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author | Ricardo Wurmus <rekado@elephly.net> | 2020-12-29 22:16:15 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2020-12-29 22:17:37 +0100 |
commit | a7d6e1b6a16534a3afdcecf5d45ed3f5ba9bc3c1 (patch) | |
tree | c3e20703b7123cf06edcd83aa15c91558437817e /gnu/packages | |
parent | da2877237ecd0e1c837758ee5e07ab450c827537 (diff) | |
download | guix-patches-a7d6e1b6a16534a3afdcecf5d45ed3f5ba9bc3c1.tar guix-patches-a7d6e1b6a16534a3afdcecf5d45ed3f5ba9bc3c1.tar.gz |
gnu: r-ldheatmap: Move to (gnu packages bioconductor).
This is a follow-up to commit 0c8bb20b7cbd39537999fce29979a6acaf64e601.
* gnu/packages/cran.scm (r-ldheatmap): Move this from here...
* gnu/packages/bioconductor.scm (r-ldheatmap): ...to here.
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioconductor.scm | 28 | ||||
-rw-r--r-- | gnu/packages/cran.scm | 28 |
2 files changed, 28 insertions, 28 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 55df9bf7d1..f1af34844f 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -9618,6 +9618,34 @@ handling of existing population-level data for the purpose of flexibly defining LD blocks.") (license license:artistic2.0))) +;; This is a CRAN package, but it depends on r-snpstats, which is a +;; Bioconductor package. +(define-public r-ldheatmap + (package + (name "r-ldheatmap") + (version "1.0-4") + (source + (origin + (method url-fetch) + (uri (cran-uri "LDheatmap" version)) + (sha256 + (base32 + "1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7")))) + (properties `((upstream-name . "LDheatmap"))) + (build-system r-build-system) + (propagated-inputs + `(("r-genetics" ,r-genetics) + ("r-rcpp" ,r-rcpp) + ("r-snpstats" ,r-snpstats))) + (home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html") + (synopsis "Graphical display of pairwise linkage disequilibria between SNPs") + (description + "This package provides tools to produce a graphical display, as a heat +map, of measures of pairwise linkage disequilibria between SNPs. Users may +optionally include the physical locations or genetic map distances of each SNP +on the plot.") + (license license:gpl3))) + (define-public r-pathview (package (name "r-pathview") diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index c0926d9fb3..0483af3d6b 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -14718,34 +14718,6 @@ effects. It is applicable to backcrosses, doubled haploids, recombinant inbred lines, F2 intercrosses, and association mapping populations.") (license license:gpl2))) -(define-public r-ldheatmap - (package - (name "r-ldheatmap") - (version "1.0-4") - (source - (origin - (method url-fetch) - (uri (cran-uri "LDheatmap" version)) - (sha256 - (base32 - "1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7")))) - (properties `((upstream-name . "LDheatmap"))) - (build-system r-build-system) - (propagated-inputs - `(("r-genetics" ,r-genetics) - ("r-rcpp" ,r-rcpp) - ("r-snpstats" ,(module-ref - (resolve-interface '(gnu packages bioconductor)) - 'r-snpstats)))) - (home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html") - (synopsis "Graphical display of pairwise linkage disequilibria between SNPs") - (description - "This package provides tools to produce a graphical display, as a heat -map, of measures of pairwise linkage disequilibria between SNPs. Users may -optionally include the physical locations or genetic map distances of each SNP -on the plot.") - (license license:gpl3))) - (define-public r-hwde (package (name "r-hwde") |