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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-06-01 12:18:00 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-06-01 12:19:48 +0200 |
| commit | 6e54ce9ca9b172189ab46eb14147304ff9cfa35b (patch) | |
| tree | 145959f536f8e17975f4ef6f7d128da87cf01efe /gnu/packages/patches | |
| parent | 75af73e1b7ac58770122d8831faa3a8158638bb0 (diff) | |
| download | guix-patches-6e54ce9ca9b172189ab46eb14147304ff9cfa35b.tar guix-patches-6e54ce9ca9b172189ab46eb14147304ff9cfa35b.tar.gz | |
gnu: pigx-chipseq: Update to 0.1.0.
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.1.0.
[source]: Remove patch.
[arguments]: Remove 'autoreconf phase.
[native-inputs]: Remove autoconf and automake.
* gnu/packages/patches/pigx-chipseq-no-citeproc.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
Diffstat (limited to 'gnu/packages/patches')
| -rw-r--r-- | gnu/packages/patches/pigx-chipseq-no-citeproc.patch | 33 |
1 files changed, 0 insertions, 33 deletions
diff --git a/gnu/packages/patches/pigx-chipseq-no-citeproc.patch b/gnu/packages/patches/pigx-chipseq-no-citeproc.patch deleted file mode 100644 index b01820f110..0000000000 --- a/gnu/packages/patches/pigx-chipseq-no-citeproc.patch +++ /dev/null @@ -1,33 +0,0 @@ -diff -Naur pigx_chipseq-0.0.53/configure.ac pigx_chipseq-0.0.53.patched/configure.ac ---- pigx_chipseq-0.0.53/configure.ac 2021-09-28 11:14:12.000000000 +0200 -+++ pigx_chipseq-0.0.53.patched/configure.ac 2021-10-07 14:48:53.034054327 +0200 -@@ -52,7 +52,6 @@ - find_or_override_prog([MACS2], [macs2]) - find_or_override_prog([SNAKEMAKE], [snakemake]) - find_or_override_prog([PANDOC], [pandoc]) --find_or_override_prog([PANDOC_CITEPROC], [pandoc-citeproc]) - find_or_override_prog([FASTQC], [fastqc]) - find_or_override_prog([BOWTIE2], [bowtie2]) - find_or_override_prog([BOWTIE2_BUILD], [bowtie2-build]) -diff -Naur pigx_chipseq-0.0.53/Makefile.in pigx_chipseq-0.0.53.patched/Makefile.in ---- pigx_chipseq-0.0.53/Makefile.in 2021-09-28 11:55:05.000000000 +0200 -+++ pigx_chipseq-0.0.53.patched/Makefile.in 2021-10-07 14:48:37.195577143 +0200 -@@ -407,7 +407,6 @@ - PACKAGE_URL = @PACKAGE_URL@ - PACKAGE_VERSION = @PACKAGE_VERSION@ - PANDOC = @PANDOC@ --PANDOC_CITEPROC = @PANDOC_CITEPROC@ - PATH_SEPARATOR = @PATH_SEPARATOR@ - PERL = @PERL@ - PYTHON = @PYTHON@ -diff -Naur pigx_chipseq-0.0.53/pigx-common/common/pigx-runner.in pigx_chipseq-0.0.53.patched/pigx-common/common/pigx-runner.in ---- pigx_chipseq-0.0.53/pigx-common/common/pigx-runner.in 2021-09-27 18:16:42.000000000 +0200 -+++ pigx_chipseq-0.0.53.patched/pigx-common/common/pigx-runner.in 2021-10-07 14:48:44.200788218 +0200 -@@ -379,7 +379,6 @@ - if path.exists(bin): shutil.rmtree(bin) - os.makedirs(bin, exist_ok=True) - os.symlink('@PANDOC@', path.join(bin, "pandoc")) -- os.symlink('@PANDOC_CITEPROC@', path.join(bin, "pandoc-citeproc")) - os.symlink('@RSCRIPT@', path.join(bin, "Rscript")) - os.environ['PATH'] = path.abspath(bin) + ":" + os.environ['PATH'] - os.environ['PIGX_PATH'] = path.abspath(bin) + ":" + os.environ['PATH'] |