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author | Leo Famulari <leo@famulari.name> | 2021-01-25 15:21:09 -0500 |
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committer | Leo Famulari <leo@famulari.name> | 2021-01-25 15:40:55 -0500 |
commit | 68dd78e2e47248b3e1e7ba1807a92a8374b39097 (patch) | |
tree | d38564293f285d688a55b23e8a6424c6b26213b1 /gnu/packages/statistics.scm | |
parent | 8b55544212a90b0276df49596a3d373e5c2e8f5c (diff) | |
parent | 3f0af15131e524891df8c9f013f1be1597fe2d7e (diff) | |
download | guix-patches-68dd78e2e47248b3e1e7ba1807a92a8374b39097.tar guix-patches-68dd78e2e47248b3e1e7ba1807a92a8374b39097.tar.gz |
Merge branch 'master' into staging
Diffstat (limited to 'gnu/packages/statistics.scm')
-rw-r--r-- | gnu/packages/statistics.scm | 155 |
1 files changed, 82 insertions, 73 deletions
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index c45544f52e..77cd629882 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015 Vicente Vera Parra <vicentemvp@gmail.com> ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016, 2017, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> @@ -160,14 +160,14 @@ simulation not wholly unlike BUGS. JAGS was written with three aims in mind: (define-public libxls (package (name "libxls") - (version "1.5.3") + (version "1.6.2") (source (origin (method url-fetch) (uri (string-append "https://github.com/libxls/libxls/releases/download/" "v" version "/libxls-" version ".tar.gz")) (sha256 - (base32 "0rl513wpq5qh7wkmdk4g9c68rzffv3mcbz48p4xyg4969zrx8lnm")))) + (base32 "0wg3ymr43aa1j3scyl9x83b2xgg7wilzpil0dj91a8dzji6w7b2x")))) (build-system gnu-build-system) (home-page "https://github.com/libxls/libxls") (synopsis "Read binary (.xls) Excel spreadsheet files") @@ -522,14 +522,14 @@ code for possible problems.") (define-public r-foreign (package (name "r-foreign") - (version "0.8-80") + (version "0.8-81") (source (origin (method url-fetch) (uri (cran-uri "foreign" version)) (sha256 (base32 - "0wjdi3qn9famsxmpdyyahidaid0yhxlpx4ad9k8vrxhxd6xspasp")))) + "0b4rca1bl8xxna05057hchbwfmgjgx0n140szabpc0raizqzks0s")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/foreign") (synopsis "Read data stored by other statistics software") @@ -586,14 +586,14 @@ also flexible enough to handle most nonstandard requirements.") (define-public r-matrix (package (name "r-matrix") - (version "1.2-18") + (version "1.3-2") (source (origin (method url-fetch) (uri (cran-uri "Matrix" version)) (sha256 (base32 - "06b1rc1vq65b271f2wpzhqkvhng8hwwnvjflzxkng50i52603zzp")))) + "0ccmmfd0lbvrhzjzr28k4yfawiywa1m4ics34zyi3rqq23csa2wm")))) (properties `((upstream-name . "Matrix"))) (build-system r-build-system) (propagated-inputs @@ -608,13 +608,13 @@ and operations on them using LAPACK and SuiteSparse.") (define-public r-nlme (package (name "r-nlme") - (version "3.1-150") + (version "3.1-151") (source (origin (method url-fetch) (uri (cran-uri "nlme" version)) (sha256 - (base32 "18qmbzrmrham8hbdlzsca7w46c5iqighx1ymzggll5s86c4s7kvr")))) + (base32 "1jl6x0glpyszy6bkbcggm3f10jl4kldhs5q561k85xcbssx2dim2")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -1112,13 +1112,13 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.3.2") + (version "3.3.3") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "0wsib5qpzn4d0w1ss3x158xmrawkms8vvsfvr3mh40pvd8g2ibad")))) + (base32 "1k136k1sr6dq1xvx6gs6gzji6hbnnwnsb5qivsxrblfv90irxhj5")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -1175,14 +1175,14 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.2.2") + (version "0.2.3") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "08njzin0c6biw62j5w30r9j85vr1m2cg4hmv5d76nym860yrlqjf")))) + "1p3ip0qwpg8f63jfx0b8vbac6l20ddid8xvxzkfi6i858pybnawp")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -1268,14 +1268,16 @@ evaluation (NSE) in R.") (define-public r-dbi (package (name "r-dbi") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "DBI" version)) (sha256 (base32 - "1r03j9rdcxb9bhxk40dkmy10ikz4yzsxhy3f9k9ix3x577xbfvd9")))) + "0i0kfyg43nryyka2bjlgz4x75w965224qp36wz1hl7a2lswb6ajp")))) (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/rstats-db/DBI") (synopsis "R database interface") (description @@ -1288,13 +1290,13 @@ R/DBMS implementations.") (define-public r-bh (package (name "r-bh") - (version "1.72.0-3") + (version "1.75.0-0") (source (origin (method url-fetch) (uri (cran-uri "BH" version)) (sha256 (base32 - "1ay8vb6i730lipg8b8g3893vqglhw2kqpc29lwdrxdkb66iw33l8")))) + "0nkgvl5qjs2a7jv0ncsrl4fqaw2pdaj7a1pncdv6kp874sci0k5f")))) (build-system r-build-system) (home-page "https://github.com/eddelbuettel/bh") (synopsis "R package providing subset of Boost headers") @@ -1583,13 +1585,13 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "3.0.0") + (version "3.0.1") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "069ixg03r1s85my9dbc9c1261i4gz8fc1mv67whi2l6kpbp4cjzh")))) + "1l1s4jgmgbsf711ma5i58ssgkz98an7hijcxvwfz314nf5fc8zr9")))) (build-system r-build-system) (propagated-inputs `(("r-brio" ,r-brio) @@ -1645,13 +1647,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "0.4.9") + (version "0.4.10") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "0qix6jigz3qqjx151fpv1k5hq2miqyakvm3jql2qqsyr9d1028yr")))) + "0ximv89f6zymnwms121k1jfvvflrdm3pmmf5xyvz56f1qiq04lq7")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1663,14 +1665,14 @@ like tidy evaluation.") (define-public r-tibble (package (name "r-tibble") - (version "3.0.4") + (version "3.0.5") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "189yyl27mnswk1z51xw6gj3lyxgy6m332jq8xyvwskff57w2w692")))) + "142i34h53b8w8jkh3l8y3xsqfvvgp7ybfbv830bjky7cymxjvj8w")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -1695,13 +1697,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "0jnw18nw20gw3jvq3kvkf9mqn6b7mvgmys8g6350k5jwpygk5cbw")))) + "0hc4wnx70mrsb3s0k5ywffhnky3hznlrvvs22m6ls5crgvcak898")))) (build-system r-build-system) (propagated-inputs `(("r-ellipsis" ,r-ellipsis) @@ -1850,13 +1852,13 @@ times.") (define-public r-data-table (package (name "r-data-table") - (version "1.13.4") + (version "1.13.6") (source (origin (method url-fetch) (uri (cran-uri "data.table" version)) (sha256 (base32 - "0jrvl5b8qbzmiymhjgbj4l2nai87ijvv33aw24xvzjx0rkys9dv1")))) + "16ryrpzl86krww5nx7a97i09y5xqld4lw4d9pa1vzjl99x6ds36m")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) @@ -2125,14 +2127,14 @@ limited to R.") (define-public r-backports (package (name "r-backports") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "backports" version)) (sha256 (base32 - "1xgp4i6yxkh2viia96hlf004hn47yrhfivwf8wv63xdldqa8yj9v")))) + "1mf2nz78l97lbxyagv55bcxrny51ds8g28h307cfa1g3ayylp0x2")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/backports") (synopsis "Reimplementations of functions introduced since R 3.0.0") @@ -2409,13 +2411,13 @@ functions make it easy to control additional request components.") (define-public r-git2r (package (name "r-git2r") - (version "0.27.1") + (version "0.28.0") (source (origin (method url-fetch) (uri (cran-uri "git2r" version)) (sha256 (base32 - "1h1vfzym6hi1fqs9p5z5v0f4xldggr425frw8k6dsidah3qhg4h9")))) + "1wjmbs9cmm16pm3g0rmqp7cxxyh95m5lgx4fx5bpgj6j466i8vff")))) (build-system r-build-system) (inputs `(("libgit2" ,libgit2) @@ -2494,13 +2496,13 @@ tools to simplify the devolpment of R packages.") (define-public r-withr (package (name "r-withr") - (version "2.3.0") + (version "2.4.0") (source (origin (method url-fetch) (uri (cran-uri "withr" version)) (sha256 (base32 - "1837vjp35npjrnis1im5xrwj1swpgnms00gkjiz7296l8yckrh1c")))) + "1y0l6zbpg0wix60r58yk452aqvx4rd0bk7zw9b90lzniwk3wvr7d")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -2515,18 +2517,20 @@ were originally a part of the r-devtools package.") (define-public r-hms (package (name "r-hms") - (version "0.5.3") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "hms" version)) (sha256 (base32 - "1baki0qw5ijgiflvsdvqj3apg4yanf12vx14kwbqdzk5rz46fasf")))) + "0qn9lvpkqrpxck88nf0zbff43vd7d6s1ibg58qfr3w14sw1yj14p")))) (build-system r-build-system) (propagated-inputs - `(("r-rlang" ,r-rlang) + `(("r-ellipsis" ,r-ellipsis) + ("r-lifecycle" ,r-lifecycle) ("r-pkgconfig" ,r-pkgconfig) + ("r-rlang" ,r-rlang) ("r-vctrs" ,r-vctrs))) (home-page "https://github.com/rstats-db/hms") (synopsis "Pretty time of day") @@ -2630,13 +2634,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.10.1.2.0") + (version "0.10.1.2.2") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0nzi6plhdijx3khavmywzw9wbch0hj8kygphw35wdlslm4cnqcj1")))) + "0sfhk4mh39ab1y7pmlnijg4w65yz7pfsyjlqy931zdpjzh1kfciq")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -2676,13 +2680,13 @@ vectors.") (define-public r-catools (package (name "r-catools") - (version "1.18.0") + (version "1.18.1") (source (origin (method url-fetch) (uri (cran-uri "caTools" version)) (sha256 (base32 - "0y1kgyiy322yhb0phzwvf2zgjz9awp13lhzhk9v1ddg88656jhq3")))) + "1yf98x2gaf84y9m32xrg84g384zlfwsdw7wvywdljpgdpvzs9szz")))) (properties `((upstream-name . "caTools"))) (build-system r-build-system) (propagated-inputs @@ -2722,13 +2726,13 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "2.5") + (version "2.6") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 "0vmd1kykd4p1nwqbvra34sld5brac0wxb1zmav4wxj05shy67bd5")))) + (base32 "1c7nrpnv2v43msv7nia90rjh6s5x9m5wlb3mpiwy04fyfb29krz6")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -2837,13 +2841,13 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.2.1") + (version "2.2.2") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "0lynli9144dzb9vhxssba20v7z5h2nirawpvvy8ykv4n3ir7qlsl")))) + "0wx8awxfd4q4mb5dk261rf7zd7y2lcm121fplay0vxl697yym719")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs @@ -3034,14 +3038,14 @@ statements.") (define-public r-segmented (package (name "r-segmented") - (version "1.3-0") + (version "1.3-1") (source (origin (method url-fetch) (uri (cran-uri "segmented" version)) (sha256 (base32 - "1a9nnlf8j8j4ik34z19x187s8ki7pv1aayr344jrpn3h6m8fk3x5")))) + "0g8l1i31zfqamvwc5j537k3ld6dr5z81p84grdlqq41gywmyidmr")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/segmented") (synopsis "Regression models with breakpoints estimation") @@ -3194,13 +3198,13 @@ using the multicore functionality of the parallel package.") (define-public r-dt (package (name "r-dt") - (version "0.16") + (version "0.17") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "0in4d34nxb4pk2jygj0a21cqf0k0m4dhm4rjv68bnkp5kmmz6kbk")))) + "0mpvyfmi2viyhdqx11hznd7dl0q6kxrdmppjsmm2pk0x8a904hz3")))) (properties `((upstream-name . "DT"))) (build-system r-build-system) @@ -3273,13 +3277,13 @@ analysis of large sparse or dense matrices.") (define-public r-glmnet (package (name "r-glmnet") - (version "4.0-2") + (version "4.1") (source (origin (method url-fetch) (uri (cran-uri "glmnet" version)) (sha256 - (base32 "0qdswxvdwjcnw0by15p9yfzw8laq4f2j0ivpma6q8c5zywldpxxc")))) + (base32 "1js01qnznm20h4pslaw1ragxhrzk0w4nw7r6ryg7i27l344za2lg")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran) @@ -3779,14 +3783,14 @@ and tidyr provides no margins or aggregation.") (define-public r-hexbin (package (name "r-hexbin") - (version "1.28.1") + (version "1.28.2") (source (origin (method url-fetch) (uri (cran-uri "hexbin" version)) (sha256 (base32 - "1ry6jm3lqz3mj0s5rzbs6mpkz2hxpnvbw8c1vwc4pj7b173r5l22")))) + "0bbhs5pwxh474w62sq6gqvih7habancxng9wd4f2rgn6lv9zhhb2")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -3827,13 +3831,13 @@ features present in other programming languages.") (define-public r-plotly (package (name "r-plotly") - (version "4.9.2.1") + (version "4.9.3") (source (origin (method url-fetch) (uri (cran-uri "plotly" version)) (sha256 (base32 - "1f0x83a2s7200iqi6gpngijks06fcvcbm6701d5r5rxpb8rawppl")))) + "0801i2q7sw62x734d58h9p2fwpi1hirqj73gsg18pqkdv4b1lkfl")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -3842,7 +3846,6 @@ features present in other programming languages.") ("r-data-table" ,r-data-table) ("r-dplyr" ,r-dplyr) ("r-ggplot2" ,r-ggplot2) - ("r-hexbin" ,r-hexbin) ("r-htmltools" ,r-htmltools) ("r-htmlwidgets" ,r-htmlwidgets) ("r-httr" ,r-httr) @@ -3856,6 +3859,7 @@ features present in other programming languages.") ("r-scales" ,r-scales) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) + ("r-vctrs" ,r-vctrs) ("r-viridislite" ,r-viridislite))) (home-page "https://plot.ly/r") (synopsis "Create interactive web graphics") @@ -4137,14 +4141,14 @@ existing packages provide.") (define-public r-sfsmisc (package (name "r-sfsmisc") - (version "1.1-7") + (version "1.1-8") (source (origin (method url-fetch) (uri (cran-uri "sfsmisc" version)) (sha256 (base32 - "12g6m8sf17q3qmm133nm4fa296w5n5d9ly3fvb2nvc0w4llkif3l")))) + "198zpkz1gvw954ym8669svrk81yb49j6fyk5i6a7dw07z3snlmdn")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/sfsmisc") (synopsis "Utilities from \"Seminar fuer Statistik\" ETH Zurich") @@ -4532,14 +4536,14 @@ Farebrother's algorithm or Liu et al.'s algorithm.") (define-public r-cowplot (package (name "r-cowplot") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "cowplot" version)) (sha256 (base32 - "04d5pg4xi9nhgcbam71b5mp3q1g804ng864v90add1kddfyl3f9h")))) + "0j7d5vhzdxn1blrsfafx5z8lhq122rp8230hp9czrpsnnhjydp67")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -4789,14 +4793,14 @@ can be efficiently implemented directly in the R language.") (define-public r-robustbase (package (name "r-robustbase") - (version "0.93-6") + (version "0.93-7") (source (origin (method url-fetch) (uri (cran-uri "robustbase" version)) (sha256 (base32 - "1cr478xi4n9jwsdpbq182a7ig47rpb413q28dz6d1am08sk6657a")))) + "0mh9d114p3jdrjf8yn4dx5ff41niz5wn411y0ckjcpnazp8d44c9")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -4969,13 +4973,13 @@ groupings.") (define-public r-vgam (package (name "r-vgam") - (version "1.1-4") + (version "1.1-5") (source (origin (method url-fetch) (uri (cran-uri "VGAM" version)) (sha256 - (base32 "1iwrpyhz3khgw904zxz3pn7d61zvkd5m22gimzk57f8jjplxh1zm")))) + (base32 "1fx123h4x5awzshv0m4jqbbllrdjfpslb2i8gl9phm1y1wahn69h")))) (properties `((upstream-name . "VGAM"))) (build-system r-build-system) (native-inputs @@ -5036,14 +5040,14 @@ based on an interface to Fortran implementations by M. J. D. Powell.") (define-public r-rcppeigen (package (name "r-rcppeigen") - (version "0.3.3.7.0") + (version "0.3.3.9.1") (source (origin (method url-fetch) (uri (cran-uri "RcppEigen" version)) (sha256 (base32 - "1b78qcjim0n9klgkr82n794d6bj9r9f33g0kcsszsns2hir65sk2")))) + "0qp9gypar280lm84pc8w0fxw4jgwqygwi3qnl5sl52kpkcj8c14a")))) (properties `((upstream-name . "RcppEigen"))) (build-system r-build-system) (propagated-inputs @@ -5106,13 +5110,13 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.75") + (version "5.82") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 - (base32 "05mb1qmwah5sdgg2z7m36lqkh479phvb1cx4sjnv1ykvmi9alxv5")))) + (base32 "01wcai04asr0wcfm001whihwbbx3b3r1m65ngknj82nh6hg4xhza")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -5196,20 +5200,25 @@ C++ library for numerical linear algebra and RcppEigen glue.") (define-public r-pbkrtest (package (name "r-pbkrtest") - (version "0.4-8.6") + (version "0.5-0.1") (source (origin (method url-fetch) (uri (cran-uri "pbkrtest" version)) (sha256 (base32 - "0s5xhhrhv5i9680lw6af9lj2x4jc3fygmzzk0jjpxnb8g4b3p1jz")))) + "0sgl8r74cknmp8lnq5jvc1w181274ylgk6w4pxf4mzkfii42argm")))) (build-system r-build-system) (propagated-inputs - `(("r-lme4" ,r-lme4) + `(("r-broom" ,r-broom) + ("r-dplyr" ,r-dplyr) + ("r-lme4" ,r-lme4) ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) - ("r-matrix" ,r-matrix))) + ("r-matrix" ,r-matrix) + ("r-numderiv" ,r-numderiv))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "http://people.math.aau.dk/~sorenh/software/pbkrtest/") (synopsis "Methods for linear mixed model comparison") (description @@ -5526,14 +5535,14 @@ easy and fun.") (define-public r-fdrtool (package (name "r-fdrtool") - (version "1.2.15") + (version "1.2.16") (source (origin (method url-fetch) (uri (cran-uri "fdrtool" version)) (sha256 (base32 - "1h46frlk7d9f4qx0bg6p55nrm9wwwz2sv6d1nz7061wdfsm69yb5")))) + "1aap4k1l3a9m43374xq688mqnzkgqx8l021li262r3h1xr4adpp7")))) (build-system r-build-system) (home-page "http://strimmerlab.org/software/fdrtool/") (synopsis "Estimation of false discovery rates and higher criticism") |