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author | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 13:15:24 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2019-03-13 13:17:52 +0100 |
commit | f9201d670406e1256ef1876f7a765b21faf224bc (patch) | |
tree | 04a4cd2ce5c8bfe595de2594878a68ed227efc6e /gnu/packages | |
parent | f088775799f4470d8c7e2c16380f83eea4f24e0e (diff) | |
download | guix-patches-f9201d670406e1256ef1876f7a765b21faf224bc.tar guix-patches-f9201d670406e1256ef1876f7a765b21faf224bc.tar.gz |
gnu: Add r-geoquery.
* gnu/packages/bioconductor.scm (r-geoquery): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a95fbbf3eb..c9d5755963 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2123,3 +2123,34 @@ distributions.") different normalization schemes for single-cell RNA-seq and other high-throughput analyses.") (license license:artistic2.0))) + +(define-public r-geoquery + (package + (name "r-geoquery") + (version "2.50.5") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "GEOquery" version)) + (sha256 + (base32 + "074dl00c8yi1ihpjkw7vl9vy2hggvipib0jn0hli0wrw7x1h9hg6")))) + (properties `((upstream-name . "GEOquery"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-dplyr" ,r-dplyr) + ("r-httr" ,r-httr) + ("r-limma" ,r-limma) + ("r-magrittr" ,r-magrittr) + ("r-readr" ,r-readr) + ("r-tidyr" ,r-tidyr) + ("r-xml2" ,r-xml2))) + (home-page "https://github.com/seandavi/GEOquery/") + (synopsis "Get data from NCBI Gene Expression Omnibus (GEO)") + (description + "The NCBI Gene Expression Omnibus (GEO) is a public repository of +microarray data. Given the rich and varied nature of this resource, it is +only natural to want to apply BioConductor tools to these data. GEOquery is +the bridge between GEO and BioConductor.") + (license license:gpl2))) |