It checks spelling using available
 dictionaries.  HexChat can be extended with multiple addons.")
-    (home-page "http://hexchat.net/")
+    (home-page "https://hexchat.net/")
     (license license:gpl2+)))
 
 (define-public ngircd
@@ -873,7 +873,7 @@ protocols.")
 (define-public c-toxcore
   (package
     (name "c-toxcore")
-    (version "0.2.7")
+    (version "0.2.8")
     (source
      (origin
        (method url-fetch)
@@ -882,7 +882,7 @@ protocols.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "1lcw979zakyb5kzy8yfk87js3bzfz3k2jxidda6ga6ljdnqdpxmy"))))
+         "0qlkimlvbd24nlj7w9b5rpz1r807magqxmfylc1mlxsqhmfi5zj7"))))
     (arguments
      `(#:tests? #f)) ; FIXME: Testsuite seems to stay stuck on test 3. Disable
                      ; for now.
@@ -1135,7 +1135,7 @@ with several different talk daemons at the same time.")
 (define-public gloox
   (package
     (name "gloox")
-    (version "1.0.17")
+    (version "1.0.21")
     (source
      (origin
        (method url-fetch)
@@ -1143,7 +1143,7 @@ with several different talk daemons at the same time.")
                            version ".tar.bz2"))
        (sha256
         (base32
-         "09c01jr5nrm7f1ly42wg0pqqscmp48pv8y2fjx1vwbavjxdq59ri"))))
+         "1k57qgif1yii515m6jaqaibkdysfab6394bpawd2l67321f1a4rw"))))
     (build-system gnu-build-system)
     (inputs
      `(("libidn" ,libidn)
@@ -1385,7 +1385,7 @@ protocol allows.")
 (define-public mcabber
   (package
     (name "mcabber")
-    (version "1.0.5")
+    (version "1.1.0")
     (source
      (origin
        (method url-fetch)
@@ -1393,7 +1393,7 @@ protocol allows.")
                            name "-" version ".tar.bz2"))
        (sha256
         (base32
-         "0ixdzk5b3s31a4bdfqgqrsiq7vbgdzhqr49p9pz9cq9bgn0h1wm0"))))
+         "1ggh865p1rf10ffsnf4g6qv9i8bls36dxdb1nzs5r9vdqci2rz04"))))
     (build-system gnu-build-system)
     (arguments
      '(#:configure-flags (list "--enable-otr"
@@ -1472,15 +1472,16 @@ is also scriptable and extensible via Guile.")
 (define-public libmesode
   (package
     (name "libmesode")
-    (version "0.9.1")
+    (version "0.9.2")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/boothj5/libmesode/archive/"
-                                  version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/boothj5/libmesode.git")
+                    (commit version)))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "0iaj56fkd5bjvqpvq3324ni895rmbj1akbfqipjydnghfwaym4z6"))))
+                "06f5nfaypvxrbsinxa1k2vrxrs7kqmg38g4wwwk5d63hpn1pj8ak"))))
     (build-system gnu-build-system)
     (inputs
      `(("expat" ,expat)
diff --git a/gnu/packages/mpd.scm b/gnu/packages/mpd.scm
index c024152dda..3e69ddba69 100644
--- a/gnu/packages/mpd.scm
+++ b/gnu/packages/mpd.scm
@@ -47,6 +47,7 @@
   #:use-module (gnu packages linux)
   #:use-module (gnu packages mp3)
   #:use-module (gnu packages ncurses)
+  #:use-module (gnu packages pcre)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
   #:use-module (gnu packages pulseaudio)
@@ -186,7 +187,7 @@ player daemon.")
 (define-public ncmpc
   (package
     (name "ncmpc")
-    (version "0.30")
+    (version "0.32")
     (source (origin
               (method url-fetch)
               (uri
@@ -195,11 +196,14 @@ player daemon.")
                               "/ncmpc-" version ".tar.xz"))
               (sha256
                (base32
-                "18qj3cgqczgfk334x0ywxwa1ckrk9fbjyp34n4zzcxwaifshrzp3"))))
+                "1b01q1pcaw5yyhvmlffc3h0r3w8qy7rhn55a7xj4qkcfqvs8ap08"))))
     (build-system meson-build-system)
     (arguments
      `(#:configure-flags
-       (list "-Dcurses=ncurses")
+       ;; Otherwise, they are installed incorrectly, in
+       ;; '$out/share/man/man/man1'.
+       (list (string-append "-Dmandir=" (assoc-ref %outputs "out")
+                            "/share"))
        #:phases
        (modify-phases %standard-phases
          (add-before 'configure 'expand-C++-include-path
@@ -211,11 +215,13 @@ player daemon.")
                (setenv path (string-append c++ ":" (getenv path)))
                #t))))))
     (inputs `(("gcc", gcc-8)            ; for its C++14 support
-              ("glib" ,glib)
+              ("boost" ,boost)
+              ("pcre" ,pcre)
               ("libmpdclient" ,libmpdclient)
               ("ncurses" ,ncurses)))
     (native-inputs `(("gettext" ,gettext-minimal) ; for xgettext
-                     ("pkg-config" ,pkg-config)))
+                     ("pkg-config" ,pkg-config)
+                     ("python-sphinx" ,python-sphinx)))
     (synopsis "Curses Music Player Daemon client")
     (description "ncmpc is a fully featured MPD client, which runs in a
 terminal using ncurses.")
diff --git a/gnu/packages/mpi.scm b/gnu/packages/mpi.scm
index 7dfec16fc7..fc8aadef29 100644
--- a/gnu/packages/mpi.scm
+++ b/gnu/packages/mpi.scm
@@ -5,6 +5,7 @@
 ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2017 Dave Love <fx@gnu.org>
 ;;; Copyright © 2017 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -125,7 +126,7 @@ bind processes, and much more.")
   ;; Note: 2.0 isn't the default yet, see above.
   (package
     (inherit hwloc)
-    (version "2.0.1")
+    (version "2.0.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://www.open-mpi.org/software/hwloc/v"
@@ -133,7 +134,7 @@ bind processes, and much more.")
                                   "/downloads/hwloc-" version ".tar.bz2"))
               (sha256
                (base32
-                "0jf0krj1h95flmb784ifv9vnkdnajjz00p4zbhmja7vm4v67axdr"))))
+                "1phc863d5b2fvwpyyq4mlh4rkjdslh6h0h197zmyk3prwrq7si8l"))))
 
     ;; libnuma is no longer needed.
     (inputs (alist-delete "numactl" (package-inputs hwloc)))
diff --git a/gnu/packages/mtools.scm b/gnu/packages/mtools.scm
index f49a035b41..e4750f579f 100644
--- a/gnu/packages/mtools.scm
+++ b/gnu/packages/mtools.scm
@@ -2,6 +2,7 @@
 ;;; Copyright © 2013 John Darrington <jmd@gnu.org>
 ;;; Copyright © 2015 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -27,7 +28,7 @@
 (define-public mtools
   (package
     (name "mtools")
-    (version "4.0.18")
+    (version "4.0.19")
     (source
      (origin
       (method url-fetch)
@@ -35,7 +36,7 @@
                           version ".tar.gz"))
       (sha256
        (base32
-        "1hxciksv7av5ilnkvwbidyxxr1gzn24lr0mz9z8drkml7780im1h"))))
+        "003qnj4rs22v2sih3is55scvav8xq9p1dp5b7gnyl67a60ky516r"))))
     (build-system gnu-build-system)
     (home-page "https://www.gnu.org/software/mtools/")
     (synopsis "Access MS-DOS disks without mounting")
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index e563062018..ac2ed81895 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -718,6 +718,7 @@ audio and video).")
     (build-system scons-build-system)
     (arguments
      `(#:scons-flags (list (string-append "PREFIX=" %output))
+       #:scons ,scons-python2
        #:tests? #f)) ;no "check" target
     (inputs
      `(("boost" ,boost)
@@ -1726,7 +1727,7 @@ export.")
 (define-public pd
   (package
     (name "pd")
-    (version "0.47-1")
+    (version "0.49-0")
     (source (origin
               (method url-fetch)
               (uri
@@ -1734,16 +1735,20 @@ export.")
                               version ".src.tar.gz"))
               (sha256
                (base32
-                "0k5s949kqd7yw97h3m8z81bjz32bis9m4ih8df1z0ymipnafca67"))))
+                "18rzqbpgnnvyslap7k0ly87aw1bbxkb0rk5agpr423ibs9slxq6j"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; no "check" target
+       #:configure-flags
+       (list
+        "--enable-jack"
+        (string-append "--with-wish=" (string-append
+                                       (assoc-ref %build-inputs "tk")
+                                       "/bin/wish8.6")))
        #:phases
        (modify-phases %standard-phases
-         (add-before 'configure 'fix-wish-path
+         (add-before 'configure 'fix-with-path
            (lambda _
-             (substitute* "src/s_inter.c"
-               (("  wish ") (string-append "  " (which "wish8.6") " ")))
              (substitute* "tcl/pd-gui.tcl"
                (("exec wish ") (string-append "exec " (which "wish8.6") " ")))
              #t))
@@ -1773,6 +1778,42 @@ programming methods as well as for realizing complex systems for large-scale
 projects.")
     (license license:bsd-3)))
 
+(define-public libpd
+  (package
+    (name "libpd")
+    (version "0.11.0")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/libpd/libpd.git")
+                    (commit version)
+                    (recursive? #t)))   ; for the 'pure-data' submodule
+              (file-name (string-append name "-" version "-checkout"))
+              (sha256
+               (base32
+                "1bcg1d9iyf9n37hwwphmih0c8rd1xcqykil5z1cax6xfs76552nk"))))
+    (build-system gnu-build-system)
+    (arguments
+     '(#:tests? #f                      ; no tests
+       #:make-flags '("CC=gcc")
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure)            ; no configure script
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out (assoc-ref outputs "out")))
+               (invoke "make" "install"
+                       (string-append "prefix=" out)
+                       ;; XXX: Fix the last 2 lines of 'install' target.
+                       "LIBPD_IMPLIB=NO"
+                       "LIBPD_DEF=NO")))))))
+    (home-page "http://libpd.cc/")
+    (synopsis "Pure Data as an embeddable audio synthesis library")
+    (description
+     "Libpd provides Pure Data as an embeddable audio synthesis library.  Its
+main purpose is to liberate raw audio rendering from audio and MIDI drivers.")
+    (license license:bsd-3)))
+
 (define-public portmidi
   (package
     (name "portmidi")
@@ -1996,7 +2037,7 @@ capabilities, custom envelopes, effects, etc.")
 (define-public yoshimi
   (package
     (name "yoshimi")
-    (version "1.5.8.2")
+    (version "1.5.9")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/yoshimi/"
@@ -2004,7 +2045,7 @@ capabilities, custom envelopes, effects, etc.")
                                   "/yoshimi-" version ".tar.bz2"))
               (sha256
                (base32
-                "1kg7d6mnzdwzsqhrf7pmrf1hzgfpbpm5lv8xkaz32wiv391qrnxc"))))
+                "1nqwxwq6814m860zrh33r85vdyi2bgkvjg5372h3ngcdmxnb7wr0"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f ; there are no tests
@@ -2425,6 +2466,47 @@ and managing stations, can be controlled remotely via fifo, and can run
 event-based scripts for scrobbling, notifications, etc.")
     (license license:expat)))
 
+(define-public picard
+  (package
+    (name "picard")
+    (version "2.0.4")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://musicbrainz.osuosl.org/pub/musicbrainz/"
+                    "picard/picard-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0ds3ylpqn717fnzcjrfn05v5xram01bj6n3hwn9igmkd1jgf8vhc"))))
+    (build-system python-build-system)
+    (arguments
+     '(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-source
+           (lambda* (#:key inputs #:allow-other-keys)
+             (substitute* "picard/const/__init__.py"
+               (("pyfpcalc")
+                (string-append
+                 "pyfpcalc', '"
+                 (assoc-ref inputs "chromaprint") "/bin/fpcalc")))))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (invoke "python" "setup.py" "install"
+                     (string-append "--prefix=" (assoc-ref outputs "out"))
+                     "--root=/"))))))
+    (native-inputs
+     `(("gettext" ,gettext-minimal)))
+    (inputs
+     `(("chromaprint" ,chromaprint)
+       ("python-pyqt" ,python-pyqt)
+       ("python-mutagen" ,python-mutagen)))
+    (home-page "https://picard.musicbrainz.org/")
+    (synopsis "Graphical music tagging application")
+    (description
+     "MusicBrainz Picard is a music tagging application, supporting multiple
+formats, looking up tracks through metadata and audio fingerprints.")
+    (license license:gpl2+)))
+
 (define-public python-mutagen
   (package
     (name "python-mutagen")
@@ -3486,7 +3568,7 @@ are a C compiler and glib.  Full API documentation and examples are included.")
        ("fltk" ,fltk)
        ("libogg" ,libogg)
        ("libsamplerate" ,libsamplerate)
-       ("fluidsynth" ,fluidsynth)
+       ("fluidsynth" ,fluidsynth-1)         ;XXX: try using 2.x when updating
        ("libvorbis" ,libvorbis)
        ("alsa-lib" ,alsa-lib)
        ("portaudio" ,portaudio)
diff --git a/gnu/packages/nano.scm b/gnu/packages/nano.scm
index 9396588fc8..8f96b605a6 100644
--- a/gnu/packages/nano.scm
+++ b/gnu/packages/nano.scm
@@ -30,7 +30,7 @@
 (define-public nano
   (package
     (name "nano")
-    (version "3.0")
+    (version "3.1")
     (source
      (origin
       (method url-fetch)
@@ -38,7 +38,7 @@
                           version ".tar.xz"))
       (sha256
        (base32
-        "1868hg9s584fwjrh0fzdrixmxc2qhw520z4q5iv68kjiajivr9g0"))))
+        "17kinzyv6vwgyx2d0ym1kp65qbf7kxzwpyg21ic1rijv1aj2rh0l"))))
     (build-system gnu-build-system)
     (inputs
      `(("gettext" ,gettext-minimal)
diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm
index abc616de3c..5a0c464252 100644
--- a/gnu/packages/networking.scm
+++ b/gnu/packages/networking.scm
@@ -87,6 +87,7 @@
   #:use-module (gnu packages perl-check)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages python-web)
   #:use-module (gnu packages qt)
   #:use-module (gnu packages readline)
   #:use-module (gnu packages ssh)
@@ -580,7 +581,7 @@ of the same name.")
 (define-public wireshark
   (package
     (name "wireshark")
-    (version "2.6.3")
+    (version "2.6.4")
     (source
      (origin
        (method url-fetch)
@@ -588,7 +589,7 @@ of the same name.")
                            version ".tar.xz"))
        (sha256
         (base32
-         "1v538h02y8avwy3cr11xz6wkyf9xd8qva4ng4sl9f2fw4skahn6i"))))
+         "0qf81dk726sdsmjqa9nd251j1cwvzkyb4hrlp6w4iwa3cdz00sx0"))))
     (build-system gnu-build-system)
     (inputs `(("c-ares" ,c-ares)
               ("glib" ,glib)
@@ -651,7 +652,7 @@ network frames.")
 (define-public fping
   (package
     (name "fping")
-    (version "4.0")
+    (version "4.1")
     (source
      (origin
        (method url-fetch)
@@ -659,9 +660,9 @@ network frames.")
                            version ".tar.gz"))
        (sha256
         (base32
-         "1kp81wchi79l8z8rrj602fpjrd8bi84y3i7fsaclzlwap5943sv7"))))
+         "0wxbvm480vij8dy4v1pi8f0c7010rx6bidg3qhsvkdf2ijhy4cr7"))))
     (build-system gnu-build-system)
-    (home-page "http://fping.org/")
+    (home-page "https://fping.org/")
     (synopsis "Send ICMP ECHO_REQUEST packets to network hosts")
     (description
      "fping is a ping like program which uses the Internet Control Message
@@ -673,6 +674,55 @@ send out a ping packet and move on to the next target in a round-robin
 fashion.")
     (license license:expat)))
 
+(define-public gandi.cli
+  (package
+    (name "gandi.cli")
+    (version "1.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri name version))
+       (sha256
+        (base32 "0vfzkw1avybjkf6fwqpf5m4kjz4c0qkkmj62f3jd0zx00vh5ly1d"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'embed-store-file-names
+           (lambda _
+             (substitute* (list "gandi/cli/modules/cert.py"
+                                "gandi/cli/tests/commands/test_certificate.py")
+               (("openssl") (which "openssl")))
+             #t))
+         (add-after 'install 'install-documentation
+           ;; The included man page may be outdated but we install it anyway,
+           ;; since it's mentioned in 'gandi --help' and better than nothing.
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out  (assoc-ref outputs "out"))
+                    (man1 (string-append out "/share/man/man1")))
+               (mkdir-p man1)
+               (with-output-to-file (string-append man1 "/gandi.1")
+                 (lambda _
+                   (invoke "rst2man.py" "gandicli.man.rst")))
+               #t))))))
+    (native-inputs
+     `(("python-docutils" ,python-docutils)   ; for rst2man.py
+       ("python-pytest-cov" ,python-pytest-cov)
+       ("python-tox" ,python-tox)))
+    (inputs
+     `(("openssl" ,openssl)
+       ("python-click" ,python-click)
+       ("python-ipy" ,python-ipy)
+       ("python-pyyaml" ,python-pyyaml)
+       ("python-requests" ,python-requests)))
+    (home-page "https://cli.gandi.net")
+    (synopsis "Command-line interface to the Gandi.net Web API")
+    (description
+     "This package provides a command-line client (@command{gandi}) to buy,
+manage, and delete Internet resources from Gandi.net such as domain names,
+virtual machines, and certificates.")
+    (license license:gpl3+)))
+
 (define-public httping
   (package
     (name "httping")
@@ -852,7 +902,7 @@ private (reserved).")
 (define-public perl-net-dns
  (package
   (name "perl-net-dns")
-  (version "1.17")
+  (version "1.18")
   (source
     (origin
       (method url-fetch)
@@ -864,7 +914,7 @@ private (reserved).")
                        version ".tar.gz")))
       (sha256
         (base32
-          "1q62w9rf2w8kjzqagzr0rdn20ybl8gj3l6cdq4k8fw0sxa7zsycs"))))
+          "1lx902cbvlfl63bqfdrnyavmfwbjvrfdnwgdc1dgs1wpzja19kjj"))))
   (build-system perl-build-system)
   (inputs
     `(("perl-digest-hmac" ,perl-digest-hmac)))
@@ -877,7 +927,7 @@ private (reserved).")
 (define-public perl-socket6
  (package
   (name "perl-socket6")
-  (version "0.28")
+  (version "0.29")
   (source
     (origin
       (method url-fetch)
@@ -887,7 +937,7 @@ private (reserved).")
              ".tar.gz"))
       (sha256
         (base32
-          "11j5jzqbzmwlws9zals43ry2f1nw9qy6im7yhn9ck5rikywrmm5z"))))
+          "054izici8klfxs8hr5rljib28plijpsfymy99xbzdp047bx1b2a6"))))
   (build-system perl-build-system)
   (arguments
    `(#:phases
diff --git a/gnu/packages/nickle.scm b/gnu/packages/nickle.scm
index 860c111f43..c8179419bb 100644
--- a/gnu/packages/nickle.scm
+++ b/gnu/packages/nickle.scm
@@ -28,14 +28,14 @@
 (define-public nickle
   (package
     (name "nickle")
-    (version "2.81")
+    (version "2.82")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://nickle.org/release/nickle-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "1daqsflnqqgfkq6w6dknbm42avz70f5qxn7qidvgp472i4a37acr"))))
+                "0jy96z01qbrnmsrywn5mfa14615qdix6b8520qd65c6yjyrk8gs0"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("readline" ,readline)))
diff --git a/gnu/packages/node.scm b/gnu/packages/node.scm
index d1de7a536c..a0221601dd 100644
--- a/gnu/packages/node.scm
+++ b/gnu/packages/node.scm
@@ -5,6 +5,7 @@
 ;;; Copyright © 2016 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2017 Mike Gerwitz <mtg@gnu.org>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018 Marius Bakke <mbakke@fastmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -86,6 +87,14 @@
        (modify-phases %standard-phases
          (add-before 'configure 'patch-files
            (lambda* (#:key inputs #:allow-other-keys)
+
+             ;; This phase is inherited by Node LTS, which does not have all
+             ;; the files listed here.  Use this helper for convenience.
+             (define (delete-if-exists file)
+               (if (file-exists? file)
+                   (delete-file file)
+                   '()))
+
              ;; Fix hardcoded /bin/sh references.
              (substitute* '("lib/child_process.js"
                             "lib/internal/v8_prof_polyfill.js"
@@ -103,7 +112,7 @@
 
              ;; FIXME: These tests depend on being able to install eslint.
              ;; See https://github.com/nodejs/node/issues/17098.
-             (for-each delete-file
+             (for-each delete-if-exists
                        '("test/parallel/test-eslint-alphabetize-errors.js"
                          "test/parallel/test-eslint-buffer-constructor.js"
                          "test/parallel/test-eslint-documented-errors.js"
@@ -111,7 +120,7 @@
 
              ;; FIXME: These tests fail in the build container, but they don't
              ;; seem to be indicative of real problems in practice.
-             (for-each delete-file
+             (for-each delete-if-exists
                        '("test/async-hooks/test-ttywrap.readstream.js"
                          "test/parallel/test-util-inspect.js"
                          "test/parallel/test-v8-serdes.js"
@@ -125,6 +134,14 @@
                          "test/sequential/test-child-process-emfile.js"
                          "test/sequential/test-benchmark-child-process.js"
                          "test/sequential/test-http-regr-gh-2928.js"))
+
+             ;; These tests have an expiry date: they depend on the validity of
+             ;; TLS certificates that are bundled with the source.  We want this
+             ;; package to be reproducible forever, so remove those.
+             ;; TODO: Regenerate certs instead.
+             (for-each delete-if-exists
+                       '("test/parallel/test-tls-passphrase.js"
+                         "test/parallel/test-tls-server-verify.js"))
              #t))
          (replace 'configure
            ;; Node's configure script is actually a python script, so we can't
@@ -167,7 +184,7 @@
      `(("c-ares" ,c-ares)
        ("http-parser" ,http-parser)
        ("icu4c" ,icu4c)
-       ("libuv" ,libuv)
+       ("libuv" ,libuv-1.19)
        ("nghttp2" ,nghttp2 "lib")
        ("openssl" ,openssl)
        ("zlib" ,zlib)))
@@ -180,3 +197,16 @@ devices.")
     (home-page "https://nodejs.org/")
     (license expat)
     (properties '((timeout . 3600))))) ; 1 h
+
+(define-public node-lts
+  (package
+    (inherit node)
+    (name "node-lts")
+    (version "8.12.0")
+    (source (origin
+              (inherit (package-source node))
+              (uri (string-append "https://nodejs.org/dist/v" version
+                                  "/node-v" version ".tar.xz"))
+              (sha256
+               (base32
+                "16j1rrxkhmvpcw689ndw1raql1gz4jqn7n82z55zn63c05cgz7as"))))))
diff --git a/gnu/packages/ocaml.scm b/gnu/packages/ocaml.scm
index 7859696406..6b55e84fed 100644
--- a/gnu/packages/ocaml.scm
+++ b/gnu/packages/ocaml.scm
@@ -65,6 +65,7 @@
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system ocaml)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix svn-download)
@@ -819,7 +820,8 @@ libpanel, librsvg and quartz.")
                (let* ((out (assoc-ref outputs "out"))
                       (bin (string-append out "/bin")))
                  ;; 'unison-fsmonitor' is used in "unison -repeat watch" mode.
-                 (install-file "src/unison-fsmonitor" bin))))
+                 (install-file "src/unison-fsmonitor" bin)
+                 #t)))
            (add-after 'install 'install-doc
              (lambda* (#:key outputs #:allow-other-keys)
                (let ((doc (string-append (assoc-ref outputs "doc")
@@ -828,21 +830,19 @@ libpanel, librsvg and quartz.")
                  ;; This file needs write-permissions, because it's
                  ;; overwritten by 'docs' during documentation generation.
                  (chmod "src/strings.ml" #o600)
-                 (and (zero? (system* "make" "docs"
-                                      "TEXDIRECTIVES=\\\\draftfalse"))
-                      (begin
-                        (for-each (lambda (f)
-                                    (install-file f doc))
-                                  (map (lambda (ext)
-                                         (string-append
-                                          "doc/unison-manual." ext))
-                                       ;; Install only html documentation,
-                                       ;; since the build is currently
-                                       ;; non-reproducible with the ps, pdf,
-                                       ;; and dvi docs.
-                                       '(;;"ps" "pdf" "dvi"
-                                         "html")))
-                        #t))))))))
+                 (invoke "make" "docs"
+                         "TEXDIRECTIVES=\\\\draftfalse")
+                 (for-each (lambda (f)
+                             (install-file f doc))
+                           (map (lambda (ext)
+                                  (string-append "doc/unison-manual." ext))
+                                ;; Install only html documentation,
+                                ;; since the build is currently
+                                ;; non-reproducible with the ps, pdf,
+                                ;; and dvi docs.
+                                '(;; "ps" "pdf" "dvi"
+                                  "html")))
+                 #t))))))
     (home-page "https://www.cis.upenn.edu/~bcpierce/unison/")
     (synopsis "File synchronizer")
     (description
@@ -1650,12 +1650,13 @@ lets the client choose the concrete timeline.")
     (version "0.5.5")
     (source
       (origin
-        (method url-fetch)
-        (uri (string-append "https://github.com/savonet/ocaml-ssl/archive/"
-                            version ".tar.gz"))
-        (file-name (string-append name "-" version ".tar.gz"))
+        (method git-fetch)
+        (uri (git-reference
+              (url "https://github.com/savonet/ocaml-ssl.git")
+              (commit version)))
+        (file-name (git-file-name name version))
         (sha256 (base32
-                  "15p7652cvzdrlqxc1af11mg07wasxr1fsaj44gcmmh6bmav7wfzq"))))
+                  "0fviq8xhp3qk7pmkl7knchywsipxgb7p0z489hj8qnf2sx8xzdmy"))))
     (build-system ocaml-build-system)
     (arguments `(#:tests? #f
                  #:make-flags (list "OCAMLFIND_LDCONF=ignore")
diff --git a/gnu/packages/opencl.scm b/gnu/packages/opencl.scm
index d32e696438..da979253b0 100644
--- a/gnu/packages/opencl.scm
+++ b/gnu/packages/opencl.scm
@@ -294,23 +294,23 @@ back-end for the LLVM compiler framework.")
 (define-public pocl
   (package
     (name "pocl")
-    (version "1.1")
+    (version "1.2")
     (source
      (origin
        (method git-fetch)
        (uri (git-reference
              (url "https://github.com/pocl/pocl.git")
              (commit (string-append "v" version))))
-       (file-name (git-file-name name version))
        (sha256
-        (base32 "1z3sqn20ddv1030adchpzs65qng436gc2mb99p213mkh95jkh1l5"))))
+        (base32 "0fyiwd9nrqhl0jsac0bx17p9acpfzhyxp50mmp28mzn7psb9qidg"))
+       (file-name (git-file-name name version))))
     (build-system cmake-build-system)
     (native-inputs
      `(("libltdl" ,libltdl)
        ("pkg-config" ,pkg-config)))
     (inputs
      `(("clang" ,clang)
-       ("hwloc" ,hwloc "lib")
+       ("hwloc" ,hwloc-2.0 "lib")
        ("llvm" ,llvm)
        ("ocl-icd" ,ocl-icd)))
     (arguments
diff --git a/gnu/packages/openldap.scm b/gnu/packages/openldap.scm
index ae39870dd4..850223cd4c 100644
--- a/gnu/packages/openldap.scm
+++ b/gnu/packages/openldap.scm
@@ -293,6 +293,7 @@ servers from Python programs.")
        ("nspr" ,nspr)
        ("nss" ,nss)
        ("openldap" ,openldap)
+       ("openssl" ,openssl)             ; #included by net-snmp
        ("pcre" ,pcre)
        ("perl" ,perl)
        ("python" ,python)
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 06c344e7af..b78190b6dc 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -8,6 +8,7 @@
 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
 ;;; Copyright © 2018 Rutger Helling <rhelling@mykolab.com>
 ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org>
+;;; Copyright © 2018 Eric Bavier <bavier@member.fsf.org>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -101,8 +102,8 @@
   ;; Note: the 'update-guix-package.scm' script expects this definition to
   ;; start precisely like this.
   (let ((version "0.15.0")
-        (commit "3d43017026f9995ad128915db8ca5eafe061bf75")
-        (revision 3))
+        (commit "f9a8fce10f2d99efec7cb1dd0f6c5f0df9d1b2df")
+        (revision 6))
     (package
       (name "guix")
 
@@ -118,7 +119,7 @@
                       (commit commit)))
                 (sha256
                  (base32
-                  "167rzz2h33xmmchkplwzfq94s5jwdn5nabsq2lb84s54ps0sm89m"))
+                  "1733d5id0h44rrkyj9xw4fcqr1wawcfi8igpgk5wsn1iq4qqwv5f"))
                 (file-name (string-append "guix-" version "-checkout"))))
       (build-system gnu-build-system)
       (arguments
@@ -232,13 +233,13 @@
                                         (map (cut string-append <>
                                                   "/share/guile/site/"
                                                   effective)
-                                             deps)
+                                             (delete #f deps))
                                         ":"))
                                (gopath (string-join
                                         (map (cut string-append <>
                                                   "/lib/guile/" effective
                                                   "/site-ccache")
-                                             deps)
+                                             (delete #f deps))
                                         ":")))
 
                           (wrap-program (string-append out "/bin/guix")
@@ -345,12 +346,14 @@ the Nix package manager.")
                        "install-nodist_pkglibexecSCRIPTS")
 
                ;; We need to tell 'guix-daemon' which 'guix' command to use.
-               ;; Here we use a questionable hack where we hard-code
-               ;; "~root/.config", which could be wrong (XXX).
+               ;; Here we use a questionable hack where we hard-code root's
+               ;; current guix, which could be wrong (XXX).  Note that scripts
+               ;; like 'guix perform-download' do not run as root so we assume
+               ;; that they have access to /var/guix/profiles/per-user/root.
                (let ((out (assoc-ref outputs "out")))
                  (substitute* (find-files (string-append out "/libexec"))
                    (("exec \".*/bin/guix\"")
-                    "exec ~root/.config/guix/current/bin/guix"))
+                    "exec /var/guix/profiles/per-user/root/current-guix/bin/guix"))
                  #t)))
            (delete 'wrap-program)))))))
 
@@ -363,10 +366,29 @@ the Nix package manager.")
        ,@(alist-delete "guile" (package-inputs guix))))
     (propagated-inputs
      `(("gnutls" ,gnutls/guile-2.0)
+       ("guile-gcrypt" ,guile2.0-gcrypt)
        ("guile-json" ,guile2.0-json)
+       ("guile-sqlite3" ,guile2.0-sqlite3)
        ("guile-ssh" ,guile2.0-ssh)
        ("guile-git" ,guile2.0-git)))))
 
+(define-public guix-minimal
+  ;; A version of Guix which is built with the minimal set of dependencies, as
+  ;; outlined in the README "Requirements" section.  Intended as a CI job, so
+  ;; marked as hidden.
+  (let ((guix guile2.0-guix))
+    (hidden-package
+     (package
+       (inherit guix)
+       (name "guix-minimal")
+       (inputs
+        `(("guile" ,guile-2.0.13)
+          ,@(alist-delete "guile" (package-inputs guix))))
+       (propagated-inputs
+        (fold alist-delete
+              (package-propagated-inputs guix)
+              '("guile-json" "guile-ssh")))))))
+
 (define (source-file? file stat)
   "Return true if FILE is likely a source file, false if it is a typical
 generated file."
@@ -493,7 +515,7 @@ symlinks to the files in a common directory such as /usr/local.")
 (define-public rpm
   (package
     (name "rpm")
-    (version "4.13.0.2")
+    (version "4.14.2")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://ftp.rpm.org/releases/rpm-"
@@ -501,40 +523,20 @@ symlinks to the files in a common directory such as /usr/local.")
                                   version ".tar.bz2"))
               (sha256
                (base32
-                "1521y4ghjns449kzpwkjn9cksh686383xnfx0linzlalqc3jqgig"))))
+                "0armd7dqr8bl0isx8l4xlylm7dikasmxhhcbz336fkp2x30w5jw0"))))
     (build-system gnu-build-system)
     (arguments
      '(#:configure-flags '("--with-external-db"   ;use the system's bdb
                            "--enable-python"
                            "--without-lua")
        #:phases (modify-phases %standard-phases
-                  (add-before 'configure 'set-nspr-search-path
+                  (add-before 'configure 'set-nss-library-path
                     (lambda* (#:key inputs #:allow-other-keys)
-                      ;; nspr.pc contains the right -I flag pointing to
-                      ;; 'include/nspr', but unfortunately 'configure' doesn't
-                      ;; use 'pkg-config'.  Thus, augment CPATH.
-                      ;; Likewise for NSS.
-                      (let ((nspr (assoc-ref inputs "nspr"))
-                            (nss  (assoc-ref inputs "nss")))
-                        (setenv "CPATH"
-                                (string-append (getenv "C_INCLUDE_PATH") ":"
-                                               nspr "/include/nspr:"
-                                               nss "/include/nss"))
+                      (let ((nss (assoc-ref inputs "nss")))
                         (setenv "LIBRARY_PATH"
                                 (string-append (getenv "LIBRARY_PATH") ":"
                                                nss "/lib/nss"))
-                        #t)))
-                  (add-after 'install 'fix-rpm-symlinks
-                    (lambda* (#:key outputs #:allow-other-keys)
-                      ;; 'make install' gets these symlinks wrong.  Fix them.
-                      (let* ((out (assoc-ref outputs "out"))
-                             (bin (string-append out "/bin")))
-                        (with-directory-excursion bin
-                          (for-each (lambda (file)
-                                      (delete-file file)
-                                      (symlink "rpm" file))
-                                    '("rpmquery" "rpmverify"))
-                          #t)))))))
+                        #t))))))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
     (inputs
@@ -550,7 +552,7 @@ symlinks to the files in a common directory such as /usr/local.")
        ("bzip2" ,bzip2)
        ("zlib" ,zlib)
        ("cpio" ,cpio)))
-    (home-page "http://www.rpm.org/")
+    (home-page "http://rpm.org/")
     (synopsis "The RPM Package Manager")
     (description
      "The RPM Package Manager (RPM) is a command-line driven package
@@ -566,13 +568,13 @@ transactions from C or Python.")
 (define-public diffoscope
   (package
     (name "diffoscope")
-    (version "100")
+    (version "102")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri name version))
               (sha256
                (base32
-                "0sh7g26i5ndpa8l7xq6rnijbi3jz5izjn0b98zcnm6wpgghszw48"))))
+                "0v2z98xx7n4viw12yq83flpb9ir5ahy1gn44pic0i3dam18xhcm6"))))
     (build-system python-build-system)
     (arguments
      `(#:phases (modify-phases %standard-phases
diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm
index ec1fae6470..3dba2b8c00 100644
--- a/gnu/packages/parallel.scm
+++ b/gnu/packages/parallel.scm
@@ -48,7 +48,7 @@
 (define-public parallel
   (package
     (name "parallel")
-    (version "20180822")
+    (version "20180922")
     (source
      (origin
       (method url-fetch)
@@ -56,7 +56,7 @@
                           version ".tar.bz2"))
       (sha256
        (base32
-        "0jjs7fpvdjjb5v0j39a6k7hq9h5ap3db1j7vg1r2dq4swk23h9bm"))))
+        "07q7lzway2qf8mx6fb4q45jmirsc8pw6rgv03ifrp32jw3q8w1za"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
@@ -66,7 +66,7 @@
              (for-each
               (lambda (file)
                 (substitute* file
-                  ;; Patch hard coded '/bin/sh' in the lin ending in:
+                  ;; Patch hard coded '/bin/sh' in the line ending in:
                   ;; $Global::shell = $ENV{'PARALLEL_SHELL'} ||
                   ;;  parent_shell($$) || $ENV{'SHELL'} || "/bin/sh";
                   (("/bin/sh\\\";\n$") (string-append (which "sh") "\";\n"))))
diff --git a/gnu/packages/patches/bastet-change-source-of-unordered_set.patch b/gnu/packages/patches/bastet-change-source-of-unordered_set.patch
new file mode 100644
index 0000000000..ef3970a3e2
--- /dev/null
+++ b/gnu/packages/patches/bastet-change-source-of-unordered_set.patch
@@ -0,0 +1,40 @@
+From: Tobias Geerinckx-Rice <me@tobias.gr>
+Date: Wed, 3 Oct 2018 23:30:42 +0200
+Subject: [PATCH] bastet: Change source of unordered_set.
+
+This allows building bastet 0.43.2 with boost >=1.66.
+It was backported verbatim from the upstream master branch.
+
+From 0e03f8d4d6bc6949cf1c447e632ce0d1b98c4be1 Mon Sep 17 00:00:00 2001
+From: Federico Poloni <fpoloni@di.unipi.it>
+Date: Wed, 4 Oct 2017 19:35:01 +0200
+Subject: [PATCH] Changed source of unordered_set (should hopefully fix #6
+ without reopening #1)
+
+---
+ BastetBlockChooser.hpp | 5 ++---
+ 1 file changed, 2 insertions(+), 3 deletions(-)
+
+diff --git a/BastetBlockChooser.hpp b/BastetBlockChooser.hpp
+index 992e556..7ee3b7c 100644
+--- a/BastetBlockChooser.hpp
++++ b/BastetBlockChooser.hpp
+@@ -23,8 +23,7 @@
+ 
+ #include "Well.hpp"
+ 
+-#include <boost/tr1/tr1/unordered_set>
+-#include <set>
++#include <boost/unordered_set.hpp>
+ #include <boost/functional/hash.hpp>
+ 
+ namespace Bastet{
+@@ -75,7 +74,7 @@ namespace Bastet{
+   public:
+     Searcher(BlockType b, const Well *well, Vertex v, WellVisitor *visitor);
+   private:
+-    std::tr1::unordered_set<Vertex> _visited;
++    boost::unordered_set<Vertex> _visited;
+     //std::set<Vertex> _visited; ^^ the above is more efficient, we need to do many inserts
+     BlockType _block;
+     const Well *_well;
diff --git a/gnu/packages/patches/borg-respect-storage-quota.patch b/gnu/packages/patches/borg-respect-storage-quota.patch
new file mode 100644
index 0000000000..d23d1ffc01
--- /dev/null
+++ b/gnu/packages/patches/borg-respect-storage-quota.patch
@@ -0,0 +1,32 @@
+Make sure the client respects the storage quota set by the server:
+
+https://github.com/borgbackup/borg/issues/4093
+
+Patch copied from upstream source repository:
+
+https://github.com/borgbackup/borg/commit/975cc33206e0e3644626fb7204c34d2157715b61
+
+From 975cc33206e0e3644626fb7204c34d2157715b61 Mon Sep 17 00:00:00 2001
+From: Manu <manu@snapdragon.cc>
+Date: Wed, 3 Oct 2018 23:47:36 +0800
+Subject: [PATCH] Add storage_quota for forced_result if set by serve command.
+
+---
+ src/borg/archiver.py | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/src/borg/archiver.py b/src/borg/archiver.py
+index 916725e7..279194c1 100644
+--- a/src/borg/archiver.py
++++ b/src/borg/archiver.py
+@@ -4276,6 +4276,7 @@ def get_args(self, argv, cmd):
+             result.restrict_to_paths = forced_result.restrict_to_paths
+             result.restrict_to_repositories = forced_result.restrict_to_repositories
+             result.append_only = forced_result.append_only
++            result.storage_quota = forced_result.storage_quota
+         return result
+ 
+     def parse_args(self, args=None):
+-- 
+2.19.1
+
diff --git a/gnu/packages/patches/clang-3.5-libsanitizer-ustat-fix.patch b/gnu/packages/patches/clang-3.5-libsanitizer-ustat-fix.patch
new file mode 100644
index 0000000000..cfb09a8ce3
--- /dev/null
+++ b/gnu/packages/patches/clang-3.5-libsanitizer-ustat-fix.patch
@@ -0,0 +1,46 @@
+From d9d97cac3702b99a00cd113de98c41eb535d47ed Mon Sep 17 00:00:00 2001
+From: Efraim Flashner <efraim@flashner.co.il>
+Date: Sun, 14 Oct 2018 12:11:30 +0300
+Subject: [PATCH] patch modified from the gcc patch series, also dealing with
+ ustat.
+
+---
+ .../sanitizer_platform_limits_posix.cc            | 15 +++++++++++++--
+ 1 file changed, 13 insertions(+), 2 deletions(-)
+
+diff --git a/lib/sanitizer_common/sanitizer_platform_limits_posix.cc b/lib/sanitizer_common/sanitizer_platform_limits_posix.cc
+index 29fea6e..570b9a5 100644
+--- a/lib/sanitizer_common/sanitizer_platform_limits_posix.cc
++++ b/lib/sanitizer_common/sanitizer_platform_limits_posix.cc
+@@ -129,7 +129,6 @@
+ #include <sys/statvfs.h>
+ #include <sys/timex.h>
+ #include <sys/user.h>
+-#include <sys/ustat.h>
+ #include <linux/cyclades.h>
+ #include <linux/if_eql.h>
+ #include <linux/if_plip.h>
+@@ -222,7 +221,19 @@ namespace __sanitizer {
+ #endif  // SANITIZER_LINUX || SANITIZER_FREEBSD
+ 
+ #if SANITIZER_LINUX && !SANITIZER_ANDROID
+-  unsigned struct_ustat_sz = sizeof(struct ustat);
++  // Use pre-computed size of struct ustat to avoid <sys/ustat.h> which
++  // has been removed from glibc 2.28.
++#if defined(__aarch64__) || defined(__s390x__) || defined (__mips64) \
++  || defined(__powerpc64__) || defined(__arch64__) || defined(__sparcv9) \
++  || defined(__x86_64__)
++#define SIZEOF_STRUCT_USTAT 32
++#elif defined(__arm__) || defined(__i386__) || defined(__mips__) \
++  || defined(__powerpc__) || defined(__s390__)
++#define SIZEOF_STRUCT_USTAT 20
++#else
++#error Unknown size of struct ustat
++#endif
++  unsigned struct_ustat_sz = SIZEOF_STRUCT_USTAT;
+   unsigned struct_rlimit64_sz = sizeof(struct rlimit64);
+   unsigned struct_statvfs64_sz = sizeof(struct statvfs64);
+ #endif  // SANITIZER_LINUX && !SANITIZER_ANDROID
+-- 
+2.19.1
+
diff --git a/gnu/packages/patches/clisp-glibc-2.26.patch b/gnu/packages/patches/clisp-glibc-2.26.patch
deleted file mode 100644
index c8920ceccc..0000000000
--- a/gnu/packages/patches/clisp-glibc-2.26.patch
+++ /dev/null
@@ -1,20 +0,0 @@
-This patch comes from Debian.
-
-Description: cfree is not present in glibc-2.26, stop wrapping it
-Author: Adam Conrad <adconrad@ubuntu.com>
-Bug: https://sourceforge.net/p/clisp/bugs/717/
-Bug-Debian: https://bugs.debian.org/880686
-Applied-Upstream: https://sourceforge.net/p/clisp/clisp/ci/3bc928712d150ff1e5f6b2bfb7838655f3ff52fa/
-Reviewed-By: Sébastien Villemot <sebastien@debian.org>
-Last-Update: 2017-11-27
-
---- clisp-2.49.20170913.orig/modules/bindings/glibc/linux.lisp
-+++ clisp-2.49.20170913/modules/bindings/glibc/linux.lisp
-@@ -649,7 +649,6 @@
- (def-call-out calloc (:arguments (nmemb size_t) (size size_t))
-   (:return-type c-pointer))
- (def-call-out free (:arguments (ptr c-pointer)) (:return-type nil))
--(def-call-out cfree (:arguments (ptr c-pointer)) (:return-type nil))
- (def-call-out valloc (:arguments (size size_t)) (:return-type c-pointer))
- 
- (def-call-out abort (:arguments) (:return-type nil))
diff --git a/gnu/packages/patches/crawl-upgrade-saves.patch b/gnu/packages/patches/crawl-upgrade-saves.patch
index 301942dc30..4c0b3a427b 100644
--- a/gnu/packages/patches/crawl-upgrade-saves.patch
+++ b/gnu/packages/patches/crawl-upgrade-saves.patch
@@ -5,8 +5,9 @@ By default crawl checks for a mtime difference on files in DATADIR to see if an
 upgrade is required, but guix nulls all file dates,
 and crawl would never upgrade saves.
 
---- a/source/database.cc	2016-05-31 09:56:08.000000000 +0200
-+++ a/source/database.cc	2017-06-05 03:00:19.270632107 +0200
+diff -ur a/source/database.cc b/source/database.cc
+--- a/source/database.cc	2018-08-09 21:49:26.000000000 -0400
++++ b/source/database.cc	2018-10-07 18:06:41.022445789 -0400
 @@ -25,6 +25,7 @@
  #include "syscalls.h"
  #include "threads.h"
@@ -23,16 +24,16 @@ and crawl would never upgrade saves.
      TextDB *_parent;
      const char* lang() { return _parent ? Options.lang_name : 0; }
  public:
-@@ -165,7 +167,7 @@
+@@ -163,7 +165,7 @@
  
- TextDB::TextDB(const char* db_name, const char* dir, ...)
-     : _db_name(db_name), _directory(dir),
+ TextDB::TextDB(const char* db_name, const char* dir, vector<string> files)
+     : _db_name(db_name), _directory(dir), _input_files(files),
 -      _db(nullptr), timestamp(""), _parent(0), translation(0)
 +      _db(nullptr), timestamp(""), version(""),  _parent(0), translation(0)
  {
-     va_list args;
-     va_start(args, dir);
-@@ -187,7 +189,7 @@
+ }
+ 
+@@ -171,7 +173,7 @@
      : _db_name(parent->_db_name),
        _directory(parent->_directory + Options.lang_name + "/"),
        _input_files(parent->_input_files), // FIXME: pointless copy
@@ -41,7 +42,7 @@ and crawl would never upgrade saves.
  {
  }
  
-@@ -202,6 +204,9 @@
+@@ -186,6 +188,9 @@
          return false;
  
      timestamp = _query_database(*this, "TIMESTAMP", false, false, true);
@@ -51,7 +52,7 @@ and crawl would never upgrade saves.
      if (timestamp.empty())
          return false;
  
-@@ -245,6 +250,9 @@
+@@ -229,6 +234,9 @@
      string ts;
      bool no_files = true;
  
@@ -61,7 +62,7 @@ and crawl would never upgrade saves.
      for (const string &file : _input_files)
      {
          string full_input_path = _directory + file;
-@@ -261,7 +269,7 @@
+@@ -245,7 +253,7 @@
          ts += buf;
      }
  
@@ -70,7 +71,7 @@ and crawl would never upgrade saves.
      {
          // No point in empty databases, although for simplicity keep ones
          // for disappeared translations for now.
-@@ -321,7 +329,10 @@
+@@ -313,7 +321,10 @@
              _store_text_db(full_input_path, _db);
          }
      }
diff --git a/gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch b/gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch
deleted file mode 100644
index 5c9bd36598..0000000000
--- a/gnu/packages/patches/emacs-exwm-fix-fullscreen-issue.patch
+++ /dev/null
@@ -1,27 +0,0 @@
-From 13a14579cc1bb772735f895dd5b4b90c6812f3ee Mon Sep 17 00:00:00 2001
-From: Chris Feng <chris.w.feng@gmail.com>
-Date: Sun, 29 Jul 2018 00:00:00 +0000
-Subject: [PATCH] Fix issues with destroying full screen X windows
-
-* exwm-manage.el (exwm-manage--unmanage-window): Set the Emacs window
-of an full screen X window as non-dedicated before killing its buffer
-so as not to cause other side effects.
----
- exwm-manage.el | 4 ++++
- 1 file changed, 4 insertions(+)
-
-diff --git a/exwm-manage.el b/exwm-manage.el
-index a0a9e05..349157f 100644
---- a/exwm-manage.el
-+++ b/exwm-manage.el
-@@ -392,6 +392,10 @@ manager is shutting down."
-                                :window window :parent exwm--root :x 0 :y 0))
-             (xcb:+request exwm--connection
-                 (make-instance 'xcb:DestroyWindow :window container))))
-+        (when (exwm-layout--fullscreen-p)
-+          (let ((window (get-buffer-window)))
-+            (when window
-+              (set-window-dedicated-p window nil))))
-         (exwm-manage--set-client-list)
-         (xcb:flush exwm--connection))
-       (let ((kill-buffer-func
diff --git a/gnu/packages/patches/ghc-haddock-library-unbundle.patch b/gnu/packages/patches/ghc-haddock-library-unbundle.patch
new file mode 100644
index 0000000000..0e8b548956
--- /dev/null
+++ b/gnu/packages/patches/ghc-haddock-library-unbundle.patch
@@ -0,0 +1,86 @@
+This patch (inspired by Debian) allows ghc-haddock-library to use our
+ghc-attoparsec package instead of using a bundled version.
+
+--- a/haddock-library.cabal	2018-09-01 01:22:18.676855884 -0400
++++ b/haddock-library.cabal	2018-09-01 01:25:10.501150260 -0400
+@@ -10,7 +10,6 @@
+                       itself, see the ‘haddock’ package.
+ license:              BSD3
+ license-files:        LICENSE
+-                      vendor/attoparsec-0.13.1.0/LICENSE
+ maintainer:           Alex Biehl <alexbiehl@gmail.com>, Simon Hengel <sol@typeful.net>, Mateusz Kowalczyk <fuuzetsu@fuuzetsu.co.uk>
+ homepage:             http://www.haskell.org/haddock/
+ bug-reports:          https://github.com/haskell/haddock/issues
+@@ -28,7 +27,6 @@
+     , containers   >= 0.4.2.1 && < 0.6
+     , transformers >= 0.3.0   && < 0.6
+ 
+-  -- internal sub-lib
+   build-depends:        attoparsec
+ 
+   hs-source-dirs:       src
+@@ -49,42 +47,6 @@
+   if impl(ghc >= 8.0)
+     ghc-options: -Wcompat -Wnoncanonical-monad-instances -Wnoncanonical-monadfail-instances
+ 
+-library attoparsec
+-  default-language:     Haskell2010
+-
+-  build-depends:
+-      base         >= 4.5     && < 4.12
+-    , bytestring   >= 0.9.2.1 && < 0.11
+-    , deepseq      >= 1.3     && < 1.5
+-
+-  hs-source-dirs:       vendor/attoparsec-0.13.1.0
+-
+-  -- NB: haddock-library needs only small part of lib:attoparsec
+-  --     internally, so we only bundle that subset here
+-  exposed-modules:
+-    Data.Attoparsec.ByteString
+-    Data.Attoparsec.ByteString.Char8
+-    Data.Attoparsec.Combinator
+-
+-  other-modules:
+-    Data.Attoparsec
+-    Data.Attoparsec.ByteString.Buffer
+-    Data.Attoparsec.ByteString.FastSet
+-    Data.Attoparsec.ByteString.Internal
+-    Data.Attoparsec.Internal
+-    Data.Attoparsec.Internal.Fhthagn
+-    Data.Attoparsec.Internal.Types
+-    Data.Attoparsec.Number
+-
+-  ghc-options:          -funbox-strict-fields -Wall -fwarn-tabs -O2
+-
+-  ghc-options: -Wall
+-  if impl(ghc >= 8.0)
+-    ghc-options: -Wcompat -Wnoncanonical-monad-instances -Wnoncanonical-monadfail-instances
+-  else
+-    build-depends: semigroups ^>= 0.18.3, fail ^>= 4.9.0.0
+-
+-
+ test-suite spec
+   type:             exitcode-stdio-1.0
+   default-language: Haskell2010
+@@ -115,11 +77,10 @@
+     , hspec         ^>= 2.4.4
+     , QuickCheck    ^>= 2.11
+ 
+-  -- internal sub-lib
+   build-depends: attoparsec
+ 
+   -- Versions for the dependencies below are transitively pinned by
+-  -- dependency on haddock-library:lib:attoparsec
++  -- dependency on attoparsec
+   build-depends:
+       base
+     , bytestring
+@@ -146,7 +107,7 @@
+     haddock-library
+ 
+   -- Versions for the dependencies below are transitively pinned by
+-  -- dependency on haddock-library:lib:attoparsec
++  -- dependency on attoparsec
+   build-depends:
+       base
+ 
diff --git a/gnu/packages/patches/gnucash-disable-failing-tests.patch b/gnu/packages/patches/gnucash-disable-failing-tests.patch
new file mode 100644
index 0000000000..e0fdd86b5d
--- /dev/null
+++ b/gnu/packages/patches/gnucash-disable-failing-tests.patch
@@ -0,0 +1,39 @@
+test-stress-options.scm does not exist, and test-qof passes when run in the
+build directory after the gnucash build.
+
+diff -ur gnucash-3.3.old/gnucash/report/standard-reports/test/CMakeLists.txt gnucash-3.3/gnucash/report/standard-reports/test/CMakeLists.txt
+--- gnucash-3.3.old/gnucash/report/standard-reports/test/CMakeLists.txt	2018-10-04 09:29:00.916641417 -0400
++++ gnucash-3.3/gnucash/report/standard-reports/test/CMakeLists.txt	2018-10-04 09:30:52.962504860 -0400
+@@ -13,10 +13,6 @@
+   test-income-gst.scm
+ )
+ 
+-set(scm_test_with_textual_ports_SOURCES
+-    test-stress-options.scm
+-)
+-
+ set(GUILE_DEPENDS
+   scm-gnc-module
+   scm-app-utils
+@@ -31,9 +27,6 @@
+ 
+ if (HAVE_SRFI64)
+   gnc_add_scheme_tests("${scm_test_with_srfi64_SOURCES}")
+-  if (HAVE_TEXT_PORTS)
+-    gnc_add_scheme_tests("${scm_test_with_textual_ports_SOURCES}")
+-  endif (HAVE_TEXT_PORTS)
+ endif (HAVE_SRFI64)
+ 
+ gnc_add_scheme_tests("${scm_test_standard_reports_SOURCES}")
+diff -ur gnucash-3.3.old/libgnucash/engine/test/CMakeLists.txt gnucash-3.3/libgnucash/engine/test/CMakeLists.txt
+--- gnucash-3.3.old/libgnucash/engine/test/CMakeLists.txt	2018-10-04 09:29:00.876640751 -0400
++++ gnucash-3.3/libgnucash/engine/test/CMakeLists.txt	2018-10-05 10:46:22.542962546 -0400
+@@ -54,8 +54,6 @@
+ # This test does not run on Win32
+ if (NOT WIN32)
+   set(SOURCES ${test_qof_SOURCES} ${CMAKE_SOURCE_DIR}/common/test-core/unittest-support.c)
+-  add_engine_test(test-qof "${SOURCES}")
+-  target_compile_definitions(test-qof PRIVATE TESTPROG=test_qof)
+ 
+   set(SOURCES ${test_engine_SOURCES} ${CMAKE_SOURCE_DIR}/common/test-core/unittest-support.c)
+   add_engine_test(test-engine "${SOURCES}")
diff --git a/gnu/packages/patches/gnucash-price-quotes-perl.patch b/gnu/packages/patches/gnucash-price-quotes-perl.patch
index 982763f0ec..3101ddb007 100644
--- a/gnu/packages/patches/gnucash-price-quotes-perl.patch
+++ b/gnu/packages/patches/gnucash-price-quotes-perl.patch
@@ -1,8 +1,9 @@
 After wrapping gnc-fq-check and gnc-fq-helper we can no longer execute them
 with perl, so execute them directly instead.
 
---- gnucash-2.6.6/src/scm/price-quotes.scm.orig	2014-04-27 17:42:28.000000000 -0500
-+++ gnucash-2.6.6/src/scm/price-quotes.scm	2015-07-09 16:12:11.196218472 -0500
+diff -ur gnucash-3.2.old/libgnucash/scm/price-quotes.scm gnucash-3.2/libgnucash/scm/price-quotes.scm
+--- gnucash-3.2.old/libgnucash/scm/price-quotes.scm	2018-09-15 00:48:33.718389646 -0400
++++ gnucash-3.2/libgnucash/scm/price-quotes.scm	2018-09-15 13:51:49.249862724 -0400
 @@ -74,7 +74,7 @@
      (define (start-program)
        (if (not (string-null? gnc:*finance-quote-check*))
diff --git a/gnu/packages/patches/grub-check-error-efibootmgr.patch b/gnu/packages/patches/grub-check-error-efibootmgr.patch
index b2fd160c9a..efeb20f213 100644
--- a/gnu/packages/patches/grub-check-error-efibootmgr.patch
+++ b/gnu/packages/patches/grub-check-error-efibootmgr.patch
@@ -160,7 +160,7 @@ index 5e4cdfd..690f180 100644
  
  	  /* Try to make this image bootable using the EFI Boot Manager, if available.  */
  	  if (!efi_distributor || efi_distributor[0] == '\0')
-@@ -1887,8 +1892,11 @@ main (int argc, char *argv[])
+@@ -1887,7 +1892,10 @@ main (int argc, char *argv[])
  			  efidir_grub_dev->disk->name,
  			  (part ? ",": ""), (part ? : ""));
  	  grub_free (part);
@@ -173,4 +173,25 @@ index 5e4cdfd..690f180 100644
 +			     strerror (ret));
  	}
        break;
+
+
+Below is a followup to the patch above: the uninitialized variable could lead
+‘grub-install’ to error out when it shouldn’t (seen on an AArch64 box where
+‘grub_install_remove_efi_entries_by_distributor’ didn't have any entry to
+remove):
+
+  grub-install: error: efibootmgr failed to register the boot entry: Unknown error 65535.
+
+See <http://lists.gnu.org/archive/html/bug-grub/2018-10/msg00006.html>.
+
+--- grub-2.02/grub-core/osdep/unix/platform.c	2018-10-17 22:21:53.015284846 +0200
++++ grub-2.02/grub-core/osdep/unix/platform.c	2018-10-17 22:21:55.595271222 +0200
+@@ -85,7 +85,7 @@ grub_install_remove_efi_entries_by_distr
+   pid_t pid = grub_util_exec_pipe ((const char * []){ "efibootmgr", NULL }, &fd);
+   char *line = NULL;
+   size_t len = 0;
+-  int rc;
++  int rc = 0;
  
+   if (!pid)
+     {
diff --git a/gnu/packages/patches/hmmer-remove-cpu-specificity.patch b/gnu/packages/patches/hmmer-remove-cpu-specificity.patch
deleted file mode 100644
index ba98db4d0e..0000000000
--- a/gnu/packages/patches/hmmer-remove-cpu-specificity.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-This patch removes compilation flags which make the build for the machine
-where compilation takes place, rendering the build not reproducible.
-
-diff --git a/configure b/configure
-index 8b6aaef..49a6afc 100755
---- a/configure
-+++ b/configure
-@@ -6125,14 +6125,6 @@ fi # guess arch
- 
- if test "x$ax_gcc_arch" != x -a "x$ax_gcc_arch" != xno; then
- for arch in $ax_gcc_arch; do
--  if test "x$acx_maxopt_portable" = xyes; then # if we require portable code
--    flags="-mtune=$arch"
--    # -mcpu=$arch and m$arch generate nonportable code on every arch except
--    # x86.  And some other arches (e.g. Alpha) don't accept -mtune.  Grrr.
--    case $host_cpu in i*86|x86_64*) flags="$flags -mcpu=$arch -m$arch";; esac
--  else
--    flags="-march=$arch -mcpu=$arch -m$arch"
--  fi
-   for flag in $flags; do
-     as_CACHEVAR=`$as_echo "ax_cv_check_cflags__$flag" | $as_tr_sh`
- { $as_echo "$as_me:${as_lineno-$LINENO}: checking whether C compiler accepts $flag" >&5
diff --git a/gnu/packages/patches/icecat-CVE-2018-12383.patch b/gnu/packages/patches/icecat-CVE-2018-12383.patch
new file mode 100644
index 0000000000..17ca0f3773
--- /dev/null
+++ b/gnu/packages/patches/icecat-CVE-2018-12383.patch
@@ -0,0 +1,103 @@
+Based on upstream changeset:
+  https://hg.mozilla.org/releases/mozilla-esr60/rev/300efdbc9fe1
+but with the git binary patch and related test changes omitted,
+and adapted to apply cleanly to GNU IceCat.
+
+# HG changeset patch
+# User David Keeler <dkeeler@mozilla.com>
+# Date 1531860660 25200
+# Node ID 300efdbc9fe1f9165428c7934861033935b5abfa
+# Parent  80a4a7ef281374dbb2afda8edac54665b14b9ef8
+Bug 1475775 - Clean up old NSS DB file after upgrade if necessary. r=franziskus, r=mattn, a=RyanVM
+
+Reviewers: franziskus, mattn
+
+Bug #: 1475775
+
+Differential Revision: https://phabricator.services.mozilla.com/D2202
+
+diff --git a/security/manager/ssl/nsNSSComponent.cpp b/security/manager/ssl/nsNSSComponent.cpp
+--- a/security/manager/ssl/nsNSSComponent.cpp
++++ b/security/manager/ssl/nsNSSComponent.cpp
+@@ -1935,16 +1935,61 @@ AttemptToRenameBothPKCS11ModuleDBVersion
+   NS_NAMED_LITERAL_CSTRING(sqlModuleDBFilename, "pkcs11.txt");
+   nsresult rv = AttemptToRenamePKCS11ModuleDB(profilePath,
+                                               legacyModuleDBFilename);
+   if (NS_FAILED(rv)) {
+     return rv;
+   }
+   return AttemptToRenamePKCS11ModuleDB(profilePath, sqlModuleDBFilename);
+ }
++
++// When we changed from the old dbm database format to the newer sqlite
++// implementation, the upgrade process left behind the existing files. Suppose a
++// user had not set a password for the old key3.db (which is about 99% of
++// users). After upgrading, both the old database and the new database are
++// unprotected. If the user then sets a password for the new database, the old
++// one will not be protected. In this scenario, we should probably just remove
++// the old database (it would only be relevant if the user downgraded to a
++// version of IceCat before 58, but we have to trade this off against the
++// user's old private keys being unexpectedly unprotected after setting a
++// password).
++// This was never an issue on Android because we always used the new
++// implementation.
++static void
++MaybeCleanUpOldNSSFiles(const nsACString& profilePath)
++{
++  UniquePK11SlotInfo slot(PK11_GetInternalKeySlot());
++  if (!slot) {
++    return;
++  }
++  // Unfortunately we can't now tell the difference between "there already was a
++  // password when the upgrade happened" and "there was not a password but then
++  // the user added one after upgrading".
++  bool hasPassword = PK11_NeedLogin(slot.get()) &&
++                     !PK11_NeedUserInit(slot.get());
++  if (!hasPassword) {
++    return;
++  }
++  nsCOMPtr<nsIFile> dbFile = do_CreateInstance("@mozilla.org/file/local;1");
++  if (!dbFile) {
++    return;
++  }
++  nsresult rv = dbFile->InitWithNativePath(profilePath);
++  if (NS_FAILED(rv)) {
++    return;
++  }
++  NS_NAMED_LITERAL_CSTRING(keyDBFilename, "key3.db");
++  rv = dbFile->AppendNative(keyDBFilename);
++  if (NS_FAILED(rv)) {
++    return;
++  }
++  // Since this isn't a directory, the `recursive` argument to `Remove` is
++  // irrelevant.
++  Unused << dbFile->Remove(false);
++}
+ #endif // ifndef ANDROID
+ 
+ // Given a profile directory, attempt to initialize NSS. If nocertdb is true,
+ // (or if we don't have a profile directory) simply initialize NSS in no DB mode
+ // and return. Otherwise, first attempt to initialize in read/write mode, and
+ // then read-only mode if that fails. If both attempts fail, we may be failing
+ // to initialize an NSS DB collection that has FIPS mode enabled. Attempt to
+ // ascertain if this is the case, and if so, rename the offending PKCS#11 module
+@@ -1966,16 +2011,19 @@ InitializeNSSWithFallbacks(const nsACStr
+ 
+   // Try read/write mode. If we're in safeMode, we won't load PKCS#11 modules.
+ #ifndef ANDROID
+   PRErrorCode savedPRErrorCode1;
+ #endif // ifndef ANDROID
+   SECStatus srv = ::mozilla::psm::InitializeNSS(profilePath, false, !safeMode);
+   if (srv == SECSuccess) {
+     MOZ_LOG(gPIPNSSLog, LogLevel::Debug, ("initialized NSS in r/w mode"));
++#ifndef ANDROID
++    MaybeCleanUpOldNSSFiles(profilePath);
++#endif // ifndef ANDROID
+     return NS_OK;
+   }
+ #ifndef ANDROID
+   savedPRErrorCode1 = PR_GetError();
+   PRErrorCode savedPRErrorCode2;
+ #endif // ifndef ANDROID
+   // That failed. Try read-only mode.
+   srv = ::mozilla::psm::InitializeNSS(profilePath, true, !safeMode);
diff --git a/gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch b/gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch
deleted file mode 100644
index b776640133..0000000000
--- a/gnu/packages/patches/icecat-CVE-2018-5157-and-CVE-2018-5158.patch
+++ /dev/null
@@ -1,441 +0,0 @@
-Based on <https://hg.mozilla.org/releases/mozilla-esr52/rev/608e76ec5ba2>
-Adapted to apply cleanly to GNU IceCat.
-
-# HG changeset patch
-# User Ryan VanderMeulen <ryanvm@gmail.com>
-# Date 1523630807 14400
-# Node ID 608e76ec5ba25cec2271d2b400c7bce2d4c5ef79
-# Parent  10b7f43b536f93151201d44d304c991aa9af5d0c
-Bug 1452075 - Backport some upstream pdf.js fixes to ESR52. r=bdahl, r=yury, a=RyanVM
-
-diff --git a/browser/extensions/pdfjs/content/PdfStreamConverter.jsm b/browser/extensions/pdfjs/content/PdfStreamConverter.jsm
---- a/browser/extensions/pdfjs/content/PdfStreamConverter.jsm
-+++ b/browser/extensions/pdfjs/content/PdfStreamConverter.jsm
-@@ -24,17 +24,18 @@ const Cc = Components.classes;
- const Ci = Components.interfaces;
- const Cr = Components.results;
- const Cu = Components.utils;
- // True only if this is the version of pdf.js that is included with icecat.
- const MOZ_CENTRAL = JSON.parse('true');
- const PDFJS_EVENT_ID = 'pdf.js.message';
- const PDF_CONTENT_TYPE = 'application/pdf';
- const PREF_PREFIX = 'pdfjs';
--const PDF_VIEWER_WEB_PAGE = 'resource://pdf.js/web/viewer.html';
-+const PDF_VIEWER_ORIGIN = "resource://pdf.js";
-+const PDF_VIEWER_WEB_PAGE = "resource://pdf.js/web/viewer.html";
- const MAX_NUMBER_OF_PREFS = 50;
- const MAX_STRING_PREF_LENGTH = 128;
- 
- Cu.import('resource://gre/modules/XPCOMUtils.jsm');
- Cu.import('resource://gre/modules/Services.jsm');
- Cu.import('resource://gre/modules/NetUtil.jsm');
- 
- XPCOMUtils.defineLazyModuleGetter(this, 'NetworkManager',
-@@ -105,21 +106,25 @@ function log(aMsg) {
-   if (!getBoolPref(PREF_PREFIX + '.pdfBugEnabled', false)) {
-     return;
-   }
-   var msg = 'PdfStreamConverter.js: ' + (aMsg.join ? aMsg.join('') : aMsg);
-   Services.console.logStringMessage(msg);
-   dump(msg + '\n');
- }
- 
--function getDOMWindow(aChannel) {
-+function getDOMWindow(aChannel, aPrincipal) {
-   var requestor = aChannel.notificationCallbacks ?
-                   aChannel.notificationCallbacks :
-                   aChannel.loadGroup.notificationCallbacks;
-   var win = requestor.getInterface(Components.interfaces.nsIDOMWindow);
-+  // Ensure the window wasn't navigated to something that is not PDF.js.
-+  if (!win.document.nodePrincipal.equals(aPrincipal)) {
-+    return null;
-+  }
-   return win;
- }
- 
- function getLocalizedStrings(path) {
-   var stringBundle = Cc['@mozilla.org/intl/stringbundle;1'].
-       getService(Ci.nsIStringBundleService).
-       createBundle('chrome://pdf.js/locale/' + path);
- 
-@@ -627,31 +632,31 @@ var RangedChromeActions = (function Rang
-       data = this.dataListener.readData();
- 
-       this.dataListener.onprogress = function (loaded, total) {
-         self.domWindow.postMessage({
-           pdfjsLoadAction: 'progressiveRead',
-           loaded: loaded,
-           total: total,
-           chunk: self.dataListener.readData()
--        }, '*');
-+        }, PDF_VIEWER_ORIGIN);
-       };
-       this.dataListener.oncomplete = function () {
-         self.dataListener = null;
-       };
-     }
- 
-     this.domWindow.postMessage({
-       pdfjsLoadAction: 'supportsRangedLoading',
-       rangeEnabled: this.rangeEnabled,
-       streamingEnabled: this.streamingEnabled,
-       pdfUrl: this.pdfUrl,
-       length: this.contentLength,
-       data: data
--    }, '*');
-+    }, PDF_VIEWER_ORIGIN);
- 
-     return true;
-   };
- 
-   proto.requestDataRange = function RangedChromeActions_requestDataRange(args) {
-     if (!this.rangeEnabled) {
-       return;
-     }
-@@ -663,23 +668,23 @@ var RangedChromeActions = (function Rang
-     // errors from chrome code for non-range requests, so this doesn't
-     // seem high-pri
-     this.networkManager.requestRange(begin, end, {
-       onDone: function RangedChromeActions_onDone(args) {
-         domWindow.postMessage({
-           pdfjsLoadAction: 'range',
-           begin: args.begin,
-           chunk: args.chunk
--        }, '*');
-+        }, PDF_VIEWER_ORIGIN);
-       },
-       onProgress: function RangedChromeActions_onProgress(evt) {
-         domWindow.postMessage({
-           pdfjsLoadAction: 'rangeProgress',
-           loaded: evt.loaded,
--        }, '*');
-+        }, PDF_VIEWER_ORIGIN);
-       }
-     });
-   };
- 
-   proto.abortLoading = function RangedChromeActions_abortLoading() {
-     this.networkManager.abortAllRequests();
-     if (this.originalRequest) {
-       this.originalRequest.cancel(Cr.NS_BINDING_ABORTED);
-@@ -718,26 +723,26 @@ var StandardChromeActions = (function St
-     var self = this;
- 
-     this.dataListener.onprogress = function ChromeActions_dataListenerProgress(
-                                       loaded, total) {
-       self.domWindow.postMessage({
-         pdfjsLoadAction: 'progress',
-         loaded: loaded,
-         total: total
--      }, '*');
-+      }, PDF_VIEWER_ORIGIN);
-     };
- 
-     this.dataListener.oncomplete =
-         function StandardChromeActions_dataListenerComplete(data, errorCode) {
-       self.domWindow.postMessage({
-         pdfjsLoadAction: 'complete',
-         data: data,
-         errorCode: errorCode
--      }, '*');
-+      }, PDF_VIEWER_ORIGIN);
- 
-       self.dataListener = null;
-       self.originalRequest = null;
-     };
- 
-     return true;
-   };
- 
-@@ -972,31 +977,35 @@ PdfStreamConverter.prototype = {
-     var proxy = {
-       onStartRequest: function(request, context) {
-         listener.onStartRequest(aRequest, aContext);
-       },
-       onDataAvailable: function(request, context, inputStream, offset, count) {
-         listener.onDataAvailable(aRequest, aContext, inputStream,
-                                  offset, count);
-       },
--      onStopRequest: function(request, context, statusCode) {
--        // We get the DOM window here instead of before the request since it
--        // may have changed during a redirect.
--        var domWindow = getDOMWindow(channel);
-+      onStopRequest(request, context, statusCode) {
-+        var domWindow = getDOMWindow(channel, resourcePrincipal);
-+        if (!Components.isSuccessCode(statusCode) || !domWindow) {
-+          // The request may have been aborted and the document may have been
-+          // replaced with something that is not PDF.js, abort attaching.
-+          listener.onStopRequest(aRequest, context, statusCode);
-+          return;
-+        }
-         var actions;
-         if (rangeRequest || streamRequest) {
-           actions = new RangedChromeActions(
-             domWindow, contentDispositionFilename, aRequest,
-             rangeRequest, streamRequest, dataListener);
-         } else {
-           actions = new StandardChromeActions(
-             domWindow, contentDispositionFilename, aRequest, dataListener);
-         }
-         var requestListener = new RequestListener(actions);
--        domWindow.addEventListener(PDFJS_EVENT_ID, function(event) {
-+        domWindow.document.addEventListener(PDFJS_EVENT_ID, function(event) {
-           requestListener.receive(event);
-         }, false, true);
-         if (actions.supportsIntegratedFind()) {
-           var findEventManager = new FindEventManager(domWindow);
-           findEventManager.bind();
-         }
-         listener.onStopRequest(aRequest, aContext, statusCode);
- 
-diff --git a/browser/extensions/pdfjs/content/build/pdf.worker.js b/browser/extensions/pdfjs/content/build/pdf.worker.js
---- a/browser/extensions/pdfjs/content/build/pdf.worker.js
-+++ b/browser/extensions/pdfjs/content/build/pdf.worker.js
-@@ -41648,16 +41648,32 @@
-       var error = sharedUtil.error;
-       var info = sharedUtil.info;
-       var isArray = sharedUtil.isArray;
-       var isBool = sharedUtil.isBool;
-       var isDict = corePrimitives.isDict;
-       var isStream = corePrimitives.isStream;
-       var PostScriptLexer = corePsParser.PostScriptLexer;
-       var PostScriptParser = corePsParser.PostScriptParser;
-+      function toNumberArray(arr) {
-+        if (!Array.isArray(arr)) {
-+          return null;
-+        }
-+        var length = arr.length;
-+        for (var i = 0; i < length; i++) {
-+          if (typeof arr[i] !== 'number') {
-+            var result = new Array(length);
-+            for (var j = 0; j < length; j++) {
-+              result[j] = +arr[j];
-+            }
-+            return result;
-+          }
-+        }
-+        return arr;
-+      }
-       var PDFFunction = function PDFFunctionClosure() {
-         var CONSTRUCT_SAMPLED = 0;
-         var CONSTRUCT_INTERPOLATED = 2;
-         var CONSTRUCT_STICHED = 3;
-         var CONSTRUCT_POSTSCRIPT = 4;
-         return {
-           getSampleArray: function PDFFunction_getSampleArray(size, outputSize, bps, str) {
-             var i, ii;
-@@ -41747,43 +41763,43 @@
-                 out[index] = [
-                   arr[i],
-                   arr[i + 1]
-                 ];
-                 ++index;
-               }
-               return out;
-             }
--            var domain = dict.getArray('Domain');
--            var range = dict.getArray('Range');
-+            var domain = toNumberArray(dict.getArray('Domain'));
-+            var range = toNumberArray(dict.getArray('Range'));
-             if (!domain || !range) {
-               error('No domain or range');
-             }
-             var inputSize = domain.length / 2;
-             var outputSize = range.length / 2;
-             domain = toMultiArray(domain);
-             range = toMultiArray(range);
--            var size = dict.get('Size');
-+            var size = toNumberArray(dict.get('Size'));
-             var bps = dict.get('BitsPerSample');
-             var order = dict.get('Order') || 1;
-             if (order !== 1) {
-               // No description how cubic spline interpolation works in PDF32000:2008
-               // As in poppler, ignoring order, linear interpolation may work as good
-               info('No support for cubic spline interpolation: ' + order);
-             }
--            var encode = dict.getArray('Encode');
-+            var encode = toNumberArray(dict.getArray('Encode'));
-             if (!encode) {
-               encode = [];
-               for (var i = 0; i < inputSize; ++i) {
--                encode.push(0);
--                encode.push(size[i] - 1);
--              }
--            }
--            encode = toMultiArray(encode);
--            var decode = dict.getArray('Decode');
-+                encode.push([0, size[i] - 1]);
-+              }
-+            } else {
-+              encode = toMultiArray(encode);
-+            }
-+            var decode = toNumberArray(dict.getArray('Decode'));
-             if (!decode) {
-               decode = range;
-             } else {
-               decode = toMultiArray(decode);
-             }
-             var samples = this.getSampleArray(size, outputSize, bps, str);
-             return [
-               CONSTRUCT_SAMPLED,
-@@ -41868,22 +41884,19 @@
-                 //                    Decode_2j, Decode_2j+1)
-                 rj = interpolate(rj, 0, 1, decode[j][0], decode[j][1]);
-                 // y_j = min(max(r_j, range_2j), range_2j+1)
-                 dest[destOffset + j] = Math.min(Math.max(rj, range[j][0]), range[j][1]);
-               }
-             };
-           },
-           constructInterpolated: function PDFFunction_constructInterpolated(str, dict) {
--            var c0 = dict.getArray('C0') || [0];
--            var c1 = dict.getArray('C1') || [1];
-+            var c0 = toNumberArray(dict.getArray('C0')) || [0];
-+            var c1 = toNumberArray(dict.getArray('C1')) || [1];
-             var n = dict.get('N');
--            if (!isArray(c0) || !isArray(c1)) {
--              error('Illegal dictionary for interpolated function');
--            }
-             var length = c0.length;
-             var diff = [];
-             for (var i = 0; i < length; ++i) {
-               diff.push(c1[i] - c0[i]);
-             }
-             return [
-               CONSTRUCT_INTERPOLATED,
-               c0,
-@@ -41899,49 +41912,45 @@
-             return function constructInterpolatedFromIRResult(src, srcOffset, dest, destOffset) {
-               var x = n === 1 ? src[srcOffset] : Math.pow(src[srcOffset], n);
-               for (var j = 0; j < length; ++j) {
-                 dest[destOffset + j] = c0[j] + x * diff[j];
-               }
-             };
-           },
-           constructStiched: function PDFFunction_constructStiched(fn, dict, xref) {
--            var domain = dict.getArray('Domain');
-+            var domain = toNumberArray(dict.getArray('Domain'));
-             if (!domain) {
-               error('No domain');
-             }
-             var inputSize = domain.length / 2;
-             if (inputSize !== 1) {
-               error('Bad domain for stiched function');
-             }
-             var fnRefs = dict.get('Functions');
-             var fns = [];
-             for (var i = 0, ii = fnRefs.length; i < ii; ++i) {
--              fns.push(PDFFunction.getIR(xref, xref.fetchIfRef(fnRefs[i])));
--            }
--            var bounds = dict.getArray('Bounds');
--            var encode = dict.getArray('Encode');
-+              fns.push(PDFFunction.parse(xref, xref.fetchIfRef(fnRefs[i])));
-+            }
-+            var bounds = toNumberArray(dict.getArray('Bounds'));
-+            var encode = toNumberArray(dict.getArray('Encode'));
-             return [
-               CONSTRUCT_STICHED,
-               domain,
-               bounds,
-               encode,
-               fns
-             ];
-           },
-           constructStichedFromIR: function PDFFunction_constructStichedFromIR(IR) {
-             var domain = IR[1];
-             var bounds = IR[2];
-             var encode = IR[3];
--            var fnsIR = IR[4];
--            var fns = [];
-+            var fns = IR[4];
-             var tmpBuf = new Float32Array(1);
--            for (var i = 0, ii = fnsIR.length; i < ii; i++) {
--              fns.push(PDFFunction.fromIR(fnsIR[i]));
--            }
-             return function constructStichedFromIRResult(src, srcOffset, dest, destOffset) {
-               var clip = function constructStichedFromIRClip(v, min, max) {
-                 if (v > max) {
-                   v = max;
-                 } else if (v < min) {
-                   v = min;
-                 }
-                 return v;
-@@ -41968,18 +41977,18 @@
-               // Prevent the value from becoming NaN as a result
-               // of division by zero (fixes issue6113.pdf).
-               tmpBuf[0] = dmin === dmax ? rmin : rmin + (v - dmin) * (rmax - rmin) / (dmax - dmin);
-               // call the appropriate function
-               fns[i](tmpBuf, 0, dest, destOffset);
-             };
-           },
-           constructPostScript: function PDFFunction_constructPostScript(fn, dict, xref) {
--            var domain = dict.getArray('Domain');
--            var range = dict.getArray('Range');
-+            var domain = toNumberArray(dict.getArray('Domain'));
-+            var range = toNumberArray(dict.getArray('Range'));
-             if (!domain) {
-               error('No domain.');
-             }
-             if (!range) {
-               error('No range.');
-             }
-             var lexer = new PostScriptLexer(fn);
-             var parser = new PostScriptParser(lexer);
-@@ -42928,18 +42937,18 @@
-           case 'IndexedCS':
-             var baseIndexedCS = IR[1];
-             var hiVal = IR[2];
-             var lookup = IR[3];
-             return new IndexedCS(ColorSpace.fromIR(baseIndexedCS), hiVal, lookup);
-           case 'AlternateCS':
-             var numComps = IR[1];
-             var alt = IR[2];
--            var tintFnIR = IR[3];
--            return new AlternateCS(numComps, ColorSpace.fromIR(alt), PDFFunction.fromIR(tintFnIR));
-+            var tintFn = IR[3];
-+            return new AlternateCS(numComps, ColorSpace.fromIR(alt), tintFn);
-           case 'LabCS':
-             whitePoint = IR[1];
-             blackPoint = IR[2];
-             var range = IR[3];
-             return new LabCS(whitePoint, blackPoint, range);
-           default:
-             error('Unknown name ' + name);
-           }
-@@ -43067,22 +43076,22 @@
-               var name = xref.fetchIfRef(cs[1]);
-               numComps = 1;
-               if (isName(name)) {
-                 numComps = 1;
-               } else if (isArray(name)) {
-                 numComps = name.length;
-               }
-               alt = ColorSpace.parseToIR(cs[2], xref, res);
--              var tintFnIR = PDFFunction.getIR(xref, xref.fetchIfRef(cs[3]));
-+              var tintFn = PDFFunction.parse(xref, xref.fetchIfRef(cs[3]));
-               return [
-                 'AlternateCS',
-                 numComps,
-                 alt,
--                tintFnIR
-+                tintFn
-               ];
-             case 'Lab':
-               params = xref.fetchIfRef(cs[1]);
-               whitePoint = params.getArray('WhitePoint');
-               blackPoint = params.getArray('BlackPoint');
-               var range = params.getArray('Range');
-               return [
-                 'LabCS',
-@@ -52483,9 +52492,9 @@
-         initializeWorker();
-       }
-       exports.setPDFNetworkStreamClass = setPDFNetworkStreamClass;
-       exports.WorkerTask = WorkerTask;
-       exports.WorkerMessageHandler = WorkerMessageHandler;
-     }));
-   }.call(pdfjsLibs));
-   exports.WorkerMessageHandler = pdfjsLibs.pdfjsCoreWorker.WorkerMessageHandler;
--}));
-\ No newline at end of file
-+}));
-
diff --git a/gnu/packages/patches/icecat-avoid-bundled-libraries.patch b/gnu/packages/patches/icecat-avoid-bundled-libraries.patch
index 114631517a..33203b1a33 100644
--- a/gnu/packages/patches/icecat-avoid-bundled-libraries.patch
+++ b/gnu/packages/patches/icecat-avoid-bundled-libraries.patch
@@ -1,8 +1,8 @@
 Fixes needed when avoiding bundled libraries.
 
---- icecat-52.0.2/xpcom/build/moz.build.orig
-+++ icecat-52.0.2/xpcom/build/moz.build
-@@ -93,10 +93,5 @@
+--- icecat-60.2.0/xpcom/build/moz.build.orig	2018-09-13 17:46:49.000000000 -0400
++++ icecat-60.2.0/xpcom/build/moz.build	2018-09-22 04:26:50.659564554 -0400
+@@ -99,10 +99,5 @@
      '/docshell/base',
  ]
  
@@ -13,9 +13,9 @@ Fixes needed when avoiding bundled libraries.
 -
  if CONFIG['MOZ_WIDGET_TOOLKIT'] == 'cocoa':
      CXXFLAGS += CONFIG['TK_CFLAGS']
---- icecat-52.0.2/storage/moz.build.orig
-+++ icecat-52.0.2/storage/moz.build
-@@ -114,7 +114,6 @@
+--- icecat-60.2.0/storage/moz.build.orig	2018-09-13 17:51:11.000000000 -0400
++++ icecat-60.2.0/storage/moz.build	2018-09-22 04:26:50.659564554 -0400
+@@ -117,7 +117,6 @@
      DEFINES['MOZ_MEMORY_TEMP_STORE_PRAGMA'] = True
  
  LOCAL_INCLUDES += [
@@ -23,13 +23,27 @@ Fixes needed when avoiding bundled libraries.
      '/dom/base',
  ]
  
---- icecat-52.0.2/dom/indexedDB/moz.build.orig
-+++ icecat-52.0.2/dom/indexedDB/moz.build
-@@ -101,7 +101,6 @@
+--- icecat-60.2.0/dom/indexedDB/moz.build.orig	2018-09-13 17:49:42.000000000 -0400
++++ icecat-60.2.0/dom/indexedDB/moz.build	2018-09-22 04:26:50.663564574 -0400
+@@ -102,7 +102,6 @@
      CXXFLAGS += ['-Wno-error=shadow']
  
  LOCAL_INCLUDES += [
 -    '/db/sqlite3/src',
      '/dom/base',
      '/dom/storage',
-     '/dom/workers',
+     '/ipc/glue',
+--- icecat-60.2.0/media/webrtc/trunk/webrtc/base/rtc_task_queue_gn/moz.build.orig	2018-09-13 17:40:54.000000000 -0400
++++ icecat-60.2.0/media/webrtc/trunk/webrtc/base/rtc_task_queue_gn/moz.build	2018-09-23 21:33:12.319975105 -0400
+@@ -130,11 +130,6 @@
+     DEFINES["WEBRTC_POSIX"] = True
+     DEFINES["_FILE_OFFSET_BITS"] = "64"
+ 
+-    LOCAL_INCLUDES += [
+-        "/ipc/chromium/src/third_party/libevent/include/",
+-        "/ipc/chromium/src/third_party/libevent/linux/"
+-    ]
+-
+     UNIFIED_SOURCES += [
+         "/media/webrtc/trunk/webrtc/base/task_queue_libevent.cc",
+         "/media/webrtc/trunk/webrtc/base/task_queue_posix.cc"
diff --git a/gnu/packages/patches/icecat-bug-1413868-pt1.patch b/gnu/packages/patches/icecat-bug-1413868-pt1.patch
deleted file mode 100644
index 18382dc33a..0000000000
--- a/gnu/packages/patches/icecat-bug-1413868-pt1.patch
+++ /dev/null
@@ -1,663 +0,0 @@
-Based on <https://hg.mozilla.org/releases/mozilla-esr52/rev/431fa5dd4016>
-Adapted to apply cleanly to GNU IceCat.
-
-# HG changeset patch
-# User Honza Bambas <honzab.moz@firemni.cz>
-# Date 1528830658 14400
-# Node ID 431fa5dd4016bdab7e4bb0d3c4df85468fe337b0
-# Parent  e8e9e1ef79f2a18c61ec1b87cfb214c8d4960f8e
-Bug 1413868. r=valentin, a=RyanVM
-
-diff --git a/toolkit/xre/nsAppRunner.cpp b/toolkit/xre/nsAppRunner.cpp
---- a/toolkit/xre/nsAppRunner.cpp
-+++ b/toolkit/xre/nsAppRunner.cpp
-@@ -4,16 +4,17 @@
-  * file, You can obtain one at http://mozilla.org/MPL/2.0/. */
- 
- #include "mozilla/dom/ContentParent.h"
- #include "mozilla/dom/ContentChild.h"
- #include "mozilla/ipc/GeckoChildProcessHost.h"
- 
- #include "mozilla/ArrayUtils.h"
- #include "mozilla/Attributes.h"
-+#include "mozilla/FilePreferences.h"
- #include "mozilla/ChaosMode.h"
- #include "mozilla/IOInterposer.h"
- #include "mozilla/Likely.h"
- #include "mozilla/MemoryChecking.h"
- #include "mozilla/Poison.h"
- #include "mozilla/Preferences.h"
- #include "mozilla/ScopeExit.h"
- #include "mozilla/Services.h"
-@@ -4304,16 +4305,20 @@ XREMain::XRE_mainRun()
-       // Need to write out the fact that the profile has been removed and potentially
-       // that the selected/default profile changed.
-       mProfileSvc->Flush();
-     }
-   }
- 
-   mDirProvider.DoStartup();
- 
-+  // As FilePreferences need the profile directory, we must initialize right here.
-+  mozilla::FilePreferences::InitDirectoriesWhitelist();
-+  mozilla::FilePreferences::InitPrefs();
-+
-   OverrideDefaultLocaleIfNeeded();
- 
- #ifdef MOZ_CRASHREPORTER
-   nsCString userAgentLocale;
-   // Try a localized string first. This pref is always a localized string in
-   // IceCatMobile, and might be elsewhere, too.
-   if (NS_SUCCEEDED(Preferences::GetLocalizedCString("general.useragent.locale", &userAgentLocale))) {
-     CrashReporter::AnnotateCrashReport(NS_LITERAL_CSTRING("useragent_locale"), userAgentLocale);
-diff --git a/toolkit/xre/nsEmbedFunctions.cpp b/toolkit/xre/nsEmbedFunctions.cpp
---- a/toolkit/xre/nsEmbedFunctions.cpp
-+++ b/toolkit/xre/nsEmbedFunctions.cpp
-@@ -46,16 +46,17 @@
- #include "nsX11ErrorHandler.h"
- #include "nsGDKErrorHandler.h"
- #include "base/at_exit.h"
- #include "base/command_line.h"
- #include "base/message_loop.h"
- #include "base/process_util.h"
- #include "chrome/common/child_process.h"
- 
-+#include "mozilla/FilePreferences.h"
- #include "mozilla/ipc/BrowserProcessSubThread.h"
- #include "mozilla/ipc/GeckoChildProcessHost.h"
- #include "mozilla/ipc/IOThreadChild.h"
- #include "mozilla/ipc/ProcessChild.h"
- #include "ScopedXREEmbed.h"
- 
- #include "mozilla/plugins/PluginProcessChild.h"
- #include "mozilla/dom/ContentProcess.h"
-@@ -680,16 +681,18 @@ XRE_InitChildProcess(int aArgc,
-       ::SetProcessShutdownParameters(0x280 - 1, SHUTDOWN_NORETRY);
- #endif
- 
- #if defined(MOZ_SANDBOX) && defined(XP_WIN)
-       // We need to do this after the process has been initialised, as
-       // InitLoggingIfRequired may need access to prefs.
-       mozilla::sandboxing::InitLoggingIfRequired(aChildData->ProvideLogFunction);
- #endif
-+      mozilla::FilePreferences::InitDirectoriesWhitelist();
-+      mozilla::FilePreferences::InitPrefs();
- 
-       OverrideDefaultLocaleIfNeeded();
- 
- #if defined(MOZ_CRASHREPORTER)
- #if defined(MOZ_CONTENT_SANDBOX) && !defined(MOZ_WIDGET_GONK)
-       AddContentSandboxLevelAnnotation();
- #endif
- #endif
-diff --git a/xpcom/io/FilePreferences.cpp b/xpcom/io/FilePreferences.cpp
-new file mode 100644
---- /dev/null
-+++ b/xpcom/io/FilePreferences.cpp
-@@ -0,0 +1,271 @@
-+/* -*- Mode: C++; tab-width: 8; indent-tabs-mode: nil; c-basic-offset: 2 -*- */
-+/* vim: set ts=8 sts=2 et sw=2 tw=80: */
-+/* This Source Code Form is subject to the terms of the Mozilla Public
-+* License, v. 2.0. If a copy of the MPL was not distributed with this
-+* file, You can obtain one at http://mozilla.org/MPL/2.0/. */
-+
-+#include "FilePreferences.h"
-+
-+#include "mozilla/Preferences.h"
-+#include "nsAppDirectoryServiceDefs.h"
-+#include "nsDirectoryServiceDefs.h"
-+#include "nsDirectoryServiceUtils.h"
-+
-+namespace mozilla {
-+namespace FilePreferences {
-+
-+static bool sBlockUNCPaths = false;
-+typedef nsTArray<nsString> Paths;
-+
-+static Paths& PathArray()
-+{
-+  static Paths sPaths;
-+  return sPaths;
-+}
-+
-+static void AllowDirectory(char const* directory)
-+{
-+  nsCOMPtr<nsIFile> file;
-+  NS_GetSpecialDirectory(directory, getter_AddRefs(file));
-+  if (!file) {
-+    return;
-+  }
-+
-+  nsString path;
-+  if (NS_FAILED(file->GetTarget(path))) {
-+    return;
-+  }
-+
-+  // The whitelist makes sense only for UNC paths, because this code is used
-+  // to block only UNC paths, hence, no need to add non-UNC directories here
-+  // as those would never pass the check.
-+  if (!StringBeginsWith(path, NS_LITERAL_STRING("\\\\"))) {
-+    return;
-+  }
-+
-+  if (!PathArray().Contains(path)) {
-+    PathArray().AppendElement(path);
-+  }
-+}
-+
-+void InitPrefs()
-+{
-+  sBlockUNCPaths = Preferences::GetBool("network.file.disable_unc_paths", false);
-+}
-+
-+void InitDirectoriesWhitelist()
-+{
-+  // NS_GRE_DIR is the installation path where the binary resides.
-+  AllowDirectory(NS_GRE_DIR);
-+  // NS_APP_USER_PROFILE_50_DIR and NS_APP_USER_PROFILE_LOCAL_50_DIR are the two
-+  // parts of the profile we store permanent and local-specific data.
-+  AllowDirectory(NS_APP_USER_PROFILE_50_DIR);
-+  AllowDirectory(NS_APP_USER_PROFILE_LOCAL_50_DIR);
-+}
-+
-+namespace { // anon
-+
-+class Normalizer
-+{
-+public:
-+  Normalizer(const nsAString& aFilePath, const char16_t aSeparator);
-+  bool Get(nsAString& aNormalizedFilePath);
-+
-+private:
-+  bool ConsumeItem();
-+  bool ConsumeSeparator();
-+  bool IsEOF() { return mFilePathCursor == mFilePathEnd; }
-+
-+  bool ConsumeName();
-+  bool CheckParentDir();
-+  bool CheckCurrentDir();
-+
-+  nsString::const_char_iterator mFilePathCursor;
-+  nsString::const_char_iterator mFilePathEnd;
-+
-+  nsDependentSubstring mItem;
-+  char16_t const mSeparator;
-+  nsTArray<nsDependentSubstring> mStack;
-+};
-+
-+Normalizer::Normalizer(const nsAString& aFilePath, const char16_t aSeparator)
-+  : mFilePathCursor(aFilePath.BeginReading())
-+  , mFilePathEnd(aFilePath.EndReading())
-+  , mSeparator(aSeparator)
-+{
-+}
-+
-+bool Normalizer::ConsumeItem()
-+{
-+  if (IsEOF()) {
-+    return false;
-+  }
-+
-+  nsString::const_char_iterator nameBegin = mFilePathCursor;
-+  while (mFilePathCursor != mFilePathEnd) {
-+    if (*mFilePathCursor == mSeparator) {
-+      break; // don't include the separator
-+    }
-+    ++mFilePathCursor;
-+  }
-+
-+  mItem.Rebind(nameBegin, mFilePathCursor);
-+  return true;
-+}
-+
-+bool Normalizer::ConsumeSeparator()
-+{
-+  if (IsEOF()) {
-+    return false;
-+  }
-+
-+  if (*mFilePathCursor != mSeparator) {
-+    return false;
-+  }
-+
-+  ++mFilePathCursor;
-+  return true;
-+}
-+
-+bool Normalizer::Get(nsAString& aNormalizedFilePath)
-+{
-+  aNormalizedFilePath.Truncate();
-+
-+  if (IsEOF()) {
-+    return true;
-+  }
-+  if (ConsumeSeparator()) {
-+    aNormalizedFilePath.Append(mSeparator);
-+  }
-+
-+  if (IsEOF()) {
-+    return true;
-+  }
-+  if (ConsumeSeparator()) {
-+    aNormalizedFilePath.Append(mSeparator);
-+  }
-+
-+  while (!IsEOF()) {
-+    if (!ConsumeName()) {
-+      return false;
-+    }
-+  }
-+
-+  for (auto const& name : mStack) {
-+    aNormalizedFilePath.Append(name);
-+  }
-+
-+  return true;
-+}
-+
-+bool Normalizer::ConsumeName()
-+{
-+  if (!ConsumeItem()) {
-+    return true;
-+  }
-+
-+  if (CheckCurrentDir()) {
-+    return true;
-+  }
-+
-+  if (CheckParentDir()) {
-+    if (!mStack.Length()) {
-+      // This means there are more \.. than valid names
-+      return false;
-+    }
-+
-+    mStack.RemoveElementAt(mStack.Length() - 1);
-+    return true;
-+  }
-+
-+  if (mItem.IsEmpty()) {
-+    // this means an empty name (a lone slash), which is illegal
-+    return false;
-+  }
-+
-+  if (ConsumeSeparator()) {
-+    mItem.Rebind(mItem.BeginReading(), mFilePathCursor);
-+  }
-+  mStack.AppendElement(mItem);
-+
-+  return true;
-+}
-+
-+bool Normalizer::CheckCurrentDir()
-+{
-+  if (mItem == NS_LITERAL_STRING(".")) {
-+    ConsumeSeparator();
-+    // EOF is acceptable
-+    return true;
-+  }
-+
-+  return false;
-+}
-+
-+bool Normalizer::CheckParentDir()
-+{
-+  if (mItem == NS_LITERAL_STRING("..")) {
-+    ConsumeSeparator();
-+    // EOF is acceptable
-+    return true;
-+  }
-+
-+  return false;
-+}
-+
-+} // anon
-+
-+bool IsBlockedUNCPath(const nsAString& aFilePath)
-+{
-+  if (!sBlockUNCPaths) {
-+    return false;
-+  }
-+
-+  if (!StringBeginsWith(aFilePath, NS_LITERAL_STRING("\\\\"))) {
-+    return false;
-+  }
-+
-+  nsAutoString normalized;
-+  if (!Normalizer(aFilePath, L'\\').Get(normalized)) {
-+    // Broken paths are considered invalid and thus inaccessible
-+    return true;
-+  }
-+
-+  for (const auto& allowedPrefix : PathArray()) {
-+    if (StringBeginsWith(normalized, allowedPrefix)) {
-+      if (normalized.Length() == allowedPrefix.Length()) {
-+        return false;
-+      }
-+      if (normalized[allowedPrefix.Length()] == L'\\') {
-+        return false;
-+      }
-+
-+      // When we are here, the path has a form "\\path\prefixevil"
-+      // while we have an allowed prefix of "\\path\prefix".
-+      // Note that we don't want to add a slash to the end of a prefix
-+      // so that opening the directory (no slash at the end) still works.
-+      break;
-+    }
-+  }
-+
-+  return true;
-+}
-+
-+void testing::SetBlockUNCPaths(bool aBlock)
-+{
-+  sBlockUNCPaths = aBlock;
-+}
-+
-+void testing::AddDirectoryToWhitelist(nsAString const & aPath)
-+{
-+  PathArray().AppendElement(aPath);
-+}
-+
-+bool testing::NormalizePath(nsAString const & aPath, nsAString & aNormalized)
-+{
-+  Normalizer normalizer(aPath, L'\\');
-+  return normalizer.Get(aNormalized);
-+}
-+
-+} // ::FilePreferences
-+} // ::mozilla
-diff --git a/xpcom/io/FilePreferences.h b/xpcom/io/FilePreferences.h
-new file mode 100644
---- /dev/null
-+++ b/xpcom/io/FilePreferences.h
-@@ -0,0 +1,25 @@
-+/* -*- Mode: C++; tab-width: 8; indent-tabs-mode: nil; c-basic-offset: 2 -*- */
-+/* vim: set ts=8 sts=2 et sw=2 tw=80: */
-+/* This Source Code Form is subject to the terms of the Mozilla Public
-+* License, v. 2.0. If a copy of the MPL was not distributed with this
-+* file, You can obtain one at http://mozilla.org/MPL/2.0/. */
-+
-+#include "nsIObserver.h"
-+
-+namespace mozilla {
-+namespace FilePreferences {
-+
-+void InitPrefs();
-+void InitDirectoriesWhitelist();
-+bool IsBlockedUNCPath(const nsAString& aFilePath);
-+
-+namespace testing {
-+
-+void SetBlockUNCPaths(bool aBlock);
-+void AddDirectoryToWhitelist(nsAString const& aPath);
-+bool NormalizePath(nsAString const & aPath, nsAString & aNormalized);
-+
-+}
-+
-+} // FilePreferences
-+} // mozilla
-diff --git a/xpcom/io/moz.build b/xpcom/io/moz.build
---- a/xpcom/io/moz.build
-+++ b/xpcom/io/moz.build
-@@ -79,24 +79,26 @@ EXPORTS += [
-     'nsUnicharInputStream.h',
-     'nsWildCard.h',
-     'SlicedInputStream.h',
-     'SpecialSystemDirectory.h',
- ]
- 
- EXPORTS.mozilla += [
-     'Base64.h',
-+    'FilePreferences.h',
-     'SnappyCompressOutputStream.h',
-     'SnappyFrameUtils.h',
-     'SnappyUncompressInputStream.h',
- ]
- 
- UNIFIED_SOURCES += [
-     'Base64.cpp',
-     'crc32c.c',
-+    'FilePreferences.cpp',
-     'nsAnonymousTemporaryFile.cpp',
-     'nsAppFileLocationProvider.cpp',
-     'nsBinaryStream.cpp',
-     'nsDirectoryService.cpp',
-     'nsEscape.cpp',
-     'nsInputStreamTee.cpp',
-     'nsIOUtil.cpp',
-     'nsLinebreakConverter.cpp',
-diff --git a/xpcom/io/nsLocalFileWin.cpp b/xpcom/io/nsLocalFileWin.cpp
---- a/xpcom/io/nsLocalFileWin.cpp
-+++ b/xpcom/io/nsLocalFileWin.cpp
-@@ -41,16 +41,17 @@
- #include  <stdio.h>
- #include  <stdlib.h>
- #include  <mbstring.h>
- 
- #include "nsXPIDLString.h"
- #include "prproces.h"
- #include "prlink.h"
- 
-+#include "mozilla/FilePreferences.h"
- #include "mozilla/Mutex.h"
- #include "SpecialSystemDirectory.h"
- 
- #include "nsTraceRefcnt.h"
- #include "nsXPCOMCIDInternal.h"
- #include "nsThreadUtils.h"
- #include "nsXULAppAPI.h"
- 
-@@ -1162,16 +1163,20 @@ nsLocalFile::InitWithPath(const nsAStrin
-   char16_t secondChar = *(++begin);
- 
-   // just do a sanity check.  if it has any forward slashes, it is not a Native path
-   // on windows.  Also, it must have a colon at after the first char.
-   if (FindCharInReadable(L'/', begin, end)) {
-     return NS_ERROR_FILE_UNRECOGNIZED_PATH;
-   }
- 
-+  if (FilePreferences::IsBlockedUNCPath(aFilePath)) {
-+    return NS_ERROR_FILE_ACCESS_DENIED;
-+  }
-+
-   if (secondChar != L':' && (secondChar != L'\\' || firstChar != L'\\')) {
-     return NS_ERROR_FILE_UNRECOGNIZED_PATH;
-   }
- 
-   if (secondChar == L':') {
-     // Make sure we have a valid drive, later code assumes the drive letter
-     // is a single char a-z or A-Z.
-     if (PathGetDriveNumberW(aFilePath.Data()) == -1) {
-@@ -1974,16 +1979,20 @@ nsLocalFile::CopySingleFile(nsIFile* aSo
-     bool path1Remote, path2Remote;
-     if (!IsRemoteFilePath(filePath.get(), path1Remote) ||
-         !IsRemoteFilePath(destPath.get(), path2Remote) ||
-         path1Remote || path2Remote) {
-       dwCopyFlags |= COPY_FILE_NO_BUFFERING;
-     }
-   }
- 
-+  if (FilePreferences::IsBlockedUNCPath(destPath)) {
-+    return NS_ERROR_FILE_ACCESS_DENIED;
-+  }
-+
-   if (!move) {
-     copyOK = ::CopyFileExW(filePath.get(), destPath.get(), nullptr,
-                            nullptr, nullptr, dwCopyFlags);
-   } else {
-     copyOK = ::MoveFileExW(filePath.get(), destPath.get(),
-                            MOVEFILE_REPLACE_EXISTING);
- 
-     // Check if copying the source file to a different volume,
-diff --git a/xpcom/tests/gtest/TestFilePreferencesWin.cpp b/xpcom/tests/gtest/TestFilePreferencesWin.cpp
-new file mode 100644
---- /dev/null
-+++ b/xpcom/tests/gtest/TestFilePreferencesWin.cpp
-@@ -0,0 +1,141 @@
-+#include "gtest/gtest.h"
-+
-+#include "mozilla/FilePreferences.h"
-+#include "nsIFile.h"
-+#include "nsXPCOMCID.h"
-+
-+TEST(FilePreferencesWin, Normalization)
-+{
-+  nsAutoString normalized;
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("foo"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("foo"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\foo"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\foo"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\foo"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("foo\\some"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("foo\\some"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\.\\foo"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\foo"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\."), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\.\\"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\.\\."), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\bar"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\foo\\bar"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\bar\\"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\foo\\bar\\"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\bar\\."), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\foo\\bar\\"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\bar\\.\\"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\foo\\bar\\"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\bar\\..\\"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\foo\\"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\bar\\.."), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\foo\\"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\..\\bar\\..\\"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\..\\bar"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\bar"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\bar\\..\\..\\"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\"));
-+
-+  mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\bar\\.\\..\\.\\..\\"), normalized);
-+  ASSERT_TRUE(normalized == NS_LITERAL_STRING("\\\\"));
-+
-+  bool result;
-+
-+  result = mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\.."), normalized);
-+  ASSERT_FALSE(result);
-+
-+  result = mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\..\\"), normalized);
-+  ASSERT_FALSE(result);
-+
-+  result = mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\.\\..\\"), normalized);
-+  ASSERT_FALSE(result);
-+
-+  result = mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\\\bar"), normalized);
-+  ASSERT_FALSE(result);
-+
-+  result = mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\foo\\bar\\..\\..\\..\\..\\"), normalized);
-+  ASSERT_FALSE(result);
-+
-+  result = mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\\\"), normalized);
-+  ASSERT_FALSE(result);
-+
-+  result = mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\.\\\\"), normalized);
-+  ASSERT_FALSE(result);
-+
-+  result = mozilla::FilePreferences::testing::NormalizePath(
-+    NS_LITERAL_STRING("\\\\..\\\\"), normalized);
-+  ASSERT_FALSE(result);
-+}
-+
-+TEST(FilePreferencesWin, AccessUNC)
-+{
-+  nsCOMPtr<nsIFile> lf = do_CreateInstance(NS_LOCAL_FILE_CONTRACTID);
-+
-+  nsresult rv;
-+
-+  mozilla::FilePreferences::testing::SetBlockUNCPaths(false);
-+
-+  rv = lf->InitWithPath(NS_LITERAL_STRING("\\\\nice\\..\\evil\\share"));
-+  ASSERT_EQ(rv, NS_OK);
-+
-+  mozilla::FilePreferences::testing::SetBlockUNCPaths(true);
-+
-+  rv = lf->InitWithPath(NS_LITERAL_STRING("\\\\nice\\..\\evil\\share"));
-+  ASSERT_EQ(rv, NS_ERROR_FILE_ACCESS_DENIED);
-+
-+  mozilla::FilePreferences::testing::AddDirectoryToWhitelist(NS_LITERAL_STRING("\\\\nice"));
-+
-+  rv = lf->InitWithPath(NS_LITERAL_STRING("\\\\nice\\share"));
-+  ASSERT_EQ(rv, NS_OK);
-+
-+  rv = lf->InitWithPath(NS_LITERAL_STRING("\\\\nice\\..\\evil\\share"));
-+  ASSERT_EQ(rv, NS_ERROR_FILE_ACCESS_DENIED);
-+}
-diff --git a/xpcom/tests/gtest/moz.build b/xpcom/tests/gtest/moz.build
---- a/xpcom/tests/gtest/moz.build
-+++ b/xpcom/tests/gtest/moz.build
-@@ -51,16 +51,21 @@ UNIFIED_SOURCES += [
- if CONFIG['MOZ_DEBUG'] and CONFIG['OS_ARCH'] not in ('WINNT') and CONFIG['OS_TARGET'] != 'Android':
-     # FIXME bug 523392: TestDeadlockDetector doesn't like Windows
-     # Bug 1054249: Doesn't work on Android
-     UNIFIED_SOURCES += [
-         'TestDeadlockDetector.cpp',
-         'TestDeadlockDetectorScalability.cpp',
-     ]
- 
-+if CONFIG['OS_TARGET'] == 'WINNT':
-+    UNIFIED_SOURCES += [
-+        'TestFilePreferencesWin.cpp',
-+    ]
-+
- if CONFIG['WRAP_STL_INCLUDES'] and not CONFIG['CLANG_CL']:
-     UNIFIED_SOURCES += [
-         'TestSTLWrappers.cpp',
-     ]
- 
- # Compile TestAllocReplacement separately so Windows headers don't pollute
- # the global namespace for other files.
- SOURCES += [
-
diff --git a/gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch b/gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch
new file mode 100644
index 0000000000..94c211b797
--- /dev/null
+++ b/gnu/packages/patches/icecat-use-system-graphite2+harfbuzz.patch
@@ -0,0 +1,226 @@
+Allow building against system-wide graphite2/harfbuzz.
+See <https://bugzilla.mozilla.org/show_bug.cgi?id=847568>
+Based on:
+  https://svnweb.freebsd.org/ports/head/www/firefox-esr/files/patch-bug847568?revision=472833&view=co
+Modified for use with patch -p1, and to apply cleanly to GNU IceCat.
+
+--- icecat-60.2.0/config/system-headers.mozbuild
++++ icecat-60.2.0/config/system-headers.mozbuild
+@@ -1311,6 +1311,19 @@
+         'pixman.h',
+     ]
+ 
++if CONFIG['MOZ_SYSTEM_GRAPHITE2']:
++    system_headers += [
++        'graphite2/Font.h',
++        'graphite2/Segment.h',
++    ]
++
++if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
++    system_headers += [
++        'harfbuzz/hb-glib.h',
++        'harfbuzz/hb-ot.h',
++        'harfbuzz/hb.h',
++    ]
++
+ if CONFIG['MOZ_SYSTEM_LIBVPX']:
+     system_headers += [
+         'vpx_mem/vpx_mem.h',
+--- icecat-60.2.0/dom/base/moz.build
++++ icecat-60.2.0/dom/base/moz.build
+@@ -474,6 +474,9 @@
+ if CONFIG['MOZ_X11']:
+     CXXFLAGS += CONFIG['TK_CFLAGS']
+ 
++if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
++    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
++
+ GENERATED_FILES += [
+     'PropertyUseCounterMap.inc',
+     'UseCounterList.h',
+--- icecat-60.2.0/gfx/graphite2/moz-gr-update.sh
++++ icecat-60.2.0/gfx/graphite2/moz-gr-update.sh
+@@ -1,6 +1,7 @@
+ #!/bin/bash
+ 
+ # Script used to update the Graphite2 library in the mozilla source tree
++# and bump version for --with-system-graphite2
+ 
+ # This script lives in gfx/graphite2, along with the library source,
+ # but must be run from the top level of the mozilla-central tree.
+@@ -37,12 +38,16 @@ echo "See" $0 "for update procedure." >> gfx/graphite2/README.mozilla
+ #find gfx/graphite2/ -name "*.cpp" -exec perl -p -i -e "s/<cstdio>/<stdio.h>/;s/Windows.h/windows.h/;" {} \;
+ #find gfx/graphite2/ -name "*.h" -exec perl -p -i -e "s/<cstdio>/<stdio.h>/;s/Windows.h/windows.h/;" {} \;
+ 
++# chase version for --with-system-graphite2
++perl -p -i -e "s/[0-9]+\,[0-9]+\,[0-9]+/$RELEASE/ and tr/./,/ \
++  if /GR2_VERSION_REQUIRE/" old-configure.in
++
+ # summarize what's been touched
+ echo Updated to $RELEASE.
+ echo Here is what changed in the gfx/graphite2 directory:
+ echo
+ 
+-hg stat gfx/graphite2
++hg stat old-configure.in gfx/graphite2
+ 
+ echo
+ echo If gfx/graphite2/src/files.mk has changed, please make corresponding
+--- icecat-60.2.0/gfx/moz.build
++++ icecat-60.2.0/gfx/moz.build
+@@ -10,6 +10,12 @@ with Files('**'):
+ if CONFIG['MOZ_TREE_CAIRO']:
+     DIRS += ['cairo']
+ 
++if not CONFIG['MOZ_SYSTEM_GRAPHITE2']:
++    DIRS += ['graphite2/src' ]
++
++if not CONFIG['MOZ_SYSTEM_HARFBUZZ']:
++    DIRS += ['harfbuzz/src']
++
+ DIRS += [
+     '2d',
+     'ycbcr',
+@@ -18,8 +24,6 @@ DIRS += [
+     'qcms',
+     'gl',
+     'layers',
+-    'graphite2/src',
+-    'harfbuzz/src',
+     'ots/src',
+     'thebes',
+     'ipc',
+--- icecat-60.2.0/gfx/skia/generate_mozbuild.py
++++ icecat-60.2.0/gfx/skia/generate_mozbuild.py
+@@ -148,6 +148,9 @@
+         '-Wno-unused-private-field',
+     ]
+ 
++if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
++    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
++
+ if CONFIG['MOZ_WIDGET_TOOLKIT'] in ('gtk3', 'android'):
+     CXXFLAGS += CONFIG['MOZ_CAIRO_CFLAGS']
+     CXXFLAGS += CONFIG['CAIRO_FT_CFLAGS']
+--- icecat-60.2.0/gfx/skia/moz.build
++++ icecat-60.2.0/gfx/skia/moz.build
+@@ -822,6 +822,9 @@
+         '-Wno-unused-private-field',
+     ]
+ 
++if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
++    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
++
+ if CONFIG['MOZ_WIDGET_TOOLKIT'] in ('gtk3', 'android'):
+     CXXFLAGS += CONFIG['MOZ_CAIRO_CFLAGS']
+     CXXFLAGS += CONFIG['CAIRO_FT_CFLAGS']
+--- icecat-60.2.0/gfx/thebes/moz.build
++++ icecat-60.2.0/gfx/thebes/moz.build
+@@ -272,7 +272,13 @@
+ 
+ LOCAL_INCLUDES += CONFIG['SKIA_INCLUDES']
+ 
+-DEFINES['GRAPHITE2_STATIC'] = True
++if CONFIG['MOZ_SYSTEM_GRAPHITE2']:
++    CXXFLAGS += CONFIG['MOZ_GRAPHITE2_CFLAGS']
++else:
++    DEFINES['GRAPHITE2_STATIC'] = True
++
++if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
++    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
+ 
+ if CONFIG['CC_TYPE'] == 'clang':
+     # Suppress warnings from Skia header files.
+--- icecat-60.2.0/intl/unicharutil/util/moz.build
++++ icecat-60.2.0/intl/unicharutil/util/moz.build
+@@ -25,4 +25,7 @@ UNIFIED_SOURCES += [
+     'nsUnicodeProperties.cpp',
+ ]
+ 
++if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
++    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
++
+ FINAL_LIBRARY = 'xul'
+--- icecat-60.2.0/netwerk/dns/moz.build
++++ icecat-60.2.0/netwerk/dns/moz.build
+@@ -76,3 +76,6 @@
+ 
+ if CONFIG['CC_TYPE'] in ('clang', 'gcc'):
+     CXXFLAGS += ['-Wno-error=shadow']
++
++if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
++    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
+--- icecat-60.2.0/old-configure.in
++++ icecat-60.2.0/old-configure.in
+@@ -3995,6 +3995,27 @@
+ AC_SUBST(MOZ_LINUX_32_SSE2_STARTUP_ERROR)
+ 
+ dnl ========================================================
++dnl Check for graphite2
++dnl ========================================================
++if test -n "$MOZ_SYSTEM_GRAPHITE2"; then
++    dnl graphite2.pc has bogus version, check manually
++    _SAVE_CFLAGS=$CFLAGS
++    CFLAGS="$CFLAGS $MOZ_GRAPHITE2_CFLAGS"
++    AC_TRY_COMPILE([ #include <graphite2/Font.h>
++                     #define GR2_VERSION_REQUIRE(major,minor,bugfix)  \
++                             ( GR2_VERSION_MAJOR * 10000 + GR2_VERSION_MINOR \
++                               * 100 + GR2_VERSION_BUGFIX >= \
++                               (major) * 10000 + (minor) * 100 + (bugfix) )
++                   ], [
++                     #if !GR2_VERSION_REQUIRE(1,3,10)
++                     #error "Insufficient graphite2 version."
++                     #endif
++                   ], [],
++                   [AC_MSG_ERROR([--with-system-graphite2 requested but no working libgraphite2 found])])
++    CFLAGS=$_SAVE_CFLAGS
++fi
++
++dnl ========================================================
+ dnl Check for pixman and cairo
+ dnl ========================================================
+ 
+--- icecat-60.2.0/toolkit/library/moz.build
++++ icecat-60.2.0/toolkit/library/moz.build
+@@ -235,6 +235,12 @@
+ if CONFIG['MOZ_SYSTEM_PNG']:
+     OS_LIBS += CONFIG['MOZ_PNG_LIBS']
+ 
++if CONFIG['MOZ_SYSTEM_GRAPHITE2']:
++    OS_LIBS += CONFIG['MOZ_GRAPHITE2_LIBS']
++
++if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
++    OS_LIBS += CONFIG['MOZ_HARFBUZZ_LIBS']
++
+ if CONFIG['MOZ_SYSTEM_HUNSPELL']:
+     OS_LIBS += CONFIG['MOZ_HUNSPELL_LIBS']
+ 
+--- icecat-60.2.0/toolkit/moz.configure
++++ icecat-60.2.0/toolkit/moz.configure
+@@ -1051,6 +1051,26 @@
+ add_old_configure_assignment('FT2_CFLAGS',
+                              ft2_info.cflags)
+ 
++# Graphite2
++# ==============================================================
++option('--with-system-graphite2',
++       help="Use system graphite2 (located with pkgconfig)")
++
++system_graphite2 = pkg_check_modules('MOZ_GRAPHITE2', 'graphite2',
++                                     when='--with-system-graphite2')
++
++set_config('MOZ_SYSTEM_GRAPHITE2', depends_if(system_graphite2)(lambda _: True))
++
++# HarfBuzz
++# ==============================================================
++option('--with-system-harfbuzz',
++       help="Use system harfbuzz (located with pkgconfig)")
++
++system_harfbuzz = pkg_check_modules('MOZ_HARFBUZZ', 'harfbuzz >= 1.7.4',
++                                    when='--with-system-harfbuzz')
++
++set_config('MOZ_SYSTEM_HARFBUZZ', depends_if(system_harfbuzz)(lambda _: True))
++
+ # Mortar
+ # ==============================================================
+ option('--enable-mortar', help='Enable mortar extension')
diff --git a/gnu/packages/patches/icecat-use-system-graphite2.patch b/gnu/packages/patches/icecat-use-system-graphite2.patch
deleted file mode 100644
index 188fba2bc9..0000000000
--- a/gnu/packages/patches/icecat-use-system-graphite2.patch
+++ /dev/null
@@ -1,248 +0,0 @@
-Copied from <https://reviewboard.mozilla.org/r/90218/diff/4>
-See <https://bugzilla.mozilla.org/show_bug.cgi?id=847568>
-
-diff --git a/config/Makefile.in b/config/Makefile.in
---- a/config/Makefile.in
-+++ b/config/Makefile.in
-@@ -36,16 +36,17 @@ ifdef WRAP_SYSTEM_INCLUDES
- export-preqs = \
-   $(call mkdir_deps,system_wrappers) \
-   $(NULL)
- 
- export:: $(export-preqs)
- 	$(PYTHON) -m mozbuild.action.preprocessor $(DEFINES) $(ACDEFINES) \
- 		-DMOZ_TREE_CAIRO=$(MOZ_TREE_CAIRO) \
- 		-DMOZ_TREE_PIXMAN=$(MOZ_TREE_PIXMAN) \
-+		-DMOZ_SYSTEM_GRAPHITE2=$(MOZ_SYSTEM_GRAPHITE2) \
- 		-DMOZ_SYSTEM_HARFBUZZ=$(MOZ_SYSTEM_HARFBUZZ) \
- 		-DMOZ_SYSTEM_HUNSPELL=$(MOZ_SYSTEM_HUNSPELL) \
- 		-DMOZ_SYSTEM_BZ2=$(MOZ_SYSTEM_BZ2) \
- 		-DMOZ_SYSTEM_ZLIB=$(MOZ_SYSTEM_ZLIB) \
- 		-DMOZ_SYSTEM_PNG=$(MOZ_SYSTEM_PNG) \
- 		-DMOZ_SYSTEM_JPEG=$(MOZ_SYSTEM_JPEG) \
- 		-DMOZ_SYSTEM_LIBEVENT=$(MOZ_SYSTEM_LIBEVENT) \
- 		-DMOZ_SYSTEM_LIBVPX=$(MOZ_SYSTEM_LIBVPX) \
-diff --git a/config/system-headers b/config/system-headers
---- a/config/system-headers
-+++ b/config/system-headers
-@@ -1260,16 +1260,20 @@ zlib.h
- #ifdef MOZ_ENABLE_STARTUP_NOTIFICATION
- libsn/sn.h
- libsn/sn-common.h
- libsn/sn-launchee.h
- libsn/sn-launcher.h
- libsn/sn-monitor.h
- libsn/sn-util.h
- #endif
-+#if MOZ_SYSTEM_GRAPHITE2==1
-+graphite2/Font.h
-+graphite2/Segment.h
-+#endif
- #if MOZ_SYSTEM_HARFBUZZ==1
- harfbuzz/hb-glib.h
- harfbuzz/hb-ot.h
- harfbuzz/hb.h
- #endif
- #if MOZ_SYSTEM_HUNSPELL==1
- hunspell.hxx
- #endif
-diff --git a/gfx/graphite2/moz-gr-update.sh b/gfx/graphite2/moz-gr-update.sh
---- a/gfx/graphite2/moz-gr-update.sh
-+++ b/gfx/graphite2/moz-gr-update.sh
-@@ -1,11 +1,12 @@
- #!/bin/bash
- 
- # Script used to update the Graphite2 library in the mozilla source tree
-+# and bump version for --with-system-graphite2
- 
- # This script lives in gfx/graphite2, along with the library source,
- # but must be run from the top level of the mozilla-central tree.
- 
- # Run as
- #
- #    ./gfx/graphite2/moz-gr-update.sh RELEASE
- #
-@@ -32,22 +33,26 @@ echo "This directory contains the Graphi
- echo "$TARBALL" >> gfx/graphite2/README.mozilla
- echo ""
- echo "See" $0 "for update procedure." >> gfx/graphite2/README.mozilla
- 
- # fix up includes because of bug 721839 (cstdio) and bug 803066 (Windows.h)
- #find gfx/graphite2/ -name "*.cpp" -exec perl -p -i -e "s/<cstdio>/<stdio.h>/;s/Windows.h/windows.h/;" {} \;
- #find gfx/graphite2/ -name "*.h" -exec perl -p -i -e "s/<cstdio>/<stdio.h>/;s/Windows.h/windows.h/;" {} \;
- 
-+# chase version for --with-system-graphite2
-+perl -p -i -e "s/[0-9]+\,[0-9]+\,[0-9]+/$RELEASE/ and tr/./,/ \
-+  if /GR2_VERSION_REQUIRE/" old-configure.in
-+
- # summarize what's been touched
- echo Updated to $RELEASE.
- echo Here is what changed in the gfx/graphite2 directory:
- echo
- 
--hg stat gfx/graphite2
-+hg stat old-configure.in gfx/graphite2
- 
- echo
- echo If gfx/graphite2/src/files.mk has changed, please make corresponding
- echo changes to gfx/graphite2/src/moz.build
- echo
- 
- echo
- echo Now use hg commands to create a patch for the mozilla tree.
-diff --git a/gfx/moz.build b/gfx/moz.build
---- a/gfx/moz.build
-+++ b/gfx/moz.build
-@@ -2,28 +2,30 @@
- # vim: set filetype=python:
- # This Source Code Form is subject to the terms of the Mozilla Public
- # License, v. 2.0. If a copy of the MPL was not distributed with this
- # file, You can obtain one at http://mozilla.org/MPL/2.0/.
- 
- if CONFIG['MOZ_TREE_CAIRO']:
-     DIRS += ['cairo']
- 
-+if not CONFIG['MOZ_SYSTEM_GRAPHITE2']:
-+    DIRS += ['graphite2/src' ]
-+
- if not CONFIG['MOZ_SYSTEM_HARFBUZZ']:
-     DIRS += ['harfbuzz/src']
- 
- DIRS += [
-     '2d',
-     'ycbcr',
-     'angle',
-     'src',
-     'qcms',
-     'gl',
-     'layers',
--    'graphite2/src',
-     'ots/src',
-     'thebes',
-     'ipc',
-     'vr',
-     'config',
- ]
- 
- if CONFIG['MOZ_ENABLE_SKIA']:
-diff --git a/gfx/thebes/moz.build b/gfx/thebes/moz.build
---- a/gfx/thebes/moz.build
-+++ b/gfx/thebes/moz.build
-@@ -261,16 +261,19 @@ if CONFIG['MOZ_WIDGET_TOOLKIT'] in ('and
-     CXXFLAGS += CONFIG['CAIRO_FT_CFLAGS']
- 
- if CONFIG['MOZ_WIDGET_TOOLKIT'] in ('gtk2', 'gtk3'):
-     CXXFLAGS += CONFIG['MOZ_PANGO_CFLAGS']
- 
- LOCAL_INCLUDES += CONFIG['SKIA_INCLUDES']
- LOCAL_INCLUDES += ['/media/libyuv/include']
- 
--DEFINES['GRAPHITE2_STATIC'] = True
-+if CONFIG['MOZ_SYSTEM_GRAPHITE2']:
-+    CXXFLAGS += CONFIG['MOZ_GRAPHITE2_CFLAGS']
-+else:
-+    DEFINES['GRAPHITE2_STATIC'] = True
- 
- if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
-     CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
- 
- if CONFIG['CLANG_CXX']:
-     # Suppress warnings from Skia header files.
-     SOURCES['gfxPlatform.cpp'].flags += ['-Wno-implicit-fallthrough']
-diff --git a/moz.configure b/moz.configure
---- a/moz.configure
-+++ b/moz.configure
-@@ -260,16 +260,28 @@ def extra_programs(target):
- 
- check_prog('DSYMUTIL', delayed_getattr(extra_programs, 'DSYMUTIL'),
-            allow_missing=True)
- check_prog('GENISOIMAGE', delayed_getattr(extra_programs, 'GENISOIMAGE'),
-            allow_missing=True)
- check_prog('RPMBUILD', delayed_getattr(extra_programs, 'RPMBUILD'),
-            allow_missing=True)
- 
-+option('--with-system-graphite2',
-+       help="Use system graphite2 (located with pkgconfig)")
-+
-+@depends('--with-system-graphite2', compile_environment)
-+def check_for_graphite2(value, compile_env):
-+    return value and compile_env
-+
-+system_graphite2 = pkg_check_modules('MOZ_GRAPHITE2', 'graphite2',
-+                                    check_for_graphite2)
-+
-+set_config('MOZ_SYSTEM_GRAPHITE2', depends_if(system_graphite2)(lambda _: True))
-+
- option('--with-system-harfbuzz',
-        help="Use system harfbuzz (located with pkgconfig)")
- 
- @depends('--with-system-harfbuzz', compile_environment)
- def check_for_harfbuzz(value, compile_env):
-     return value and compile_env
- 
- system_harfbuzz = pkg_check_modules('MOZ_HARFBUZZ', 'harfbuzz >= 1.3.3',
-diff --git a/old-configure.in b/old-configure.in
---- a/old-configure.in
-+++ b/old-configure.in
-@@ -5060,16 +5060,37 @@ if test "$USE_FC_FREETYPE"; then
-         CPPFLAGS="$CPPFLAGS $FT2_CFLAGS $XCFLAGS"
-         MOZ_CHECK_HEADERS([fontconfig/fcfreetype.h], ,
-             [AC_MSG_ERROR(Can't find header fontconfig/fcfreetype.h.)], [#include <fontconfig/fontconfig.h>])
-         CPPFLAGS="$_SAVE_CPPFLAGS"
-     fi
- fi
- 
- dnl ========================================================
-+dnl Check for graphite2
-+dnl ========================================================
-+if test -n "$MOZ_SYSTEM_GRAPHITE2"; then
-+    dnl graphite2.pc has bogus version, check manually
-+    _SAVE_CFLAGS=$CFLAGS
-+    CFLAGS="$CFLAGS $MOZ_GRAPHITE2_CFLAGS"
-+    AC_TRY_COMPILE([ #include <graphite2/Font.h>
-+                     #define GR2_VERSION_REQUIRE(major,minor,bugfix)  \
-+                             ( GR2_VERSION_MAJOR * 10000 + GR2_VERSION_MINOR \
-+                               * 100 + GR2_VERSION_BUGFIX >= \
-+                               (major) * 10000 + (minor) * 100 + (bugfix) )
-+                   ], [
-+                     #if !GR2_VERSION_REQUIRE(1,3,8)
-+                     #error "Insufficient graphite2 version."
-+                     #endif
-+                   ], [],
-+                   [AC_MSG_ERROR([--with-system-graphite2 requested but no working libgraphite2 found])])
-+    CFLAGS=$_SAVE_CFLAGS
-+fi
-+
-+dnl ========================================================
- dnl Check for pixman and cairo
- dnl ========================================================
- 
- MOZ_TREE_CAIRO=1
- MOZ_ARG_ENABLE_BOOL(system-cairo,
- [  --enable-system-cairo   Use system cairo (located with pkgconfig)],
- MOZ_TREE_CAIRO=,
- MOZ_TREE_CAIRO=1 )
-diff --git a/toolkit/library/moz.build b/toolkit/library/moz.build
---- a/toolkit/library/moz.build
-+++ b/toolkit/library/moz.build
-@@ -221,16 +221,19 @@ if CONFIG['SERVO_TARGET_DIR']:
-         OS_LIBS += ['-L%s' % CONFIG['SERVO_TARGET_DIR'], '-lgeckoservo']
- 
- if CONFIG['MOZ_SYSTEM_JPEG']:
-     OS_LIBS += CONFIG['MOZ_JPEG_LIBS']
- 
- if CONFIG['MOZ_SYSTEM_PNG']:
-     OS_LIBS += CONFIG['MOZ_PNG_LIBS']
- 
-+if CONFIG['MOZ_SYSTEM_GRAPHITE2']:
-+    OS_LIBS += CONFIG['MOZ_GRAPHITE2_LIBS']
-+
- if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
-     OS_LIBS += CONFIG['MOZ_HARFBUZZ_LIBS']
- 
- if CONFIG['MOZ_SYSTEM_HUNSPELL']:
-     OS_LIBS += CONFIG['MOZ_HUNSPELL_LIBS']
- 
- if CONFIG['MOZ_SYSTEM_LIBEVENT']:
-     OS_LIBS += CONFIG['MOZ_LIBEVENT_LIBS']
-
diff --git a/gnu/packages/patches/icecat-use-system-harfbuzz.patch b/gnu/packages/patches/icecat-use-system-harfbuzz.patch
deleted file mode 100644
index 083d404c13..0000000000
--- a/gnu/packages/patches/icecat-use-system-harfbuzz.patch
+++ /dev/null
@@ -1,279 +0,0 @@
-Copied from <https://reviewboard.mozilla.org/r/35763/diff/9>
-See <https://bugzilla.mozilla.org/show_bug.cgi?id=847568>
-
-diff --git a/config/Makefile.in b/config/Makefile.in
---- a/config/Makefile.in
-+++ b/config/Makefile.in
-@@ -36,16 +36,17 @@ ifdef WRAP_SYSTEM_INCLUDES
- export-preqs = \
-   $(call mkdir_deps,system_wrappers) \
-   $(NULL)
- 
- export:: $(export-preqs)
- 	$(PYTHON) -m mozbuild.action.preprocessor $(DEFINES) $(ACDEFINES) \
- 		-DMOZ_TREE_CAIRO=$(MOZ_TREE_CAIRO) \
- 		-DMOZ_TREE_PIXMAN=$(MOZ_TREE_PIXMAN) \
-+		-DMOZ_SYSTEM_HARFBUZZ=$(MOZ_SYSTEM_HARFBUZZ) \
- 		-DMOZ_SYSTEM_HUNSPELL=$(MOZ_SYSTEM_HUNSPELL) \
- 		-DMOZ_SYSTEM_BZ2=$(MOZ_SYSTEM_BZ2) \
- 		-DMOZ_SYSTEM_ZLIB=$(MOZ_SYSTEM_ZLIB) \
- 		-DMOZ_SYSTEM_PNG=$(MOZ_SYSTEM_PNG) \
- 		-DMOZ_SYSTEM_JPEG=$(MOZ_SYSTEM_JPEG) \
- 		-DMOZ_SYSTEM_LIBEVENT=$(MOZ_SYSTEM_LIBEVENT) \
- 		-DMOZ_SYSTEM_LIBVPX=$(MOZ_SYSTEM_LIBVPX) \
- 		-DMOZ_SYSTEM_ICU=$(MOZ_SYSTEM_ICU) \
-diff --git a/config/system-headers b/config/system-headers
---- a/config/system-headers
-+++ b/config/system-headers
-@@ -1260,16 +1260,21 @@ zlib.h
- #ifdef MOZ_ENABLE_STARTUP_NOTIFICATION
- libsn/sn.h
- libsn/sn-common.h
- libsn/sn-launchee.h
- libsn/sn-launcher.h
- libsn/sn-monitor.h
- libsn/sn-util.h
- #endif
-+#if MOZ_SYSTEM_HARFBUZZ==1
-+harfbuzz/hb-glib.h
-+harfbuzz/hb-ot.h
-+harfbuzz/hb.h
-+#endif
- #if MOZ_SYSTEM_HUNSPELL==1
- hunspell.hxx
- #endif
- #if MOZ_SYSTEM_BZ2==1
- bzlib.h
- #endif
- #ifdef MOZ_ENABLE_GIO
- gio/gio.h
-diff --git a/dom/base/moz.build b/dom/base/moz.build
---- a/dom/base/moz.build
-+++ b/dom/base/moz.build
-@@ -474,16 +474,19 @@ for var in ('MOZ_B2G_RIL'):
-         DEFINES[var] = True
- 
- if CONFIG['MOZ_BUILD_APP'] in ['browser', 'mobile/android', 'xulrunner']:
-     DEFINES['HAVE_SIDEBAR'] = True
- 
- if CONFIG['MOZ_X11']:
-     CXXFLAGS += CONFIG['TK_CFLAGS']
- 
-+if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
-+    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
-+
- GENERATED_FILES += [
-     'PropertyUseCounterMap.inc',
-     'UseCounterList.h',
- ]
- 
- countermap = GENERATED_FILES['PropertyUseCounterMap.inc']
- countermap.script = 'gen-usecounters.py:property_map'
- countermap.inputs = ['UseCounters.conf']
-diff --git a/gfx/harfbuzz/README-mozilla b/gfx/harfbuzz/README-mozilla
---- a/gfx/harfbuzz/README-mozilla
-+++ b/gfx/harfbuzz/README-mozilla
-@@ -14,8 +14,13 @@ this file when updating harfbuzz, and ch
- 
- The normal approach to updating harfbuzz, therefore, is to pull the latest HB
- source into a scratch directory and do a local build; then copy the original
- sources AND the generated header mentioned above from the build directory into
- the mozilla tree.
- 
- If the collection of source files changes, manual updates to moz.build may be
- needed, as we don't use the upstream makefiles.
-+
-+The in-tree copy may be omitted during build by --with-system-harfbuzz.
-+Make sure to keep pkg-config version check within old-configure.in in sync
-+with checkout version or increment latest tag by one if it's not based
-+on upstream release.
-diff --git a/gfx/moz.build b/gfx/moz.build
---- a/gfx/moz.build
-+++ b/gfx/moz.build
-@@ -2,26 +2,28 @@
- # vim: set filetype=python:
- # This Source Code Form is subject to the terms of the Mozilla Public
- # License, v. 2.0. If a copy of the MPL was not distributed with this
- # file, You can obtain one at http://mozilla.org/MPL/2.0/.
- 
- if CONFIG['MOZ_TREE_CAIRO']:
-     DIRS += ['cairo']
- 
-+if not CONFIG['MOZ_SYSTEM_HARFBUZZ']:
-+    DIRS += ['harfbuzz/src']
-+
- DIRS += [
-     '2d',
-     'ycbcr',
-     'angle',
-     'src',
-     'qcms',
-     'gl',
-     'layers',
-     'graphite2/src',
--    'harfbuzz/src',
-     'ots/src',
-     'thebes',
-     'ipc',
-     'vr',
-     'config',
- ]
- 
- if CONFIG['MOZ_ENABLE_SKIA']:
-diff --git a/gfx/skia/generate_mozbuild.py b/gfx/skia/generate_mozbuild.py
---- a/gfx/skia/generate_mozbuild.py
-+++ b/gfx/skia/generate_mozbuild.py
-@@ -138,16 +138,19 @@ if CONFIG['GNU_CXX'] and not CONFIG['CLA
- if CONFIG['CLANG_CXX'] or CONFIG['CLANG_CL']:
-     CXXFLAGS += [
-         '-Wno-implicit-fallthrough',
-         '-Wno-inconsistent-missing-override',
-         '-Wno-macro-redefined',
-         '-Wno-unused-private-field',
-     ]
- 
-+if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
-+    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
-+
- if CONFIG['MOZ_WIDGET_TOOLKIT'] in ('gtk2', 'gtk3', 'android'):
-     CXXFLAGS += CONFIG['MOZ_CAIRO_CFLAGS']
-     CXXFLAGS += CONFIG['CAIRO_FT_CFLAGS']
- 
- if CONFIG['MOZ_WIDGET_TOOLKIT'] in ('gtk2', 'gtk3'):
-     CXXFLAGS += CONFIG['MOZ_PANGO_CFLAGS']
- """
- 
-diff --git a/gfx/skia/moz.build b/gfx/skia/moz.build
---- a/gfx/skia/moz.build
-+++ b/gfx/skia/moz.build
-@@ -748,14 +748,17 @@ if CONFIG['GNU_CXX'] and not CONFIG['CLA
- if CONFIG['CLANG_CXX'] or CONFIG['CLANG_CL']:
-     CXXFLAGS += [
-         '-Wno-implicit-fallthrough',
-         '-Wno-inconsistent-missing-override',
-         '-Wno-macro-redefined',
-         '-Wno-unused-private-field',
-     ]
- 
-+if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
-+    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
-+
- if CONFIG['MOZ_WIDGET_TOOLKIT'] in ('gtk2', 'gtk3', 'android'):
-     CXXFLAGS += CONFIG['MOZ_CAIRO_CFLAGS']
-     CXXFLAGS += CONFIG['CAIRO_FT_CFLAGS']
- 
- if CONFIG['MOZ_WIDGET_TOOLKIT'] in ('gtk2', 'gtk3'):
-     CXXFLAGS += CONFIG['MOZ_PANGO_CFLAGS']
-diff --git a/gfx/thebes/moz.build b/gfx/thebes/moz.build
---- a/gfx/thebes/moz.build
-+++ b/gfx/thebes/moz.build
-@@ -263,11 +263,14 @@ if CONFIG['MOZ_WIDGET_TOOLKIT'] in ('and
- if CONFIG['MOZ_WIDGET_TOOLKIT'] in ('gtk2', 'gtk3'):
-     CXXFLAGS += CONFIG['MOZ_PANGO_CFLAGS']
- 
- LOCAL_INCLUDES += CONFIG['SKIA_INCLUDES']
- LOCAL_INCLUDES += ['/media/libyuv/include']
- 
- DEFINES['GRAPHITE2_STATIC'] = True
- 
-+if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
-+    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
-+
- if CONFIG['CLANG_CXX']:
-     # Suppress warnings from Skia header files.
-     SOURCES['gfxPlatform.cpp'].flags += ['-Wno-implicit-fallthrough']
-diff --git a/intl/unicharutil/util/moz.build b/intl/unicharutil/util/moz.build
---- a/intl/unicharutil/util/moz.build
-+++ b/intl/unicharutil/util/moz.build
-@@ -37,9 +37,12 @@ if CONFIG['_MSC_VER']:
-     DEFINES['_USE_ANSI_CPP'] = True
-     # Don't include directives about which CRT to use
-     CFLAGS += ['-Zl']
-     CXXFLAGS += ['-Zl']
- 
- if CONFIG['ENABLE_INTL_API']:
-     USE_LIBS += ['icu']
- 
-+if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
-+    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
-+
- DIST_INSTALL = True
-diff --git a/moz.configure b/moz.configure
---- a/moz.configure
-+++ b/moz.configure
-@@ -260,16 +260,28 @@ def extra_programs(target):
- 
- check_prog('DSYMUTIL', delayed_getattr(extra_programs, 'DSYMUTIL'),
-            allow_missing=True)
- check_prog('GENISOIMAGE', delayed_getattr(extra_programs, 'GENISOIMAGE'),
-            allow_missing=True)
- check_prog('RPMBUILD', delayed_getattr(extra_programs, 'RPMBUILD'),
-            allow_missing=True)
- 
-+option('--with-system-harfbuzz',
-+       help="Use system harfbuzz (located with pkgconfig)")
-+
-+@depends('--with-system-harfbuzz', compile_environment)
-+def check_for_harfbuzz(value, compile_env):
-+    return value and compile_env
-+
-+system_harfbuzz = pkg_check_modules('MOZ_HARFBUZZ', 'harfbuzz >= 1.3.3',
-+                                    check_for_harfbuzz)
-+
-+set_config('MOZ_SYSTEM_HARFBUZZ', depends_if(system_harfbuzz)(lambda _: True))
-+
- option('--enable-system-hunspell',
-        help="Use system hunspell (located with pkgconfig)")
- 
- @depends('--enable-system-hunspell', compile_environment)
- def check_for_hunspell(value, compile_env):
-     return value and compile_env
- 
- system_hunspell = pkg_check_modules('MOZ_HUNSPELL', 'hunspell',
-diff --git a/netwerk/dns/moz.build b/netwerk/dns/moz.build
---- a/netwerk/dns/moz.build
-+++ b/netwerk/dns/moz.build
-@@ -61,16 +61,19 @@ etld_data = GENERATED_FILES['etld_data.i
- etld_data.script = 'prepare_tlds.py'
- etld_data.inputs = ['effective_tld_names.dat']
- 
- # need to include etld_data.inc
- LOCAL_INCLUDES += [
-     '/netwerk/base',
- ]
- 
-+if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
-+    CXXFLAGS += CONFIG['MOZ_HARFBUZZ_CFLAGS']
-+
- if CONFIG['ENABLE_INTL_API']:
-     DEFINES['IDNA2008'] = True
-     USE_LIBS += ['icu']
- else:
-     UNIFIED_SOURCES += [
-         'nameprep.c',
-     ]
- 
-diff --git a/toolkit/library/moz.build b/toolkit/library/moz.build
---- a/toolkit/library/moz.build
-+++ b/toolkit/library/moz.build
-@@ -221,16 +221,19 @@ if CONFIG['SERVO_TARGET_DIR']:
-         OS_LIBS += ['-L%s' % CONFIG['SERVO_TARGET_DIR'], '-lgeckoservo']
- 
- if CONFIG['MOZ_SYSTEM_JPEG']:
-     OS_LIBS += CONFIG['MOZ_JPEG_LIBS']
- 
- if CONFIG['MOZ_SYSTEM_PNG']:
-     OS_LIBS += CONFIG['MOZ_PNG_LIBS']
- 
-+if CONFIG['MOZ_SYSTEM_HARFBUZZ']:
-+    OS_LIBS += CONFIG['MOZ_HARFBUZZ_LIBS']
-+
- if CONFIG['MOZ_SYSTEM_HUNSPELL']:
-     OS_LIBS += CONFIG['MOZ_HUNSPELL_LIBS']
- 
- if CONFIG['MOZ_SYSTEM_LIBEVENT']:
-     OS_LIBS += CONFIG['MOZ_LIBEVENT_LIBS']
- 
- if CONFIG['MOZ_SYSTEM_LIBVPX']:
-     OS_LIBS += CONFIG['MOZ_LIBVPX_LIBS']
-
diff --git a/gnu/packages/patches/icecat-use-system-media-libs.patch b/gnu/packages/patches/icecat-use-system-media-libs.patch
new file mode 100644
index 0000000000..648585a6f0
--- /dev/null
+++ b/gnu/packages/patches/icecat-use-system-media-libs.patch
@@ -0,0 +1,381 @@
+Support building with system media libraries.
+See <https://bugzilla.mozilla.org/show_bug.cgi?id=517422>
+
+Based on:
+  https://svnweb.freebsd.org/ports/head/www/firefox-esr/files/patch-z-bug517422?revision=472833&view=markup
+
+Changes to files within the bundled libraries are omitted, since those files
+are removed from Guix sources.  Modified for use with patch -p1, and to apply
+cleanly to GNU IceCat.
+
+--- icecat-60.2.0/build/moz.configure/old.configure
++++ icecat-60.2.0/build/moz.configure/old.configure
+@@ -273,7 +273,12 @@
+     '--with-system-libvpx',
+     '--with-system-nspr',
+     '--with-system-nss',
++    '--with-system-ogg',
+     '--with-system-png',
++    '--with-system-soundtouch',
++    '--with-system-theora',
++    '--with-system-tremor',
++    '--with-system-vorbis',
+     '--with-system-zlib',
+     '--with-thumb',
+     '--with-thumb-interwork',
+--- icecat-60.2.0/config/external/moz.build
++++ icecat-60.2.0/config/external/moz.build
+@@ -23,12 +23,21 @@
+ 
+ external_dirs += ['modules/xz-embedded']
+ 
+-if CONFIG['MOZ_VORBIS']:
++if not CONFIG['MOZ_SYSTEM_OGG']:
++    external_dirs += ['media/libogg']
++
++if CONFIG['MOZ_VORBIS'] and not CONFIG['MOZ_SYSTEM_VORBIS']:
+     external_dirs += ['media/libvorbis']
+ 
+-if CONFIG['MOZ_TREMOR']:
++if CONFIG['MOZ_TREMOR'] and not CONFIG['MOZ_SYSTEM_TREMOR']:
+     external_dirs += ['media/libtremor']
+ 
++if not CONFIG['MOZ_SYSTEM_THEORA']:
++    external_dirs += ['media/libtheora']
++
++if not CONFIG['MOZ_SYSTEM_SOUNDTOUCH']:
++    external_dirs += ['media/libsoundtouch']
++
+ if CONFIG['MOZ_WEBM_ENCODER']:
+     external_dirs += ['media/libmkv']
+ 
+@@ -51,11 +60,8 @@
+     'media/kiss_fft',
+     'media/libcubeb',
+     'media/libnestegg',
+-    'media/libogg',
+     'media/libopus',
+-    'media/libtheora',
+     'media/libspeex_resampler',
+-    'media/libsoundtouch',
+     'media/mp4parse-rust',
+     'media/psshparser'
+ ]
+--- icecat-60.2.0/config/system-headers.mozbuild
++++ icecat-60.2.0/config/system-headers.mozbuild
+@@ -1324,6 +1324,28 @@
+         'harfbuzz/hb.h',
+     ]
+ 
++if CONFIG['MOZ_SYSTEM_OGG']:
++    system_headers += [
++        'ogg/ogg.h',
++        'ogg/os_types.h',
++    ]
++
++if CONFIG['MOZ_SYSTEM_THEORA']:
++    system_headers += [
++        'theora/theoradec.h',
++    ]
++
++if CONFIG['MOZ_SYSTEM_VORBIS']:
++    system_headers += [
++        'vorbis/codec.h',
++        'vorbis/vorbisenc.h',
++    ]
++
++if CONFIG['MOZ_SYSTEM_TREMOR']:
++    system_headers += [
++        'tremor/ivorbiscodec.h',
++    ]
++
+ if CONFIG['MOZ_SYSTEM_LIBVPX']:
+     system_headers += [
+         'vpx_mem/vpx_mem.h',
+--- icecat-60.2.0/dom/media/AudioStream.cpp
++++ icecat-60.2.0/dom/media/AudioStream.cpp
+@@ -121,7 +121,9 @@
+   : mMonitor("AudioStream")
+   , mChannels(0)
+   , mOutChannels(0)
++#ifndef MOZ_SYSTEM_SOUNDTOUCH
+   , mTimeStretcher(nullptr)
++#endif
+   , mDumpFile(nullptr)
+   , mState(INITIALIZED)
+   , mDataSource(aSource)
+@@ -142,9 +144,11 @@
+   if (mDumpFile) {
+     fclose(mDumpFile);
+   }
++#ifndef MOZ_SYSTEM_SOUNDTOUCH
+   if (mTimeStretcher) {
+     soundtouch::destroySoundTouchObj(mTimeStretcher);
+   }
++#endif
+ #if defined(XP_WIN)
+   if (XRE_IsContentProcess()) {
+     audio::AudioNotificationReceiver::Unregister(this);
+@@ -168,7 +172,11 @@
+ {
+   mMonitor.AssertCurrentThreadOwns();
+   if (!mTimeStretcher) {
++#ifdef MOZ_SYSTEM_SOUNDTOUCH
++    mTimeStretcher = new soundtouch::SoundTouch();
++#else
+     mTimeStretcher = soundtouch::createSoundTouchObj();
++#endif
+     mTimeStretcher->setSampleRate(mAudioClock.GetInputRate());
+     mTimeStretcher->setChannels(mOutChannels);
+     mTimeStretcher->setPitch(1.0);
+--- icecat-60.2.0/dom/media/AudioStream.h
++++ icecat-60.2.0/dom/media/AudioStream.h
+@@ -15,7 +15,11 @@
+ #include "mozilla/TimeStamp.h"
+ #include "mozilla/UniquePtr.h"
+ #include "CubebUtils.h"
++#ifdef MOZ_SYSTEM_SOUNDTOUCH
++#include "soundtouch/SoundTouch.h"
++#else
+ #include "soundtouch/SoundTouchFactory.h"
++#endif
+ 
+ #if defined(XP_WIN)
+ #include "mozilla/audio/AudioNotificationReceiver.h"
+@@ -297,7 +301,11 @@
+   uint32_t mChannels;
+   uint32_t mOutChannels;
+   AudioClock mAudioClock;
++#ifdef MOZ_SYSTEM_SOUNDTOUCH
++  nsAutoPtr<soundtouch::SoundTouch> mTimeStretcher;
++#else
+   soundtouch::SoundTouch* mTimeStretcher;
++#endif
+ 
+   // Output file for dumping audio
+   FILE* mDumpFile;
+--- icecat-60.2.0/dom/media/moz.build
++++ icecat-60.2.0/dom/media/moz.build
+@@ -327,6 +327,21 @@
+ 
+ DEFINES['MOZILLA_INTERNAL_API'] = True
+ 
++if CONFIG['MOZ_SYSTEM_OGG']:
++    CXXFLAGS += CONFIG['MOZ_OGG_CFLAGS']
++
++if CONFIG['MOZ_SYSTEM_THEORA']:
++    CXXFLAGS += CONFIG['MOZ_THEORA_CFLAGS']
++
++if CONFIG['MOZ_SYSTEM_VORBIS']:
++    CXXFLAGS += CONFIG['MOZ_VORBIS_CFLAGS']
++
++if CONFIG['MOZ_SYSTEM_TREMOR']:
++    CXXFLAGS += CONFIG['MOZ_TREMOR_CFLAGS']
++
++if CONFIG['MOZ_SYSTEM_SOUNDTOUCH']:
++    CXXFLAGS += CONFIG['MOZ_SOUNDTOUCH_CFLAGS']
++
+ if CONFIG['MOZ_ANDROID_HLS_SUPPORT']:
+     DEFINES['MOZ_ANDROID_HLS_SUPPORT'] = True
+ 
+--- icecat-60.2.0/dom/media/platforms/ffmpeg/ffvpx/FFVPXRuntimeLinker.cpp
++++ icecat-60.2.0/dom/media/platforms/ffmpeg/ffvpx/FFVPXRuntimeLinker.cpp
+@@ -15,9 +15,13 @@
+ #include <windows.h>
+ #endif
+ 
++#ifdef MOZ_SYSTEM_SOUNDTOUCH
++#include "nsXPCOMPrivate.h" // for XUL_DLL
++#else
+ // We use a known symbol located in lgpllibs to determine its location.
+ // soundtouch happens to be always included in lgpllibs
+ #include "soundtouch/SoundTouch.h"
++#endif
+ 
+ namespace mozilla {
+ 
+@@ -64,6 +68,12 @@
+ 
+   sLinkStatus = LinkStatus_FAILED;
+ 
++#ifdef MOZ_SYSTEM_SOUNDTOUCH
++  // We retrieve the path of the XUL library as this is where mozavcodec and
++  // mozavutil libs are located.
++  char* path =
++    PR_GetLibraryFilePathname(XUL_DLL, (PRFuncPtr)&FFVPXRuntimeLinker::Init);
++#else
+   // We retrieve the path of the lgpllibs library as this is where mozavcodec
+   // and mozavutil libs are located.
+   PathString lgpllibsname = GetLibraryName(nullptr, "lgpllibs");
+@@ -73,6 +83,7 @@
+   PathString path =
+     GetLibraryFilePathname(lgpllibsname.get(),
+                            (PRFuncPtr)&soundtouch::SoundTouch::getVersionId);
++#endif
+   if (path.IsEmpty()) {
+     return false;
+   }
+--- icecat-60.2.0/old-configure.in
++++ icecat-60.2.0/old-configure.in
+@@ -2451,6 +2451,111 @@
+ fi
+ fi # COMPILE_ENVIRONMENT
+ 
++dnl ========================================================
++dnl Check for libogg
++dnl ========================================================
++
++MOZ_ARG_WITH_BOOL(system-ogg,
++[  --with-system-ogg       Use system libogg (located with pkgconfig)],
++MOZ_SYSTEM_OGG=1,
++MOZ_SYSTEM_OGG=)
++
++if test -n "$MOZ_SYSTEM_OGG"; then
++    PKG_CHECK_MODULES(MOZ_OGG, ogg >= 1.3.3)
++
++    _SAVE_LIBS=$LIBS
++    LIBS="$LIBS $MOZ_OGG_LIBS"
++    AC_CHECK_FUNC(ogg_set_mem_functions, [],
++      [AC_DEFINE(MOZ_OGG_NO_MEM_REPORTING)])
++    LIBS=$_SAVE_LIBS
++fi
++
++AC_SUBST(MOZ_SYSTEM_OGG)
++
++dnl ========================================================
++dnl Check for libvorbis
++dnl ========================================================
++
++MOZ_ARG_WITH_BOOL(system-vorbis,
++[  --with-system-vorbis    Use system libvorbis (located with pkgconfig)],
++MOZ_SYSTEM_VORBIS=1,
++MOZ_SYSTEM_VORBIS=)
++
++if test -n "$MOZ_SYSTEM_VORBIS"; then
++    PKG_CHECK_MODULES(MOZ_VORBIS, vorbis vorbisenc >= 1.3.6)
++fi
++
++AC_SUBST(MOZ_SYSTEM_VORBIS)
++
++dnl ========================================================
++dnl Check for integer-only libvorbis aka tremor
++dnl ========================================================
++
++MOZ_ARG_WITH_BOOL(system-tremor,
++[  --with-system-tremor    Use system libtremor (located with pkgconfig)],
++MOZ_SYSTEM_TREMOR=1,
++MOZ_SYSTEM_TREMOR=)
++
++if test -n "$MOZ_SYSTEM_TREMOR"; then
++    PKG_CHECK_MODULES(MOZ_TREMOR, vorbisidec >= 1.2.1)
++fi
++
++AC_SUBST(MOZ_SYSTEM_TREMOR)
++
++dnl ========================================================
++dnl Check for libtheora
++dnl ========================================================
++
++MOZ_ARG_WITH_BOOL(system-theora,
++[  --with-system-theora    Use system libtheora (located with pkgconfig)],
++MOZ_SYSTEM_THEORA=1,
++MOZ_SYSTEM_THEORA=)
++
++if test -n "$MOZ_SYSTEM_THEORA"; then
++    PKG_CHECK_MODULES(MOZ_THEORA, theora >= 1.2)
++fi
++
++AC_SUBST(MOZ_SYSTEM_THEORA)
++
++dnl ========================================================
++dnl Check for libSoundTouch
++dnl ========================================================
++
++MOZ_ARG_WITH_BOOL(system-soundtouch,
++[  --with-system-soundtouch Use system libSoundTouch (located with pkgconfig)],
++MOZ_SYSTEM_SOUNDTOUCH=1,
++MOZ_SYSTEM_SOUNDTOUCH=)
++
++if test -n "$MOZ_SYSTEM_SOUNDTOUCH"; then
++    PKG_CHECK_MODULES(MOZ_SOUNDTOUCH, soundtouch >= 1.9.0)
++
++    AC_LANG_SAVE
++    AC_LANG_CPLUSPLUS
++    _SAVE_CXXFLAGS=$CXXFLAGS
++    CXXFLAGS="$CXXFLAGS $MOZ_SOUNDTOUCH_CFLAGS"
++    AC_CACHE_CHECK(for soundtouch sample type,
++                   ac_cv_soundtouch_sample_type,
++                   [AC_TRY_COMPILE([#include <SoundTouch.h>
++                                    #ifndef SOUNDTOUCH_INTEGER_SAMPLES
++                                    #error soundtouch expects float samples
++                                    #endif],
++                                   [],
++                                   [ac_cv_soundtouch_sample_type=short],
++                                   [ac_cv_soundtouch_sample_type=float])])
++    CXXFLAGS=$_SAVE_CXXFLAGS
++    AC_LANG_RESTORE
++
++    if test \( -n "$MOZ_SAMPLE_TYPE_S16" -a "$ac_cv_soundtouch_sample_type" != short \) \
++         -o \( -n "$MOZ_SAMPLE_TYPE_FLOAT32" -a "$ac_cv_soundtouch_sample_type" != float \) ; then
++        AC_MSG_ERROR([SoundTouch library is built with incompatible sample type. Either rebuild the library with/without --enable-integer-samples, chase default Mozilla sample type or remove --with-system-soundtouch.])
++    fi
++fi
++
++if test -n "$MOZ_SYSTEM_SOUNDTOUCH"; then
++    AC_DEFINE(MOZ_SYSTEM_SOUNDTOUCH)
++fi
++AC_SUBST(MOZ_SYSTEM_SOUNDTOUCH)
++
+ dnl system libvpx Support
+ dnl ========================================================
+ MOZ_ARG_WITH_BOOL(system-libvpx,
+--- icecat-60.2.0/toolkit/library/moz.build
++++ icecat-60.2.0/toolkit/library/moz.build
+@@ -244,6 +244,21 @@
+ if CONFIG['MOZ_SYSTEM_HUNSPELL']:
+     OS_LIBS += CONFIG['MOZ_HUNSPELL_LIBS']
+ 
++if CONFIG['MOZ_SYSTEM_OGG']:
++    OS_LIBS += CONFIG['MOZ_OGG_LIBS']
++
++if CONFIG['MOZ_SYSTEM_THEORA']:
++    OS_LIBS += CONFIG['MOZ_THEORA_LIBS']
++
++if CONFIG['MOZ_SYSTEM_VORBIS']:
++    OS_LIBS += CONFIG['MOZ_VORBIS_LIBS']
++
++if CONFIG['MOZ_SYSTEM_TREMOR']:
++    OS_LIBS += CONFIG['MOZ_TREMOR_LIBS']
++
++if CONFIG['MOZ_SYSTEM_SOUNDTOUCH']:
++    OS_LIBS += CONFIG['MOZ_SOUNDTOUCH_LIBS']
++
+ if CONFIG['MOZ_SYSTEM_LIBEVENT']:
+     OS_LIBS += CONFIG['MOZ_LIBEVENT_LIBS']
+ 
+--- icecat-60.2.0/xpcom/build/XPCOMInit.cpp
++++ icecat-60.2.0/xpcom/build/XPCOMInit.cpp
+@@ -138,7 +138,9 @@
+ 
+ #include "mozilla/ipc/GeckoChildProcessHost.h"
+ 
++#ifndef MOZ_OGG_NO_MEM_REPORTING
+ #include "ogg/ogg.h"
++#endif
+ #if defined(MOZ_VPX) && !defined(MOZ_VPX_NO_MEM_REPORTING)
+ #if defined(HAVE_STDINT_H)
+ // mozilla-config.h defines HAVE_STDINT_H, and then it's defined *again* in
+@@ -639,11 +641,13 @@
+   // this oddness.
+   mozilla::SetICUMemoryFunctions();
+ 
++#ifndef MOZ_OGG_NO_MEM_REPORTING
+   // Do the same for libogg.
+   ogg_set_mem_functions(OggReporter::CountingMalloc,
+                         OggReporter::CountingCalloc,
+                         OggReporter::CountingRealloc,
+                         OggReporter::CountingFree);
++#endif
+ 
+ #if defined(MOZ_VPX) && !defined(MOZ_VPX_NO_MEM_REPORTING)
+   // And for VPX.
diff --git a/gnu/packages/patches/libgxps-CVE-2017-11590.patch b/gnu/packages/patches/libgxps-CVE-2017-11590.patch
deleted file mode 100644
index 9caa79b6f0..0000000000
--- a/gnu/packages/patches/libgxps-CVE-2017-11590.patch
+++ /dev/null
@@ -1,48 +0,0 @@
-Fix CVE-2017-11590:
-
-https://bugzilla.gnome.org/show_bug.cgi?id=785479
-https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2017-11590
-
-Patch copied from upstream source repository:
-
-https://git.gnome.org/browse/libgxps/commit/?id=9d5d292055250ed298f3b89dc332d6db4003a031
-
-From 9d5d292055250ed298f3b89dc332d6db4003a031 Mon Sep 17 00:00:00 2001
-From: Marek Kasik <mkasik@redhat.com>
-Date: Wed, 26 Jul 2017 16:23:37 +0200
-Subject: archive: Check for pathname being NULL before dereferencing
-
-Check whether "archive_entry_pathname ()" returns a non-NULL pathname
-before using it to avoid a NULL pointer being dereferenced.
-
-https://bugzilla.gnome.org/show_bug.cgi?id=785479
----
- libgxps/gxps-archive.c | 5 ++++-
- 1 file changed, 4 insertions(+), 1 deletion(-)
-
-diff --git a/libgxps/gxps-archive.c b/libgxps/gxps-archive.c
-index acf8d7d..e763773 100644
---- a/libgxps/gxps-archive.c
-+++ b/libgxps/gxps-archive.c
-@@ -257,6 +257,7 @@ gxps_archive_initable_init (GInitable     *initable,
- 	GXPSArchive          *archive;
- 	ZipArchive           *zip;
- 	struct archive_entry *entry;
-+	const gchar          *pathname;
- 
- 	archive = GXPS_ARCHIVE (initable);
- 
-@@ -281,7 +282,9 @@ gxps_archive_initable_init (GInitable     *initable,
- 
-         while (gxps_zip_archive_iter_next (zip, &entry)) {
-                 /* FIXME: We can ignore directories here */
--                g_hash_table_add (archive->entries, g_strdup (archive_entry_pathname (entry)));
-+                pathname = archive_entry_pathname (entry);
-+                if (pathname != NULL)
-+                        g_hash_table_add (archive->entries, g_strdup (pathname));
-                 archive_read_data_skip (zip->archive);
-         }
- 
--- 
-cgit v0.12
-
diff --git a/gnu/packages/patches/libssh-hostname-parser-bug.patch b/gnu/packages/patches/libssh-hostname-parser-bug.patch
index 69f46cbdd6..de2336e86d 100644
--- a/gnu/packages/patches/libssh-hostname-parser-bug.patch
+++ b/gnu/packages/patches/libssh-hostname-parser-bug.patch
@@ -1,31 +1,17 @@
-Fix "Hostname" parsing in OpenSSH config files, as reported
-at <https://red.libssh.org/issues/260>.
-
-From: Niels Ole Salscheider <niels_ole@salscheider-online.de>
-Date: Mon, 8 May 2017 17:36:13 +0200
-Subject: [PATCH] Fix reading of the first parameter
-
-This is a fixup for 7b8b5eb4eac314a3a29be812bef0264c6611f6e7.
-Previously, it would return as long as the parameter was _not_ seen
-before. It also did not handle the case for the unsupported opcode (-1)
+It does not handle the case for the unsupported opcode (-1)
 which would cause a segfault when accessing the "seen" array.
----
- src/config.c | 5 +++--
- 1 file changed, 3 insertions(+), 2 deletions(-)
 
 diff --git a/src/config.c b/src/config.c
-index 7c03b27..238a655 100644
+index c5313ec8..72e07639 100644
 --- a/src/config.c
 +++ b/src/config.c
-@@ -218,8 +218,9 @@ static int ssh_config_parse_line(ssh_session session, const char *line,
+@@ -218,7 +218,8 @@ static int ssh_config_parse_line(ssh_session session, const char *line,
    }
  
    opcode = ssh_config_get_opcode(keyword);
 -  if (*parsing == 1 && opcode != SOC_HOST) {
--      if (seen[opcode] == 0) {
 +  if (*parsing == 1 && opcode != SOC_HOST &&
 +      opcode > SOC_UNSUPPORTED && opcode < SOC_END) {
-+      if (seen[opcode] == 1) {
+       if (seen[opcode] != 0) {
            return 0;
        }
-       seen[opcode] = 1;
diff --git a/gnu/packages/patches/libvpx-use-after-free-in-postproc.patch b/gnu/packages/patches/libvpx-use-after-free-in-postproc.patch
new file mode 100644
index 0000000000..04f2a953b7
--- /dev/null
+++ b/gnu/packages/patches/libvpx-use-after-free-in-postproc.patch
@@ -0,0 +1,34 @@
+From 52add5896661d186dec284ed646a4b33b607d2c7 Mon Sep 17 00:00:00 2001
+From: Jerome Jiang <jianj@google.com>
+Date: Wed, 23 May 2018 15:43:00 -0700
+Subject: [PATCH] VP8: Fix use-after-free in postproc.
+
+The pointer in vp8 postproc refers to show_frame_mi which is only
+updated on show frame. However, when there is a no-show frame which also
+changes the size (thus new frame buffers allocated), show_frame_mi is
+not updated with new frame buffer memory.
+
+Change the pointer in postproc to mi which is always updated.
+
+Bug: 842265
+Change-Id: I33874f2112b39f74562cba528432b5f239e6a7bd
+---
+ vp8/common/postproc.c | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/vp8/common/postproc.c b/vp8/common/postproc.c
+index d67ee8a57..8c292d616 100644
+--- a/vp8/common/postproc.c
++++ b/vp8/common/postproc.c
+@@ -65,7 +65,7 @@ void vp8_deblock(VP8_COMMON *cm, YV12_BUFFER_CONFIG *source,
+   double level = 6.0e-05 * q * q * q - .0067 * q * q + .306 * q + .0065;
+   int ppl = (int)(level + .5);
+ 
+-  const MODE_INFO *mode_info_context = cm->show_frame_mi;
++  const MODE_INFO *mode_info_context = cm->mi;
+   int mbr, mbc;
+ 
+   /* The pixel thresholds are adjusted according to if or not the macroblock
+-- 
+2.19.0
+
diff --git a/gnu/packages/patches/python-CVE-2018-14647.patch b/gnu/packages/patches/python-CVE-2018-14647.patch
new file mode 100644
index 0000000000..24f8d21820
--- /dev/null
+++ b/gnu/packages/patches/python-CVE-2018-14647.patch
@@ -0,0 +1,61 @@
+Fix CVE-2018-14647:
+https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-14647
+https://bugs.python.org/issue34623
+
+Taken from upstream:
+https://github.com/python/cpython/commit/f7666e828cc3d5873136473ea36ba2013d624fa1
+
+diff --git Include/pyexpat.h Include/pyexpat.h
+index 44259bf6d7..07020b5dc9 100644
+--- Include/pyexpat.h
++++ Include/pyexpat.h
+@@ -3,7 +3,7 @@
+ 
+ /* note: you must import expat.h before importing this module! */
+ 
+-#define PyExpat_CAPI_MAGIC  "pyexpat.expat_CAPI 1.0"
++#define PyExpat_CAPI_MAGIC  "pyexpat.expat_CAPI 1.1"
+ #define PyExpat_CAPSULE_NAME "pyexpat.expat_CAPI"
+ 
+ struct PyExpat_CAPI
+@@ -48,6 +48,8 @@ struct PyExpat_CAPI
+     enum XML_Status (*SetEncoding)(XML_Parser parser, const XML_Char *encoding);
+     int (*DefaultUnknownEncodingHandler)(
+         void *encodingHandlerData, const XML_Char *name, XML_Encoding *info);
++    /* might be none for expat < 2.1.0 */
++    int (*SetHashSalt)(XML_Parser parser, unsigned long hash_salt);
+     /* always add new stuff to the end! */
+ };
+ 
+diff --git Modules/_elementtree.c Modules/_elementtree.c
+index 707ab2912b..53f05f937f 100644
+--- Modules/_elementtree.c
++++ Modules/_elementtree.c
+@@ -3261,6 +3261,11 @@ _elementtree_XMLParser___init___impl(XMLParserObject *self, PyObject *html,
+         PyErr_NoMemory();
+         return -1;
+     }
++    /* expat < 2.1.0 has no XML_SetHashSalt() */
++    if (EXPAT(SetHashSalt) != NULL) {
++        EXPAT(SetHashSalt)(self->parser,
++                           (unsigned long)_Py_HashSecret.expat.hashsalt);
++    }
+ 
+     if (target) {
+         Py_INCREF(target);
+diff --git Modules/pyexpat.c Modules/pyexpat.c
+index 47c3e86c20..aa21d93c11 100644
+--- Modules/pyexpat.c
++++ Modules/pyexpat.c
+@@ -1887,6 +1887,11 @@ MODULE_INITFUNC(void)
+     capi.SetStartDoctypeDeclHandler = XML_SetStartDoctypeDeclHandler;
+     capi.SetEncoding = XML_SetEncoding;
+     capi.DefaultUnknownEncodingHandler = PyUnknownEncodingHandler;
++#if XML_COMBINED_VERSION >= 20100
++    capi.SetHashSalt = XML_SetHashSalt;
++#else
++    capi.SetHashSalt = NULL;
++#endif
+ 
+     /* export using capsule */
+     capi_object = PyCapsule_New(&capi, PyExpat_CAPSULE_NAME, NULL);
diff --git a/gnu/packages/patches/python-testtools.patch b/gnu/packages/patches/python-testtools.patch
new file mode 100644
index 0000000000..42536e50f9
--- /dev/null
+++ b/gnu/packages/patches/python-testtools.patch
@@ -0,0 +1,57 @@
+https://github.com/testing-cabal/testtools/commit/29004731f9c480b7c44a9c2605513d50d372898f.patch
+Should be fixed in the next release
+
+From 29004731f9c480b7c44a9c2605513d50d372898f Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Miro=20Hron=C4=8Dok?= <miro@hroncok.cz>
+Date: Thu, 17 May 2018 17:52:26 +0200
+Subject: [PATCH] Fix the tests on Python 3.7
+
+Exception's repr got changed not to include trailing comma
+
+Fixes https://github.com/testing-cabal/testtools/issues/270
+---
+ .travis.yml                                |  1 +
+ testtools/tests/matchers/test_exception.py | 11 +++++++++--
+ 2 files changed, 10 insertions(+), 2 deletions(-)
+
+diff --git a/.travis.yml b/.travis.yml
+index 7f1f4db7..784608e0 100644
+--- a/.travis.yml
++++ b/.travis.yml
+@@ -5,6 +5,7 @@ python:
+   - "3.4"
+   - "3.5"
+   - "3.6"
++  - "3.7-dev"
+   - "pypy"
+ 
+ install:
+diff --git a/testtools/tests/matchers/test_exception.py b/testtools/tests/matchers/test_exception.py
+index 6cd80af1..acd39252 100644
+--- a/testtools/tests/matchers/test_exception.py
++++ b/testtools/tests/matchers/test_exception.py
+@@ -32,15 +32,22 @@ class TestMatchesExceptionInstanceInterface(TestCase, TestMatchersInterface):
+     matches_matches = [error_foo]
+     matches_mismatches = [error_bar, error_base_foo]
+ 
++    if sys.version_info >= (3, 7):
++        # exception's repr has changed
++        _e = ''
++    else:
++        _e = ','
++
+     str_examples = [
+-        ("MatchesException(Exception('foo',))",
++        ("MatchesException(Exception('foo'%s))" % _e,
+          MatchesException(Exception('foo')))
+         ]
+     describe_examples = [
+         ("%r is not a %r" % (Exception, ValueError),
+          error_base_foo,
+          MatchesException(ValueError("foo"))),
+-        ("ValueError('bar',) has different arguments to ValueError('foo',).",
++        ("ValueError('bar'%s) has different arguments to ValueError('foo'%s)."
++         % (_e, _e),
+          error_bar,
+          MatchesException(ValueError("foo"))),
+         ]
diff --git a/gnu/packages/patches/python2-CVE-2018-1000802.patch b/gnu/packages/patches/python2-CVE-2018-1000802.patch
new file mode 100644
index 0000000000..0d5bc77c84
--- /dev/null
+++ b/gnu/packages/patches/python2-CVE-2018-1000802.patch
@@ -0,0 +1,47 @@
+Fix CVE-2018-1000802:
+
+https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-1000802
+
+Taken from upstream commit (sans NEWS):
+https://github.com/python/cpython/commit/d8b103b8b3ef9644805341216963a64098642435
+
+diff --git a/Lib/shutil.py b/Lib/shutil.py
+index 3462f7c5e9..0ab1a06f52 100644
+--- a/Lib/shutil.py
++++ b/Lib/shutil.py
+@@ -413,17 +413,21 @@ def _make_tarball(base_name, base_dir, compress="gzip", verbose=0, dry_run=0,
+ 
+     return archive_name
+ 
+-def _call_external_zip(base_dir, zip_filename, verbose=False, dry_run=False):
++def _call_external_zip(base_dir, zip_filename, verbose, dry_run, logger):
+     # XXX see if we want to keep an external call here
+     if verbose:
+         zipoptions = "-r"
+     else:
+         zipoptions = "-rq"
+-    from distutils.errors import DistutilsExecError
+-    from distutils.spawn import spawn
++    cmd = ["zip", zipoptions, zip_filename, base_dir]
++    if logger is not None:
++        logger.info(' '.join(cmd))
++    if dry_run:
++        return
++    import subprocess
+     try:
+-        spawn(["zip", zipoptions, zip_filename, base_dir], dry_run=dry_run)
+-    except DistutilsExecError:
++        subprocess.check_call(cmd)
++    except subprocess.CalledProcessError:
+         # XXX really should distinguish between "couldn't find
+         # external 'zip' command" and "zip failed".
+         raise ExecError, \
+@@ -458,7 +462,7 @@ def _make_zipfile(base_name, base_dir, verbose=0, dry_run=0, logger=None):
+         zipfile = None
+ 
+     if zipfile is None:
+-        _call_external_zip(base_dir, zip_filename, verbose, dry_run)
++        _call_external_zip(base_dir, zip_filename, verbose, dry_run, logger)
+     else:
+         if logger is not None:
+             logger.info("creating '%s' and adding '%s' to it",
diff --git a/gnu/packages/patches/python2-CVE-2018-14647.patch b/gnu/packages/patches/python2-CVE-2018-14647.patch
new file mode 100644
index 0000000000..6226b06aca
--- /dev/null
+++ b/gnu/packages/patches/python2-CVE-2018-14647.patch
@@ -0,0 +1,61 @@
+Fix CVE-2018-14647:
+https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-14647
+https://bugs.python.org/issue34623
+
+Taken from upstream:
+https://github.com/python/cpython/commit/18b20bad75b4ff0486940fba4ec680e96e70f3a2
+
+diff --git a/Include/pyexpat.h b/Include/pyexpat.h
+index 5340ef5fa3..3fc5fa54da 100644
+--- a/Include/pyexpat.h
++++ b/Include/pyexpat.h
+@@ -3,7 +3,7 @@
+ 
+ /* note: you must import expat.h before importing this module! */
+ 
+-#define PyExpat_CAPI_MAGIC  "pyexpat.expat_CAPI 1.0"
++#define PyExpat_CAPI_MAGIC  "pyexpat.expat_CAPI 1.1"
+ #define PyExpat_CAPSULE_NAME "pyexpat.expat_CAPI"
+ 
+ struct PyExpat_CAPI 
+@@ -43,6 +43,8 @@ struct PyExpat_CAPI
+         XML_Parser parser, XML_UnknownEncodingHandler handler,
+         void *encodingHandlerData);
+     void (*SetUserData)(XML_Parser parser, void *userData);
++    /* might be none for expat < 2.1.0 */
++    int (*SetHashSalt)(XML_Parser parser, unsigned long hash_salt);
+     /* always add new stuff to the end! */
+ };
+ 
+diff --git a/Modules/_elementtree.c b/Modules/_elementtree.c
+index f7f992dd3a..b38e0ab329 100644
+--- a/Modules/_elementtree.c
++++ b/Modules/_elementtree.c
+@@ -2574,6 +2574,11 @@ xmlparser(PyObject* self_, PyObject* args, PyObject* kw)
+         PyErr_NoMemory();
+         return NULL;
+     }
++    /* expat < 2.1.0 has no XML_SetHashSalt() */
++    if (EXPAT(SetHashSalt) != NULL) {
++        EXPAT(SetHashSalt)(self->parser,
++                           (unsigned long)_Py_HashSecret.prefix);
++    }
+ 
+     ALLOC(sizeof(XMLParserObject), "create expatparser");
+ 
+diff --git a/Modules/pyexpat.c b/Modules/pyexpat.c
+index 2b4d31293c..1f8c0d70a5 100644
+--- a/Modules/pyexpat.c
++++ b/Modules/pyexpat.c
+@@ -2042,6 +2042,11 @@ MODULE_INITFUNC(void)
+     capi.SetProcessingInstructionHandler = XML_SetProcessingInstructionHandler;
+     capi.SetUnknownEncodingHandler = XML_SetUnknownEncodingHandler;
+     capi.SetUserData = XML_SetUserData;
++#if XML_COMBINED_VERSION >= 20100
++    capi.SetHashSalt = XML_SetHashSalt;
++#else
++    capi.SetHashSalt = NULL;
++#endif
+ 
+     /* export using capsule */
+     capi_object = PyCapsule_New(&capi, PyExpat_CAPSULE_NAME, NULL);
diff --git a/gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch b/gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch
new file mode 100644
index 0000000000..6bbec67e75
--- /dev/null
+++ b/gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch
@@ -0,0 +1,45 @@
+From: Jean Delvare <jdelvare@suse.de>
+Subject: compat/getopt: Allow non-digit parameter embedded in short option
+
+The compatibility getopt script allows only digit parameters to be
+embedded in short options. Util-linux's getopt implementation does
+not have such a restriction and allows any parameter to be embedded
+in short options. As a consequence, using the compatibility getopt
+script would choke for example on "-pab", which is a legal option
+of the "quilt refresh" command.
+
+Remove the limitation on digits so that the compatibility getopt
+script allows what util-linux allows. This fixes the second half
+of bug #54772:
+https://savannah.nongnu.org/bugs/index.php?54772
+
+As a side note, this feature of the compatibility script was broken
+anyway, as it would output the digits in reverse order.
+
+Signed-off-by: Jean Delvare <jdelvare@suse.de>
+---
+ compat/getopt.in |   13 ++++---------
+ 1 file changed, 4 insertions(+), 9 deletions(-)
+
+--- quilt.orig/compat/getopt.in	2018-10-03 16:05:56.818667040 +0200
++++ quilt/compat/getopt.in	2018-10-03 16:12:17.624841732 +0200
+@@ -108,15 +108,10 @@ foreach my $word (@words) {
+ 				if (scalar(@letters) == 0) {
+ 					$need_param = $letter;
+ 				} else {
+-					# short options can have numerical args
+-					# embedded in the short option list: -UO
+-					die "unexpected character after option $letter"
+-						if ($letters[$#letters] !~ /[0-9]/);
+-					my @digits;
+-					while (scalar(@letters) && ($letters[$#letters] =~ /[0-9]/)) {
+-						push @digits, pop @letters;
+-					}
+-					push @options, quote_word(join('', reverse @digits));
++					# short options can have args
++					# embedded in the short option list
++					push @options, quote_word(join('', reverse @letters));
++					@letters = ();
+ 				}
+ 			}
+ 		}
diff --git a/gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch b/gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch
new file mode 100644
index 0000000000..cde2c8d41c
--- /dev/null
+++ b/gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch
@@ -0,0 +1,58 @@
+From: Jean Delvare <jdelvare@suse.de>
+Subject: compat/getopt: Handle a second separator
+
+getopt can be passed 2 '--' separators. The first one tells that
+getopt options are over and target program options start. The second
+one tells that the target program's options are over and following
+arguments should be treated as non-options even if they look like
+options.
+
+This second separator was not handled, causing the compatibility
+getopt script to treat the following arguments as options, eventually
+failing one way or another.
+
+Properly detect and handle the second separator. This fixes the first
+half of bug #54772:
+https://savannah.nongnu.org/bugs/index.php?54772
+
+Signed-off-by: Jean Delvare <jdelvare@suse.de>
+---
+ compat/getopt.in |   13 ++++++++++---
+ 1 file changed, 10 insertions(+), 3 deletions(-)
+
+--- quilt.orig/compat/getopt.in	2018-10-03 15:23:21.147620172 +0200
++++ quilt/compat/getopt.in	2018-10-03 16:05:56.818667040 +0200
+@@ -8,12 +8,12 @@
+ 
+ use strict;
+ 
+-my $opts;
++my $opts = '';
+ my @words;
+ my $found_sep = 0;
+ 
+ foreach my $arg (@ARGV) {
+-  if ($arg eq '--') {
++  if (!$found_sep && $arg eq '--') {
+     $found_sep = 1;
+   }
+   else {
+@@ -62,10 +62,17 @@ sub quote_word
+ 	return "'$word'";
+ }
+ 
++# there can be a second separator, to inhibit processing following arguments
++# as options
++$found_sep = 0;
+ foreach my $word (@words) {
++	if ($word eq '--') {
++		$found_sep = 1;
++		next;
++	}
+ 
+ 	# allow '-' to be an option value
+-	if (!$need_param && $word !~ /^-./) {
++	if ($found_sep || (!$need_param && $word !~ /^-./)) {
+ 		push @barewords, quote_word($word);
+ 		next;
+ 	}
diff --git a/gnu/packages/patches/quilt-test-fix-regex.patch b/gnu/packages/patches/quilt-test-fix-regex.patch
new file mode 100644
index 0000000000..2e249ac55b
--- /dev/null
+++ b/gnu/packages/patches/quilt-test-fix-regex.patch
@@ -0,0 +1,41 @@
+From 5193b137b5a9034ce79946edd40760df2f63a82a Mon Sep 17 00:00:00 2001
+From: Jean Delvare <jdelvare@suse.de>
+Date: Tue, 25 Apr 2017 15:17:53 +0200
+Subject: test: Escape curly braces in regex
+
+Curly braces in perl regex are supposed to be escaped, recent
+versions of perl complain when they aren't:
+
+Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/%{ <-- HERE (\w+)}/ at ./run line 114.
+Unescaped left brace in regex is deprecated, passed through in regex; marked by <-- HERE in m/%{ <-- HERE \?}/ at ./run line 290.
+
+Signed-off-by: Jean Delvare <jdelvare@suse.de>
+---
+ test/run | 4 ++--
+ 1 file changed, 2 insertions(+), 2 deletions(-)
+
+diff --git a/test/run b/test/run
+index 942014e..03afc7a 100755
+--- a/test/run
++++ b/test/run
+@@ -112,7 +112,7 @@ sub flush_output()
+ sub substitute_vars($)
+ {
+ 	my ($line) = @_;
+-	$line =~ s[%{(\w+)}][defined $ENV{$1} ? $ENV{$1} : ""]eg;
++	$line =~ s[%\{(\w+)\}][defined $ENV{$1} ? $ENV{$1} : ""]eg;
+ 	return $line;
+ }
+ 
+@@ -288,7 +288,7 @@ while (defined(my $line = <SOURCE>)) {
+ 	# Parse the next command
+ 	if ($line =~ s/^\s*\$ ?//) {
+ 		# Substitute %{?} with the last command's status
+-		$line =~ s[%{\?}][$last_status]eg;
++		$line =~ s[%\{\?\}][$last_status]eg;
+ 
+ 		chomp($prog = substitute_vars($line));
+ 		$prog_line = $lineno;
+-- 
+cgit v1.0-41-gc330
+
diff --git a/gnu/packages/patches/rsem-makefile.patch b/gnu/packages/patches/rsem-makefile.patch
deleted file mode 100644
index 5481dc685f..0000000000
--- a/gnu/packages/patches/rsem-makefile.patch
+++ /dev/null
@@ -1,682 +0,0 @@
-This patch simplifies the Makefile, making it much easier to build rsem
-without the bundled version of samtools.  It has already been submitted
-upstream: https://github.com/bli25wisc/RSEM/pull/11
-
-From 161894e91a16c7e15af57e4fcfe8cb613711c7fa Mon Sep 17 00:00:00 2001
-From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
-Date: Wed, 22 Apr 2015 14:51:07 +0200
-Subject: [PATCH 1/7] remove all headers from Makefile
-
----
- Makefile | 95 +++++++++++-----------------------------------------------------
- 1 file changed, 16 insertions(+), 79 deletions(-)
-
-diff --git a/Makefile b/Makefile
-index 54e2603..3a55ed8 100644
---- a/Makefile
-+++ b/Makefile
-@@ -10,133 +10,70 @@ all : $(PROGRAMS)
- sam/libbam.a :
- 	cd sam ; ${MAKE} all
- 
--Transcript.h : utils.h
--
--Transcripts.h : utils.h my_assert.h Transcript.h
--
--rsem-extract-reference-transcripts : utils.h my_assert.h GTFItem.h Transcript.h Transcripts.h extractRef.cpp
-+rsem-extract-reference-transcripts : extractRef.cpp
- 	$(CC) -Wall -O3 extractRef.cpp -o rsem-extract-reference-transcripts
- 
--rsem-synthesis-reference-transcripts : utils.h my_assert.h Transcript.h Transcripts.h synthesisRef.cpp
-+rsem-synthesis-reference-transcripts : synthesisRef.cpp
- 	$(CC) -Wall -O3 synthesisRef.cpp -o rsem-synthesis-reference-transcripts
- 
--BowtieRefSeqPolicy.h : RefSeqPolicy.h
--
--RefSeq.h : utils.h
--
--Refs.h : utils.h RefSeq.h RefSeqPolicy.h PolyARules.h
--
--
- rsem-preref : preRef.o
- 	$(CC) preRef.o -o rsem-preref
- 
--preRef.o : utils.h RefSeq.h Refs.h PolyARules.h RefSeqPolicy.h AlignerRefSeqPolicy.h preRef.cpp
-+preRef.o : preRef.cpp
- 	$(CC) $(COFLAGS) preRef.cpp
- 
--
--SingleRead.h : Read.h
--
--SingleReadQ.h : Read.h
--
--PairedEndRead.h : Read.h SingleRead.h
--
--PairedEndReadQ.h : Read.h SingleReadQ.h
--
--
--PairedEndHit.h : SingleHit.h
--
--HitContainer.h : GroupInfo.h
--
--
--SamParser.h : sam/sam.h sam/bam.h utils.h my_assert.h SingleRead.h SingleReadQ.h PairedEndRead.h PairedEndReadQ.h SingleHit.h PairedEndHit.h Transcripts.h
--
--
- rsem-parse-alignments : parseIt.o sam/libbam.a
- 	$(CC) -o rsem-parse-alignments parseIt.o sam/libbam.a -lz -lpthread 
- 
--parseIt.o : utils.h GroupInfo.h Read.h SingleRead.h SingleReadQ.h PairedEndRead.h PairedEndReadQ.h SingleHit.h PairedEndHit.h HitContainer.h SamParser.h Transcripts.h sam/sam.h sam/bam.h parseIt.cpp
-+parseIt.o : parseIt.cpp
- 	$(CC) -Wall -O2 -c -I. parseIt.cpp
- 
--
--rsem-build-read-index : utils.h buildReadIndex.cpp
-+rsem-build-read-index : buildReadIndex.cpp
- 	$(CC) -O3 buildReadIndex.cpp -o rsem-build-read-index
- 
--
--simul.h : boost/random.hpp
--
--ReadReader.h : SingleRead.h SingleReadQ.h PairedEndRead.h PairedEndReadQ.h ReadIndex.h
--
--SingleModel.h : utils.h my_assert.h Orientation.h LenDist.h RSPD.h Profile.h NoiseProfile.h ModelParams.h RefSeq.h Refs.h SingleRead.h SingleHit.h ReadReader.h simul.h
--
--SingleQModel.h : utils.h my_assert.h Orientation.h LenDist.h RSPD.h QualDist.h QProfile.h NoiseQProfile.h ModelParams.h RefSeq.h Refs.h SingleReadQ.h SingleHit.h ReadReader.h simul.h
--
--PairedEndModel.h : utils.h my_assert.h Orientation.h LenDist.h RSPD.h Profile.h NoiseProfile.h ModelParams.h RefSeq.h Refs.h SingleRead.h PairedEndRead.h PairedEndHit.h ReadReader.h simul.h 
--
--PairedEndQModel.h : utils.h my_assert.h Orientation.h LenDist.h RSPD.h QualDist.h QProfile.h NoiseQProfile.h ModelParams.h RefSeq.h Refs.h SingleReadQ.h PairedEndReadQ.h PairedEndHit.h ReadReader.h simul.h
--
--HitWrapper.h : HitContainer.h
--
--sam_rsem_aux.h : sam/bam.h
--
--sam_rsem_cvt.h : sam/bam.h Transcript.h Transcripts.h
--
--BamWriter.h : sam/sam.h sam/bam.h sam_rsem_aux.h sam_rsem_cvt.h SingleHit.h PairedEndHit.h HitWrapper.h Transcript.h Transcripts.h
--
--sampling.h : boost/random.hpp
--
--WriteResults.h : utils.h my_assert.h GroupInfo.h Transcript.h Transcripts.h RefSeq.h Refs.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h
--
- rsem-run-em : EM.o sam/libbam.a
- 	$(CC) -o rsem-run-em EM.o sam/libbam.a -lz -lpthread
- 
--EM.o : utils.h my_assert.h Read.h SingleRead.h SingleReadQ.h PairedEndRead.h PairedEndReadQ.h SingleHit.h PairedEndHit.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h Refs.h GroupInfo.h HitContainer.h ReadIndex.h ReadReader.h Orientation.h LenDist.h RSPD.h QualDist.h QProfile.h NoiseQProfile.h ModelParams.h RefSeq.h RefSeqPolicy.h PolyARules.h Profile.h NoiseProfile.h Transcript.h Transcripts.h HitWrapper.h BamWriter.h sam/bam.h sam/sam.h simul.h sam_rsem_aux.h sampling.h boost/random.hpp WriteResults.h EM.cpp
-+EM.o : EM.cpp
- 	$(CC) $(COFLAGS) EM.cpp
- 
--bc_aux.h : sam/bam.h
--
--BamConverter.h : utils.h my_assert.h sam/sam.h sam/bam.h sam_rsem_aux.h sam_rsem_cvt.h bc_aux.h Transcript.h Transcripts.h
--
--rsem-tbam2gbam : utils.h Transcripts.h Transcript.h bc_aux.h BamConverter.h sam/sam.h sam/bam.h sam/libbam.a sam_rsem_aux.h sam_rsem_cvt.h tbam2gbam.cpp sam/libbam.a
-+rsem-tbam2gbam : tbam2gbam.cpp sam/libbam.a
- 	$(CC) -O3 -Wall tbam2gbam.cpp sam/libbam.a -lz -lpthread -o $@
- 
--rsem-bam2wig : utils.h my_assert.h wiggle.h wiggle.o sam/libbam.a bam2wig.cpp
-+rsem-bam2wig : wiggle.o sam/libbam.a bam2wig.cpp
- 	$(CC) -O3 -Wall bam2wig.cpp wiggle.o sam/libbam.a -lz -lpthread -o $@
- 
--rsem-bam2readdepth : utils.h my_assert.h wiggle.h wiggle.o sam/libbam.a bam2readdepth.cpp
-+rsem-bam2readdepth : wiggle.o sam/libbam.a bam2readdepth.cpp
- 	$(CC) -O3 -Wall bam2readdepth.cpp wiggle.o sam/libbam.a -lz -lpthread -o $@
- 
--wiggle.o: sam/bam.h sam/sam.h wiggle.cpp wiggle.h
-+wiggle.o: wiggle.cpp
- 	$(CC) $(COFLAGS) wiggle.cpp
- 
- rsem-simulate-reads : simulation.o
- 	$(CC) -o rsem-simulate-reads simulation.o
- 
--simulation.o : utils.h Read.h SingleRead.h SingleReadQ.h PairedEndRead.h PairedEndReadQ.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h Refs.h RefSeq.h GroupInfo.h Transcript.h Transcripts.h Orientation.h LenDist.h RSPD.h QualDist.h QProfile.h NoiseQProfile.h Profile.h NoiseProfile.h simul.h boost/random.hpp WriteResults.h simulation.cpp
-+simulation.o : simulation.cpp
- 	$(CC) $(COFLAGS) simulation.cpp
- 
- rsem-run-gibbs : Gibbs.o
- 	$(CC) -o rsem-run-gibbs Gibbs.o -lpthread
- 
--#some header files are omitted
--Gibbs.o : utils.h my_assert.h boost/random.hpp sampling.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h RefSeq.h RefSeqPolicy.h PolyARules.h Refs.h GroupInfo.h WriteResults.h Gibbs.cpp 
-+Gibbs.o : Gibbs.cpp
- 	$(CC) $(COFLAGS) Gibbs.cpp
- 
--Buffer.h : my_assert.h
--
- rsem-calculate-credibility-intervals : calcCI.o
- 	$(CC) -o rsem-calculate-credibility-intervals calcCI.o -lpthread
- 
--#some header files are omitted
--calcCI.o : utils.h my_assert.h boost/random.hpp sampling.h Model.h SingleModel.h SingleQModel.h PairedEndModel.h PairedEndQModel.h RefSeq.h RefSeqPolicy.h PolyARules.h Refs.h GroupInfo.h WriteResults.h Buffer.h calcCI.cpp
-+calcCI.o : calcCI.cpp
- 	$(CC) $(COFLAGS) calcCI.cpp
- 
--rsem-get-unique : sam/bam.h sam/sam.h getUnique.cpp sam/libbam.a
-+rsem-get-unique : getUnique.cpp sam/libbam.a
- 	$(CC) -O3 -Wall getUnique.cpp sam/libbam.a -lz -lpthread -o $@
- 
--rsem-sam-validator : sam/bam.h sam/sam.h my_assert.h samValidator.cpp sam/libbam.a
-+rsem-sam-validator : samValidator.cpp sam/libbam.a
- 	$(CC) -O3 -Wall samValidator.cpp sam/libbam.a -lz -lpthread -o $@
- 
--rsem-scan-for-paired-end-reads : sam/bam.h sam/sam.h my_assert.h scanForPairedEndReads.cpp sam/libbam.a
-+rsem-scan-for-paired-end-reads : scanForPairedEndReads.cpp sam/libbam.a
- 	$(CC) -O3 -Wall scanForPairedEndReads.cpp sam/libbam.a -lz -lpthread -o $@
- 
- ebseq :
-
-From ec136638a727632e20abfaeb65c22c46d15ca8c4 Mon Sep 17 00:00:00 2001
-From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
-Date: Wed, 22 Apr 2015 15:06:41 +0200
-Subject: [PATCH 2/7] include current dir, ./sam and ./boost by default
-
----
- Makefile | 48 ++++++++++++++++++++++++------------------------
- 1 file changed, 24 insertions(+), 24 deletions(-)
-
-diff --git a/Makefile b/Makefile
-index 3a55ed8..1dd97ca 100644
---- a/Makefile
-+++ b/Makefile
-@@ -1,6 +1,6 @@
- CC = g++
--CFLAGS = -Wall -c -I.
--COFLAGS = -Wall -O3 -ffast-math -c -I.
-+CFLAGS = -Wall -I. -I./sam -I./boost
-+COFLAGS = -O3 -ffast-math -c
- PROGRAMS = rsem-extract-reference-transcripts rsem-synthesis-reference-transcripts rsem-preref rsem-parse-alignments rsem-build-read-index rsem-run-em rsem-tbam2gbam rsem-run-gibbs rsem-calculate-credibility-intervals rsem-simulate-reads rsem-bam2wig rsem-get-unique rsem-bam2readdepth rsem-sam-validator rsem-scan-for-paired-end-reads
- 
- .PHONY : all ebseq clean
-@@ -11,70 +11,70 @@ sam/libbam.a :
- 	cd sam ; ${MAKE} all
- 
- rsem-extract-reference-transcripts : extractRef.cpp
--	$(CC) -Wall -O3 extractRef.cpp -o rsem-extract-reference-transcripts
-+	$(CC) $(CFLAGS) -O3 extractRef.cpp -o rsem-extract-reference-transcripts
- 
- rsem-synthesis-reference-transcripts : synthesisRef.cpp
--	$(CC) -Wall -O3 synthesisRef.cpp -o rsem-synthesis-reference-transcripts
-+	$(CC) $(CFLAGS) -O3 synthesisRef.cpp -o rsem-synthesis-reference-transcripts
- 
- rsem-preref : preRef.o
--	$(CC) preRef.o -o rsem-preref
-+	$(CC) $(CFLAGS) preRef.o -o rsem-preref
- 
- preRef.o : preRef.cpp
--	$(CC) $(COFLAGS) preRef.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) preRef.cpp
- 
- rsem-parse-alignments : parseIt.o sam/libbam.a
--	$(CC) -o rsem-parse-alignments parseIt.o sam/libbam.a -lz -lpthread 
-+	$(CC) $(CFLAGS) -o rsem-parse-alignments parseIt.o sam/libbam.a -lz -lpthread
- 
- parseIt.o : parseIt.cpp
--	$(CC) -Wall -O2 -c -I. parseIt.cpp
-+	$(CC) $(CFLAGS) -O2 -c parseIt.cpp
- 
- rsem-build-read-index : buildReadIndex.cpp
--	$(CC) -O3 buildReadIndex.cpp -o rsem-build-read-index
-+	$(CC) $(CFLAGS) -O3 buildReadIndex.cpp -o rsem-build-read-index
- 
- rsem-run-em : EM.o sam/libbam.a
--	$(CC) -o rsem-run-em EM.o sam/libbam.a -lz -lpthread
-+	$(CC) $(CFLAGS) -o rsem-run-em EM.o sam/libbam.a -lz -lpthread
- 
- EM.o : EM.cpp
--	$(CC) $(COFLAGS) EM.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) EM.cpp
- 
- rsem-tbam2gbam : tbam2gbam.cpp sam/libbam.a
--	$(CC) -O3 -Wall tbam2gbam.cpp sam/libbam.a -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 tbam2gbam.cpp sam/libbam.a -lz -lpthread -o $@
- 
- rsem-bam2wig : wiggle.o sam/libbam.a bam2wig.cpp
--	$(CC) -O3 -Wall bam2wig.cpp wiggle.o sam/libbam.a -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 bam2wig.cpp wiggle.o sam/libbam.a -lz -lpthread -o $@
- 
- rsem-bam2readdepth : wiggle.o sam/libbam.a bam2readdepth.cpp
--	$(CC) -O3 -Wall bam2readdepth.cpp wiggle.o sam/libbam.a -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 bam2readdepth.cpp wiggle.o sam/libbam.a -lz -lpthread -o $@
- 
- wiggle.o: wiggle.cpp
--	$(CC) $(COFLAGS) wiggle.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) wiggle.cpp
- 
- rsem-simulate-reads : simulation.o
--	$(CC) -o rsem-simulate-reads simulation.o
-+	$(CC) $(CFLAGS) -o rsem-simulate-reads simulation.o
- 
- simulation.o : simulation.cpp
--	$(CC) $(COFLAGS) simulation.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) simulation.cpp
- 
- rsem-run-gibbs : Gibbs.o
--	$(CC) -o rsem-run-gibbs Gibbs.o -lpthread
-+	$(CC) $(CFLAGS) -o rsem-run-gibbs Gibbs.o -lpthread
- 
- Gibbs.o : Gibbs.cpp
--	$(CC) $(COFLAGS) Gibbs.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) Gibbs.cpp
- 
- rsem-calculate-credibility-intervals : calcCI.o
--	$(CC) -o rsem-calculate-credibility-intervals calcCI.o -lpthread
-+	$(CC) $(CFLAGS) -o rsem-calculate-credibility-intervals calcCI.o -lpthread
- 
- calcCI.o : calcCI.cpp
--	$(CC) $(COFLAGS) calcCI.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) calcCI.cpp
- 
- rsem-get-unique : getUnique.cpp sam/libbam.a
--	$(CC) -O3 -Wall getUnique.cpp sam/libbam.a -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 getUnique.cpp sam/libbam.a -lz -lpthread -o $@
- 
- rsem-sam-validator : samValidator.cpp sam/libbam.a
--	$(CC) -O3 -Wall samValidator.cpp sam/libbam.a -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 samValidator.cpp sam/libbam.a -lz -lpthread -o $@
- 
- rsem-scan-for-paired-end-reads : scanForPairedEndReads.cpp sam/libbam.a
--	$(CC) -O3 -Wall scanForPairedEndReads.cpp sam/libbam.a -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 scanForPairedEndReads.cpp sam/libbam.a -lz -lpthread -o $@
- 
- ebseq :
- 	cd EBSeq ; ${MAKE} all
-
-From d366614ea50f79fdd93e3c76383ccb6fcdeaa8e0 Mon Sep 17 00:00:00 2001
-From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
-Date: Wed, 22 Apr 2015 15:10:49 +0200
-Subject: [PATCH 3/7] separate object rules from rules for executables
-
----
- Makefile | 50 ++++++++++++++++++++++++++------------------------
- 1 file changed, 26 insertions(+), 24 deletions(-)
-
-diff --git a/Makefile b/Makefile
-index 1dd97ca..ae4de3b 100644
---- a/Makefile
-+++ b/Makefile
-@@ -10,6 +10,32 @@ all : $(PROGRAMS)
- sam/libbam.a :
- 	cd sam ; ${MAKE} all
- 
-+ebseq :
-+	cd EBSeq ; ${MAKE} all
-+
-+
-+calcCI.o : calcCI.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) calcCI.cpp
-+
-+EM.o : EM.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) EM.cpp
-+
-+Gibbs.o : Gibbs.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) Gibbs.cpp
-+
-+preRef.o : preRef.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) preRef.cpp
-+
-+parseIt.o : parseIt.cpp
-+	$(CC) $(CFLAGS) -O2 -c parseIt.cpp
-+
-+simulation.o : simulation.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) simulation.cpp
-+
-+wiggle.o: wiggle.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) wiggle.cpp
-+
-+
- rsem-extract-reference-transcripts : extractRef.cpp
- 	$(CC) $(CFLAGS) -O3 extractRef.cpp -o rsem-extract-reference-transcripts
- 
-@@ -19,24 +45,15 @@ rsem-synthesis-reference-transcripts : synthesisRef.cpp
- rsem-preref : preRef.o
- 	$(CC) $(CFLAGS) preRef.o -o rsem-preref
- 
--preRef.o : preRef.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) preRef.cpp
--
- rsem-parse-alignments : parseIt.o sam/libbam.a
- 	$(CC) $(CFLAGS) -o rsem-parse-alignments parseIt.o sam/libbam.a -lz -lpthread
- 
--parseIt.o : parseIt.cpp
--	$(CC) $(CFLAGS) -O2 -c parseIt.cpp
--
- rsem-build-read-index : buildReadIndex.cpp
- 	$(CC) $(CFLAGS) -O3 buildReadIndex.cpp -o rsem-build-read-index
- 
- rsem-run-em : EM.o sam/libbam.a
- 	$(CC) $(CFLAGS) -o rsem-run-em EM.o sam/libbam.a -lz -lpthread
- 
--EM.o : EM.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) EM.cpp
--
- rsem-tbam2gbam : tbam2gbam.cpp sam/libbam.a
- 	$(CC) $(CFLAGS) -O3 tbam2gbam.cpp sam/libbam.a -lz -lpthread -o $@
- 
-@@ -46,27 +63,15 @@ rsem-bam2wig : wiggle.o sam/libbam.a bam2wig.cpp
- rsem-bam2readdepth : wiggle.o sam/libbam.a bam2readdepth.cpp
- 	$(CC) $(CFLAGS) -O3 bam2readdepth.cpp wiggle.o sam/libbam.a -lz -lpthread -o $@
- 
--wiggle.o: wiggle.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) wiggle.cpp
--
- rsem-simulate-reads : simulation.o
- 	$(CC) $(CFLAGS) -o rsem-simulate-reads simulation.o
- 
--simulation.o : simulation.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) simulation.cpp
--
- rsem-run-gibbs : Gibbs.o
- 	$(CC) $(CFLAGS) -o rsem-run-gibbs Gibbs.o -lpthread
- 
--Gibbs.o : Gibbs.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) Gibbs.cpp
--
- rsem-calculate-credibility-intervals : calcCI.o
- 	$(CC) $(CFLAGS) -o rsem-calculate-credibility-intervals calcCI.o -lpthread
- 
--calcCI.o : calcCI.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) calcCI.cpp
--
- rsem-get-unique : getUnique.cpp sam/libbam.a
- 	$(CC) $(CFLAGS) -O3 getUnique.cpp sam/libbam.a -lz -lpthread -o $@
- 
-@@ -76,9 +81,6 @@ rsem-sam-validator : samValidator.cpp sam/libbam.a
- rsem-scan-for-paired-end-reads : scanForPairedEndReads.cpp sam/libbam.a
- 	$(CC) $(CFLAGS) -O3 scanForPairedEndReads.cpp sam/libbam.a -lz -lpthread -o $@
- 
--ebseq :
--	cd EBSeq ; ${MAKE} all
--
- clean :
- 	rm -f *.o *~ $(PROGRAMS)
- 	cd sam ; ${MAKE} clean
-
-From 6ba1c33cccdf7c8e7df7a3189e7db204be3b1e8d Mon Sep 17 00:00:00 2001
-From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
-Date: Wed, 22 Apr 2015 15:28:30 +0200
-Subject: [PATCH 4/7] add ./sam to library directories, link with -lbam
-
----
- Makefile | 36 ++++++++++++++++++------------------
- 1 file changed, 18 insertions(+), 18 deletions(-)
-
-diff --git a/Makefile b/Makefile
-index ae4de3b..a87cc4d 100644
---- a/Makefile
-+++ b/Makefile
-@@ -1,11 +1,11 @@
- CC = g++
--CFLAGS = -Wall -I. -I./sam -I./boost
-+CFLAGS = -Wall -I. -I./sam -I./boost -L./sam
- COFLAGS = -O3 -ffast-math -c
- PROGRAMS = rsem-extract-reference-transcripts rsem-synthesis-reference-transcripts rsem-preref rsem-parse-alignments rsem-build-read-index rsem-run-em rsem-tbam2gbam rsem-run-gibbs rsem-calculate-credibility-intervals rsem-simulate-reads rsem-bam2wig rsem-get-unique rsem-bam2readdepth rsem-sam-validator rsem-scan-for-paired-end-reads
- 
- .PHONY : all ebseq clean
- 
--all : $(PROGRAMS)
-+all : sam/libbam.a $(PROGRAMS)
- 
- sam/libbam.a :
- 	cd sam ; ${MAKE} all
-@@ -45,23 +45,23 @@ rsem-synthesis-reference-transcripts : synthesisRef.cpp
- rsem-preref : preRef.o
- 	$(CC) $(CFLAGS) preRef.o -o rsem-preref
- 
--rsem-parse-alignments : parseIt.o sam/libbam.a
--	$(CC) $(CFLAGS) -o rsem-parse-alignments parseIt.o sam/libbam.a -lz -lpthread
-+rsem-parse-alignments : parseIt.o
-+	$(CC) $(CFLAGS) -o rsem-parse-alignments parseIt.o -lbam -lz -lpthread
- 
- rsem-build-read-index : buildReadIndex.cpp
- 	$(CC) $(CFLAGS) -O3 buildReadIndex.cpp -o rsem-build-read-index
- 
--rsem-run-em : EM.o sam/libbam.a
--	$(CC) $(CFLAGS) -o rsem-run-em EM.o sam/libbam.a -lz -lpthread
-+rsem-run-em : EM.o
-+	$(CC) $(CFLAGS) -o rsem-run-em EM.o -lbam -lz -lpthread
- 
--rsem-tbam2gbam : tbam2gbam.cpp sam/libbam.a
--	$(CC) $(CFLAGS) -O3 tbam2gbam.cpp sam/libbam.a -lz -lpthread -o $@
-+rsem-tbam2gbam : tbam2gbam.cpp
-+	$(CC) $(CFLAGS) -O3 tbam2gbam.cpp -lbam -lz -lpthread -o $@
- 
--rsem-bam2wig : wiggle.o sam/libbam.a bam2wig.cpp
--	$(CC) $(CFLAGS) -O3 bam2wig.cpp wiggle.o sam/libbam.a -lz -lpthread -o $@
-+rsem-bam2wig : wiggle.o bam2wig.cpp
-+	$(CC) $(CFLAGS) -O3 bam2wig.cpp wiggle.o -lbam -lz -lpthread -o $@
- 
--rsem-bam2readdepth : wiggle.o sam/libbam.a bam2readdepth.cpp
--	$(CC) $(CFLAGS) -O3 bam2readdepth.cpp wiggle.o sam/libbam.a -lz -lpthread -o $@
-+rsem-bam2readdepth : wiggle.o bam2readdepth.cpp
-+	$(CC) $(CFLAGS) -O3 bam2readdepth.cpp wiggle.o -lbam -lz -lpthread -o $@
- 
- rsem-simulate-reads : simulation.o
- 	$(CC) $(CFLAGS) -o rsem-simulate-reads simulation.o
-@@ -72,14 +72,14 @@ rsem-run-gibbs : Gibbs.o
- rsem-calculate-credibility-intervals : calcCI.o
- 	$(CC) $(CFLAGS) -o rsem-calculate-credibility-intervals calcCI.o -lpthread
- 
--rsem-get-unique : getUnique.cpp sam/libbam.a
--	$(CC) $(CFLAGS) -O3 getUnique.cpp sam/libbam.a -lz -lpthread -o $@
-+rsem-get-unique : getUnique.cpp
-+	$(CC) $(CFLAGS) -O3 getUnique.cpp -lbam -lz -lpthread -o $@
- 
--rsem-sam-validator : samValidator.cpp sam/libbam.a
--	$(CC) $(CFLAGS) -O3 samValidator.cpp sam/libbam.a -lz -lpthread -o $@
-+rsem-sam-validator : samValidator.cpp
-+	$(CC) $(CFLAGS) -O3 samValidator.cpp -lbam -lz -lpthread -o $@
- 
--rsem-scan-for-paired-end-reads : scanForPairedEndReads.cpp sam/libbam.a
--	$(CC) $(CFLAGS) -O3 scanForPairedEndReads.cpp sam/libbam.a -lz -lpthread -o $@
-+rsem-scan-for-paired-end-reads : scanForPairedEndReads.cpp
-+	$(CC) $(CFLAGS) -O3 scanForPairedEndReads.cpp -lbam -lz -lpthread -o $@
- 
- clean :
- 	rm -f *.o *~ $(PROGRAMS)
-
-From 5402b88c269df79ee245c1c59e15f3c8282a0220 Mon Sep 17 00:00:00 2001
-From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
-Date: Wed, 22 Apr 2015 15:33:02 +0200
-Subject: [PATCH 5/7] do not repeat target name, use $@ instead
-
----
- Makefile | 18 +++++++++---------
- 1 file changed, 9 insertions(+), 9 deletions(-)
-
-diff --git a/Makefile b/Makefile
-index a87cc4d..7ec90a3 100644
---- a/Makefile
-+++ b/Makefile
-@@ -37,22 +37,22 @@ wiggle.o: wiggle.cpp
- 
- 
- rsem-extract-reference-transcripts : extractRef.cpp
--	$(CC) $(CFLAGS) -O3 extractRef.cpp -o rsem-extract-reference-transcripts
-+	$(CC) $(CFLAGS) -O3 extractRef.cpp -o $@
- 
- rsem-synthesis-reference-transcripts : synthesisRef.cpp
--	$(CC) $(CFLAGS) -O3 synthesisRef.cpp -o rsem-synthesis-reference-transcripts
-+	$(CC) $(CFLAGS) -O3 synthesisRef.cpp -o $@
- 
- rsem-preref : preRef.o
--	$(CC) $(CFLAGS) preRef.o -o rsem-preref
-+	$(CC) $(CFLAGS) preRef.o -o $@
- 
- rsem-parse-alignments : parseIt.o
--	$(CC) $(CFLAGS) -o rsem-parse-alignments parseIt.o -lbam -lz -lpthread
-+	$(CC) $(CFLAGS) -o $@ parseIt.o -lbam -lz -lpthread
- 
- rsem-build-read-index : buildReadIndex.cpp
--	$(CC) $(CFLAGS) -O3 buildReadIndex.cpp -o rsem-build-read-index
-+	$(CC) $(CFLAGS) -O3 buildReadIndex.cpp -o $@
- 
- rsem-run-em : EM.o
--	$(CC) $(CFLAGS) -o rsem-run-em EM.o -lbam -lz -lpthread
-+	$(CC) $(CFLAGS) -o $@ EM.o -lbam -lz -lpthread
- 
- rsem-tbam2gbam : tbam2gbam.cpp
- 	$(CC) $(CFLAGS) -O3 tbam2gbam.cpp -lbam -lz -lpthread -o $@
-@@ -64,13 +64,13 @@ rsem-bam2readdepth : wiggle.o bam2readdepth.cpp
- 	$(CC) $(CFLAGS) -O3 bam2readdepth.cpp wiggle.o -lbam -lz -lpthread -o $@
- 
- rsem-simulate-reads : simulation.o
--	$(CC) $(CFLAGS) -o rsem-simulate-reads simulation.o
-+	$(CC) $(CFLAGS) -o $@ simulation.o
- 
- rsem-run-gibbs : Gibbs.o
--	$(CC) $(CFLAGS) -o rsem-run-gibbs Gibbs.o -lpthread
-+	$(CC) $(CFLAGS) -o $@ Gibbs.o -lpthread
- 
- rsem-calculate-credibility-intervals : calcCI.o
--	$(CC) $(CFLAGS) -o rsem-calculate-credibility-intervals calcCI.o -lpthread
-+	$(CC) $(CFLAGS) -o $@ calcCI.o -lpthread
- 
- rsem-get-unique : getUnique.cpp
- 	$(CC) $(CFLAGS) -O3 getUnique.cpp -lbam -lz -lpthread -o $@
-
-From f60784bc7aa303cc825bd87dd3f5d7d26c51bded Mon Sep 17 00:00:00 2001
-From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
-Date: Wed, 22 Apr 2015 15:44:53 +0200
-Subject: [PATCH 6/7] use automatic variables to refer to prerequisites
-
----
- Makefile | 44 ++++++++++++++++++++++----------------------
- 1 file changed, 22 insertions(+), 22 deletions(-)
-
-diff --git a/Makefile b/Makefile
-index 7ec90a3..6540d81 100644
---- a/Makefile
-+++ b/Makefile
-@@ -15,71 +15,71 @@ ebseq :
- 
- 
- calcCI.o : calcCI.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) calcCI.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) $<
- 
- EM.o : EM.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) EM.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) $<
- 
- Gibbs.o : Gibbs.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) Gibbs.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) $<
- 
- preRef.o : preRef.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) preRef.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) $<
- 
- parseIt.o : parseIt.cpp
--	$(CC) $(CFLAGS) -O2 -c parseIt.cpp
-+	$(CC) $(CFLAGS) -O2 -c $<
- 
- simulation.o : simulation.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) simulation.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) $<
- 
- wiggle.o: wiggle.cpp
--	$(CC) $(CFLAGS) $(COFLAGS) wiggle.cpp
-+	$(CC) $(CFLAGS) $(COFLAGS) $<
- 
- 
- rsem-extract-reference-transcripts : extractRef.cpp
--	$(CC) $(CFLAGS) -O3 extractRef.cpp -o $@
-+	$(CC) $(CFLAGS) -O3 $< -o $@
- 
- rsem-synthesis-reference-transcripts : synthesisRef.cpp
--	$(CC) $(CFLAGS) -O3 synthesisRef.cpp -o $@
-+	$(CC) $(CFLAGS) -O3 $< -o $@
- 
- rsem-preref : preRef.o
--	$(CC) $(CFLAGS) preRef.o -o $@
-+	$(CC) $(CFLAGS) $< -o $@
- 
- rsem-parse-alignments : parseIt.o
--	$(CC) $(CFLAGS) -o $@ parseIt.o -lbam -lz -lpthread
-+	$(CC) $(CFLAGS) -o $@ $< -lbam -lz -lpthread
- 
- rsem-build-read-index : buildReadIndex.cpp
--	$(CC) $(CFLAGS) -O3 buildReadIndex.cpp -o $@
-+	$(CC) $(CFLAGS) -O3 $< -o $@
- 
- rsem-run-em : EM.o
--	$(CC) $(CFLAGS) -o $@ EM.o -lbam -lz -lpthread
-+	$(CC) $(CFLAGS) -o $@ $< -lbam -lz -lpthread
- 
- rsem-tbam2gbam : tbam2gbam.cpp
--	$(CC) $(CFLAGS) -O3 tbam2gbam.cpp -lbam -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 $< -lbam -lz -lpthread -o $@
- 
- rsem-bam2wig : wiggle.o bam2wig.cpp
--	$(CC) $(CFLAGS) -O3 bam2wig.cpp wiggle.o -lbam -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 $^ -lbam -lz -lpthread -o $@
- 
- rsem-bam2readdepth : wiggle.o bam2readdepth.cpp
--	$(CC) $(CFLAGS) -O3 bam2readdepth.cpp wiggle.o -lbam -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 $^ -lbam -lz -lpthread -o $@
- 
- rsem-simulate-reads : simulation.o
--	$(CC) $(CFLAGS) -o $@ simulation.o
-+	$(CC) $(CFLAGS) -o $@ $<
- 
- rsem-run-gibbs : Gibbs.o
--	$(CC) $(CFLAGS) -o $@ Gibbs.o -lpthread
-+	$(CC) $(CFLAGS) -o $@ $< -lpthread
- 
- rsem-calculate-credibility-intervals : calcCI.o
--	$(CC) $(CFLAGS) -o $@ calcCI.o -lpthread
-+	$(CC) $(CFLAGS) -o $@ $< -lpthread
- 
- rsem-get-unique : getUnique.cpp
--	$(CC) $(CFLAGS) -O3 getUnique.cpp -lbam -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 $< -lbam -lz -lpthread -o $@
- 
- rsem-sam-validator : samValidator.cpp
--	$(CC) $(CFLAGS) -O3 samValidator.cpp -lbam -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 $< -lbam -lz -lpthread -o $@
- 
- rsem-scan-for-paired-end-reads : scanForPairedEndReads.cpp
--	$(CC) $(CFLAGS) -O3 scanForPairedEndReads.cpp -lbam -lz -lpthread -o $@
-+	$(CC) $(CFLAGS) -O3 $< -lbam -lz -lpthread -o $@
- 
- clean :
- 	rm -f *.o *~ $(PROGRAMS)
-
-From 0cf9721077f67fb4ca15fdc59cbfbf24a944debd Mon Sep 17 00:00:00 2001
-From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de>
-Date: Wed, 22 Apr 2015 15:49:19 +0200
-Subject: [PATCH 7/7] split long line
-
----
- Makefile | 17 ++++++++++++++++-
- 1 file changed, 16 insertions(+), 1 deletion(-)
-
-diff --git a/Makefile b/Makefile
-index 6540d81..0ab04a5 100644
---- a/Makefile
-+++ b/Makefile
-@@ -1,7 +1,22 @@
- CC = g++
- CFLAGS = -Wall -I. -I./sam -I./boost -L./sam
- COFLAGS = -O3 -ffast-math -c
--PROGRAMS = rsem-extract-reference-transcripts rsem-synthesis-reference-transcripts rsem-preref rsem-parse-alignments rsem-build-read-index rsem-run-em rsem-tbam2gbam rsem-run-gibbs rsem-calculate-credibility-intervals rsem-simulate-reads rsem-bam2wig rsem-get-unique rsem-bam2readdepth rsem-sam-validator rsem-scan-for-paired-end-reads
-+PROGRAMS = \
-+  rsem-extract-reference-transcripts \
-+  rsem-synthesis-reference-transcripts \
-+  rsem-preref \
-+  rsem-parse-alignments \
-+  rsem-build-read-index \
-+  rsem-run-em \
-+  rsem-tbam2gbam \
-+  rsem-run-gibbs \
-+  rsem-calculate-credibility-intervals \
-+  rsem-simulate-reads \
-+  rsem-bam2wig \
-+  rsem-get-unique \
-+  rsem-bam2readdepth \
-+  rsem-sam-validator \
-+  rsem-scan-for-paired-end-reads
- 
- .PHONY : all ebseq clean
- 
diff --git a/gnu/packages/patches/soundconverter-remove-gconf-dependency.patch b/gnu/packages/patches/soundconverter-remove-gconf-dependency.patch
new file mode 100644
index 0000000000..f065b9a3d4
--- /dev/null
+++ b/gnu/packages/patches/soundconverter-remove-gconf-dependency.patch
@@ -0,0 +1,83 @@
+From: Sebastian Ramacher <sebastian@ramacher.at>
+Date: Fri, 6 Apr 2018 13:25:35 +0200
+Subject: Only fetch profiles if GConf is still available
+
+---
+ bin/soundconverter.py       |  1 -
+ soundconverter/gstreamer.py | 44 ++++++++++++++++++++++++--------------------
+ 2 files changed, 24 insertions(+), 21 deletions(-)
+
+diff --git a/bin/soundconverter.py b/bin/soundconverter.py
+index 39055ce..5198443 100644
+--- a/bin/soundconverter.py
++++ b/bin/soundconverter.py
+@@ -66,7 +66,6 @@ def _check_libs():
+         import gi
+         gi.require_version('Gst', '1.0')
+         gi.require_version('Gtk', '3.0')
+-        gi.require_version('GConf', '2.0')
+         from gi.repository import GObject
+         # force GIL creation - see https://bugzilla.gnome.org/show_bug.cgi?id=710447
+         import threading
+diff --git a/soundconverter/gstreamer.py b/soundconverter/gstreamer.py
+index 23aaa9b..211b052 100644
+--- a/soundconverter/gstreamer.py
++++ b/soundconverter/gstreamer.py
+@@ -25,7 +25,7 @@ from urllib.parse import urlparse
+ from gettext import gettext as _
+ 
+ import gi
+-from gi.repository import Gst, Gtk, GObject, GConf, Gio
++from gi.repository import Gst, Gtk, GObject, Gio
+ 
+ from soundconverter.fileoperations import vfs_encode_filename, file_encode_filename
+ from soundconverter.fileoperations import unquote_filename, vfs_makedirs, vfs_unlink
+@@ -66,25 +66,29 @@ _GCONF_PROFILE_LIST_PATH = "/system/gstreamer/1.0/audio/global/profile_list"
+ audio_profiles_list = []
+ audio_profiles_dict = {}
+ 
+-_GCONF = GConf.Client.get_default()
+-profiles = _GCONF.all_dirs(_GCONF_PROFILE_LIST_PATH)
+-for name in profiles:
+-    if _GCONF.get_bool(_GCONF_PROFILE_PATH + name + "/active"):
+-        # get profile
+-        description = _GCONF.get_string(_GCONF_PROFILE_PATH + name + "/name")
+-        extension = _GCONF.get_string(_GCONF_PROFILE_PATH + name + "/extension")
+-        pipeline = _GCONF.get_string(_GCONF_PROFILE_PATH + name + "/pipeline")
+-        # check profile validity
+-        if not extension or not pipeline:
+-            continue
+-        if not description:
+-            description = extension
+-        if description in audio_profiles_dict:
+-            continue
+-            # store
+-        profile = description, extension, pipeline
+-        audio_profiles_list.append(profile)
+-        audio_profiles_dict[description] = profile
++try:
++    from gi.repository import GConf
++    _GCONF = GConf.Client.get_default()
++    profiles = _GCONF.all_dirs(_GCONF_PROFILE_LIST_PATH)
++    for name in profiles:
++        if _GCONF.get_bool(_GCONF_PROFILE_PATH + name + "/active"):
++            # get profile
++            description = _GCONF.get_string(_GCONF_PROFILE_PATH + name + "/name")
++            extension = _GCONF.get_string(_GCONF_PROFILE_PATH + name + "/extension")
++            pipeline = _GCONF.get_string(_GCONF_PROFILE_PATH + name + "/pipeline")
++            # check profile validity
++            if not extension or not pipeline:
++                continue
++            if not description:
++                description = extension
++            if description in audio_profiles_dict:
++                continue
++                # store
++            profile = description, extension, pipeline
++            audio_profiles_list.append(profile)
++            audio_profiles_dict[description] = profile
++except ImportError:
++    pass
+ 
+ required_elements = ('decodebin', 'fakesink', 'audioconvert', 'typefind', 'audiorate')
+ for element in required_elements:
diff --git a/gnu/packages/patches/swig-guile-gc.patch b/gnu/packages/patches/swig-guile-gc.patch
new file mode 100644
index 0000000000..0e745a6247
--- /dev/null
+++ b/gnu/packages/patches/swig-guile-gc.patch
@@ -0,0 +1,76 @@
+Fix garbage collection for Guile versions >= 2.0.12.  This issue showed
+up when running the tests on i686-linux.
+
+Taken from this upstream commit:
+https://github.com/swig/swig/commit/38f2ab0c30e369e63bbd0a6152108488d0de68e1
+
+diff --git a/Lib/guile/guile_scm_run.swg b/Lib/guile/guile_scm_run.swg
+index 274f197158..0d04cb7c62 100644
+--- a/Lib/guile/guile_scm_run.swg
++++ b/Lib/guile/guile_scm_run.swg
+@@ -99,6 +99,7 @@ SWIG_Guile_scm2newstr(SCM str, size_t *len) {
+ static int swig_initialized = 0;
+ static scm_t_bits swig_tag = 0;
+ static scm_t_bits swig_collectable_tag = 0;
++static scm_t_bits swig_finalized_tag = 0;
+ static scm_t_bits swig_destroyed_tag = 0;
+ static scm_t_bits swig_member_function_tag = 0;
+ static SCM swig_make_func = SCM_EOL;
+@@ -163,7 +164,19 @@ SWIG_Guile_PointerType(SCM object)
+   }
+   else scm_wrong_type_arg("SWIG-Guile-PointerType", 1, object);
+ }
+-  
++
++SWIGINTERN int
++SWIG_Guile_IsValidSmob(SCM smob)
++{
++  /* We do not accept smobs representing destroyed pointers, but we have to
++     allow finalized smobs because Guile >= 2.0.12 sets all smob instances
++     to the 'finalized' type before calling their 'free' function. This change
++     was introduced to Guile in commit 8dff3af087c6eaa83ae0d72aa8b22aef5c65d65d */
++  return SCM_SMOB_PREDICATE(swig_tag, smob)
++    || SCM_SMOB_PREDICATE(swig_collectable_tag, smob)
++    || SCM_SMOB_PREDICATE(swig_finalized_tag, smob);
++}
++
+ SWIGINTERN int
+ SWIG_Guile_ConvertPtr(SCM s, void **result, swig_type_info *type, int flags)
+ {
+@@ -179,8 +192,7 @@ SWIG_Guile_ConvertPtr(SCM s, void **result, swig_type_info *type, int flags)
+     *result = SCM_POINTER_VALUE(s);
+     return SWIG_OK;
+ #endif /* if SCM_MAJOR_VERSION >= 2 */
+-  } else if (SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob)) {
+-    /* we do not accept smobs representing destroyed pointers */
++  } else if (SWIG_Guile_IsValidSmob(smob)) {
+     from = (swig_type_info *) SCM_CELL_WORD_2(smob);
+     if (!from) return SWIG_ERROR;
+     if (type) {
+@@ -239,7 +251,7 @@ SWIG_Guile_MarkPointerNoncollectable(SCM s)
+ {
+   SCM smob = SWIG_Guile_GetSmob(s);
+   if (!SCM_NULLP(smob)) {
+-    if (SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob)) {
++    if (SWIG_Guile_IsValidSmob(smob)) {
+       SCM_SET_CELL_TYPE(smob, swig_tag);
+     }
+     else scm_wrong_type_arg(NULL, 0, s);
+@@ -252,7 +264,7 @@ SWIG_Guile_MarkPointerDestroyed(SCM s)
+ {
+   SCM smob = SWIG_Guile_GetSmob(s);
+   if (!SCM_NULLP(smob)) {
+-    if (SCM_SMOB_PREDICATE(swig_tag, smob) || SCM_SMOB_PREDICATE(swig_collectable_tag, smob)) {
++    if (SWIG_Guile_IsValidSmob(smob)) {
+       SCM_SET_CELL_TYPE(smob, swig_destroyed_tag);
+     }
+     else scm_wrong_type_arg(NULL, 0, s);
+@@ -419,6 +431,8 @@ SWIG_Guile_Init ()
+     scm_set_smob_print(swig_collectable_tag, print_collectable_swig);
+     scm_set_smob_equalp(swig_collectable_tag, equalp_swig);
+     scm_set_smob_free(swig_collectable_tag, free_swig);
++    /* For Guile >= 2.0.12. See libguile/smob.c:clear_smobnum */
++    swig_finalized_tag = swig_collectable_tag & ~0xff00;
+   }
+   if (ensure_smob_tag(swig_module, &swig_destroyed_tag,
+ 		      "destroyed-swig-pointer", "destroyed-swig-pointer-tag")) {
diff --git a/gnu/packages/patches/x265-arm-asm-primitives.patch b/gnu/packages/patches/x265-arm-asm-primitives.patch
deleted file mode 100644
index f49aafe577..0000000000
--- a/gnu/packages/patches/x265-arm-asm-primitives.patch
+++ /dev/null
@@ -1,360 +0,0 @@
-From <https://git.busybox.net/buildroot/tree/package/x265/0003-arm-asm-primitives.patch?id=57d4a27eaf1a9e59d767c321e7b7500c5060a2ac>.
-This fixes build errors like:
-
-  cd /tmp/guix-build-x265-2.8.drv-0/x265_2.8/build/encoder && /gnu/store/cd5q2pni1d95fs3cdabbclyh9hqhw2nq-gcc-5.5.0/bin/c++  -DEXPORT_C_API=1 -DHAVE_ARMV6=1 -DHAVE_INT_TYPES_H=1 -DHAVE_NEON -DHIGH_BIT_DEPTH=0 -DX265_ARCH_ARM=1 -DX265_DEPTH=8 -DX265_NS=x265 -D__STDC_LIMIT_MACROS=1 -I/tmp/guix-build-x265-2.8.drv-0/x265_2.8/source/. -I/tmp/guix-build-x265-2.8.drv-0/x265_2.8/source/common -I/tmp/guix-build-x265-2.8.drv-0/x265_2.8/source/encoder -I/tmp/guix-build-x265-2.8.drv-0/x265_2.8/build  -O2 -g -DNDEBUG   -Wall -Wextra -Wshadow -std=gnu++98 -fPIC -mcpu=native -mfloat-abi=hard -mfpu=neon -marm -fPIC -Wno-array-bounds -ffast-math -fno-exceptions -Wno-uninitialized -o CMakeFiles/encoder.dir/search.cpp.o -c /tmp/guix-build-x265-2.8.drv-0/x265_2.8/source/encoder/search.cpp
-  /tmp/guix-build-x265-2.8.drv-0/x265_2.8/source/common/arm/asm-primitives.cpp:437:38: error: incompatible types in assignment of ?void(const pixel*, intptr_t, int16_t*, intptr_t) {aka void(const unsigned char*, int, short int*, int)}? to ?void (* [2])(const pixel*, intptr_t, int16_t*, intptr_t) {aka void (* [2])(const unsigned char*, int, short int*, int)}?
-	   p.pu[LUMA_64x48].convert_p2s = PFX(filterPixelToShort_64x48_neon);
-					^
-
-Downloaded from upstream bug report:
-https://bitbucket.org/multicoreware/x265/issues/406
-
-Signed-off-by: Bernd Kuhls <bernd.kuhls@t-online.de>
-
---- ./source/common/arm/asm-primitives.cpp.orig	2018-05-21 02:33:10.000000000 -0600
-+++ ./source/common/arm/asm-primitives.cpp	2018-05-28 20:38:37.302378303 -0600
-@@ -48,77 +48,77 @@ void setupAssemblyPrimitives(EncoderPrim
-         p.ssim_4x4x2_core = PFX(ssim_4x4x2_core_neon);
- 
-         // addAvg
--         p.pu[LUMA_4x4].addAvg   = PFX(addAvg_4x4_neon);
--         p.pu[LUMA_4x8].addAvg   = PFX(addAvg_4x8_neon);
--         p.pu[LUMA_4x16].addAvg  = PFX(addAvg_4x16_neon);
--         p.pu[LUMA_8x4].addAvg   = PFX(addAvg_8x4_neon);
--         p.pu[LUMA_8x8].addAvg   = PFX(addAvg_8x8_neon);
--         p.pu[LUMA_8x16].addAvg  = PFX(addAvg_8x16_neon);
--         p.pu[LUMA_8x32].addAvg  = PFX(addAvg_8x32_neon);
--         p.pu[LUMA_12x16].addAvg = PFX(addAvg_12x16_neon);
--         p.pu[LUMA_16x4].addAvg  = PFX(addAvg_16x4_neon);
--         p.pu[LUMA_16x8].addAvg  = PFX(addAvg_16x8_neon);
--         p.pu[LUMA_16x12].addAvg = PFX(addAvg_16x12_neon);
--         p.pu[LUMA_16x16].addAvg = PFX(addAvg_16x16_neon);
--         p.pu[LUMA_16x32].addAvg = PFX(addAvg_16x32_neon);
--         p.pu[LUMA_16x64].addAvg = PFX(addAvg_16x64_neon);
--         p.pu[LUMA_24x32].addAvg = PFX(addAvg_24x32_neon);
--         p.pu[LUMA_32x8].addAvg  = PFX(addAvg_32x8_neon);
--         p.pu[LUMA_32x16].addAvg = PFX(addAvg_32x16_neon);
--         p.pu[LUMA_32x24].addAvg = PFX(addAvg_32x24_neon);
--         p.pu[LUMA_32x32].addAvg = PFX(addAvg_32x32_neon);
--         p.pu[LUMA_32x64].addAvg = PFX(addAvg_32x64_neon);
--         p.pu[LUMA_48x64].addAvg = PFX(addAvg_48x64_neon);
--         p.pu[LUMA_64x16].addAvg = PFX(addAvg_64x16_neon);
--         p.pu[LUMA_64x32].addAvg = PFX(addAvg_64x32_neon);
--         p.pu[LUMA_64x48].addAvg = PFX(addAvg_64x48_neon);
--         p.pu[LUMA_64x64].addAvg = PFX(addAvg_64x64_neon);
-+         p.pu[LUMA_4x4].addAvg[ALIGNED]   = PFX(addAvg_4x4_neon);
-+         p.pu[LUMA_4x8].addAvg[ALIGNED]   = PFX(addAvg_4x8_neon);
-+         p.pu[LUMA_4x16].addAvg[ALIGNED]  = PFX(addAvg_4x16_neon);
-+         p.pu[LUMA_8x4].addAvg[ALIGNED]   = PFX(addAvg_8x4_neon);
-+         p.pu[LUMA_8x8].addAvg[ALIGNED]   = PFX(addAvg_8x8_neon);
-+         p.pu[LUMA_8x16].addAvg[ALIGNED]  = PFX(addAvg_8x16_neon);
-+         p.pu[LUMA_8x32].addAvg[ALIGNED]  = PFX(addAvg_8x32_neon);
-+         p.pu[LUMA_12x16].addAvg[ALIGNED] = PFX(addAvg_12x16_neon);
-+         p.pu[LUMA_16x4].addAvg[ALIGNED]  = PFX(addAvg_16x4_neon);
-+         p.pu[LUMA_16x8].addAvg[ALIGNED]  = PFX(addAvg_16x8_neon);
-+         p.pu[LUMA_16x12].addAvg[ALIGNED] = PFX(addAvg_16x12_neon);
-+         p.pu[LUMA_16x16].addAvg[ALIGNED] = PFX(addAvg_16x16_neon);
-+         p.pu[LUMA_16x32].addAvg[ALIGNED] = PFX(addAvg_16x32_neon);
-+         p.pu[LUMA_16x64].addAvg[ALIGNED] = PFX(addAvg_16x64_neon);
-+         p.pu[LUMA_24x32].addAvg[ALIGNED] = PFX(addAvg_24x32_neon);
-+         p.pu[LUMA_32x8].addAvg[ALIGNED]  = PFX(addAvg_32x8_neon);
-+         p.pu[LUMA_32x16].addAvg[ALIGNED] = PFX(addAvg_32x16_neon);
-+         p.pu[LUMA_32x24].addAvg[ALIGNED] = PFX(addAvg_32x24_neon);
-+         p.pu[LUMA_32x32].addAvg[ALIGNED] = PFX(addAvg_32x32_neon);
-+         p.pu[LUMA_32x64].addAvg[ALIGNED] = PFX(addAvg_32x64_neon);
-+         p.pu[LUMA_48x64].addAvg[ALIGNED] = PFX(addAvg_48x64_neon);
-+         p.pu[LUMA_64x16].addAvg[ALIGNED] = PFX(addAvg_64x16_neon);
-+         p.pu[LUMA_64x32].addAvg[ALIGNED] = PFX(addAvg_64x32_neon);
-+         p.pu[LUMA_64x48].addAvg[ALIGNED] = PFX(addAvg_64x48_neon);
-+         p.pu[LUMA_64x64].addAvg[ALIGNED] = PFX(addAvg_64x64_neon);
- 
-         // chroma addAvg
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x2].addAvg   = PFX(addAvg_4x2_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x4].addAvg   = PFX(addAvg_4x4_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x8].addAvg   = PFX(addAvg_4x8_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x16].addAvg  = PFX(addAvg_4x16_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_6x8].addAvg   = PFX(addAvg_6x8_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x2].addAvg   = PFX(addAvg_8x2_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x4].addAvg   = PFX(addAvg_8x4_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x6].addAvg   = PFX(addAvg_8x6_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x8].addAvg   = PFX(addAvg_8x8_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x16].addAvg  = PFX(addAvg_8x16_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x32].addAvg  = PFX(addAvg_8x32_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_12x16].addAvg = PFX(addAvg_12x16_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x4].addAvg  = PFX(addAvg_16x4_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x8].addAvg  = PFX(addAvg_16x8_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x12].addAvg = PFX(addAvg_16x12_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x16].addAvg = PFX(addAvg_16x16_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x32].addAvg = PFX(addAvg_16x32_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_24x32].addAvg = PFX(addAvg_24x32_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x8].addAvg  = PFX(addAvg_32x8_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x16].addAvg = PFX(addAvg_32x16_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x24].addAvg = PFX(addAvg_32x24_neon);
--        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x32].addAvg = PFX(addAvg_32x32_neon);
--
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x8].addAvg   = PFX(addAvg_4x8_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x16].addAvg  = PFX(addAvg_4x16_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x32].addAvg  = PFX(addAvg_4x32_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_6x16].addAvg  = PFX(addAvg_6x16_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x4].addAvg   = PFX(addAvg_8x4_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x8].addAvg   = PFX(addAvg_8x8_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x12].addAvg  = PFX(addAvg_8x12_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x16].addAvg  = PFX(addAvg_8x16_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x32].addAvg  = PFX(addAvg_8x32_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x64].addAvg  = PFX(addAvg_8x64_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_12x32].addAvg = PFX(addAvg_12x32_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x8].addAvg  = PFX(addAvg_16x8_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x16].addAvg = PFX(addAvg_16x16_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x24].addAvg = PFX(addAvg_16x24_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x32].addAvg = PFX(addAvg_16x32_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x64].addAvg = PFX(addAvg_16x64_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_24x64].addAvg = PFX(addAvg_24x64_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x16].addAvg = PFX(addAvg_32x16_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x32].addAvg = PFX(addAvg_32x32_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x48].addAvg = PFX(addAvg_32x48_neon);
--        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x64].addAvg = PFX(addAvg_32x64_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x2].addAvg[ALIGNED]   = PFX(addAvg_4x2_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x4].addAvg[ALIGNED]   = PFX(addAvg_4x4_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x8].addAvg[ALIGNED]   = PFX(addAvg_4x8_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_4x16].addAvg[ALIGNED]  = PFX(addAvg_4x16_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_6x8].addAvg[ALIGNED]   = PFX(addAvg_6x8_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x2].addAvg[ALIGNED]   = PFX(addAvg_8x2_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x4].addAvg[ALIGNED]   = PFX(addAvg_8x4_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x6].addAvg[ALIGNED]   = PFX(addAvg_8x6_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x8].addAvg[ALIGNED]   = PFX(addAvg_8x8_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x16].addAvg[ALIGNED]  = PFX(addAvg_8x16_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_8x32].addAvg[ALIGNED]  = PFX(addAvg_8x32_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_12x16].addAvg[ALIGNED] = PFX(addAvg_12x16_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x4].addAvg[ALIGNED]  = PFX(addAvg_16x4_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x8].addAvg[ALIGNED]  = PFX(addAvg_16x8_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x12].addAvg[ALIGNED] = PFX(addAvg_16x12_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x16].addAvg[ALIGNED] = PFX(addAvg_16x16_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_16x32].addAvg[ALIGNED] = PFX(addAvg_16x32_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_24x32].addAvg[ALIGNED] = PFX(addAvg_24x32_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x8].addAvg[ALIGNED]  = PFX(addAvg_32x8_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x16].addAvg[ALIGNED] = PFX(addAvg_32x16_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x24].addAvg[ALIGNED] = PFX(addAvg_32x24_neon);
-+        p.chroma[X265_CSP_I420].pu[CHROMA_420_32x32].addAvg[ALIGNED] = PFX(addAvg_32x32_neon);
-+
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x8].addAvg[ALIGNED]   = PFX(addAvg_4x8_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x16].addAvg[ALIGNED]  = PFX(addAvg_4x16_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_4x32].addAvg[ALIGNED]  = PFX(addAvg_4x32_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_6x16].addAvg[ALIGNED]  = PFX(addAvg_6x16_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x4].addAvg[ALIGNED]   = PFX(addAvg_8x4_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x8].addAvg[ALIGNED]   = PFX(addAvg_8x8_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x12].addAvg[ALIGNED]  = PFX(addAvg_8x12_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x16].addAvg[ALIGNED]  = PFX(addAvg_8x16_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x32].addAvg[ALIGNED]  = PFX(addAvg_8x32_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_8x64].addAvg[ALIGNED]  = PFX(addAvg_8x64_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_12x32].addAvg[ALIGNED] = PFX(addAvg_12x32_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x8].addAvg[ALIGNED]  = PFX(addAvg_16x8_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x16].addAvg[ALIGNED] = PFX(addAvg_16x16_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x24].addAvg[ALIGNED] = PFX(addAvg_16x24_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x32].addAvg[ALIGNED] = PFX(addAvg_16x32_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_16x64].addAvg[ALIGNED] = PFX(addAvg_16x64_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_24x64].addAvg[ALIGNED] = PFX(addAvg_24x64_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x16].addAvg[ALIGNED] = PFX(addAvg_32x16_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x32].addAvg[ALIGNED] = PFX(addAvg_32x32_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x48].addAvg[ALIGNED] = PFX(addAvg_32x48_neon);
-+        p.chroma[X265_CSP_I422].pu[CHROMA_422_32x64].addAvg[ALIGNED] = PFX(addAvg_32x64_neon);
- 
-         // quant
-          p.quant = PFX(quant_neon);
-@@ -402,7 +402,7 @@ void setupAssemblyPrimitives(EncoderPrim
-         p.scale2D_64to32  = PFX(scale2D_64to32_neon);
- 
-         // scale1D_128to64
--        p.scale1D_128to64 = PFX(scale1D_128to64_neon);
-+        p.scale1D_128to64[ALIGNED] = PFX(scale1D_128to64_neon);
- 
-         // copy_count
-         p.cu[BLOCK_4x4].copy_cnt     = PFX(copy_cnt_4_neon);
-@@ -411,37 +411,37 @@ void setupAssemblyPrimitives(EncoderPrim
-         p.cu[BLOCK_32x32].copy_cnt   = PFX(copy_cnt_32_neon);
- 
-         // filterPixelToShort
--        p.pu[LUMA_4x4].convert_p2s   = PFX(filterPixelToShort_4x4_neon);
--        p.pu[LUMA_4x8].convert_p2s   = PFX(filterPixelToShort_4x8_neon);
--        p.pu[LUMA_4x16].convert_p2s  = PFX(filterPixelToShort_4x16_neon);
--        p.pu[LUMA_8x4].convert_p2s   = PFX(filterPixelToShort_8x4_neon);
--        p.pu[LUMA_8x8].convert_p2s   = PFX(filterPixelToShort_8x8_neon);
--        p.pu[LUMA_8x16].convert_p2s  = PFX(filterPixelToShort_8x16_neon);
--        p.pu[LUMA_8x32].convert_p2s  = PFX(filterPixelToShort_8x32_neon);
--        p.pu[LUMA_12x16].convert_p2s = PFX(filterPixelToShort_12x16_neon);
--        p.pu[LUMA_16x4].convert_p2s  = PFX(filterPixelToShort_16x4_neon);
--        p.pu[LUMA_16x8].convert_p2s  = PFX(filterPixelToShort_16x8_neon);
--        p.pu[LUMA_16x12].convert_p2s = PFX(filterPixelToShort_16x12_neon);
--        p.pu[LUMA_16x16].convert_p2s = PFX(filterPixelToShort_16x16_neon);
--        p.pu[LUMA_16x32].convert_p2s = PFX(filterPixelToShort_16x32_neon);
--        p.pu[LUMA_16x64].convert_p2s = PFX(filterPixelToShort_16x64_neon);
--        p.pu[LUMA_24x32].convert_p2s = PFX(filterPixelToShort_24x32_neon);
--        p.pu[LUMA_32x8].convert_p2s  = PFX(filterPixelToShort_32x8_neon);
--        p.pu[LUMA_32x16].convert_p2s = PFX(filterPixelToShort_32x16_neon);
--        p.pu[LUMA_32x24].convert_p2s = PFX(filterPixelToShort_32x24_neon);
--        p.pu[LUMA_32x32].convert_p2s = PFX(filterPixelToShort_32x32_neon);
--        p.pu[LUMA_32x64].convert_p2s = PFX(filterPixelToShort_32x64_neon);
--        p.pu[LUMA_48x64].convert_p2s = PFX(filterPixelToShort_48x64_neon);
--        p.pu[LUMA_64x16].convert_p2s = PFX(filterPixelToShort_64x16_neon);
--        p.pu[LUMA_64x32].convert_p2s = PFX(filterPixelToShort_64x32_neon);
--        p.pu[LUMA_64x48].convert_p2s = PFX(filterPixelToShort_64x48_neon);
--        p.pu[LUMA_64x64].convert_p2s = PFX(filterPixelToShort_64x64_neon);
-+        p.pu[LUMA_4x4].convert_p2s[ALIGNED]   = PFX(filterPixelToShort_4x4_neon);
-+        p.pu[LUMA_4x8].convert_p2s[ALIGNED]   = PFX(filterPixelToShort_4x8_neon);
-+        p.pu[LUMA_4x16].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_4x16_neon);
-+        p.pu[LUMA_8x4].convert_p2s[ALIGNED]   = PFX(filterPixelToShort_8x4_neon);
-+        p.pu[LUMA_8x8].convert_p2s[ALIGNED]   = PFX(filterPixelToShort_8x8_neon);
-+        p.pu[LUMA_8x16].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_8x16_neon);
-+        p.pu[LUMA_8x32].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_8x32_neon);
-+        p.pu[LUMA_12x16].convert_p2s[ALIGNED] = PFX(filterPixelToShort_12x16_neon);
-+        p.pu[LUMA_16x4].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_16x4_neon);
-+        p.pu[LUMA_16x8].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_16x8_neon);
-+        p.pu[LUMA_16x12].convert_p2s[ALIGNED] = PFX(filterPixelToShort_16x12_neon);
-+        p.pu[LUMA_16x16].convert_p2s[ALIGNED] = PFX(filterPixelToShort_16x16_neon);
-+        p.pu[LUMA_16x32].convert_p2s[ALIGNED] = PFX(filterPixelToShort_16x32_neon);
-+        p.pu[LUMA_16x64].convert_p2s[ALIGNED] = PFX(filterPixelToShort_16x64_neon);
-+        p.pu[LUMA_24x32].convert_p2s[ALIGNED] = PFX(filterPixelToShort_24x32_neon);
-+        p.pu[LUMA_32x8].convert_p2s[ALIGNED]  = PFX(filterPixelToShort_32x8_neon);
-+        p.pu[LUMA_32x16].convert_p2s[ALIGNED] = PFX(filterPixelToShort_32x16_neon);
-+        p.pu[LUMA_32x24].convert_p2s[ALIGNED] = PFX(filterPixelToShort_32x24_neon);
-+        p.pu[LUMA_32x32].convert_p2s[ALIGNED] = PFX(filterPixelToShort_32x32_neon);
-+        p.pu[LUMA_32x64].convert_p2s[ALIGNED] = PFX(filterPixelToShort_32x64_neon);
-+        p.pu[LUMA_48x64].convert_p2s[ALIGNED] = PFX(filterPixelToShort_48x64_neon);
-+        p.pu[LUMA_64x16].convert_p2s[ALIGNED] = PFX(filterPixelToShort_64x16_neon);
-+        p.pu[LUMA_64x32].convert_p2s[ALIGNED] = PFX(filterPixelToShort_64x32_neon);
-+        p.pu[LUMA_64x48].convert_p2s[ALIGNED] = PFX(filterPixelToShort_64x48_neon);
-+        p.pu[LUMA_64x64].convert_p2s[ALIGNED] = PFX(filterPixelToShort_64x64_neon);
- 
-         // Block_fill
--        p.cu[BLOCK_4x4].blockfill_s   = PFX(blockfill_s_4x4_neon);
--        p.cu[BLOCK_8x8].blockfill_s   = PFX(blockfill_s_8x8_neon);
--        p.cu[BLOCK_16x16].blockfill_s = PFX(blockfill_s_16x16_neon);
--        p.cu[BLOCK_32x32].blockfill_s = PFX(blockfill_s_32x32_neon);
-+        p.cu[BLOCK_4x4].blockfill_s[ALIGNED]   = PFX(blockfill_s_4x4_neon);
-+        p.cu[BLOCK_8x8].blockfill_s[ALIGNED]   = PFX(blockfill_s_8x8_neon);
-+        p.cu[BLOCK_16x16].blockfill_s[ALIGNED] = PFX(blockfill_s_16x16_neon);
-+        p.cu[BLOCK_32x32].blockfill_s[ALIGNED] = PFX(blockfill_s_32x32_neon);
- 
-         // Blockcopy_ss
-         p.cu[BLOCK_4x4].copy_ss   = PFX(blockcopy_ss_4x4_neon);
-@@ -495,21 +495,21 @@ void setupAssemblyPrimitives(EncoderPrim
-         p.chroma[X265_CSP_I422].cu[BLOCK_422_32x64].copy_sp = PFX(blockcopy_sp_32x64_neon);
- 
-         // pixel_add_ps
--        p.cu[BLOCK_4x4].add_ps   = PFX(pixel_add_ps_4x4_neon);
--        p.cu[BLOCK_8x8].add_ps   = PFX(pixel_add_ps_8x8_neon);
--        p.cu[BLOCK_16x16].add_ps = PFX(pixel_add_ps_16x16_neon);
--        p.cu[BLOCK_32x32].add_ps = PFX(pixel_add_ps_32x32_neon);
--        p.cu[BLOCK_64x64].add_ps = PFX(pixel_add_ps_64x64_neon);
-+        p.cu[BLOCK_4x4].add_ps[ALIGNED]   = PFX(pixel_add_ps_4x4_neon);
-+        p.cu[BLOCK_8x8].add_ps[ALIGNED]   = PFX(pixel_add_ps_8x8_neon);
-+        p.cu[BLOCK_16x16].add_ps[ALIGNED] = PFX(pixel_add_ps_16x16_neon);
-+        p.cu[BLOCK_32x32].add_ps[ALIGNED] = PFX(pixel_add_ps_32x32_neon);
-+        p.cu[BLOCK_64x64].add_ps[ALIGNED] = PFX(pixel_add_ps_64x64_neon);
- 
-         // chroma add_ps
--        p.chroma[X265_CSP_I420].cu[BLOCK_420_4x4].add_ps   = PFX(pixel_add_ps_4x4_neon);
--        p.chroma[X265_CSP_I420].cu[BLOCK_420_8x8].add_ps   = PFX(pixel_add_ps_8x8_neon);
--        p.chroma[X265_CSP_I420].cu[BLOCK_420_16x16].add_ps = PFX(pixel_add_ps_16x16_neon);
--        p.chroma[X265_CSP_I420].cu[BLOCK_420_32x32].add_ps = PFX(pixel_add_ps_32x32_neon);
--        p.chroma[X265_CSP_I422].cu[BLOCK_422_4x8].add_ps   = PFX(pixel_add_ps_4x8_neon);
--        p.chroma[X265_CSP_I422].cu[BLOCK_422_8x16].add_ps  = PFX(pixel_add_ps_8x16_neon);
--        p.chroma[X265_CSP_I422].cu[BLOCK_422_16x32].add_ps = PFX(pixel_add_ps_16x32_neon);
--        p.chroma[X265_CSP_I422].cu[BLOCK_422_32x64].add_ps = PFX(pixel_add_ps_32x64_neon);
-+        p.chroma[X265_CSP_I420].cu[BLOCK_420_4x4].add_ps[ALIGNED]   = PFX(pixel_add_ps_4x4_neon);
-+        p.chroma[X265_CSP_I420].cu[BLOCK_420_8x8].add_ps[ALIGNED]   = PFX(pixel_add_ps_8x8_neon);
-+        p.chroma[X265_CSP_I420].cu[BLOCK_420_16x16].add_ps[ALIGNED] = PFX(pixel_add_ps_16x16_neon);
-+        p.chroma[X265_CSP_I420].cu[BLOCK_420_32x32].add_ps[ALIGNED] = PFX(pixel_add_ps_32x32_neon);
-+        p.chroma[X265_CSP_I422].cu[BLOCK_422_4x8].add_ps[ALIGNED]   = PFX(pixel_add_ps_4x8_neon);
-+        p.chroma[X265_CSP_I422].cu[BLOCK_422_8x16].add_ps[ALIGNED]  = PFX(pixel_add_ps_8x16_neon);
-+        p.chroma[X265_CSP_I422].cu[BLOCK_422_16x32].add_ps[ALIGNED] = PFX(pixel_add_ps_16x32_neon);
-+        p.chroma[X265_CSP_I422].cu[BLOCK_422_32x64].add_ps[ALIGNED] = PFX(pixel_add_ps_32x64_neon);
- 
-         // cpy2Dto1D_shr
-         p.cu[BLOCK_4x4].cpy2Dto1D_shr   = PFX(cpy2Dto1D_shr_4x4_neon);
-@@ -518,10 +518,10 @@ void setupAssemblyPrimitives(EncoderPrim
-         p.cu[BLOCK_32x32].cpy2Dto1D_shr = PFX(cpy2Dto1D_shr_32x32_neon);
- 
-         // ssd_s
--        p.cu[BLOCK_4x4].ssd_s   = PFX(pixel_ssd_s_4x4_neon);
--        p.cu[BLOCK_8x8].ssd_s   = PFX(pixel_ssd_s_8x8_neon);
--        p.cu[BLOCK_16x16].ssd_s = PFX(pixel_ssd_s_16x16_neon);
--        p.cu[BLOCK_32x32].ssd_s = PFX(pixel_ssd_s_32x32_neon);
-+        p.cu[BLOCK_4x4].ssd_s[ALIGNED]   = PFX(pixel_ssd_s_4x4_neon);
-+        p.cu[BLOCK_8x8].ssd_s[ALIGNED]   = PFX(pixel_ssd_s_8x8_neon);
-+        p.cu[BLOCK_16x16].ssd_s[ALIGNED] = PFX(pixel_ssd_s_16x16_neon);
-+        p.cu[BLOCK_32x32].ssd_s[ALIGNED] = PFX(pixel_ssd_s_32x32_neon);
- 
-         // sse_ss
-         p.cu[BLOCK_4x4].sse_ss   = PFX(pixel_sse_ss_4x4_neon);
-@@ -548,10 +548,10 @@ void setupAssemblyPrimitives(EncoderPrim
-         p.chroma[X265_CSP_I422].cu[BLOCK_422_32x64].sub_ps = PFX(pixel_sub_ps_32x64_neon);
- 
-         // calc_Residual
--        p.cu[BLOCK_4x4].calcresidual   = PFX(getResidual4_neon);
--        p.cu[BLOCK_8x8].calcresidual   = PFX(getResidual8_neon);
--        p.cu[BLOCK_16x16].calcresidual = PFX(getResidual16_neon);
--        p.cu[BLOCK_32x32].calcresidual = PFX(getResidual32_neon);
-+        p.cu[BLOCK_4x4].calcresidual[ALIGNED]   = PFX(getResidual4_neon);
-+        p.cu[BLOCK_8x8].calcresidual[ALIGNED]   = PFX(getResidual8_neon);
-+        p.cu[BLOCK_16x16].calcresidual[ALIGNED] = PFX(getResidual16_neon);
-+        p.cu[BLOCK_32x32].calcresidual[ALIGNED] = PFX(getResidual32_neon);
- 
-         // sse_pp
-         p.cu[BLOCK_4x4].sse_pp   = PFX(pixel_sse_pp_4x4_neon);
-@@ -722,31 +722,31 @@ void setupAssemblyPrimitives(EncoderPrim
-         p.pu[LUMA_64x64].sad_x4 = PFX(sad_x4_64x64_neon);
- 
-         // pixel_avg_pp
--        p.pu[LUMA_4x4].pixelavg_pp   = PFX(pixel_avg_pp_4x4_neon);
--        p.pu[LUMA_4x8].pixelavg_pp   = PFX(pixel_avg_pp_4x8_neon);
--        p.pu[LUMA_4x16].pixelavg_pp  = PFX(pixel_avg_pp_4x16_neon);
--        p.pu[LUMA_8x4].pixelavg_pp   = PFX(pixel_avg_pp_8x4_neon);
--        p.pu[LUMA_8x8].pixelavg_pp   = PFX(pixel_avg_pp_8x8_neon);
--        p.pu[LUMA_8x16].pixelavg_pp  = PFX(pixel_avg_pp_8x16_neon);
--        p.pu[LUMA_8x32].pixelavg_pp  = PFX(pixel_avg_pp_8x32_neon);
--        p.pu[LUMA_12x16].pixelavg_pp = PFX(pixel_avg_pp_12x16_neon);
--        p.pu[LUMA_16x4].pixelavg_pp  = PFX(pixel_avg_pp_16x4_neon);
--        p.pu[LUMA_16x8].pixelavg_pp  = PFX(pixel_avg_pp_16x8_neon);
--        p.pu[LUMA_16x12].pixelavg_pp = PFX(pixel_avg_pp_16x12_neon);
--        p.pu[LUMA_16x16].pixelavg_pp = PFX(pixel_avg_pp_16x16_neon);
--        p.pu[LUMA_16x32].pixelavg_pp = PFX(pixel_avg_pp_16x32_neon);
--        p.pu[LUMA_16x64].pixelavg_pp = PFX(pixel_avg_pp_16x64_neon);
--        p.pu[LUMA_24x32].pixelavg_pp = PFX(pixel_avg_pp_24x32_neon);
--        p.pu[LUMA_32x8].pixelavg_pp  = PFX(pixel_avg_pp_32x8_neon);
--        p.pu[LUMA_32x16].pixelavg_pp = PFX(pixel_avg_pp_32x16_neon);
--        p.pu[LUMA_32x24].pixelavg_pp = PFX(pixel_avg_pp_32x24_neon);
--        p.pu[LUMA_32x32].pixelavg_pp = PFX(pixel_avg_pp_32x32_neon);
--        p.pu[LUMA_32x64].pixelavg_pp = PFX(pixel_avg_pp_32x64_neon);
--        p.pu[LUMA_48x64].pixelavg_pp = PFX(pixel_avg_pp_48x64_neon);
--        p.pu[LUMA_64x16].pixelavg_pp = PFX(pixel_avg_pp_64x16_neon);
--        p.pu[LUMA_64x32].pixelavg_pp = PFX(pixel_avg_pp_64x32_neon);
--        p.pu[LUMA_64x48].pixelavg_pp = PFX(pixel_avg_pp_64x48_neon);
--        p.pu[LUMA_64x64].pixelavg_pp = PFX(pixel_avg_pp_64x64_neon);
-+        p.pu[LUMA_4x4].pixelavg_pp[ALIGNED]   = PFX(pixel_avg_pp_4x4_neon);
-+        p.pu[LUMA_4x8].pixelavg_pp[ALIGNED]   = PFX(pixel_avg_pp_4x8_neon);
-+        p.pu[LUMA_4x16].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_4x16_neon);
-+        p.pu[LUMA_8x4].pixelavg_pp[ALIGNED]   = PFX(pixel_avg_pp_8x4_neon);
-+        p.pu[LUMA_8x8].pixelavg_pp[ALIGNED]   = PFX(pixel_avg_pp_8x8_neon);
-+        p.pu[LUMA_8x16].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_8x16_neon);
-+        p.pu[LUMA_8x32].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_8x32_neon);
-+        p.pu[LUMA_12x16].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_12x16_neon);
-+        p.pu[LUMA_16x4].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_16x4_neon);
-+        p.pu[LUMA_16x8].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_16x8_neon);
-+        p.pu[LUMA_16x12].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_16x12_neon);
-+        p.pu[LUMA_16x16].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_16x16_neon);
-+        p.pu[LUMA_16x32].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_16x32_neon);
-+        p.pu[LUMA_16x64].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_16x64_neon);
-+        p.pu[LUMA_24x32].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_24x32_neon);
-+        p.pu[LUMA_32x8].pixelavg_pp[ALIGNED]  = PFX(pixel_avg_pp_32x8_neon);
-+        p.pu[LUMA_32x16].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_32x16_neon);
-+        p.pu[LUMA_32x24].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_32x24_neon);
-+        p.pu[LUMA_32x32].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_32x32_neon);
-+        p.pu[LUMA_32x64].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_32x64_neon);
-+        p.pu[LUMA_48x64].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_48x64_neon);
-+        p.pu[LUMA_64x16].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_64x16_neon);
-+        p.pu[LUMA_64x32].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_64x32_neon);
-+        p.pu[LUMA_64x48].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_64x48_neon);
-+        p.pu[LUMA_64x64].pixelavg_pp[ALIGNED] = PFX(pixel_avg_pp_64x64_neon);
- 
-         // planecopy
-         p.planecopy_cp = PFX(pixel_planecopy_cp_neon);
diff --git a/gnu/packages/patches/x265-detect512-all-arches.patch b/gnu/packages/patches/x265-detect512-all-arches.patch
new file mode 100644
index 0000000000..4d39d868fd
--- /dev/null
+++ b/gnu/packages/patches/x265-detect512-all-arches.patch
@@ -0,0 +1,37 @@
+https://sources.debian.org/data/main/x/x265/2.9-3/debian/patches/0003-detect512-is-needed-on-all-architectures.patch
+
+From: Adam Sampson <unknown@bitbucket>
+Date: Sun, 14 Oct 2018 14:04:18 +0200
+Subject: detect512 is needed on all architectures
+
+---
+ source/common/cpu.cpp | 9 +++++----
+ 1 file changed, 5 insertions(+), 4 deletions(-)
+
+diff --git a/source/common/cpu.cpp b/source/common/cpu.cpp
+index 0681ff5..fa687da 100644
+--- a/source/common/cpu.cpp
++++ b/source/common/cpu.cpp
+@@ -110,6 +110,11 @@ const cpu_name_t cpu_names[] =
+     { "", 0 },
+ };
+ 
++bool detect512()
++{
++    return(enable512);
++}
++
+ #if X265_ARCH_X86
+ 
+ extern "C" {
+@@ -123,10 +128,6 @@ uint64_t PFX(cpu_xgetbv)(int xcr);
+ #pragma warning(disable: 4309) // truncation of constant value
+ #endif
+ 
+-bool detect512()
+-{
+-    return(enable512);
+-}
+ uint32_t cpu_detect(bool benableavx512 )
+ {
+ 
diff --git a/gnu/packages/patches/x265-fix-ppc64le-build.patch b/gnu/packages/patches/x265-fix-ppc64le-build.patch
deleted file mode 100644
index f71d2436ab..0000000000
--- a/gnu/packages/patches/x265-fix-ppc64le-build.patch
+++ /dev/null
@@ -1,25 +0,0 @@
-https://sources.debian.org/data/main/x/x265/2.8-3/debian/patches/0003-Fix-build-error-on-on-ppc64le.patch
-
-This patch also fixes building on armhf-linux and aarch64-linux
-
-From: Jayashree <jayashree.c@multicorewareinc.com>
-Date: Fri, 25 May 2018 10:26:05 +0530
-Subject: Fix build error on on ppc64le
-
----
- source/common/param.cpp | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/source/common/param.cpp b/source/common/param.cpp
-index 31bcbc7..4a6d0c8 100644
---- a/source/common/param.cpp
-+++ b/source/common/param.cpp
-@@ -633,7 +633,7 @@ int x265_param_parse(x265_param* p, const char* name, const char* value)
-         if (bValueWasNull)
-             p->cpuid = atobool(value);
-         else
--            p->cpuid = parseCpuName(value, bError);
-+            p->cpuid = parseCpuName(value, bError, false);
- #endif
-     }
-     OPT("fps")
diff --git a/gnu/packages/patches/zstd-fix-stdin-list-test.patch b/gnu/packages/patches/zstd-fix-stdin-list-test.patch
deleted file mode 100644
index a10355448c..0000000000
--- a/gnu/packages/patches/zstd-fix-stdin-list-test.patch
+++ /dev/null
@@ -1,30 +0,0 @@
-From 8e7bdc18d62632adcee029b2f8f5013d11549dd7 Mon Sep 17 00:00:00 2001
-From: "W. Felix Handte" <w@felixhandte.com>
-Date: Fri, 29 Jun 2018 16:31:22 -0400
-Subject: [PATCH] Fix Tests of `--list` Behavior with `stdin`
-
----
- tests/playTests.sh | 10 ++++++++--
- 1 file changed, 8 insertions(+), 2 deletions(-)
-
-diff --git a/tests/playTests.sh b/tests/playTests.sh
-index 09a7377f2..aa5535d59 100755
---- a/tests/playTests.sh
-+++ b/tests/playTests.sh
-@@ -731,8 +731,14 @@ $ECHO "\n===>  zstd --list/-l error detection tests "
- ! $ZSTD -lv tmp1*
- ! $ZSTD --list -v tmp2 tmp12.zst
- 
--$ECHO "\n===>  zstd --list/-l exits 1 when stdin is piped in"
--! echo "piped STDIN" | $ZSTD --list
-+$ECHO "\n===>  zstd --list/-l errors when presented with stdin / no files"
-+! $ZSTD -l
-+! $ZSTD -l -
-+! $ZSTD -l < tmp1.zst
-+! $ZSTD -l - < tmp1.zst
-+! $ZSTD -l - tmp1.zst
-+! $ZSTD -l - tmp1.zst < tmp1.zst
-+$ZSTD -l tmp1.zst < tmp1.zst # but doesn't error just because stdin is not a tty
- 
- $ECHO "\n===>  zstd --list/-l test with null files "
- ./datagen -g0 > tmp5
diff --git a/gnu/packages/patches/zstd-fix-stdin-list-without-tty.patch b/gnu/packages/patches/zstd-fix-stdin-list-without-tty.patch
deleted file mode 100644
index 47fa3e59a7..0000000000
--- a/gnu/packages/patches/zstd-fix-stdin-list-without-tty.patch
+++ /dev/null
@@ -1,67 +0,0 @@
-From 712a9fd9721c314f4b0238577d803b012845f6d2 Mon Sep 17 00:00:00 2001
-From: "W. Felix Handte" <w@felixhandte.com>
-Date: Fri, 29 Jun 2018 15:33:44 -0400
-Subject: [PATCH] Allow Invoking `zstd --list` When `stdin` is not a `tty`
-
-Also now returns an error when no inputs are given.
-
-New proposed behavior:
-
-```
-felix@odin:~/prog/zstd (list-stdin-check)$ ./zstd -l; echo $?
-No files given
-1
-felix@odin:~/prog/zstd (list-stdin-check)$ ./zstd -l Makefile.zst; echo $?
-Frames  Skips  Compressed  Uncompressed  Ratio  Check  Filename
-     1      0     3.08 KB      10.92 KB  3.544  XXH64  Makefile.zst
-0
-felix@odin:~/prog/zstd (list-stdin-check)$ ./zstd -l <Makefile.zst; echo $?
-zstd: --list does not support reading from standard input
-No files given
-1
-felix@odin:~/prog/zstd (list-stdin-check)$ ./zstd -l Makefile.zst <Makefile.zst; echo $?
-Frames  Skips  Compressed  Uncompressed  Ratio  Check  Filename
-     1      0     3.08 KB      10.92 KB  3.544  XXH64  Makefile.zst
-0
-felix@odin:~/prog/zstd (list-stdin-check)$
-```
----
- programs/fileio.c | 16 ++++++++++------
- 1 file changed, 10 insertions(+), 6 deletions(-)
-
-diff --git a/programs/fileio.c b/programs/fileio.c
-index 0175b3163..b4eed28d1 100644
---- a/programs/fileio.c
-+++ b/programs/fileio.c
-@@ -2017,21 +2017,25 @@ static int FIO_listFile(fileInfo_t* total, const char* inFileName, int displayLe
- }
- 
- int FIO_listMultipleFiles(unsigned numFiles, const char** filenameTable, int displayLevel){
--
--    if (!IS_CONSOLE(stdin)) {
--        DISPLAYOUT("zstd: --list does not support reading from standard input\n");
--        return 1;
-+    unsigned u;
-+    for (u=0; u<numFiles;u++) {
-+        if (!strcmp (filenameTable[u], stdinmark)) {
-+            DISPLAYOUT("zstd: --list does not support reading from standard input\n");
-+            return 1;
-+        }
-     }
- 
-     if (numFiles == 0) {
-+        if (!IS_CONSOLE(stdin)) {
-+            DISPLAYOUT("zstd: --list does not support reading from standard input\n");
-+        }
-         DISPLAYOUT("No files given\n");
--        return 0;
-+        return 1;
-     }
-     if (displayLevel <= 2) {
-         DISPLAYOUT("Frames  Skips  Compressed  Uncompressed  Ratio  Check  Filename\n");
-     }
-     {   int error = 0;
--        unsigned u;
-         fileInfo_t total;
-         memset(&total, 0, sizeof(total));
-         total.usesCheck = 1;
diff --git a/gnu/packages/patchutils.scm b/gnu/packages/patchutils.scm
index a68e369912..688e62cdc8 100644
--- a/gnu/packages/patchutils.scm
+++ b/gnu/packages/patchutils.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2014, 2018 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2015, 2018 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
@@ -31,11 +31,13 @@
   #:use-module (gnu packages bash)
   #:use-module (gnu packages file)
   #:use-module (gnu packages gawk)
+  #:use-module (gnu packages gettext)
   #:use-module (gnu packages less)
   #:use-module (gnu packages mail)
   #:use-module (gnu packages ncurses)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages python)
+  #:use-module (gnu packages version-control)
   #:use-module (gnu packages xml))
 
 (define-public patchutils
@@ -92,7 +94,7 @@ listing the files modified by a patch.")
 (define-public quilt
   (package
     (name "quilt")
-    (version "0.61")
+    (version "0.65")
     (source
      (origin
       (method url-fetch)
@@ -100,12 +102,18 @@ listing the files modified by a patch.")
                           name "-" version ".tar.gz"))
       (sha256
        (base32
-        "1hwz58djkq9cv46sjwxbp2v5m8yjr41kd0nm1zm1xm6418khmv0y"))))
+        "06b816m2gz9jfif7k9v2hrm7fz76zjg5pavf7hd3ifybwn4cgjzn"))
+      (patches (search-patches "quilt-test-fix-regex.patch"
+                               "quilt-compat-getopt-fix-second-separator.patch"
+                               "quilt-compat-getopt-fix-option-with-nondigit-param.patch"))))
     (build-system gnu-build-system)
+    (native-inputs
+     `(("gettext" ,gnu-gettext)))
     (inputs `(("perl" ,perl)
               ("less" ,less)
               ("file" ,file)
-              ("ed" ,ed)))
+              ("ed" ,ed)
+              ("diffstat" ,diffstat)))
     (arguments
      '(#:parallel-tests? #f
        #:phases
@@ -116,8 +124,6 @@ listing the files modified by a patch.")
                  '("test/run"
                    "test/edit.test") 
                (("/bin/sh") (which "sh")))
-             ;; TODO: Run the mail tests once the mail feature can be supported.
-             (delete-file "test/mail.test")
              #t))
          (add-after 'install 'wrap-program
            ;; quilt's configure checks for the absolute path to the utilities it
@@ -128,6 +134,7 @@ listing the files modified by a patch.")
                     (coreutils (assoc-ref inputs "coreutils"))
                     (diffutils (assoc-ref inputs "diffutils"))
                     (findutils (assoc-ref inputs "findutils"))
+                    (diffstat  (assoc-ref inputs "diffstat"))
                     (less      (assoc-ref inputs "less"))
                     (file      (assoc-ref inputs "file"))
                     (ed        (assoc-ref inputs "ed"))
@@ -139,7 +146,8 @@ listing the files modified by a patch.")
                    ,(map (lambda (dir)
                            (string-append dir "/bin"))
                          (list coreutils diffutils findutils
-                               less file ed sed bash grep)))))
+                               less file ed sed bash grep
+                               diffstat)))))
              #t)))))
     (home-page "https://savannah.nongnu.org/projects/quilt/")
     (synopsis "Script for managing patches to software")
diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm
index ac71eaf07b..cadef602e4 100644
--- a/gnu/packages/perl.scm
+++ b/gnu/packages/perl.scm
@@ -43,6 +43,7 @@
   #:use-module (gnu packages)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix utils)
   #:use-module (guix build-system gnu)
   #:use-module (guix build-system perl)
   #:use-module (gnu packages base)
@@ -8998,6 +8999,9 @@ defined by Annex #11 is used to determine breaking positions.")
                (base32
                 "1xnhazbdvpyfpnxd90krzhxkvabf8fa2ji6xzlrf75j6nz8251zs"))))
     (build-system perl-build-system)
+    ;; FIXME: Tests fail on 32-bit architectures:
+    ;; <https://rt.cpan.org/Public/Bug/Display.html?id=127007>.
+    (arguments `(#:tests? ,(target-64bit?)))
     (native-inputs
      `(("perl-test-fatal" ,perl-test-fatal)
        ("perl-test-leaktrace" ,perl-test-leaktrace)
diff --git a/gnu/packages/photo.scm b/gnu/packages/photo.scm
index 7bdf04cb49..db7a9f9d45 100644
--- a/gnu/packages/photo.scm
+++ b/gnu/packages/photo.scm
@@ -131,14 +131,14 @@ data as produced by digital cameras.")
 (define-public libgphoto2
   (package
     (name "libgphoto2")
-    (version "2.5.18")
+    (version "2.5.19")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://sourceforge/gphoto/libgphoto/"
                                   version "/libgphoto2-" version ".tar.bz2"))
               (sha256
                (base32
-                "1v57ayp17j88bj79nl7rf4iyajbxx00kgb4l5k3kbv50gjfvh5sv"))))
+                "0qrcc6kajbfb237paxrl904vvwl7hd8mnqvjw00j6m5qwd93wlk2"))))
     (build-system gnu-build-system)
     (native-inputs `(("pkg-config" ,pkg-config)))
     (inputs
diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm
index b0f0e3c970..d773b2f948 100644
--- a/gnu/packages/python-crypto.scm
+++ b/gnu/packages/python-crypto.scm
@@ -203,14 +203,14 @@ This package provides a Python interface for BLAKE2.")
 (define-public python-paramiko
   (package
     (name "python-paramiko")
-    (version "2.4.1")
+    (version "2.4.2")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "paramiko" version))
        (sha256
         (base32
-         "1wx4s95i2cdh8hhi1c3jb8lzk71jifa3z9wjfsx905y7lrsngqrk"))))
+         "1jqgj2gl1pz7bi2aab1r2xq0ml0gskmm9p235cg9y32nydymm5x8"))))
     (build-system python-build-system)
     (arguments
      `(;; FIXME: Tests require many unpackaged libraries, see dev-requirements.txt.
@@ -220,7 +220,7 @@ This package provides a Python interface for BLAKE2.")
        ("python-pyasn1" ,python-pyasn1)
        ("python-pynacl" ,python-pynacl)
        ("python-cryptography" ,python-cryptography)))
-    (home-page "http://www.paramiko.org/")
+    (home-page "https://www.paramiko.org/")
     (synopsis "SSHv2 protocol library")
     (description "Paramiko is a python implementation of the SSHv2 protocol,
 providing both client and server functionality.  While it leverages a Python C
diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm
index 46ba322ee3..d11a3f8c5c 100644
--- a/gnu/packages/python-web.scm
+++ b/gnu/packages/python-web.scm
@@ -5,7 +5,7 @@
 ;;; Copyright © 2016, 2017 Danny Milosavljevic <dannym+a@scratchpost.org>
 ;;; Copyright © 2013, 2014, 2015, 2016 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2016, 2017 Marius Bakke <mbakke@fastmail.com>
-;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2017 Roel Janssen <roel@gnu.org>
 ;;; Copyright © 2016, 2017 Julien Lepiller <julien@lepiller.eu>
 ;;; Copyright © 2016, 2017 Nils Gillmann <ng0@n0.is>
@@ -26,6 +26,7 @@
 ;;; Copyright © 2018 Tomáš Čech <sleep_walker@gnu.org>
 ;;; Copyright © 2018 Nicolas Goaziou <mail@nicolasgoaziou.fr>
 ;;; Copyright © 2018 Mathieu Othacehe <m.othacehe@gmail.com>
+;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -127,6 +128,85 @@ asynchronous DNS resolutions with a synchronous looking interface by
 using @url{https://github.com/saghul/pycares,pycares}.")
     (license license:expat)))
 
+(define-public python-falcon
+  (package
+    (name "python-falcon")
+    (version "1.4.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "falcon" version))
+       (sha256
+        (base32
+         "1i0vmqsk24z4biirqhpvas9h28wy7nmpy3jvnb6rz2imq04zd09r"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda _
+             (invoke "pytest"))))))
+    (propagated-inputs
+     `(("python-mimeparse" ,python-mimeparse)
+       ("python-six" ,python-six)))
+    (native-inputs
+     `(("python-cython" ,python-cython) ;for faster binaries
+       ("python-pytest" ,python-pytest)
+       ("python-pyyaml" ,python-pyyaml)
+       ("python-requests" ,python-requests)
+       ("python-testtools" ,python-testtools)
+       ("python-jsonschema" ,python-jsonschema)
+       ("python-msgpack" ,python-msgpack)))
+    (home-page "https://falconframework.org")
+    (synopsis
+     "Web framework for building APIs and application backends")
+    (description
+     "Falcon is a web API framework for building microservices, application
+backends and higher-level frameworks.  Among its features are:
+@itemize
+@item Optimized and extensible code base
+@item Routing via URI templates and REST-inspired resource
+classes
+@item Access to headers and bodies through request and response
+classes
+@item Request processing via middleware components and hooks
+@item Idiomatic HTTP error responses
+@item Straightforward exception handling
+@item Unit testing support through WSGI helpers and mocks
+@item Compatible with both CPython and PyPy
+@item Cython support for better performance when used with CPython
+@end itemize")
+    (license license:asl2.0)))
+
+(define-public python2-falcon
+  (package-with-python2 python-falcon))
+
+(define-public python-falcon-cors
+  (package
+    (name "python-falcon-cors")
+    (version "1.1.7")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "falcon-cors" version))
+       (sha256
+        (base32
+         "12pym7hwsbd8b0c1azn95nas8gm3f1qpr6lpyx0958xm65ffr20p"))))
+    (build-system python-build-system)
+    (native-inputs
+     `(("python-falcon" ,python-falcon)))
+    (home-page
+     "https://github.com/lwcolton/falcon-cors")
+    (synopsis "Falcon @dfn{cross-origin resource sharing} (CORS) library")
+    (description "This middleware provides @dfn{cross-origin resource
+sharing} (CORS) support for Falcon.  It allows applying a specially crafted
+CORS object to the incoming requests, enabling the ability to serve resources
+over a different origin than that of the web application.")
+    (license license:asl2.0)))
+
+(define-public python2-falcon-cors
+  (package-with-python2 python-falcon-cors))
+
 (define-public python-furl
   (package
     (name "python-furl")
@@ -1351,14 +1431,14 @@ Amazon Web Services (AWS) API.")
 (define-public python-wsgiproxy2
   (package
     (name "python-wsgiproxy2")
-    (version "0.4.4")
+    (version "0.4.5")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "WSGIProxy2" version ".tar.gz"))
        (sha256
         (base32
-         "16532rjc94h3w74x52jfckf3yzsp8h6z34522jk4xgjy82hpnd7r"))))
+         "19d9dva282vfjs784i0zkxp078lxfz4h3f621z30ij9wbf5rba6a"))))
     (build-system python-build-system)
     (native-inputs
      `(("python-webtest" ,python-webtest)))
@@ -1592,6 +1672,29 @@ library.")
 (define-public python2-responses
   (package-with-python2 python-responses))
 
+(define-public python-grequests
+  (package
+    (name "python-grequests")
+    (version "0.3.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "grequests" version))
+       (sha256
+        (base32
+         "1j9icncllbkv7x5719b20mx670c6q1jrdx1sakskkarvx3pc8h8g"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-gevent" ,python-gevent)
+       ("python-requests" ,python-requests)))
+    (native-inputs
+     `(("python-nose" ,python-nose)))
+    (home-page "https://github.com/kennethreitz/grequests")
+    (synopsis "Python library for asynchronous HTTP requests")
+    (description "GRequests is a Python library that allows you to use
+@code{Requests} with @code{Gevent} to make asynchronous HTTP Requests easily")
+    (license license:bsd-2)))
+
 (define-public python-geventhttpclient
   (package
     (name "python-geventhttpclient")
@@ -2030,21 +2133,36 @@ It comes with safe defaults and easily configurable options.")
 (define-public python-flask-login
   (package
     (name "python-flask-login")
-    (version "0.4.0")
+    (version "0.4.1")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append "https://github.com/maxcountryman/flask-login/archive/"
-                           version ".tar.gz"))
-       (file-name (string-append name "-" version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/maxcountryman/flask-login.git")
+             (commit version)))
+       (file-name (git-file-name name version))
        (sha256
-        (base32
-         "1pdqp7a2gyb7k06xda004x0fi2w66s6kn2i0ndkqndmg12d83f9w"))))
+        (base32 "1rj0qwyxapxnp84fi4lhmvh3d91fdiwz7hibw77x3d5i72knqaa9"))))
     (arguments
-     ;; Tests fail PEP8 compliance. See:
-     ;; https://github.com/maxcountryman/flask-login/issues/340
-     `(#:tests? #f))
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'avoid-yanc
+           ;; Work around '.nosetests-real: error: no such option: --with-yanc'.
+           (lambda _
+             (setenv "NOCOLOR" "set")
+             #t)))))
     (build-system python-build-system)
+    (propagated-inputs
+     `(("python-flask" ,python-flask)))
+    (native-inputs
+     ;; For tests.
+     `(("python-blinker" ,python-blinker)
+       ("python-mock" ,python-mock)
+       ("python-nose" ,python-nose)
+       ("python-pep8" ,python-pep8)
+       ("python-pyflakes" ,python-pyflakes)
+       ("python-semantic-version" ,python-semantic-version)
+       ("python-werkzeug" ,python-werkzeug)))
     (home-page "https://github.com/maxcountryman/flask-login")
     (synopsis "User session management for Flask")
     (description
@@ -2626,3 +2744,79 @@ for URL parsing and changing.")
 
 (define-public python2-google-api-client
   (package-with-python2 python-google-api-client))
+
+(define-public python-hawkauthlib
+  (package
+    (name "python-hawkauthlib")
+    (version "2.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "hawkauthlib" version))
+       (sha256
+        (base32
+         "03ai47s4h8nfnrf25shbfvkm1b9n1ccd4nmmj280sg1fayi69zgg"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-requests" ,python-requests)
+       ("python-webob" ,python-webob)))
+    (home-page "https://github.com/mozilla-services/hawkauthlib")
+    (synopsis "Hawk Access Authentication protocol")
+    (description
+     "This is a low-level Python library for implementing Hawk Access Authentication,
+a simple HTTP request-signing scheme.")
+    (license license:mpl2.0)))
+
+(define-public python-pybrowserid
+  (package
+    (name "python-pybrowserid")
+    (version "0.14.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "PyBrowserID" version))
+       (sha256
+        (base32
+         "1qvi79kfb8x9kxkm5lw2mp42hm82cpps1xknmsb5ghkwx1lpc8kc"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-requests" ,python-requests)))
+    (native-inputs
+     `(("python-mock" ,python-mock)))
+    (home-page "https://github.com/mozilla/PyBrowserID")
+    (synopsis "Python library for the BrowserID protocol")
+    (description
+     "This is a Python client library for the BrowserID protocol that
+underlies Mozilla Persona.")
+    (license license:mpl2.0)))
+
+(define-public python-pyfxa
+  (package
+    (name "python-pyfxa")
+    (version "0.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "PyFxA" version))
+       (sha256
+        (base32
+         "0axl16fyrz2r88gnw4b12mk7dpkqscv8c4wsc1y5hicl7bsbc4fm"))))
+    (build-system python-build-system)
+    (arguments '(#:tests? #f)) ; 17 tests require network access
+    (propagated-inputs
+     `(("python-cryptography" ,python-cryptography)
+       ("python-hawkauthlib" ,python-hawkauthlib)
+       ("python-pybrowserid" ,python-pybrowserid)
+       ("python-requests" ,python-requests)
+       ("python-six" ,python-six)))
+    (native-inputs
+     `(("python-grequests" ,python-grequests)
+       ("python-mock" ,python-mock)
+       ("python-responses" ,python-responses)
+       ("python-unittest2" ,python-unittest2)))
+    (home-page "https://github.com/mozilla/PyFxA")
+    (synopsis "Firefox Accounts client library for Python")
+    (description
+     "This is a Python library for interacting with the Firefox Accounts
+ecosystem.")
+    (license license:mpl2.0)))
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index e4926ce309..2b6a0647fd 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -142,12 +142,14 @@
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system python)
   #:use-module (guix build-system trivial)
-  #:use-module (srfi srfi-1))
+  #:use-module (srfi srfi-1)
+  #:use-module (srfi srfi-26))
 
 (define-public python-2.7
   (package
     (name "python2")
     (version "2.7.15")
+    (replacement python-2/fixed)
     (source
      (origin
       (method url-fetch)
@@ -314,6 +316,16 @@ data types.")
 ;; Current 2.x version.
 (define-public python-2 python-2.7)
 
+(define python-2/fixed
+  (package
+    (inherit python-2)
+    (source (origin
+              (inherit (package-source python-2))
+              (patches (append
+                        (origin-patches (package-source python-2))
+                        (search-patches "python2-CVE-2018-14647.patch"
+                                        "python2-CVE-2018-1000802.patch")))))))
+
 (define-public python2-called-python
   ;; Both 2.x and 3.x used to be called "python".  In commit
   ;; a7714d42de2c3082f3609d1e63c83d703fb39cf9 (March 2018), we renamed the
@@ -327,6 +339,7 @@ data types.")
   (package (inherit python-2)
     (name "python")
     (version "3.7.0")
+    (replacement python-3/fixed)
     (source (origin
               (method url-fetch)
               (uri (string-append "https://www.python.org/ftp/python/"
@@ -398,6 +411,14 @@ data types.")
 ;; Current 3.x version.
 (define-public python-3 python-3.7)
 
+(define python-3/fixed
+  (package
+    (inherit python-3)
+    (source (origin
+              (inherit (package-source python-3))
+              (patches (append (origin-patches (package-source python-3))
+                               (search-patches "python-CVE-2018-14647.patch")))))))
+
 ;; Current major version.
 (define-public python python-3)
 
@@ -405,7 +426,7 @@ data types.")
 ;; Python (Tk -> libxcb -> Python.)
 
 (define-public python2-minimal
-  (package (inherit python-2)
+  (package/inherit python-2
     (name "python2-minimal")
     (outputs '("out"))
 
@@ -416,7 +437,7 @@ data types.")
               ("zlib" ,zlib)))))
 
 (define-public python-minimal
-  (package (inherit python)
+  (package/inherit python
     (name "python-minimal")
     (outputs '("out"))
 
@@ -428,8 +449,7 @@ data types.")
               ("zlib" ,zlib)))))
 
 (define-public python-debug
-  (package
-    (inherit python)
+  (package/inherit python
     (name "python-debug")
     (outputs '("out" "debug"))
     (build-system gnu-build-system)
@@ -448,7 +468,7 @@ for more information.")))
 (define* (wrap-python3 python
                        #:optional
                        (name (string-append (package-name python) "-wrapper")))
-  (package (inherit python)
+  (package/inherit python
     (name name)
     (source #f)
     (build-system trivial-build-system)
@@ -715,8 +735,8 @@ and verifies that it matches the intended target hostname.")
             (setenv "PYTHONPATH"
                     (string-append (getcwd) ":"
                                    (getenv "PYTHONPATH")))
-            (and (zero? (system* "./runexamples.sh"))
-                 (zero? (system* "nosetests" "-v"))))))))
+            (invoke "./runexamples.sh")
+            (invoke "nosetests" "-v"))))))
    (home-page "https://github.com/fhs/python-hdf4")
    (synopsis "Python interface to the NCSA HDF4 library")
    (description
@@ -855,6 +875,34 @@ API for locking files.")
 (define-public python2-lockfile
   (package-with-python2 python-lockfile))
 
+(define-public python-semantic-version
+  (package
+    (name "python-semantic-version")
+    (version "2.6.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "semantic_version" version))
+       (sha256
+        (base32
+         "1h2l9xyg1zzsda6kjcmfcgycbvrafwci283vcr1v5sbk01l2hhra"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:tests? #f))                    ; PyPI tarball lacks tests
+    (home-page "https://github.com/rbarrois/python-semanticversion")
+    (synopsis "Semantic versioning module for Python")
+    (description
+     "The @code{semantic_version} class is a small library for handling
+@uref{https://semver.org/, semantic versioning} (@dfn{SemVer}) in Python.
+
+It can compare versions, generate a new version that represents a bump in one of
+the version levels, and check whether any given string is a proper semantic
+version identifier.")
+    (license license:bsd-3)))
+
+(define-public python2-semantic-version
+  (package-with-python2 python-semantic-version))
+
 (define-public python-setuptools
   (package
     (name "python-setuptools")
@@ -1624,7 +1672,7 @@ software.")
 (define-public python-mimeparse
   (package
     (name "python-mimeparse")
-    (version "0.1.4")
+    (version "1.6.0")
     (source
      (origin
        (method url-fetch)
@@ -1633,10 +1681,14 @@ software.")
              version ".tar.gz"))
        (sha256
         (base32
-         "1hyxg09kaj02ri0rmwjqi86wk4nd1akvv7n0dx77azz76wga4s9w"))))
+         "0y2g6cl660bpz11srgqyvvm8gmywpgyx8g0xfvbiyr0af0yv1r3n"))))
     (build-system python-build-system)
     (arguments
-     '(#:tests? #f)) ; no setup.py test command
+     '(#:phases
+       (modify-phases %standard-phases
+         (replace 'check
+           (lambda _
+             (invoke "./mimeparse_test.py"))))))
     (home-page
      "https://github.com/dbtsai/python-mimeparse")
     (synopsis "Python library for parsing MIME types")
@@ -3263,16 +3315,13 @@ library, libgit2 implements Git plumbing.")
 (define-public python-pyparsing
   (package
     (name "python-pyparsing")
-    (version "2.2.0")
+    (version "2.2.1")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://sourceforge/pyparsing/pyparsing"
-                           "/pyparsing-" version
-                           "/pyparsing-" version ".tar.gz"))
+       (uri (pypi-uri "pyparsing" version))
        (sha256
-        (base32
-         "016b9gh606aa44sq92jslm89bg874ia0yyiyb643fa6dgbsbqch8"))))
+        (base32 "06dgd0iilvf8m0ssmfpcbh8l6jf0zkp8adbb84llksg17crfx4zl"))))
     (build-system python-build-system)
     (outputs '("out" "doc"))
     (arguments
@@ -3295,7 +3344,7 @@ library, libgit2 implements Git plumbing.")
                 (list "docs" "htmldoc" "examples")
                 (list doc html-doc examples))
                #t))))))
-    (home-page "http://pyparsing.wikispaces.com")
+    (home-page "https://github.com/pyparsing/pyparsing")
     (synopsis "Python parsing class library")
     (description
      "The pyparsing module is an alternative approach to creating and
@@ -4239,15 +4288,14 @@ PNG, PostScript, PDF, and SVG file output.")
 (define-public python-decorator
   (package
     (name "python-decorator")
-    (version "4.2.1")
+    (version "4.3.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "decorator" version))
        (sha256
-        (base32 "03iaf116rm3w8b4agb8hzf6z9331mrvi4khfxq35zkx17sgxsikx"))))
+        (base32 "0308djallnh00v112y5b7nadl657ysmkp6vc8xn51d6yzc9zm7n3"))))
     (build-system python-build-system)
-    (arguments '(#:tests? #f)) ; no test target
     (home-page "https://pypi.python.org/pypi/decorator/")
     (synopsis "Python module to simplify usage of decorators")
     (description
@@ -4422,7 +4470,7 @@ displayed.")
              ;; Why does it not work? Delete for now.
              (delete-file "tests/test_socket.py")
              #t))
-         (replace 'check (lambda _ (zero? (system* "nosetests" "-v")))))))
+         (replace 'check (lambda _ (invoke "nosetests" "-v"))))))
     (native-inputs
      `(("python-nose" ,python-nose)
        ("python-pytest" ,python-pytest)
@@ -5099,21 +5147,21 @@ interfaces in an easy and portable manner.")
 (define-public python-networkx
   (package
     (name "python-networkx")
-    (version "2.1")
+    (version "2.2")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "networkx" version ".zip"))
        (sha256
-        (base32 "1ccb8mfz4m821k9y0cigkbq42q2sbb4dj5fbjshp0awp32j2q9v4"))))
+        (base32 "12swxb15299v9vqjsq4z8rgh5sdhvpx497xwnhpnb0gynrx6zra5"))))
     (build-system python-build-system)
-    ;; python-decorator is needed at runtime
+    ;; python-decorator is needed at runtime.
     (propagated-inputs
      `(("python-decorator" ,python-decorator)))
     (native-inputs
      `(("python-nose" ,python-nose)
        ("unzip" ,unzip)))
-    (home-page "http://networkx.github.io/")
+    (home-page "https://networkx.github.io/")
     (synopsis "Python module for creating and manipulating graphs and networks")
     (description
       "NetworkX is a Python package for the creation, manipulation, and study
@@ -7229,9 +7277,7 @@ config files.")
     (version "0.12.0")
     (source (origin
               (method url-fetch)
-              (uri (string-append
-                    "https://pypi.io/packages/source/C/ConfigArgParse/"
-                    "ConfigArgParse-" version ".tar.gz"))
+              (uri (pypi-uri "ConfigArgParse" version))
               (sha256
                (base32
                 "0fgkiqh6r3rbkdq3k8c48m85g52k96686rw3a6jg4lcncrkpvk98"))))
@@ -7450,13 +7496,13 @@ minimal and fast API targeting the following uses:
 (define-public python-icalendar
   (package
     (name "python-icalendar")
-    (version "4.0.1")
+    (version "4.0.3")
     (source (origin
              (method url-fetch)
              (uri (pypi-uri "icalendar" version))
              (sha256
               (base32
-               "139y79y6ijl39m5bj771r43vpah9s4ly7d1k76la6hrx7l144ak8"))))
+               "0mk3dk1dxkcm46jy48v27j2w2349iv4sbimqj1yb5js43mx49hh7"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-dateutil" ,python-dateutil)
@@ -8760,23 +8806,10 @@ LDFLAGS and parse the output to build extensions with setup.py.")
 files.  It contains a drop-in replacement for the I/O interface in the
 standard library's @code{bz2} module, including features from the latest
 development version of CPython that are not available in older releases.")
-    (license license:asl2.0)
-    (properties `((python2-variant . ,(delay python2-bz2file))))))
+    (license license:asl2.0)))
 
 (define-public python2-bz2file
-  (let ((base (package-with-python2
-               (strip-python2-variant python-bz2file))))
-    (package
-      (inherit base)
-      (arguments
-       `(#:python ,python-2
-         #:phases
-         (modify-phases %standard-phases
-           ;; 'python setup.py test' does not work as of 0.98.
-           ;; There is only the one test file, so we run it directly.
-           (replace 'check
-                    (lambda _ (zero? (system* "python"
-                                              "test_bz2file.py"))))))))))
+  (package-with-python2 python-bz2file))
 
 (define-public python-future
   (package
@@ -10098,14 +10131,14 @@ functionality in the command line.")
 (define-public python-glances
   (package
   (name "python-glances")
-  (version "2.7.1")
+  (version "3.0.2")
   (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "Glances" version))
       (sha256
         (base32
-          "11jbq40g8alsbirnd4kiagznqg270247i0m8qhi48ldf2i5xppxg"))))
+          "09fxysfp1n16csqvzvawy74qm6a94nvwjf3vcf5gkqp4i6k4vjjy"))))
   (build-system python-build-system)
   (propagated-inputs
    `(("python-psutil" ,python-psutil)))
@@ -10367,7 +10400,7 @@ theme for the Sphinx documentation system.  It's the default theme of Sphinx.")
              (setenv "CC" "gcc")
              ;; No need to extend PYTHONPATH to find the built package, since
              ;; the Makefile will build anyway
-             (zero? (system* "make" "check")))))))
+             (invoke "make" "check"))))))
   (native-inputs
    `(("procps" ,procps))) ; required for tests
   (home-page
@@ -11325,7 +11358,7 @@ editors.")
 (define-public python2-backports-functools-lru-cache
   (package
     (name "python2-backports-functools-lru-cache")
-    (version "1.3")
+    (version "1.5")
     (source
      (origin
        (method url-fetch)
@@ -11333,7 +11366,7 @@ editors.")
        (uri (pypi-uri "backports.functools_lru_cache" version))
        (sha256
         (base32
-         "158ysf2hb0q4p4695abfiym9x1ywg0dgh8a3apd7gqaaxjy22jj4"))))
+         "06jgv8gib4fhky0p5cmxdghvsgjyzcdgk48k8pxb1ccf11znk64x"))))
     (build-system python-build-system)
     (native-inputs
      `(("python2-setuptools-scm" ,python2-setuptools-scm)))
@@ -12117,14 +12150,14 @@ address is valid and really exists.")
 (define-public python-marshmallow
   (package
     (name "python-marshmallow")
-    (version "3.0.0b3")
+    (version "3.0.0b14")
     (source
      (origin
       (method url-fetch)
       (uri (pypi-uri "marshmallow" version))
       (sha256
        (base32
-        "07mcrij1yvk85lvgx44wwr9pc80xryghvlgayb057g1cazcypysd"))))
+        "1digk3f5cfk7wmlka65mc7bzsd96pbsgcsvp6pimd5b4ff9zb5p3"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-dateutil" ,python-dateutil)
@@ -12391,15 +12424,24 @@ library.")
 (define-public python-rencode
   (package
    (name "python-rencode")
-   (version "1.0.3")
+   (version "1.0.5")
    (source
     (origin
      (method url-fetch)
      (uri (pypi-uri "rencode" version))
      (sha256
       (base32
-       "08if5yax1xn5yfp8p3765ccjmfcv9di7i4m5jckgnwvdsgznwkbj"))))
+       "0mzwdq1is7kyyr32i5k4iz6g5xxdvmiyc132jnc60p9m6lnwjrpv"))))
    (build-system python-build-system)
+   (arguments
+    `(#:phases
+      (modify-phases %standard-phases
+        (add-before 'check 'delete-bogus-test
+          ;; This test requires /home/aresch/Downloads, which is not provided by
+          ;; the build environment.
+          (lambda _
+            (delete-file "rencode/t.py")
+            #t)))))
    (native-inputs `(("pkg-config" ,pkg-config)
                     ("python-cython" ,python-cython)))
    (home-page "https://github.com/aresch/rencode")
@@ -13517,6 +13559,20 @@ file system events on Linux.")
         (base32
          "17h3na0rdh8xq30w4b9pizgkdxmm51896bxw600x84jflg9vaxn4"))))
     (build-system python-build-system)
+    (arguments
+     `(,@(if (any (cute string-prefix? <> (or (%current-system)
+                                              (%current-target-system)))
+                  '("armhf" "i686"))
+        '(#:phases
+          (modify-phases %standard-phases
+          ;; This is required for 32-bit hardware.
+          ;; TODO: Try to remove this when upgrading.
+          (add-after 'unpack 'patch-test
+            (lambda _
+              (substitute* "more_itertools/tests/test_more.py"
+                (("10 \\*\\* 10") "9 ** 9"))
+              #t))))
+        '())))
     (propagated-inputs
      `(("python-six" ,python-six-bootstrap)))
     (home-page "https://github.com/erikrose/more-itertools")
diff --git a/gnu/packages/re2c.scm b/gnu/packages/re2c.scm
index 2a35aa0cdb..e9668cba26 100644
--- a/gnu/packages/re2c.scm
+++ b/gnu/packages/re2c.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2017 Sergei Trofimovich <slyfox@inbox.ru>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -25,7 +26,7 @@
 (define-public re2c
   (package
     (name "re2c")
-    (version "1.0.3")
+    (version "1.1.1")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://github.com/skvadrik/" name
@@ -33,7 +34,7 @@
                                  name "-" version ".tar.gz"))
              (sha256
               (base32
-               "0lnbj15hhgi3r40ipskmg178m18d8n5nph78sci6lprk7zgf0mng"))))
+               "1ksifjn18v6nra935dpqllmvkqgcdsggfjgmj77282x0gqrrfrc5"))))
     (build-system gnu-build-system)
     (home-page "http://re2c.org/")
     (synopsis "Lexer generator for C/C++")
diff --git a/gnu/packages/regex.scm b/gnu/packages/regex.scm
index c9d9e8a359..c05d819d65 100644
--- a/gnu/packages/regex.scm
+++ b/gnu/packages/regex.scm
@@ -29,7 +29,7 @@
 (define-public re2
    (package
      (name "re2")
-     (version "2018-09-01")
+     (version "2018-10-01")
      (home-page "https://github.com/google/re2")
      (source (origin
                (method url-fetch)
@@ -37,7 +37,7 @@
                (file-name (string-append name "-" version ".tar.gz"))
                (sha256
                 (base32
-                 "0hygr88hvy7if1i45m5r6x60zf73439j2fwzw7wwcw9gb01v690l"))))
+                 "10fsxsj3yip34hp2zl5rw8h2x2lgnp83fwrh7m0qfd9m99qrf4x3"))))
      (build-system gnu-build-system)
      (arguments
       `(#:modules ((guix build gnu-build-system)
diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm
index 3673bf2346..7e8c8be290 100644
--- a/gnu/packages/ruby.scm
+++ b/gnu/packages/ruby.scm
@@ -194,25 +194,6 @@ a focus on simplicity and productivity.")
                (("/bin/sh") (which "sh")))
              #t)))))))
 
-(define-public ruby-concurrent
-  (package
-    (name "ruby-concurrent")
-    (version "1.0.5")
-    (source (origin
-              (method url-fetch)
-              (uri (rubygems-uri "concurrent-ruby" version))
-              (sha256
-               (base32
-                "183lszf5gx84kcpb779v6a2y0mx9sssy8dgppng1z9a505nj1qcf"))))
-    (build-system ruby-build-system)
-    (arguments `(#:tests? #f)); No rakefile
-    (home-page "https://github.com/ruby-concurrency/concurrent-ruby")
-    (synopsis "Concurrency tools for Ruby")
-    (description "This gem provides concurrency tools for Ruby.  It provides
-a library of common thread-safe types and data-structures as well as abstractions
-for concurrency and communication between threads.")
-    (license license:expat)))
-
 (define-public ruby-highline
   (package
     (name "ruby-highline")
@@ -1211,12 +1192,15 @@ standard output stream.")
        #:phases
        (modify-phases %standard-phases
          (add-after 'unpack 'fix-tests
-          (lambda _
-            (substitute* "Rakefile"
-              (("system \"shindo") "system \"./bin/shindo")
-              ;; This test doesn't work, so we disable it.
-              (("fail \"The build_error test should fail") "#"))
-            #t)))))
+           (lambda _
+             (substitute* "tests/tests_helper.rb"
+               (("-rubygems") ""))
+             (substitute* "Rakefile"
+               (("system \"shindo") "system \"./bin/shindo")
+               ;; This test doesn't work, so we disable it.
+               (("fail \"The build_error test should fail") "#")
+               ((" -rubygems") ""))
+             #t)))))
     (propagated-inputs
      `(("ruby-formatador" ,ruby-formatador)))
     (synopsis "Simple depth first Ruby testing")
@@ -2911,6 +2895,11 @@ Ruby's large and slower test/unit.")
     (arguments
      `(#:phases
        (modify-phases %standard-phases
+         (add-after 'unpack 'fix-test
+           (lambda -
+             (substitute* "tests/hsl_triple_test.rb"
+               (("0\\\\\\.0%")
+                "0\\.?0?%"))))
          (replace 'build
           (lambda _
             (invoke "gem" "build" "term-ansicolor.gemspec"))))))
@@ -3777,7 +3766,7 @@ A modified copy of yajl is used, and included in the package.")
 (define-public ruby-yard
   (package
     (name "ruby-yard")
-    (version "0.9.6")
+    (version "0.9.16")
     (source
      (origin
        (method url-fetch)
@@ -3787,7 +3776,7 @@ A modified copy of yajl is used, and included in the package.")
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "0rsz4bghgx7fryzyhlz8wlnd2m9xgyvf1xhrq58mnzfrrfm41bdg"))))
+         "0sqpbayy9sb406jh0zqg6qha1xds863qz9531dh6vp58hc00clfq"))))
     (build-system ruby-build-system)
     (arguments
      `(#:phases
@@ -5100,6 +5089,29 @@ are doing, you can fiddle with every last bit of your email directly.")
     (home-page "https://github.com/mikel/mail")
     (license license:expat)))
 
+(define-public ruby-mathn
+  (package
+    (name "ruby-mathn")
+    (version "0.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (rubygems-uri "mathn" version))
+       (sha256
+        (base32
+         "1wn812llln9jzgybz2d7536q39z3gi99i6fi0j1dapcpzvhgrr0p"))))
+    (build-system ruby-build-system)
+    (native-inputs
+     `(("bundler" ,bundler)
+       ("ruby-rake-compiler" ,ruby-rake-compiler)))
+    (synopsis "Extends math operations for increased precision")
+    (description
+     "This gem makes mathematical operations more precise in Ruby and
+integrates other mathematical standard libraries.  Prior to Ruby 2.5,
+@code{mathn} was part of the Ruby standard library.")
+    (home-page "https://github.com/ruby/mathn")
+    (license license:bsd-2)))
+
 (define-public ruby-code-statistics
   (package
     (name "ruby-code-statistics")
@@ -5448,8 +5460,16 @@ strings or files.")
        ("ruby-diffy" ,ruby-diffy)
        ("ruby-terminfo" ,ruby-terminfo)))
     (arguments
-     ;; No Rakefile
-     `(#:tests? #f))
+     `(;; This package contains tests for a sass implementation, and the to
+       ;; avoid any circular dependencies, the tests are not run here
+       #:tests? #f
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-test
+           (lambda _
+             (delete-file "spec/values/colors/alpha_hex-3.5/error")
+             (substitute* "spec/values/colors/alpha_hex-3.5/expected_output.css"
+               (("string") "color")))))))
     (home-page "https://github.com/sass/sass-spec")
     (synopsis "Test suite for Sass")
     (description "Sass Spec is a test suite for Sass.  Test cases are all in
@@ -5459,18 +5479,19 @@ the @file{spec} directory.")
 (define-public ruby-sass
   (package
     (name "ruby-sass")
-    (version "3.5.7")
+    (version "3.6.0")
     (source (origin
               (method url-fetch)
               (uri (rubygems-uri "sass" version))
               (sha256
                (base32
-                "1sy7xsbgpcy90j5ynbq967yplffp74pvph3r8ivn2sv2b44q6i61"))))
+                "18c6prbw9wl8bqhb2435pd9s0lzarl3g7xf8pmyla28zblvwxmyh"))))
     (build-system ruby-build-system)
     (propagated-inputs
      `(("ruby-sass-listen" ,ruby-sass-listen)))
     (native-inputs
-     `(("ruby-sass-spec" ,ruby-sass-spec)))
+     `(("ruby-sass-spec" ,ruby-sass-spec)
+       ("ruby-mathn" ,ruby-mathn)))
     (home-page "http://sass-lang.com/")
     (synopsis "CSS extension language")
     (description "Sass is a CSS extension language.  It extends CSS with
@@ -5652,27 +5673,6 @@ support the tests found in Prawn, a pure Ruby PDF generation library.")
 functionality from Prawn.")
     (license license:gpl3+)))
 
-(define-public ruby-yard
-  (package
-    (name "ruby-yard")
-    (version "0.9.16")
-    (source (origin
-              (method url-fetch)
-              (uri (rubygems-uri "yard" version))
-              (sha256
-               (base32
-                "0lmmr1839qgbb3zxfa7jf5mzy17yjl1yirwlgzdhws4452gqhn67"))))
-    (build-system ruby-build-system)
-    (arguments `(#:test-target "spec"))
-    (home-page "https://yardoc.org/")
-    (synopsis "Ruby documentation tool")
-    (description "YARD is a documentation generation tool for the Ruby
-programming language.  It enables the user to generate consistent, usable
-documentation that can be exported to a number of formats very easily, and
-also supports extending for custom Ruby constructs such as custom class level
-definitions.")
-    (license license:expat)))
-
 (define-public ruby-prawn
   (package
     (name "ruby-prawn")
diff --git a/gnu/packages/rust.scm b/gnu/packages/rust.scm
index 74de6f3ae1..40633854ae 100644
--- a/gnu/packages/rust.scm
+++ b/gnu/packages/rust.scm
@@ -514,6 +514,26 @@ safety and thread safety guarantees.")
        (substitute-keyword-arguments (package-arguments rust-1.19)
          ((#:phases phases)
           `(modify-phases ,phases
+             (add-after 'patch-tests 'patch-cargo-tests
+               (lambda _
+                 (substitute* "src/tools/cargo/tests/build.rs"
+                  (("/usr/bin/env") (which "env"))
+                  ;; Guix llvm is compiled without asmjs-unknown-emscripten.
+                  (("fn wasm32_final_outputs") "#[ignore]\nfn wasm32_final_outputs"))
+                 (substitute* "src/tools/cargo/tests/death.rs"
+                  ;; This is stuck when built in container.
+                  (("fn ctrl_c_kills_everyone") "#[ignore]\nfn ctrl_c_kills_everyone"))
+                 ;; Prints test output in the wrong order when built on
+                 ;; i686-linux.
+                 (substitute* "src/tools/cargo/tests/test.rs"
+                   (("fn cargo_test_env") "#[ignore]\nfn cargo_test_env"))
+                 #t))
+             (add-after 'patch-cargo-tests 'ignore-glibc-2.27-incompatible-test
+               ;; https://github.com/rust-lang/rust/issues/47863
+               (lambda _
+                 (substitute* "src/test/run-pass/out-of-stack.rs"
+                   (("// ignore-android") "// ignore-test\n// ignore-android"))
+                 #t))
              (replace 'configure
                (lambda* (#:key inputs outputs #:allow-other-keys)
                  (let* ((out (assoc-ref outputs "out"))
@@ -542,7 +562,6 @@ submodules = false
 prefix = \"" out "\"
 docdir = \"" doc "/share/doc/rust" "\"
 sysconfdir = \"etc\"
-localstatedir = \"var/lib\"
 [rust]
 default-linker = \"" gcc "/bin/gcc" "\"
 channel = \"stable\"
@@ -579,10 +598,11 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\"
              (delete 'patch-cargo-tomls)
              (add-before 'build 'reset-timestamps-after-changes
                (lambda* _
-                 (define ref (stat "README.md"))
                  (for-each
                   (lambda (filename)
-                    (set-file-time filename ref))
+                    ;; Rust 1.20.0 treats timestamp 0 as "file doesn't exist".
+                    ;; Therefore, use timestamp 1.
+                    (utime filename 1 1 1 1))
                   (find-files "." #:directories? #t))
                  #t))
              (replace 'build
@@ -651,34 +671,6 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\"
                ;; XXX: Revisit this when we use gcc 6.
                (substitute* "src/binaryen/CMakeLists.txt"
                  (("ADD_COMPILE_FLAG\\(\\\"-march=native\\\"\\)") ""))
-               #t))
-           (add-after 'patch-tests 'patch-cargo-tests
-             (lambda _
-               (substitute* "src/tools/cargo/tests/build.rs"
-                (("/usr/bin/env") (which "env"))
-                ;; Guix llvm is compiled without asmjs-unknown-emscripten.
-                (("fn wasm32_final_outputs") "#[ignore]\nfn wasm32_final_outputs"))
-               (substitute* "src/tools/cargo/tests/death.rs"
-                ;; This is stuck when built in container.
-                (("fn ctrl_c_kills_everyone") "#[ignore]\nfn ctrl_c_kills_everyone"))
-               ;; Prints test output in the wrong order when built on
-               ;; i686-linux.
-               (substitute* "src/tools/cargo/tests/test.rs"
-                 (("fn cargo_test_env") "#[ignore]\nfn cargo_test_env"))
-               #t))
-           (add-after 'patch-cargo-tests 'ignore-glibc-2.27-incompatible-test
-             ;; https://github.com/rust-lang/rust/issues/47863
-             (lambda _
-               (substitute* "src/test/run-pass/out-of-stack.rs"
-                 (("// ignore-android") "// ignore-test\n// ignore-android"))))
-           (add-after 'ignore-glibc-2.27-incompatible-test 'fix-mtime-bug
-             (lambda* _
-               (substitute* "src/build_helper/lib.rs"
-                 ;; Bug in Rust code.
-                 ;; Current implementation assume that if dst not exist then it's mtime
-                 ;; is 0, but in same time "src" have 0 mtime in guix build!
-                 (("let threshold = mtime\\(dst\\);")
-                  "if !dst.exists() {\nreturn false\n}\n let threshold = mtime(dst);"))
                #t))))))))
 
 (define-public rust-1.24
@@ -698,8 +690,7 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\"
                    ;; This test is known to fail on aarch64 and powerpc64le:
                    ;; https://github.com/rust-lang/rust/issues/45410
                    (("fn test_loading_cosine") "#[ignore]\nfn test_loading_cosine"))
-                 #t))
-             (delete 'fix-mtime-bug))))))))
+                 #t)))))))))
 
 (define-public rust-1.25
   (let ((base-rust
diff --git a/gnu/packages/sdl.scm b/gnu/packages/sdl.scm
index 55ce45ce78..caa1d6d1c1 100644
--- a/gnu/packages/sdl.scm
+++ b/gnu/packages/sdl.scm
@@ -33,6 +33,7 @@
   #:use-module (guix download)
   #:use-module (guix utils)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system haskell)
   #:use-module (guix build-system trivial)
   #:use-module (gnu packages audio)
   #:use-module (gnu packages fcitx)
@@ -40,6 +41,7 @@
   #:use-module (gnu packages freedesktop)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages guile)
+  #:use-module (gnu packages haskell)
   #:use-module (gnu packages ibus)
   #:use-module (gnu packages image)
   #:use-module (gnu packages linux)
@@ -520,3 +522,93 @@ sound and device input (keyboards, joysticks, mice, etc.).")
 The bindings are written in pure Scheme using Guile's foreign function
 interface.")
     (license lgpl3+)))
+
+(define-public ghc-sdl2
+  (package
+    (name "ghc-sdl2")
+    (version "2.4.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/"
+                           "sdl2/sdl2-" version ".tar.gz"))
+       (sha256
+        (base32
+         "0p4b12fmxps0sbnkqdfy0qw19s355yrkw7fgw6xz53wzq706k991"))))
+    (build-system haskell-build-system)
+    (arguments '(#:tests? #f)) ; tests require graphical environment
+    (inputs
+     `(("ghc-exceptions" ,ghc-exceptions)
+       ("ghc-linear" ,ghc-linear)
+       ("ghc-statevar" ,ghc-statevar)
+       ("ghc-text" ,ghc-text)
+       ("ghc-vector" ,ghc-vector)
+       ("sdl2" ,sdl2)))
+    (native-inputs
+     `(("ghc-weigh" ,ghc-weigh)
+       ("pkg-config" ,pkg-config)))
+    (home-page "http://hackage.haskell.org/package/sdl2")
+    (synopsis "High- and low-level bindings to the SDL library")
+    (description
+     "This package contains bindings to the SDL 2 library, in both high- and
+low-level forms.  The @code{SDL} namespace contains high-level bindings, where
+enumerations are split into sum types, and we perform automatic
+error-checking.  The @code{SDL.Raw} namespace contains an almost 1-1
+translation of the C API into Haskell FFI calls.  As such, this does not
+contain sum types nor error checking.  Thus this namespace is suitable for
+building your own abstraction over SDL, but is not recommended for day-to-day
+programming.")
+    (license bsd-3)))
+
+(define-public ghc-sdl2-mixer
+  (package
+    (name "ghc-sdl2-mixer")
+    (version "1.1.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/sdl2-mixer/"
+                           "sdl2-mixer-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1k8avyccq5l9z7bwxigim312yaancxl1sr3q6a96bcm7pnhiak0g"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-data-default-class" ,ghc-data-default-class)
+       ("ghc-lifted-base" ,ghc-lifted-base)
+       ("ghc-monad-control" ,ghc-monad-control)
+       ("ghc-sdl2" ,ghc-sdl2)
+       ("ghc-vector" ,ghc-vector)
+       ("sdl2-mixer" ,sdl2-mixer)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (home-page "http://hackage.haskell.org/package/sdl2-mixer")
+    (synopsis "Bindings to SDL2 mixer")
+    (description "This package provides Haskell bindings to
+@code{SDL2_mixer}.")
+    (license bsd-3)))
+
+(define-public ghc-sdl2-image
+  (package
+    (name "ghc-sdl2-image")
+    (version "2.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "https://hackage.haskell.org/package/sdl2-image/"
+                           "sdl2-image-" version ".tar.gz"))
+       (sha256
+        (base32
+         "1pr6dkg73cy9z0w54lrkj9c5bhxj56nl92lxikjy8kz6nyr455rr"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-sdl2" ,ghc-sdl2)
+       ("ghc-text" ,ghc-text)
+       ("sdl2-image" ,sdl2-image)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (home-page "http://hackage.haskell.org/package/sdl2-image")
+    (synopsis "Bindings to SDL2_image")
+    (description "This package provides Haskell bindings to
+@code{SDL2_image}.")
+    (license expat)))
diff --git a/gnu/packages/skarnet.scm b/gnu/packages/skarnet.scm
index 9a6733d8bc..6546d40597 100644
--- a/gnu/packages/skarnet.scm
+++ b/gnu/packages/skarnet.scm
@@ -105,7 +105,7 @@ complexity.")))
 (define-public s6
   (package
    (name "s6")
-   (version "2.7.2.0")
+   (version "2.7.2.1")
    (source
     (origin
      (method url-fetch)
@@ -113,7 +113,7 @@ complexity.")))
                          version ".tar.gz"))
      (sha256
       (base32
-       "02canrzmhr66gi16ldyylk378jlmyfl73vn72ayr12h2wyxgqm5g"))))
+       "0vyl4wr2l4mp9ams0dyg224qxhl8ksxsv2shs6606lhhp9g1rb6b"))))
    (build-system gnu-build-system)
    (inputs `(("skalibs" ,skalibs)
              ("execline" ,execline)))
diff --git a/gnu/packages/ssh.scm b/gnu/packages/ssh.scm
index 089e4f63f9..816324b279 100644
--- a/gnu/packages/ssh.scm
+++ b/gnu/packages/ssh.scm
@@ -65,40 +65,36 @@
   #:use-module (srfi srfi-1))
 
 (define-public libssh
-  ;; This commit from the 'v0-7' branch contains 7 memory-management-related
-  ;; bug fixes that we'd rather have.
-  (let ((commit "239d0f75b5f909174c2ef7fb08d23bcfa6b20ba0")
-        (revision "0"))
-    (package
-      (name "libssh")
-      (version (git-version "0.7.5" revision commit))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "https://git.libssh.org/projects/libssh.git")
-                      (commit commit)))
-                (sha256
-                 (base32
-                  "01w72w1jsgs9ilj3n1gp6qkmdxr9n74i5h2nipi3x1vzm7bv8na1"))
-                (patches (search-patches "libssh-hostname-parser-bug.patch"))
-                (file-name (git-file-name name version))))
-      (build-system cmake-build-system)
-      (outputs '("out" "debug"))
-      (arguments
-       '(#:configure-flags '("-DWITH_GCRYPT=ON")
-
-         ;; TODO: Add 'CMockery' and '-DWITH_TESTING=ON' for the test suite.
-         #:tests? #f))
-      (inputs `(("zlib" ,zlib)
-                ("libgcrypt" ,libgcrypt)))
-      (synopsis "SSH client library")
-      (description
-       "libssh is a C library implementing the SSHv2 and SSHv1 protocol for
-client and server implementations.  With libssh, you can remotely execute
-programs, transfer files, and use a secure and transparent tunnel for your
-remote applications.")
-      (home-page "https://www.libssh.org")
-      (license license:lgpl2.1+))))
+  (package
+    (name "libssh")
+    (version "0.7.6")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://git.libssh.org/projects/libssh.git")
+                    (commit (string-append "libssh-" version))))
+              (patches (search-patches "libssh-hostname-parser-bug.patch"))
+              (sha256
+               (base32
+                "0slwqa36mhyb6brdv2jvb9fxp7rvsv3ziv67kaxx615jxn52l5pa"))
+              (file-name (git-file-name name version))))
+    (build-system cmake-build-system)
+    (outputs '("out" "debug"))
+    (arguments
+     '(#:configure-flags '("-DWITH_GCRYPT=ON")
+
+       ;; TODO: Add 'CMockery' and '-DWITH_TESTING=ON' for the test suite.
+       #:tests? #f))
+    (inputs `(("zlib" ,zlib)
+              ("libgcrypt" ,libgcrypt)))
+    (synopsis "SSH client library")
+    (description
+     "libssh is a C library implementing the SSHv2 and SSHv1 protocol for client
+and server implementations.  With libssh, you can remotely execute programs,
+transfer files, and use a secure and transparent tunnel for your remote
+applications.")
+    (home-page "https://www.libssh.org")
+    (license license:lgpl2.1+)))
 
 (define-public libssh2
   (package
diff --git a/gnu/packages/swig.scm b/gnu/packages/swig.scm
index b931db412b..61f6a8ccfe 100644
--- a/gnu/packages/swig.scm
+++ b/gnu/packages/swig.scm
@@ -22,6 +22,7 @@
   #:use-module (guix download)
   #:use-module (guix licenses)
   #:use-module (guix build-system gnu)
+  #:use-module (gnu packages)
   #:use-module (gnu packages pcre)
   #:use-module (gnu packages guile)
   #:use-module (gnu packages boost)
@@ -37,6 +38,7 @@
              (uri (string-append "mirror://sourceforge/" name "/" name "/"
                                  name "-" version "/"
                                  name "-" version ".tar.gz"))
+             (patches (search-patches "swig-guile-gc.patch"))
              (sha256
               (base32
                "0kf99ygrjs5616gsqhz1l7bib3a12izmxi7g48bwblbymr3z9ybw"))))
diff --git a/gnu/packages/syncthing.scm b/gnu/packages/syncthing.scm
index 29caaaf02e..2e936eef7d 100644
--- a/gnu/packages/syncthing.scm
+++ b/gnu/packages/syncthing.scm
@@ -30,7 +30,7 @@
 (define-public syncthing
   (package
     (name "syncthing")
-    (version "0.14.50")
+    (version "0.14.51")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/syncthing/syncthing"
@@ -38,7 +38,7 @@
                                   "/syncthing-source-v" version ".tar.gz"))
               (sha256
                (base32
-                "0yjj6zzivzw289bhwqjb4xcv8p39n5mcwwr5w6xf5ykzljc5pk55"))
+                "17phn8l2afhgzh0q9ambi28awj2m905sr1bicq2wc7ghypk5vgqh"))
               (modules '((guix build utils)))
               ;; Delete bundled ("vendored") free software source code.
               (snippet '(begin
@@ -59,7 +59,7 @@
          (add-before 'build 'increase-test-timeout
            (lambda _
              (substitute* "src/github.com/syncthing/syncthing/build.go"
-               (("60s") "999s"))
+               (("120s") "999s"))
              #t))
 
          (replace 'build
@@ -138,6 +138,7 @@
        ("go-github-com-pkg-errors" ,go-github-com-pkg-errors)
        ("go-github-com-rcrowley-go-metrics" ,go-github-com-rcrowley-go-metrics)
        ("go-github-com-sasha-s-go-deadlock" ,go-github-com-sasha-s-go-deadlock)
+       ("go-github-com-syncthing-notify" ,go-github-com-syncthing-notify)
        ("go-github-com-syndtr-goleveldb" ,go-github-com-syndtr-goleveldb)
        ("go-github-com-thejerf-suture" ,go-github-com-thejerf-suture)
        ("go-github-com-vitrun-qart" ,(go-github-com-vitrun-qart-union))
@@ -145,7 +146,7 @@
        ("go-golang-org-x-net-union" ,(go-golang-org-x-net-union))
        ("go-golang-org-x-text" ,(go-golang-org-x-text-union))
        ("go-golang-org-x-time-rate" ,go-golang-org-x-time-rate)
-       ("go-github-com-syncthing-notify" ,go-github-com-syncthing-notify)
+       ("go-gopkg.in-ldap.v2" ,go-gopkg.in-ldap.v2)
        ;; For tests
        ("go-github-com-d4l3k-messagediff" ,go-github-com-d4l3k-messagediff)))
     (synopsis "Decentralized continuous file system synchronization")
@@ -678,11 +679,11 @@ database in Go.")
       (license bsd-2))))
 
 (define-public go-github-com-thejerf-suture
-  (let ((commit "3f1fb62fe0a3cc6429122d7dc45588a8b59c5bb6")
+  (let ((commit "bf6ee6a0b047ebbe9ae07d847f750dd18c6a9276")
         (revision "0"))
     (package
       (name "go-github-com-thejerf-suture")
-      (version (git-version "2.0.3" revision commit))
+      (version (git-version "3.0.0" revision commit))
       (source (origin
                 (method git-fetch)
                 (uri (git-reference
@@ -691,7 +692,7 @@ database in Go.")
                 (file-name (git-file-name name version))
                 (sha256
                  (base32
-                  "0mp7gz6bp6xhggkgmbl33vpmrq3a6n2dkgcxbkb7csnpv4r4d59k"))))
+                  "0rzx9k408vaglwnnpgpcs6y7ff7p65915nbg33rvbaz13hxwkz3y"))))
       (build-system go-build-system)
       (arguments
        `(#:import-path "github.com/thejerf/suture"))
@@ -1366,3 +1367,50 @@ Prometheus HTTP API.")
     (description "This is a union of Go Prometheus libraries")
     (home-page (package-home-page go-github-com-client-golang-prometheus))
     (license (package-license go-github-com-client-golang-prometheus))))
+
+(define-public go-gopkg.in-asn1-ber.v1
+  (package
+    (name "go-gopkg.in-asn1-ber.v1")
+    (version "1.2")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://gopkg.in/asn1-ber.v1")
+                     (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1y8bvzbxpw0lfnn7pbcdwzqj4l90qj6xf88dvv9pxd9yl5g6cskx"))))
+    (build-system go-build-system)
+    (arguments
+     '(#:import-path "gopkg.in/asn1-ber.v1"))
+    (synopsis "ASN.1 BER encoding and decoding in Go")
+    (description "This package provides ASN.1 BER encoding and decoding in the
+Go language.")
+    (home-page "https://gopkg.in/asn1-ber.v1")
+    (license expat)))
+
+(define-public go-gopkg.in-ldap.v2
+  (package
+    (name "go-gopkg.in-ldap.v2")
+    (version "2.5.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                     (url "https://gopkg.in/ldap.v2")
+                     (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1wf81wy04nhkqs0dg5zkivr4sh37r83bxrfwjz9vr4jq6vmljr3h"))))
+    (build-system go-build-system)
+    (arguments
+     '(#:import-path "gopkg.in/ldap.v2"
+       #:tests? #f)) ; the test suite requires network access
+    (propagated-inputs
+     `(("go-gopkg.in-asn1-ber.v1" ,go-gopkg.in-asn1-ber.v1)))
+    (synopsis "LDAP v3 functionality for Go")
+    (description "This package provides basic LDAP v3 functionality in the Go
+language.")
+    (home-page "https://gopkg.in/ldap.v2")
+    (license expat)))
diff --git a/gnu/packages/syndication.scm b/gnu/packages/syndication.scm
index f37c0eaac5..a7c685fdc1 100644
--- a/gnu/packages/syndication.scm
+++ b/gnu/packages/syndication.scm
@@ -1,6 +1,9 @@
+;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
+;;; This file is part of GNU Guix.
+;;;
 ;;; GNU Guix is free software; you can redistribute it and/or modify it
 ;;; under the terms of the GNU General Public License as published by
 ;;; the Free Software Foundation; either version 3 of the License, or (at
@@ -32,7 +35,7 @@
 (define-public newsboat
   (package
     (name "newsboat")
-    (version "2.12")
+    (version "2.13")
     (source
      (origin
        (method url-fetch)
@@ -40,7 +43,7 @@
                            "/newsboat-" version ".tar.xz"))
        (sha256
         (base32
-         "1x23zlgljaqf46v7sp8wnkyf6wighvirvn48ankpa34yr8mvrgcv"))))
+         "0pik1d98ydzqi6055vdbkjg5krwifbk2hy2f5jp5p1wcy2s16dn7"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("gettext" ,gettext-minimal)
diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm
index c62512b8d0..294d334423 100644
--- a/gnu/packages/tex.scm
+++ b/gnu/packages/tex.scm
@@ -194,6 +194,14 @@
             (copy-file "texk/web2c/pdftexdir/pdftosrc-newpoppler.cc"
                        "texk/web2c/pdftexdir/pdftosrc.cc")
             #t))
+        (add-after 'unpack 'disable-failing-test
+          (lambda _
+            ;; FIXME: This test fails on 32-bit architectures since Glibc 2.28:
+            ;; <https://bugzilla.redhat.com/show_bug.cgi?id=1631847>.
+            (substitute* "texk/web2c/omegafonts/check.test"
+              (("^\\./omfonts -ofm2opl \\$srcdir/tests/check tests/xcheck || exit 1")
+               "./omfonts -ofm2opl $srcdir/tests/check tests/xcheck || exit 77"))
+            #t))
         (add-after 'install 'postint
           (lambda* (#:key inputs outputs #:allow-other-keys #:rest args)
             (let* ((out (assoc-ref outputs "out"))
@@ -4498,3 +4506,248 @@ including:
 
 It also ensures compatibility with the @code{media9} and @code{animate} packages.")
     (license license:lppl)))
+
+(define-public texlive-latex-ms
+  (package
+    (name "texlive-latex-ms")
+    (version (number->string %texlive-revision))
+    (source (origin
+              (method svn-fetch)
+              (uri (texlive-ref "latex" "ms"))
+              (file-name (string-append name "-" version "-checkout"))
+              (sha256
+               (base32
+                "0m4wx3yjb5al1qsv995z8fii8xxy96mcfihbnlx43lpgayiwz35s"))))
+    (build-system texlive-build-system)
+    (arguments
+     '(#:tex-directory "latex/ms"
+       #:tex-format "latex"))
+    (home-page "https://ctan.org/pkg/ms")
+    (synopsis "Various LATEX packages by Martin Schröder")
+    (description
+     "A bundle of LATEX packages by Martin Schröder; the collection comprises:
+
+@itemize
+@item @command{count1to}, make use of fixed TEX counters;
+@item @command{everysel}, set commands to execute every time a font is selected;
+@item @command{everyshi}, set commands to execute whenever a page is shipped out;
+@item @command{multitoc}, typeset the table of contents in multiple columns;
+@item @command{prelim2e}, mark typeset pages as preliminary; and
+@item @command{ragged2e}, typeset ragged text and allow hyphenation.
+@end itemize\n")
+    (license license:lppl1.3c+)))
+
+(define-public texlive-latex-needspace
+  (package
+    (name "texlive-latex-needspace")
+    (version (number->string %texlive-revision))
+    (source (origin
+              (method svn-fetch)
+              (uri (texlive-ref "latex" "needspace"))
+              (file-name (string-append name "-" version "-checkout"))
+              (sha256
+               (base32
+                "0kw80f5jh4gdpa2ka815abza3gr5z8b929w0745vrlc59pl0017y"))))
+    (build-system texlive-build-system)
+    (arguments
+     '(#:tex-directory "latex/needspace"
+       #:tex-format "latex"))
+    (inputs
+     `(("texlive-latex-filecontents" ,texlive-latex-filecontents)))
+    (home-page "https://www.ctan.org/pkg/needspace")
+    (synopsis "Insert pagebreak if not enough space")
+    (description
+     "Provides commands to disable pagebreaking within a given vertical
+space.  If there is not enough space between the command and the bottom of the
+page, a new page will be started.")
+    (license license:lppl)))
+
+(define-public texlive-latex-eukdate
+  (package
+    (name "texlive-latex-eukdate")
+    (version (number->string %texlive-revision))
+    (source
+     (origin
+       (method svn-fetch)
+       (uri (svn-reference
+             (url (string-append "svn://www.tug.org/texlive/tags/"
+                                 %texlive-tag "/Master/texmf-dist/"
+                                 "/tex/latex/eukdate"))
+             (revision %texlive-revision)))
+       (file-name (string-append name "-" version "-checkout"))
+       (sha256
+        (base32
+         "18xan116l8w47v560bkw6nbhkrml7g04xrlzk3jrpc7qsyf3n5fz"))))
+    (build-system trivial-build-system)
+    (arguments
+     `(#:modules ((guix build utils))
+       #:builder
+       (begin
+         (use-modules (guix build utils))
+         (let ((target (string-append (assoc-ref %outputs "out")
+                                      "/share/texmf-dist/tex/latex/eukdate")))
+           (mkdir-p target)
+           (copy-recursively (assoc-ref %build-inputs "source") target)
+           #t))))
+    (home-page "https://www.ctan.org/pkg/eukdate")
+    (synopsis "UK format dates, with weekday")
+    (description
+     "The package is used to change the format of @code{\\today}’s date,
+including the weekday, e.g., \"Saturday, 26 June 2008\", the 'UK format', which
+is preferred in many parts of the world, as distinct from that which is used in
+@code{\\maketitle} of the article class, \"June 26, 2008\", the 'US format'.")
+    (license license:lppl)))
+
+(define-public texlive-generic-ulem
+  (package
+    (name "texlive-generic-ulem")
+    (version (number->string %texlive-revision))
+    (source
+     (origin
+       (method svn-fetch)
+       (uri (svn-reference
+             (url (string-append "svn://www.tug.org/texlive/tags/"
+                                 %texlive-tag "/Master/texmf-dist/"
+                                 "/tex/generic/ulem"))
+             (revision %texlive-revision)))
+       (file-name (string-append name "-" version "-checkout"))
+       (sha256
+        (base32
+         "1rzdniqq9zk39w8ch8ylx3ywh2mj87s4ivchrsk2b8nx06jyn797"))))
+    (build-system trivial-build-system)
+    (arguments
+     `(#:modules ((guix build utils))
+       #:builder
+       (begin
+         (use-modules (guix build utils))
+         (let ((target (string-append (assoc-ref %outputs "out")
+                                      "/share/texmf-dist/tex/generic/ulem")))
+           (mkdir-p target)
+           (copy-recursively (assoc-ref %build-inputs "source") target)
+           #t))))
+    (home-page "https://www.ctan.org/pkg/ulem")
+    (synopsis "Underline text in TeX")
+    (description
+     "The package provides an @code{\\ul} (underline) command which will break
+over line ends; this technique may be used to replace @code{\\em} (both in that
+form and as the @code{\\emph} command), so as to make output look as if it comes
+from a typewriter.  The package also offers double and wavy underlining, and
+striking out (line through words) and crossing out (/// over words).")
+    (license license:lppl1.3c+)))
+
+(define-public texlive-latex-pgf
+  (package
+    (name "texlive-latex-pgf")
+    (version (number->string %texlive-revision))
+    (source
+     (origin
+       (method svn-fetch)
+       (uri (svn-reference
+             (url (string-append "svn://www.tug.org/texlive/tags/"
+                                 %texlive-tag "/Master/texmf-dist/"
+                                 "/tex/latex/pgf"))
+             (revision %texlive-revision)))
+       (file-name (string-append name "-" version "-checkout"))
+       (sha256
+        (base32
+         "1dq8p10pz8wn0vx412m7d7d5gj1syxly3yqdqvf7lv2xl8zndn5h"))))
+    (build-system trivial-build-system)
+    (native-inputs
+     `(("texlive-latex-pgf-generic"
+        ,(origin
+           (method svn-fetch)
+           (uri (svn-reference
+             (url (string-append "svn://www.tug.org/texlive/tags/"
+                                 %texlive-tag "/Master/texmf-dist/"
+                                 "/tex/generic/pgf"))
+             (revision %texlive-revision)))
+           (file-name (string-append "texlive-latex-pgf-generic" version "-checkout"))
+           (sha256
+            (base32
+             "0xkxw26sjzr5npjpzpr28yygwdbhzpdd0hsk80gjpidhcxmz393i"))))))
+    (arguments
+     `(#:modules ((guix build utils))
+       #:builder
+       (begin
+         (use-modules (guix build utils))
+         (let ((target-generic (string-append (assoc-ref %outputs "out")
+                                              "/share/texmf-dist/tex/generic/pgf"))
+               (target-latex (string-append (assoc-ref %outputs "out")
+                                            "/share/texmf-dist/tex/latex/pgf")))
+           (mkdir-p target-generic)
+           (mkdir-p target-latex)
+           (copy-recursively (assoc-ref %build-inputs "texlive-latex-pgf-generic") target-generic)
+           (copy-recursively (assoc-ref %build-inputs "source") target-latex)
+           #t))))
+    (home-page "https://www.ctan.org/pkg/tikz")
+    (synopsis "Create PostScript and PDF graphics in TeX")
+    (description
+     "PGF is a macro package for creating graphics.  It is platform- and
+format-independent and works together with the most important TeX backend
+drivers, including pdfTeX and dvips.  It comes with a user-friendly syntax layer
+called TikZ.
+
+Its usage is similar to pstricks and the standard picture environment.  PGF
+works with plain (pdf-)TeX, (pdf-)LaTeX, and ConTeXt.  Unlike pstricks, it can
+produce either PostScript or PDF output.")
+    (license license:lppl1.3c+)))
+
+(define-public texlive-latex-koma-script
+  (package
+    (name "texlive-latex-koma-script")
+    (version (number->string %texlive-revision))
+    (source (origin
+              (method svn-fetch)
+              (uri (svn-reference
+                    (url (string-append "svn://www.tug.org/texlive/tags/"
+                                        %texlive-tag "/Master/texmf-dist/"
+                                        "/tex/latex/koma-script"))
+                    (revision %texlive-revision)))
+              (file-name (string-append name "-" version "-checkout"))
+              (sha256
+               (base32
+                "1g8qg796hc6s092islnybaxs115ldsqwp2vxkk3gpy6vh7wc9r50"))))
+    (build-system trivial-build-system)
+    (arguments
+     `(#:modules ((guix build utils)
+                  (ice-9 match))
+       #:builder
+       (begin
+         (use-modules (guix build utils)
+                      (ice-9 match))
+         (let ((root (string-append (assoc-ref %outputs "out")
+                                    "/share/texmf-dist/"))
+               (pkgs '(("source" . "tex/latex/koma-script"))))
+           (for-each (match-lambda
+                       ((pkg . dir)
+                        (let ((target (string-append root dir)))
+                          (mkdir-p target)
+                          (copy-recursively (assoc-ref %build-inputs pkg)
+                                            target))))
+                     pkgs)
+           #t))))
+    (home-page "https://www.ctan.org/pkg/koma-script")
+    (synopsis "Bundle of versatile classes and packages")
+    (description
+     "The KOMA-Script bundle provides replacements for the article, report, and
+book classes with emphasis on typography and versatility.  There is also a
+letter class.
+
+The bundle also offers:
+
+@itemize
+@item a package for calculating type areas in the way laid down by the
+typographer Jan Tschichold,
+@item packages for easily changing and defining page styles,
+@item a package scrdate for getting not only the current date but also the name
+of the day, and
+@item a package scrtime for getting the current time.
+@end itemize
+
+All these packages may be used not only with KOMA-Script classes but also with
+the standard classes.
+
+Since every package has its own version number, the version number quoted only
+refers to the version of scrbook, scrreprt, scrartcl, scrlttr2 and
+typearea (which are the main parts of the bundle).")
+    (license license:lppl1.3+)))
diff --git a/gnu/packages/textutils.scm b/gnu/packages/textutils.scm
index ce34423713..8780bb2829 100644
--- a/gnu/packages/textutils.scm
+++ b/gnu/packages/textutils.scm
@@ -84,7 +84,7 @@ to DOS format and vice versa.")
 (define-public recode
   (package
     (name "recode")
-    (version "3.7")
+    (version "3.7.1")
     (source
      (origin
        (method url-fetch)
@@ -92,7 +92,7 @@ to DOS format and vice versa.")
                            "download/v" version "/" name "-" version ".tar.gz"))
        (sha256
         (base32
-         "0r4yhf7i7zp2nl2apyzz7r3i2in12n385hmr8zcfr18ly0ly530q"))
+         "0215hfj0rhlh0grg91qfx75pp6z09bpv8211qdxqihniw7y9a4fs"))
        (modules '((guix build utils)))
        (snippet '(begin
                    (delete-file "tests/Recode.c")
@@ -735,7 +735,8 @@ measuring and checking the width of strings, with support east asian text.")
                                  unzip
                                  "/bin/unzip',")))
                ;; Makefile is wrong.
-               (chmod config #o644)))))))
+               (chmod config #o644)
+               #t))))))
     (synopsis "Recover text from @file{.docx} files, with good formatting")
     (description
      "@command{docx2txt} is a Perl based command line utility to convert
diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm
index 4d6e88bf3d..d9fc601066 100644
--- a/gnu/packages/tls.scm
+++ b/gnu/packages/tls.scm
@@ -665,7 +665,7 @@ servers or clients for more complicated applications.")
 (define-public perl-crypt-openssl-rsa
  (package
   (name "perl-crypt-openssl-rsa")
-  (version "0.30")
+  (version "0.31")
   (source
     (origin
       (method url-fetch)
@@ -675,7 +675,7 @@ servers or clients for more complicated applications.")
              ".tar.gz"))
       (sha256
         (base32
-          "1b19kaaw4wda8dy6kjiwqa2prpbs2dqcyjyj9zdh5wbs74qkbq93"))))
+          "0djl5i6kibl7862b6ih29q8dhg5zpwzq77q9j8hp6xngshx40ws1"))))
   (build-system perl-build-system)
   (native-inputs
    `(("perl-crypt-openssl-guess" ,perl-crypt-openssl-guess)))
@@ -826,7 +826,7 @@ then ported to the GNU / Linux environment.")
 (define-public mbedtls-apache
   (package
     (name "mbedtls-apache")
-    (version "2.7.6")
+    (version "2.13.0")
     (source
      (origin
        (method url-fetch)
@@ -836,13 +836,14 @@ then ported to the GNU / Linux environment.")
                            version "-apache.tgz"))
        (sha256
         (base32
-         "0fl2nrxvlgx9ja7yy3kd1zadpr98fxbvn3f6fl2mj87gryhkfqlk"))))
+         "1nh6xfyxs3mnnpgc6pancvdhv6ihz9lhsxdlg90gqa8n5r6lwfsr"))))
     (build-system cmake-build-system)
     (arguments
      `(#:configure-flags
        (list "-DUSE_SHARED_MBEDTLS_LIBRARY=ON")))
     (native-inputs
-     `(("perl" ,perl)))
+     `(("perl" ,perl)
+       ("python" ,python)))
     (synopsis "Small TLS library")
     (description
      "@code{mbed TLS}, formerly known as PolarSSL, makes it trivially easy
@@ -852,21 +853,38 @@ coding footprint.")
     (home-page "https://tls.mbed.org")
     (license license:asl2.0)))
 
+;; The Hiawatha Web server requires some specific features to be enabled.
+(define-public mbedtls-for-hiawatha
+  (hidden-package
+   (package
+     (inherit mbedtls-apache)
+     (arguments
+      (substitute-keyword-arguments
+          `(#:phases
+            (modify-phases %standard-phases
+              (add-after 'configure 'configure-extra-features
+                (lambda _
+                  (for-each (lambda (feature)
+                              (invoke "scripts/config.pl" "set" feature))
+                            (list "MBEDTLS_THREADING_C"
+                                  "MBEDTLS_THREADING_PTHREAD"))
+                  #t)))
+            ,@(package-arguments mbedtls-apache)))))))
+
 (define-public ghc-tls
   (package
     (name "ghc-tls")
-    (version "1.3.8")
+    (version "1.4.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://hackage.haskell.org/package/"
                                   "tls/tls-" version ".tar.gz"))
               (sha256
                (base32
-                "1rdidf18i781c0vdvy9yn79yh08hmcacf6fp3sgghyiy3h0wyh5l"))))
+                "1y083724mym28n6xfaz7pcc7zqxdhjpaxpbvzxfbs25qq2px3smv"))))
     (build-system haskell-build-system)
     (inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-cereal" ,ghc-cereal)
+     `(("ghc-cereal" ,ghc-cereal)
        ("ghc-data-default-class" ,ghc-data-default-class)
        ("ghc-memory" ,ghc-memory)
        ("ghc-cryptonite" ,ghc-cryptonite)
diff --git a/gnu/packages/tmux.scm b/gnu/packages/tmux.scm
index 1bc947844a..d8af54ce57 100644
--- a/gnu/packages/tmux.scm
+++ b/gnu/packages/tmux.scm
@@ -34,7 +34,7 @@
 (define-public tmux
   (package
     (name "tmux")
-    (version "2.7")
+    (version "2.8")
     (source (origin
              (method url-fetch)
              (uri (string-append
@@ -42,7 +42,7 @@
                     version "/tmux-" version ".tar.gz"))
              (sha256
               (base32
-               "0lnlhnafvi5700afr69g6gr62pblnd440jj0hxdbrxhk0c87vvcx"))))
+               "1fm22wva2znkcs5jczrnlxrpzsk2jlwdwy4dhzzyrbsgccsz6svz"))))
     (build-system gnu-build-system)
     (inputs
      `(("libevent" ,libevent)
diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm
index 58c870df5a..14a18c8c35 100644
--- a/gnu/packages/version-control.scm
+++ b/gnu/packages/version-control.scm
@@ -8,7 +8,7 @@
 ;;; Copyright © 2014, 2016 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2015 Kyle Meyer <kyle@kyleam.com>
-;;; Copyright © 2015, 2017 Ricardo Wurmus <rekado@elephly.net>
+;;; Copyright © 2015, 2017, 2018 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2016, 2017, 2018 Nils Gillmann <ng0@n0.is>
 ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
@@ -146,14 +146,14 @@ as well as the classic centralized workflow.")
    (name "git")
    ;; XXX When updating Git, check if the special 'git-source' input to cgit
    ;; needs to be updated as well.
-   (version "2.19.0")
+   (version "2.19.1")
    (source (origin
             (method url-fetch)
             (uri (string-append "mirror://kernel.org/software/scm/git/git-"
                                 version ".tar.xz"))
             (sha256
              (base32
-              "1x1y5z3awabmfg7hk6zb331jxngad4nal4507v96bnf0izsyy3qq"))))
+              "1dfv43lmdnxz42504jc89sihbv1d4d6kgqcz3c5ji140kfm5cl1l"))))
    (build-system gnu-build-system)
    (native-inputs
     `(("native-perl" ,perl)
@@ -166,7 +166,7 @@ as well as the classic centralized workflow.")
                 version ".tar.xz"))
           (sha256
            (base32
-            "1jvxiqvp9q4is3np063ny7rnmk5hm36d34bhi3cgv89njqdh8laf"))))))
+            "1vn6pi9yvw7rnb9dvi1yjrvv39fqd1m9mwbaffqwizs3gaf91br7"))))))
    (inputs
     `(("curl" ,curl)
       ("expat" ,expat)
@@ -427,7 +427,7 @@ everything from small to very large projects with speed and efficiency.")
 (define-public libgit2
   (package
     (name "libgit2")
-    (version "0.26.6")
+    (version "0.26.7")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/libgit2/libgit2/"
@@ -435,7 +435,7 @@ everything from small to very large projects with speed and efficiency.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0qjn1v5q282v8jih8rqjdqxr5v4n4manr0c8i3nnrf6sxd3xssbn"))
+                "1vy4dnbvhcq3pw8n8zz6clnsv2xnkrichl8k96w3lb6yyk0lln35"))
               (patches (search-patches "libgit2-mtime-0.patch"))
 
               ;; Remove bundled software.
@@ -712,13 +712,13 @@ default) of the repository.")
 (define-public python-gitdb
   (package
     (name "python-gitdb")
-    (version "2.0.3")
+    (version "2.0.4")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "gitdb2" version))
               (sha256
                (base32
-                "02azg62mr99b7cllyjrly77np3vw32y8nrxpa2xjapiyaga2j3mn"))))
+                "0i608q9c47rdsmyac1cn6s0hzwwj7cb957y8fc9wacc5lnw8ak5v"))))
     (build-system python-build-system)
     (arguments
      `(#:phases (modify-phases %standard-phases
@@ -733,7 +733,7 @@ default) of the repository.")
                                                   "file" (number->string filecount))
                             (lambda (port)
                               (format port "~a" filecount))))
-                        (and
+                        (begin
                          (invoke "git" "init")
                          (invoke "git" "config" "user.name" "Total Git")
                          (invoke "git" "config" "user.email" "git@localhost")
@@ -1031,12 +1031,48 @@ also walk each side of a merge and test those changes individually.")
                           ((" perl -")
                            (string-append " " perl " -")))
 
+                        (substitute* (find-files "src/triggers" ".*")
+                          ((" sed ")
+                           (string-append " " (which "sed") " ")))
+
+                        (substitute*
+                            '("src/triggers/post-compile/update-gitweb-access-list"
+                              "src/triggers/post-compile/ssh-authkeys-split"
+                              "src/triggers/upstream")
+                          ((" grep ")
+                           (string-append " " (which "grep") " ")))
+
                         ;; Avoid references to the store in authorized_keys.
                         ;; This works because gitolite-shell is in the PATH.
                         (substitute* "src/triggers/post-compile/ssh-authkeys"
                           (("\\$glshell \\$user")
                            "gitolite-shell $user"))
                         #t)))
+                  (add-before 'install 'patch-source
+                    (lambda* (#:key inputs #:allow-other-keys)
+                      ;; Gitolite uses cat to test the readability of the
+                      ;; pubkey
+                      (substitute* "src/lib/Gitolite/Setup.pm"
+                        (("\"cat ")
+                         (string-append "\"" (which "cat") " "))
+                        (("\"ssh-keygen")
+                         (string-append "\"" (which "ssh-keygen"))))
+
+                      (substitute* '("src/lib/Gitolite/Hooks/PostUpdate.pm"
+                                     "src/lib/Gitolite/Hooks/Update.pm")
+                        (("/usr/bin/perl")
+                         (string-append (assoc-ref inputs "perl")
+                                        "/bin/perl")))
+
+                      (substitute* "src/lib/Gitolite/Common.pm"
+                        (("\"ssh-keygen")
+                         (string-append "\"" (which "ssh-keygen")))
+                        (("\"logger\"")
+                         (string-append "\""
+                                        (assoc-ref inputs "inetutils")
+                                        "/bin/logger\"")))
+
+                      #t))
                   (replace 'install
                     (lambda* (#:key outputs #:allow-other-keys)
                       (let* ((output (assoc-ref outputs "out"))
@@ -1050,9 +1086,24 @@ also walk each side of a merge and test those changes individually.")
                                     (symlink (string-append sharedir "/" script)
                                              (string-append bindir "/" script)))
                                   '("gitolite" "gitolite-shell"))
+                        #t)))
+                  (add-after 'install 'wrap-scripts
+                    (lambda* (#:key inputs outputs #:allow-other-keys)
+                      (let ((out (assoc-ref outputs "out"))
+                            (coreutils (assoc-ref inputs "coreutils"))
+                            (findutils (assoc-ref inputs "findutils"))
+                            (git (assoc-ref inputs "git")))
+                        (wrap-program (string-append out "/bin/gitolite")
+                          `("PATH" ":" prefix
+                            ,(map (lambda (dir)
+                                    (string-append dir "/bin"))
+                                  (list out coreutils findutils git))))
                         #t))))))
     (inputs
-     `(("perl" ,perl)))
+     `(("perl" ,perl)
+       ("coreutils" ,coreutils)
+       ("findutils" ,findutils)
+       ("inetutils" ,inetutils)))
     ;; git and openssh are propagated because trying to patch the source via
     ;; regexp matching is too brittle and prone to false positives.
     (propagated-inputs
@@ -1068,14 +1119,14 @@ control to Git repositories.")
 (define-public mercurial
   (package
     (name "mercurial")
-    (version "4.4.1")
+    (version "4.6.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://www.mercurial-scm.org/"
                                  "release/mercurial-" version ".tar.gz"))
              (sha256
               (base32
-               "0ik2ypzxjr6vpcghxvn39a73gw52629n7vwak04gnbycsq95aalg"))))
+               "1bv6wgcdx8glihjjfg22khhc52mclsn4kwfqvzbzlg0b42h4xl0w"))))
     (build-system python-build-system)
     (arguments
      `(;; Restrict to Python 2, as Python 3 would require
@@ -1844,7 +1895,6 @@ be served with a HTTP file server of your choice.")
        ("ghc-hashable" ,ghc-hashable)
        ("ghc-html" ,ghc-html)
        ("ghc-mmap" ,ghc-mmap)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-old-time" ,ghc-old-time)
        ("ghc-parsec" ,ghc-parsec)
        ("ghc-random" ,ghc-random)
@@ -2053,7 +2103,7 @@ directory full of HOWTOs.")
 (define-public git-annex
   (package
     (name "git-annex")
-    (version "6.20180807")
+    (version "6.20180926")
     (source
      (origin
        (method url-fetch)
@@ -2061,7 +2111,7 @@ directory full of HOWTOs.")
                            "git-annex/git-annex-" version ".tar.gz"))
        (sha256
         (base32
-         "1wkqh1y58m0z1mf2j33qhndpxcjwv8mbv384kdk17vn0lp9zas1s"))))
+         "1251rj8h63y30sfqk0zh670yhz14p256y59n3590pg015pf3575d"))))
     (build-system haskell-build-system)
     (arguments
      `(#:configure-flags
@@ -2137,7 +2187,6 @@ directory full of HOWTOs.")
        ("ghc-memory" ,ghc-memory)
        ("ghc-monad-control" ,ghc-monad-control)
        ("ghc-monad-logger" ,ghc-monad-logger)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-network" ,ghc-network)
        ("ghc-old-locale" ,ghc-old-locale)
        ("ghc-optparse-applicative" ,ghc-optparse-applicative)
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index 4882f0476a..a6930abfda 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -29,6 +29,8 @@
 ;;; Copyright © 2018 Brendan Tildesley <brendan.tildesley@openmailbox.org>
 ;;; Copyright © 2018 Arun Isaac <arunisaac@systemreboot.net>
 ;;; Copyright © 2018 Björn Höfling <bjoern.hoefling@bjoernhoefling.de>
+;;; Copyright © 2018 Mark Meyer <mark@ofosos.org>
+;;; Copyright © 2018 Gábor Boskovit <boskovits@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -390,7 +392,7 @@ and creating Matroska files from other media files (@code{mkvmerge}).")
 (define-public x265
   (package
     (name "x265")
-    (version "2.8")
+    (version "2.9")
     (source
       (origin
         (method url-fetch)
@@ -398,9 +400,8 @@ and creating Matroska files from other media files (@code{mkvmerge}).")
                             "x265_" version ".tar.gz"))
         (sha256
          (base32
-          "0qx8mavwdzdpkkby7n29i9av7zsnklavacwfz537mf62q2pzjnbf"))
-        (patches (search-patches "x265-fix-ppc64le-build.patch"
-                                 "x265-arm-asm-primitives.patch"))
+          "090hp4216isis8q5gb7bwzia8rfyzni54z21jnwm97x3hiy6ibpb"))
+        (patches (search-patches "x265-detect512-all-arches.patch"))
         (modules '((guix build utils)))
         (snippet '(begin
                     (delete-file-recursively "source/compat/getopt")
@@ -408,12 +409,8 @@ and creating Matroska files from other media files (@code{mkvmerge}).")
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f ; tests are skipped if cpu-optimized code isn't built
-       ;; Currently the source code doesn't check for aarch64.
-       ,@(if (any (cute string-prefix? <> (or (%current-system)
-                                              (%current-target-system)))
-                  '("armhf" "aarch64"))
-           '(#:configure-flags '("-DENABLE_PIC=TRUE"))
-           '())
+       ;; Ensure position independent code for everyone.
+       #:configure-flags '("-DENABLE_PIC=TRUE")
        #:phases
        (modify-phases %standard-phases
          (add-before 'configure 'prepare-build
@@ -1121,7 +1118,7 @@ SVCD, DVD, 3ivx, DivX 3/4/5, WMV and H.264 movies.")
 (define-public mpv
   (package
     (name "mpv")
-    (version "0.29.0")
+    (version "0.29.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1129,7 +1126,7 @@ SVCD, DVD, 3ivx, DivX 3/4/5, WMV and H.264 movies.")
                     ".tar.gz"))
               (sha256
                (base32
-                "06bk8836brzik1qmq8kycwg5n35r438sd2176k6msjg5rrwghakp"))
+                "08x63hlpj6s8xixmdbx6raff5p5mih7cnk0bcql9f3wrs5hx9ygr"))
               (file-name (string-append name "-" version ".tar.gz"))))
     (build-system waf-build-system)
     (native-inputs
@@ -1242,7 +1239,8 @@ access to mpv's powerful playback capabilities.")
               (sha256
                (base32
                 "0vvh89hvp8qg9an9vcmwb7d9k3nixhxaz6zi65qdjnd0i56kkcz6"))
-              (patches (search-patches "libvpx-CVE-2016-2818.patch"))))
+              (patches (search-patches "libvpx-use-after-free-in-postproc.patch"
+                                       "libvpx-CVE-2016-2818.patch"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags (list "--enable-shared"
@@ -1270,7 +1268,7 @@ access to mpv's powerful playback capabilities.")
 (define-public youtube-dl
   (package
     (name "youtube-dl")
-    (version "2018.09.08")
+    (version "2018.10.05")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://yt-dl.org/downloads/"
@@ -1278,7 +1276,7 @@ access to mpv's powerful playback capabilities.")
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0vwc4faqdddrb3nm4fzmkr60n5rc2zwyy8jwrrjad60kcp8isf05"))))
+                "1iq02kwxdgh07bf0w0fvbsjbdshs4kja35gy8m70ji9cj10l1mbw"))))
     (build-system python-build-system)
     (arguments
      ;; The problem here is that the directory for the man page and completion
@@ -1862,41 +1860,36 @@ and custom quantization matrices.")
     (license license:gpl2+)))
 
 (define-public streamlink
-  ;; Release tarball doesn't contain ‘tests/resources/dash/’ directory.
-  (let ((commit "2dca7930a938f60b48d8e23260963ea7c49d979f"))
-    (package
-      (name "streamlink")
-      (version (git-version "0.13.0" "1" commit))
-      (source
-       (origin
-         (method git-fetch)
-         (uri (git-reference
-               (url "https://github.com/streamlink/streamlink.git")
-               (commit commit)))
-         (file-name (git-file-name name version))
-         (sha256
-          (base32
-           "0vq19aspshim63aj8yl2p64ykrbk2mwwlawdx427b3j2djlc5qhw"))))
-      (build-system python-build-system)
-      (home-page "https://github.com/streamlink/streamlink")
-      (native-inputs
-       `(("python-freezegun" ,python-freezegun)
-         ("python-pytest" ,python-pytest)
-         ("python-mock" ,python-mock)
-         ("python-requests-mock" ,python-requests-mock)))
-      (propagated-inputs
-       `(("python-pysocks" ,python-pysocks)
-         ("python-websocket-client" ,python-websocket-client)
-         ("python-iso3166" ,python-iso3166)
-         ("python-iso639" ,python-iso639)
-         ("python-isodate", python-isodate)
-         ("python-pycryptodome" ,python-pycryptodome)
-         ("python-requests" ,python-requests)
-         ("python-urllib3" ,python-urllib3)))
-      (synopsis "Extract streams from various services")
-      (description "Streamlink is command-line utility that extracts streams
+  (package
+    (name "streamlink")
+    (version "0.14.2")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (pypi-uri "streamlink" version))
+        (sha256
+         (base32
+          "0l2145fd60i76afjisfxd48cwhwyir07i7s3bnimdq5db2kzkix8"))))
+    (build-system python-build-system)
+    (home-page "https://github.com/streamlink/streamlink")
+    (native-inputs
+     `(("python-freezegun" ,python-freezegun)
+       ("python-pytest" ,python-pytest)
+       ("python-mock" ,python-mock)
+       ("python-requests-mock" ,python-requests-mock)))
+    (propagated-inputs
+     `(("python-pysocks" ,python-pysocks)
+       ("python-websocket-client" ,python-websocket-client)
+       ("python-iso3166" ,python-iso3166)
+       ("python-iso639" ,python-iso639)
+       ("python-isodate", python-isodate)
+       ("python-pycryptodome" ,python-pycryptodome)
+       ("python-requests" ,python-requests)
+       ("python-urllib3" ,python-urllib3)))
+    (synopsis "Extract streams from various services")
+    (description "Streamlink is command-line utility that extracts streams
 from sites like Twitch.tv and pipes them into a video player of choice.")
-      (license license:bsd-2))))
+    (license license:bsd-2)))
 
 (define-public livestreamer
   (deprecated-package "livestreamer" streamlink))
@@ -1941,7 +1934,7 @@ from sites like Twitch.tv and pipes them into a video player of choice.")
 (define-public mlt
   (package
     (name "mlt")
-    (version "6.4.1")
+    (version "6.10.0")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/mltframework/mlt/"
@@ -1949,7 +1942,7 @@ from sites like Twitch.tv and pipes them into a video player of choice.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "10m3ry0b2pvqx3bk34qh5dq337nn8pkc2gzfyhsj4nv9abskln47"))
+                "1zzdj1g3g24q6v8hd0v34lv0pkh37a13fhjpl44h1ffi00mz3577"))
               (modules '((guix build utils)))
               (snippet '(begin
                           ;; As of glibc 2.26, <xlocale.h> no longer is.
@@ -1959,7 +1952,7 @@ from sites like Twitch.tv and pipes them into a video player of choice.")
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f ; no tests
-       #:make-flags '("CC=gcc")
+       #:make-flags '("CC=gcc" "CXX=g++ -std=gnu++11")
        #:configure-flags
        (list "--enable-gpl3"
              "--enable-gpl")
@@ -1978,11 +1971,16 @@ from sites like Twitch.tv and pipes them into a video player of choice.")
      `(("alsa-lib" ,alsa-lib)
        ("ffmpeg" ,ffmpeg-3.4)
        ("fftw" ,fftw)
+       ("frei0r-plugins" ,frei0r-plugins)
+       ("gdk-pixbuf" ,gdk-pixbuf)
+       ("gtk+" ,gtk+-2)
        ("libxml2" ,libxml2)
        ("jack" ,jack-1)
        ("ladspa" ,ladspa)
        ("libsamplerate" ,libsamplerate)
        ("pulseaudio" ,pulseaudio)
+       ("qtbase" ,qtbase)
+       ("qtsvg" ,qtsvg)
        ("sdl" ,sdl)
        ("sox" ,sox)))
     (native-inputs
diff --git a/gnu/packages/vpn.scm b/gnu/packages/vpn.scm
index 85bbe7e9c6..9b1f26aa7d 100644
--- a/gnu/packages/vpn.scm
+++ b/gnu/packages/vpn.scm
@@ -347,6 +347,16 @@ private network between hosts on the internet.")
         (base32
          "0pqk43kd7crqhg6qgnl8kapncwgw1xgaf02zarzypcw64kvdih9h"))))
     (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-FHS-file-names
+           (lambda _
+             (substitute* "sshuttle/client.py"
+               (("/usr/bin/env") (which "env")))
+             (substitute* "sshuttle/ssh.py"
+               (("/bin/sh") "sh"))
+             #t)))))
     (native-inputs
      `(("python-setuptools-scm" ,python-setuptools-scm)
        ;; For tests only.
diff --git a/gnu/packages/vulkan.scm b/gnu/packages/vulkan.scm
index f256e21187..ff1088d2e1 100644
--- a/gnu/packages/vulkan.scm
+++ b/gnu/packages/vulkan.scm
@@ -163,7 +163,7 @@ interpretation of the specifications for these languages.")
 (define-public vulkan-headers
   (package
     (name "vulkan-headers")
-    (version "1.1.82.0")
+    (version "1.1.85.0")
     (source
      (origin
        (method url-fetch)
@@ -172,7 +172,7 @@ interpretation of the specifications for these languages.")
              "archive/sdk-" version ".tar.gz"))
        (sha256
         (base32
-         "1rbra47f1dkw5bjzvm0k9s2f89c2x80j904ply4bxks7sl3xlwyz"))))
+         "166hqqb97kjg6h9vp8yxb1cq02i1kqaxvl693482gf8v21fl7ink"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f)) ; No tests.
@@ -195,7 +195,7 @@ interpretation of the specifications for these languages.")
              "archive/sdk-" version ".tar.gz"))
        (sha256
         (base32
-         "032vfysb8mi19c2lx08vc6k9mbzxmiy17wp7a22vpgwwv69kxkc6"))))
+         "04d53ynlc0ww8r67hv4sxwg5sirjhpr1laaa9hc6j4niliw0166n"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f ;FIXME: 23/39 tests fail.  Try "tests/run_all_tests.sh".
@@ -251,7 +251,7 @@ and the ICD.")
              "archive/sdk-" version ".tar.gz"))
        (sha256
         (base32
-         "175qhfg9lxxfm5zks6jxaybcxamwd9q5kvjq8ikf2dbmskgybr92"))))
+         "0r26px9rh09giddajlmafv21rx1la1y3bbnjgnpai8aw98wvq9mm"))))
     (build-system cmake-build-system)
     (inputs
      `(("glslang" ,glslang)
@@ -346,11 +346,10 @@ shader compilation.")
       (license license:asl2.0))))
 
 (define-public vkd3d
-  (let ((commit "020c119e2da0786d8be0615cff961c190b00d62d") ; Release 1.0.
-        (revision "0"))
+  (let ((commit "ecda316ef54d70bf1b3e860755241bb75873e53f")) ; Release 1.1.
     (package
      (name "vkd3d")
-     (version "1.0")
+     (version "1.1")
      (source
       (origin
        (method git-fetch)
@@ -359,7 +358,7 @@ shader compilation.")
              (commit commit)))
        (sha256
         (base32
-         "084svxhigs8r0725jv6gs7wwrxb9x4igyg5bgvgpcfw4aq0k69gn"))
+         "05a28kspy8gzng181w28zjqdb3pj2ss83b0lwnppxbcdzsz7rvrf"))
        (file-name (string-append name "-" version "-checkout"))))
      (build-system gnu-build-system)
      (arguments
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index ac8e48eb10..4a8699c4c0 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -124,14 +124,14 @@
 (define-public httpd
   (package
     (name "httpd")
-    (version "2.4.34")
+    (version "2.4.35")
     (source (origin
              (method url-fetch)
              (uri (string-append "mirror://apache/httpd/httpd-"
                                  version ".tar.bz2"))
              (sha256
               (base32
-               "1w1q2smdgf6ln0x741lk5pv5r0gzrxj2iza1vslhifzy65bcjlzs"))))
+               "0mlvwsm7hmpc7db6lfc2nx3v4cll3qljjxhjhgsw6aniskywc1r6"))))
     (build-system gnu-build-system)
     (native-inputs `(("pcre" ,pcre "bin")))       ;for 'pcre-config'
     (inputs `(("apr" ,apr)
@@ -1862,15 +1862,15 @@ MIME type directly to the browser, without being processed through Catalyst.")
 (define-public perl-catalyst-runtime
   (package
     (name "perl-catalyst-runtime")
-    (version "5.90118")
+    (version "5.90119")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://cpan/authors/id/H/HA/HAARG/"
+       (uri (string-append "mirror://cpan/authors/id/E/ET/ETHER/"
                            "Catalyst-Runtime-" version ".tar.gz"))
        (sha256
         (base32
-         "0cws3szx3vvh0372qdx8fypgv6qphcc3v81rbq30sl1ghby7ksd3"))))
+         "1iw7x9rqk3sz2hm1bw01blz5vwm7zlljdf4xj3r8vz54f1yggzqr"))))
     (build-system perl-build-system)
     (native-inputs
      `(("perl-test-fatal" ,perl-test-fatal)))
@@ -5019,12 +5019,14 @@ deployments.")
                                "--localstatedir=/var")
        #:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'patch-/bin/sh
+         (add-after 'unpack 'use-absolute-file-names
            (lambda _
              (substitute* '("bin/varnishtest/vtc_varnish.c"
                             "bin/varnishtest/vtc_process.c"
                             "bin/varnishd/mgt/mgt_vcc.c")
                (("/bin/sh") (which "sh")))
+             (substitute* "bin/varnishd/mgt/mgt_shmem.c"
+               (("rm -rf") (string-append (which "rm") " -rf")))
              #t))
          (add-before 'install 'patch-Makefile
            (lambda _
@@ -5171,7 +5173,7 @@ functions of Tidy.")
 (define-public hiawatha
   (package
     (name "hiawatha")
-    (version "10.7")
+    (version "10.8.3")
     (source
      (origin
        (method url-fetch)
@@ -5179,28 +5181,34 @@ functions of Tidy.")
                            "hiawatha-" version ".tar.gz"))
        (modules '((guix build utils)))
        (snippet '(begin
-                   ;; We use our packaged mbedtls, so delete the included copy.
-                   (delete-file-recursively "mbedtls")
+                   ;; We use packaged libraries, so delete the bundled copies.
+                   (for-each delete-file-recursively
+                             (list "nghttp2" "mbedtls"))
                    #t))
        (sha256
         (base32
-         "0x2zfc8kc6c7rl4gwymwmg13w1c60biv6c6c9fvzpnl59bc9jgin"))))
+         "0w7047pwijhsbvvv1qjynp7gvn0nil56w82f7ax0gabrg7ddzk6s"))))
     (build-system cmake-build-system)
     (arguments
-     `(#:tests? #f ; No tests included
+     `(#:tests? #f                      ; no tests included
        #:configure-flags (list (string-append "-DUSE_SYSTEM_MBEDTLS=on")
+                               (string-append "-DENABLE_HTTP2=on")
+                               (string-append "-DUSE_SYSTEM_NGHTTP2=on")
                                (string-append "-DENABLE_TOMAHAWK=on")
+                               (string-append "-DLOG_DIR=/var/log/hiawatha")
+                               (string-append "-DPID_DIR=/run")
                                (string-append "-DWEBROOT_DIR="
                                               (assoc-ref %outputs "out")
-                                              "/share/hiawatha/html"))
+                                              "/share/hiawatha/html")
+                               (string-append "-DWORK_DIR=/var/lib/hiawatha"))
        #:phases
        (modify-phases %standard-phases
-         (add-after 'install 'remove-empty-dirs
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out")))
-               ;; The directories in "var" are empty, remove them.
-               (delete-file-recursively (string-append out "/var"))
-               #t)))
+         (add-after 'unpack 'install-no-empty-directories
+           (lambda _
+             (substitute* "CMakeLists.txt"
+               (("install\\(DIRECTORY DESTINATION" match)
+                (string-append "#" match)))
+             #t))
          (add-after 'install 'wrap
            (lambda* (#:key inputs outputs #:allow-other-keys)
              ;; Make sure 'hiawatha' finds 'mbedtls'.
@@ -5210,11 +5218,12 @@ functions of Tidy.")
                (wrap-program (string-append sbin "/hiawatha")
                  `("PATH" ":" prefix (,mbed)))))))))
     (inputs
-     ;; TODO: package "hiawatha-monitor", an optional dependency of "hiawatha"
-     `(("mbedtls-apache" ,mbedtls-apache) ;Hiawatha includes this version.
-       ("zlib" ,zlib)
-       ("libxslt" ,libxslt)
-       ("libxml2" ,libxml2)))
+     ;; TODO: package "hiawatha-monitor", an optional dependency of "hiawatha".
+     `(("libxslt" ,libxslt)
+       ("libxml2" ,libxml2)
+       ("mbedtls-apache" ,mbedtls-for-hiawatha)
+       ("nghttp2" ,nghttp2 "lib")
+       ("zlib" ,zlib)))
     (home-page "https://www.hiawatha-webserver.org")
     (synopsis "Webserver with focus on security")
     (description
diff --git a/gnu/packages/webkit.scm b/gnu/packages/webkit.scm
index b671e44d18..c5238a8a65 100644
--- a/gnu/packages/webkit.scm
+++ b/gnu/packages/webkit.scm
@@ -24,6 +24,7 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix utils)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system gnu)
   #:use-module (gnu packages)
@@ -32,6 +33,7 @@
   #:use-module (gnu packages databases)
   #:use-module (gnu packages enchant)
   #:use-module (gnu packages flex)
+  #:use-module (gnu packages gcc)
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages gl)
   #:use-module (gnu packages glib)
@@ -85,23 +87,7 @@
                           ;; XXX Disable WOFF2 ‘web fonts’.  These were never
                           ;; supported in our previous builds.  Enabling them
                           ;; requires building libwoff2 and possibly woff2dec.
-                          "-DUSE_WOFF2=OFF")
-       #:phases
-       (modify-phases %standard-phases
-         (add-after
-          'set-paths 'add-gst-plugins-base-include-path
-          (lambda* (#:key inputs #:allow-other-keys)
-            ;; XXX Work around a problem in the build system, which neglects
-            ;; to add -I for gst-plugins-base when compiling
-            ;; Source/WebKit2/UIProcess/WebPageProxy.cpp, apparently assuming
-            ;; that it will be in the same directory as gstreamer's header
-            ;; files.
-            (setenv "CPATH"
-                    (string-append (getenv "C_INCLUDE_PATH")
-                                   ":"
-                                   (assoc-ref inputs "gst-plugins-base")
-                                   "/include/gstreamer-1.0"))
-            #t)))))
+                          "-DUSE_WOFF2=OFF")))
     (native-inputs
      `(("bison" ,bison)
        ("gettext" ,gettext-minimal)
@@ -149,3 +135,32 @@ HTML/CSS applications to full-fledged web browsers.")
                    license:lgpl2.1+
                    license:bsd-2
                    license:bsd-3))))
+
+;; This version of webkitgtk needs to be kept separate, because it requires a
+;; newer version of GCC than our default compiler, and this causes problems
+;; when linked with C++ libraries built using our default compiler.  For now,
+;; we use this newer webkitgtk only for selected packages, e.g. epiphany.
+(define-public webkitgtk-2.22
+  (package/inherit webkitgtk
+    (name "webkitgtk")
+    (version "2.22.2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://www.webkitgtk.org/releases/"
+                                  name "-" version ".tar.xz"))
+              (sha256
+               (base32
+                "1flrbr8pzbrlwv09b4pmgh6vklw7jghd2lgrhcb72vl9s7a8fm1l"))))
+    (native-inputs
+     `(("gcc" ,gcc-7)  ; webkitgtk-2.22 requires gcc-6 or newer
+       ,@(package-native-inputs webkitgtk)))
+    (arguments
+     `(#:phases (modify-phases %standard-phases
+                  (add-before 'configure 'work-around-gcc-7-include-path-issue
+                    ;; FIXME: Work around a problem with gcc-7 includes (see
+                    ;; <https://bugs.gnu.org/30756>).
+                    (lambda _
+                      (unsetenv "C_INCLUDE_PATH")
+                      (unsetenv "CPLUS_INCLUDE_PATH")
+                      #t)))
+       ,@(package-arguments webkitgtk)))))
diff --git a/gnu/packages/wine.scm b/gnu/packages/wine.scm
index 782776606d..169cc6e3c5 100644
--- a/gnu/packages/wine.scm
+++ b/gnu/packages/wine.scm
@@ -225,7 +225,7 @@ integrate Windows applications into your desktop.")
 (define-public wine-staging-patchset-data
   (package
    (name "wine-staging-patchset-data")
-   (version "3.16")
+   (version "3.18")
    (source
     (origin
       (method git-fetch)
@@ -235,7 +235,7 @@ integrate Windows applications into your desktop.")
       (file-name (git-file-name name version))
       (sha256
        (base32
-        "0c1bs9qpxlvld6jkwjri2v8jaixxn1r5b0m9r5hnkfrnpl7z7cfv"))))
+        "18g1lmqzkc7ngppynimfvza1gkdhqlnjbvnckmaws847ns4i0kzp"))))
    (build-system trivial-build-system)
    (native-inputs
     `(("bash" ,bash)
@@ -281,7 +281,7 @@ integrate Windows applications into your desktop.")
               (file-name (string-append name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0g55l41apiwgblfk9ihzd96003gd32w5ng79f96hmiwhyzwbqhxd"))))
+                "0xqs76hxcym8nb95r7l72xx0msbscp7fhkr1wrv4r0923d5x9s4v"))))
     (inputs `(("autoconf" ,autoconf) ; for autoreconf
               ("gtk+" ,gtk+)
               ("libva" ,libva)
diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index 08f82ba2d2..68d497e955 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -17,6 +17,7 @@
 ;;; Copyright © 2017 Oleg Pykhalov <go.wigust@gmail.com>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Pierre-Antoine Rouby <contact@parouby.fr>
+;;; Copyright © 2018 Meiyo Peng <meiyo.peng@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -233,6 +234,46 @@ from scratch.  i3 is primarily targeted at advanced users and
 developers.")
     (license license:bsd-3)))
 
+(define-public i3blocks
+  (let ((commit "37f23805ff886639163fbef8aedba71c8071eff8")
+        (revision "1"))
+    (package
+      (name "i3blocks")
+      (version (string-append "1.4-" revision "."
+                              (string-take commit 7)))
+      (source (origin
+                (method git-fetch)
+                (uri (git-reference
+                      (url "https://github.com/vivien/i3blocks.git")
+                      (commit commit)))
+                (sha256
+                 (base32
+                  "15rnrcajzyrmhlz1a21qqsjlj3dkib70806dlb386fliylc2kisb"))
+                (file-name (string-append name "-" version "-checkout"))))
+      (build-system gnu-build-system)
+      (arguments
+       `(#:make-flags (list "CC=gcc" (string-append "PREFIX=" %output))
+         #:phases (modify-phases %standard-phases
+                    (add-after 'unpack 'autogen
+                      (lambda _ (invoke "sh" "autogen.sh")))
+                    (add-after 'install 'install-doc
+                      (lambda* (#:key outputs #:allow-other-keys)
+                        (let* ((out (assoc-ref outputs "out"))
+                               (man1 (string-append out "/share/man/man1")))
+                          (install-file "docs/i3blocks.1" man1)
+                          #t))))))
+      (native-inputs
+       `(("autoconf" ,autoconf)
+         ("automake" ,automake)
+         ("pkg-config" ,pkg-config)))
+      (home-page "https://github.com/vivien/i3blocks")
+      (synopsis "Minimalist scheduler for status bar scripts")
+      (description "i3blocks executes your command lines and generates a
+status line from their output.  The generated line is meant to be displayed by
+the i3 window manager through its i3bar component, as an alternative to
+i3status.")
+      (license license:gpl3+))))
+
 (define-public perl-anyevent-i3
   (package
     (name "perl-anyevent-i3")
@@ -455,7 +496,7 @@ desktop environment.")
 (define-public xmonad
   (package
     (name "xmonad")
-    (version "0.14")
+    (version "0.14.2")
     (synopsis "Tiling window manager")
     (source (origin
               (method url-fetch)
@@ -463,11 +504,10 @@ desktop environment.")
                                   name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0lq3k0ap7jxrrswpd954mqa6h8diccbif5srcgbmr39y6y8x0mm4"))))
+                "0gqyivpw8z1x73p1l1fpyq1wc013a1c07r6xn1a82liijs91b949"))))
     (build-system haskell-build-system)
     (inputs
      `(("ghc-extensible-exceptions" ,ghc-extensible-exceptions)
-       ("ghc-mtl"                   ,ghc-mtl)
        ("ghc-quickcheck"            ,ghc-quickcheck)
        ("ghc-semigroups"            ,ghc-semigroups)
        ("ghc-setlocale"             ,ghc-setlocale)
@@ -505,14 +545,14 @@ tiled on several screens.")
 (define-public xmobar
   (package
     (name "xmobar")
-    (version "0.27")
+    (version "0.28")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://hackage/package/xmobar/"
                                   name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0agx490q6sbmv3vfq33ys8dsrgwizj3bmha4i1pkxz5wp5q8cx3l"))))
+                "1xh87asg8y35srvp7d3gyyy4bkxsw122liihxgzgm8pqv2z3h4zd"))))
     (build-system haskell-build-system)
     (native-inputs
      `(("ghc-hspec" ,ghc-hspec)
@@ -560,11 +600,11 @@ Haskell, no knowledge of the language is required to install and use it.")
          "1660w3xhbfrlq8b8s1rviq2mcn1vyqpypli4023gqxwry52brk6y"))))
     (build-system haskell-build-system)
     (propagated-inputs
-     `(("ghc-mtl" ,ghc-mtl)
-       ("ghc-old-time" ,ghc-old-time)
+     `(("ghc-old-time" ,ghc-old-time)
        ("ghc-random" ,ghc-random)
        ("ghc-utf8-string" ,ghc-utf8-string)
        ("ghc-extensible-exceptions" ,ghc-extensible-exceptions)
+       ("ghc-semigroups", ghc-semigroups)
        ("ghc-x11" ,ghc-x11)
        ("ghc-x11-xft" ,ghc-x11-xft)
        ("xmonad" ,xmonad)))
diff --git a/gnu/packages/wxwidgets.scm b/gnu/packages/wxwidgets.scm
index f1a61329e8..6cbfd76e10 100644
--- a/gnu/packages/wxwidgets.scm
+++ b/gnu/packages/wxwidgets.scm
@@ -49,7 +49,7 @@
 (define-public wxwidgets
   (package
     (name "wxwidgets")
-    (version "3.0.3")
+    (version "3.0.4")
     (source
      (origin
        (method url-fetch)
@@ -57,7 +57,7 @@
                            "releases/download/v" version
                            "/wxWidgets-" version ".tar.bz2"))
        (sha256
-        (base32 "0yrhp5cs2g33cpbdwdzicmm5m4mfnlvxwv031x9266zc90zh7j08"))))
+        (base32 "1w7pgfqjab7n84lc4aarydl3g55d1hdgl2ilwml766r6inc7y5cn"))))
     (build-system glib-or-gtk-build-system)
     (inputs
      `(("glu" ,glu)
diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm
index d886d3e69b..5f30df5efa 100644
--- a/gnu/packages/xdisorg.scm
+++ b/gnu/packages/xdisorg.scm
@@ -1497,3 +1497,27 @@ before the system goes to sleep.")
      "Pyperclip is a clipboard module for Python, handling copy/pasting from
 the X11 clipboard")
     (license license:bsd-3)))
+
+(define-public numlockx
+  (package
+    (name "numlockx")
+    (version "1.2")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    ;; It seems that upstream is gone.
+                    (url "https://github.com/rg3/numlockx")
+                    (commit version)))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "1w49fayhwzn5rx0z1q2lrvm7z8jrd34lgb89p853a024bixc3cf2"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("xorg-server" ,xorg-server)))
+    (home-page "https://github.com/rg3/numlockx")
+    (synopsis "Turns on the numlock key in X11")
+    (description "@command{numlockx} is a tiny program that lets you turn on
+the numlock key in X11.  It can be called from the user's initialization files
+to automatically turn it on on login.")
+    (license license:expat)))
diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm
index 0cecb5bf7c..835bd42354 100644
--- a/gnu/packages/xml.scm
+++ b/gnu/packages/xml.scm
@@ -681,20 +681,23 @@ This module provide functions which simplify writing tests for
 (define-public perl-xml-compile
   (package
     (name "perl-xml-compile")
-    (version "1.54")
+    (version "1.60")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://cpan/authors/id/M/MA/MARKOV/"
                                   "XML-Compile-" version ".tar.gz"))
               (sha256
                (base32
-                "1hp41960bpqxvv1samv9hc0ghhmvs3i16r4rfl9yp54lp6jhsr2c"))))
+                "04vv7wy5v1l38xsfdbacvyd90qircvnrs2f3ysljm1nhq8mycmwm"))))
     (build-system perl-build-system)
     (propagated-inputs
-     `(("perl-log-report" ,perl-log-report)
+     `(("perl-carp" ,perl-carp)
+       ("perl-log-report" ,perl-log-report)
        ("perl-xml-compile-tester" ,perl-xml-compile-tester)
        ("perl-xml-libxml" ,perl-xml-libxml)
-       ("perl-test-deep" ,perl-test-deep)))
+       ("perl-scalar-list-utils" ,perl-scalar-list-utils)
+       ("perl-test-deep" ,perl-test-deep)
+       ("perl-types-serialiser" ,perl-types-serialiser)))
     (home-page "https://metacpan.org/release/XML-Compile")
     (synopsis "Compilation-based XML processing")
     (description
@@ -783,17 +786,17 @@ server, collect the answer, and finally decoding the XML to Perl.")
 (define-public perl-xml-feed
   (package
     (name "perl-xml-feed")
-    (version "0.53")
+    (version "0.55")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://cpan/authors/id/D/DA/DAVECROSS/"
                                   "XML-Feed-" version ".tar.gz"))
               (sha256
                (base32
-                "07b165g6wk8kqwpl49r3n0kag6p2nrkyp3ch0h8qyxb6nrnkkq7c"))))
+                "0am345qzy5rxxnzh13l6p18a7drgkzmmlkgrgl4cv3b2j1pwls3i"))))
     (build-system perl-build-system)
     (arguments
-     `(#:tests? #f)) ; Tests require internet connection
+     `(#:tests? #f))                    ; tests require internet connection
     (native-inputs
      `(("perl-module-build" ,perl-module-build)
        ("perl-uri" ,perl-uri)
@@ -1133,7 +1136,7 @@ XSLT and EXSLT.")
 (define-public html-xml-utils
  (package
    (name "html-xml-utils")
-   (version "7.6")
+   (version "7.7")
    (source
     (origin
       (method url-fetch)
@@ -1142,7 +1145,7 @@ XSLT and EXSLT.")
             version ".tar.gz"))
       (sha256
        (base32
-        "0l97ps089byy62838wf2jwvvc465iw29z9r5kwmwcq7f3bn11y3m"))))
+        "1vwqp5q276j8di9zql3kygf31z2frp2c59yjqlrvvwcvccvkcdwr"))))
    (build-system gnu-build-system)
    (home-page "https://www.w3.org/Tools/HTML-XML-utils/")
    (synopsis "Command line utilities to manipulate HTML and XML files")
@@ -2091,7 +2094,6 @@ derivations of regular expressions.")
     (build-system haskell-build-system)
     (inputs
      `(("ghc-parsec" ,ghc-parsec)
-       ("ghc-mtl" ,ghc-mtl)
        ("ghc-hxt-charproperties" ,ghc-hxt-charproperties)
        ("ghc-hxt-unicode" ,ghc-hxt-unicode)
        ("ghc-hxt-regex-xmlschema" ,ghc-hxt-regex-xmlschema)
diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index cee87756af..1af8fed5e7 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -5910,7 +5910,7 @@ basic eye-candy effects.")
 (define-public xpra
   (package
     (name "xpra")
-    (version "2.3.3")
+    (version "2.4")
     (source
      (origin
        (method url-fetch)
@@ -5918,7 +5918,7 @@ basic eye-candy effects.")
                            version ".tar.xz"))
        (sha256
         (base32
-         "1azvvddjfq7lb5kmbn0ilgq2nf7pmymsc3b9lhbjld6w156qdv01"))))
+         "0blzx231sr1ri1zwzpwzf611sq9104bv3ccvnap9pbvfrc05sfwx"))))
     (build-system python-build-system)
     (inputs `(("ffmpeg" ,ffmpeg)
               ("flac" ,flac)