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author | Roel Janssen <roel@gnu.org> | 2021-05-26 16:07:17 +0200 |
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committer | Roel Janssen <roel@gnu.org> | 2021-05-26 16:07:17 +0200 |
commit | 4e9bb49688f30724e0459df0457bcdfd783b9b64 (patch) | |
tree | abc51f1b5e432b8bcf4302d126243570bca73458 /gnu/packages | |
parent | 2aa622ca7d82f9093e3dd3b766bbebffa96e904a (diff) | |
download | guix-patches-4e9bb49688f30724e0459df0457bcdfd783b9b64.tar guix-patches-4e9bb49688f30724e0459df0457bcdfd783b9b64.tar.gz |
gnu: Add r-structuralvariantannotation.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioconductor.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 596e80a9f9..8ec7a6d90d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2600,6 +2600,36 @@ purposes. The package also contains legacy support for early single-end, ungapped alignment formats.") (license license:artistic2.0))) +(define-public r-structuralvariantannotation + (package + (name "r-structuralvariantannotation") + (version "1.6.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "StructuralVariantAnnotation" version)) + (sha256 + (base32 + "0ff40703iyf5wk77hbqhphfxnzc2wcshnjhvh66c5l0jvj9z8xvc")))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-dplyr" ,r-dplyr) + ("r-genomicranges" ,r-genomicranges) + ("r-rtracklayer" ,r-rtracklayer) + ("r-stringr" ,r-stringr) + ("r-assertthat" ,r-assertthat) + ("r-variantannotation" ,r-variantannotation))) + (home-page "https://bioconductor.org/packages/StructuralVariantAnnotation/") + (synopsis "R package designed to simplify structural variant analysis") + (description + "This package contains useful helper functions for dealing with structural +variants in VCF format. The packages contains functions for parsing VCFs from +a number of popular callers as well as functions for dealing with breakpoints +involving two separate genomic loci encoded as GRanges objects.") + (license license:gpl3))) + (define-public r-summarizedexperiment (package (name "r-summarizedexperiment") |