diff options
author | Ludovic Courtès <ludo@gnu.org> | 2022-04-28 16:24:46 +0200 |
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committer | Ludovic Courtès <ludo@gnu.org> | 2022-04-28 16:24:46 +0200 |
commit | 284fa7264963acc5d114ef5d54c347126b1654ba (patch) | |
tree | 3e5360fcc81b6d0dce76a65aca60cf8528f2931f /gnu/packages/cran.scm | |
parent | 12c9da35389dfba86ae0d863132a6b2c4374205a (diff) | |
parent | 882cacc1bb5be0df334dd7ce55b385a3a1678728 (diff) | |
download | guix-patches-284fa7264963acc5d114ef5d54c347126b1654ba.tar guix-patches-284fa7264963acc5d114ef5d54c347126b1654ba.tar.gz |
Merge branch 'master' into staging
Diffstat (limited to 'gnu/packages/cran.scm')
-rw-r--r-- | gnu/packages/cran.scm | 714 |
1 files changed, 469 insertions, 245 deletions
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 23645faa8a..1609682b8d 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -112,6 +112,29 @@ #:use-module (gnu packages xml) #:use-module (gnu packages xorg)) +(define-public r-aod + (package + (name "r-aod") + (version "1.3.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "aod" version)) + (sha256 + (base32 "0p2i536s0aa54rah1l465g77k2ldn6jm6s25y9vc06mk29xvx1cv")))) + (properties `((upstream-name . "aod"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=aod") + (synopsis "Analysis of overdispersed data") + (description + "This package provides a set of functions to analyze overdispersed counts +or proportions. Most of the methods are already available elsewhere but are +scattered in different packages. The proposed functions should be considered +as complements to more sophisticated methods such as @dfn{generalized +estimating equations} (GEE) or @dfn{generalized linear mixed effect +models} (GLMM).") + (license license:gpl2+))) + (define-public r-brio (package (name "r-brio") @@ -207,14 +230,14 @@ etc.") (define-public r-datawizard (package (name "r-datawizard") - (version "0.3.0") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "datawizard" version)) (sha256 (base32 - "1jmrkfymh66d0n4256hamvrbqipfl3bl05q618z4flmq2byifibs")))) + "1j26xv1zm7qwp80gy6vlysq3zxdj9r8ivi54b1d6s0ckqkww6gja")))) (properties `((upstream-name . "datawizard"))) (build-system r-build-system) (propagated-inputs @@ -229,6 +252,35 @@ clean, transform, and prepare your data for analysis. It also forms the data wrangling backend for the packages in the @code{easystats} ecosystem.") (license license:gpl3))) +(define-public r-dbscan + (package + (name "r-dbscan") + (version "1.1-10") + (source + (origin + (method url-fetch) + (uri (cran-uri "dbscan" version)) + (sha256 + (base32 "1h8x1v9kk5zmw5qd575cyr16yz8l226lsaq71n079l4i8crcrzg1")))) + (properties `((upstream-name . "dbscan"))) + (build-system r-build-system) + (propagated-inputs (list r-rcpp)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/mhahsler/dbscan") + (synopsis "Density-based spatial clustering of applications with noise") + (description + "This package provides a fast reimplementation of several density-based +algorithms of the DBSCAN family. It includes the clustering algorithms DBSCAN +(density-based spatial clustering of applications with noise) and +@dfn{hierarchical DBSCAN} (HDBSCAN), the ordering algorithm @dfn{ordering +points to identify the clustering structure} (OPTICS), shared nearest neighbor +clustering, and the outlier detection algorithms @dfn{local outlier +factor} (LOF) and @dfn{global-local outlier score from hierarchies} (GLOSH). +The implementations use the kd-tree data structure for faster k-nearest +neighbor search. An R interface to fast kNN and fixed-radius NN search is +also provided.") + (license license:gpl2+))) + (define-public r-diffobj (package (name "r-diffobj") @@ -325,6 +377,34 @@ Distance (EMD).") (description "This package lets you manage Google Drive files from R.") (license license:expat))) +(define-public r-guix-install + (package + (name "r-guix-install") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "guix.install" version)) + (sha256 + (base32 "0s3wb5781yc43c9zwrn7i87zcbrlx7xr0ms0v9hvgs7qsv02id9j")))) + (properties `((upstream-name . "guix.install"))) + (build-system r-build-system) + (propagated-inputs (list r-runit)) + (home-page "https://github.com/BIMSBbioinfo/guix.install") + (synopsis "Install R packages with GNU Guix") + (description + "This R package provides a single procedure @code{guix.install()}, which +allows users to install R packages via Guix right from within their running R +session. If the requested R package does not exist in Guix at this time, the +package and all its missing dependencies will be imported recursively and the +generated package definitions will be written to @file{~/.Rguix/packages.scm}. +This record of imported packages can be used later to reproduce the +environment, and to add the packages in question to a proper Guix channel (or +Guix itself). @code{guix.install()} not only supports installing packages +from CRAN, but also from Bioconductor or even arbitrary git or mercurial +repositories, replacing the need for installation via @code{devtools}.") + (license license:gpl3+))) + (define-public r-ids (package (name "r-ids") @@ -387,14 +467,14 @@ can read and write both the metadata and the cell data in a Sheet.") (define-public r-waldo (package (name "r-waldo") - (version "0.3.1") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "waldo" version)) (sha256 (base32 - "16q1xjbl9g04l1r1x3nid9hmz1sa35q6j33bigdzh4y4zcd8qb7c")))) + "1aky28rn70l24s0sygl36267cf7hjzhchagsz26abfxwr7p8kvjp")))) (properties `((upstream-name . "waldo"))) (build-system r-build-system) (propagated-inputs @@ -659,6 +739,26 @@ size and can be easily tested locally before being sent to a remote.") the system clipboards.") (license license:gpl3))) +(define-public r-dlm + (package + (name "r-dlm") + (version "1.1-5") + (source + (origin + (method url-fetch) + (uri (cran-uri "dlm" version)) + (sha256 + (base32 "1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r")))) + (properties `((upstream-name . "dlm"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=dlm") + (synopsis "Bayesian and Likelihood Analysis of Dynamic Linear Models") + (description + "This package provides routines for Maximum likelihood, Kalman filtering +and smoothing, and Bayesian analysis of Normal linear State Space models, also +known as Dynamic Linear Models.") + (license license:gpl2+))) + (define-public r-zoo (package (name "r-zoo") @@ -783,14 +883,14 @@ variables.") (define-public r-ggpp (package (name "r-ggpp") - (version "0.4.3") + (version "0.4.4") (source (origin (method url-fetch) (uri (cran-uri "ggpp" version)) (sha256 (base32 - "175mk5zcnhwr8hvs1567x0k0vmq7g2qnq250pnxlwnv1wpmvrqhz")))) + "0wcaczxjav5yg8h2197cf288mqk13p3iq675q0x0di9g8lnblvk1")))) (properties `((upstream-name . "ggpp"))) (build-system r-build-system) (propagated-inputs @@ -874,13 +974,13 @@ axis} (SMA), and @dfn{ranged major axis} (RMA).") (define-public r-ggpmisc (package (name "r-ggpmisc") - (version "0.4.5") + (version "0.4.6") (source (origin (method url-fetch) (uri (cran-uri "ggpmisc" version)) (sha256 (base32 - "036y3zhl9ndj5wlqy2nkp95vi7pjfpvf63ndsigramzad0fz0c98")))) + "1iq39rx4nj1lf37hnj4df0c7gbk9374d0mzcnhdr7aqpxaxgs3ys")))) (build-system r-build-system) (propagated-inputs (list r-dplyr @@ -1074,6 +1174,31 @@ consistent fashion. It seeks to combine functionality from lower level functions which can speed up workflow.") (license license:gpl2))) +(define-public r-paralleldist + (package + (name "r-paralleldist") + (version "0.2.6") + (source + (origin + (method url-fetch) + (uri (cran-uri "parallelDist" version)) + (sha256 + (base32 "01ly4hxwa64a0ya5gla8rvv72s9mcknsfznivjkh937pbjwb7iih")))) + (properties `((upstream-name . "parallelDist"))) + (build-system r-build-system) + (propagated-inputs (list r-rcpp r-rcpparmadillo r-rcppparallel)) + (home-page "https://github.com/alexeckert/parallelDist") + (synopsis "Parallel Distance Matrix Computation using multiple threads") + (description + "This package provides a fast parallelized alternative to R's native +@code{dist} function to calculate distance matrices for continuous, binary, +and multi-dimensional input matrices, which supports a broad variety of +predefined distance functions from other R packages, as well as user- defined +functions written in C++. For ease of use, the @code{parDist} function +extends the signature of the @code{dist} function and uses the same parameter +naming conventions as distance methods of existing R packages.") + (license license:gpl2+))) + (define-public r-pheatmap (package (name "r-pheatmap") @@ -1298,13 +1423,13 @@ objects.") (define-public r-mboost (package (name "r-mboost") - (version "2.9-5") + (version "2.9-6") (source (origin (method url-fetch) (uri (cran-uri "mboost" version)) (sha256 (base32 - "0yg07fdd1sbjfhhxn1dqgph2vzqyq7l52cdk5iq2a2zy1vh176yg")))) + "1gvcq1y9prpgxw5kxa20l31p384gksfx0pn7gf29jbl3cknqiyix")))) (build-system r-build-system) (propagated-inputs (list r-lattice @@ -1676,17 +1801,19 @@ mixture models.") (define-public r-readxl (package (name "r-readxl") - (version "1.3.1") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "readxl" version)) (sha256 (base32 - "15mambxr8c7k2ikdfsl1w3vxvm54dsnk0cl1qvks6iig7rql3d14")))) + "1xwi4k5si48hwkgfc59icfmp9dzlvfri59k5fsgn96zp9713k4mb")))) (build-system r-build-system) (propagated-inputs - (list r-cellranger r-progress r-rcpp r-tibble)) + (list r-cellranger r-cpp11 r-progress r-tibble)) + (native-inputs + (list r-knitr)) (home-page "https://readxl.tidyverse.org") (synopsis "Read Excel files") (description @@ -1758,13 +1885,13 @@ into a pipeline of data manipulation and visualisation.") (define-public r-hmm (package (name "r-hmm") - (version "1.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "HMM" version)) (sha256 (base32 - "0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw")))) + "03b548bnwqpnd7zypb4gvy9chyi5li2hp99a9vrh4qszxg2ihas7")))) (properties `((upstream-name . "HMM"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/HMM/") @@ -2036,14 +2163,14 @@ callback or connection interfaces.") (define-public r-hwriter (package (name "r-hwriter") - (version "1.3.2") + (version "1.3.2.1") (source (origin (method url-fetch) (uri (cran-uri "hwriter" version)) (sha256 (base32 - "0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb")))) + "1wxnv8h9cs65m3z01dpnnkgn2cpwfsck70g1jz9nbkr7mdaa4bzd")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/hwriter") (synopsis "Output R objects in HTML format") @@ -2212,14 +2339,14 @@ jQuery.") (define-public r-sass (package (name "r-sass") - (version "0.4.0") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "sass" version)) (sha256 (base32 - "0axw358bbk3vxsqg3wq0bz3xigasa6af8fxvi2ga8hli4cawl1kx")))) + "1fq8wqnxmx10lg0dh4qzmxdkhd22fjh8vhassapxb1chsimwn3w5")))) (properties `((upstream-name . "sass"))) (build-system r-build-system) (propagated-inputs @@ -2234,6 +2361,41 @@ generate dynamic style sheets. The package uses the Sass CSS extension language, which is stable, powerful, and CSS compatible.") (license license:expat))) +(define-public r-saver + (package + (name "r-saver") + (version "1.1.2") + (source (origin + (method url-fetch) + (uri (cran-uri "SAVER" version)) + (sha256 + (base32 + "1s1kw8idkaj7j90fw4qn9k0wd4vz0sblsk06ry6lm4afcar0p158")))) + (properties `((upstream-name . "SAVER"))) + (build-system r-build-system) + (propagated-inputs + (list r-doparallel + r-foreach + r-glmnet + r-iterators + r-matrix)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/mohuangx/SAVER") + (synopsis + "Recovery of gene expression profile in noisy and sparse scRNA-seq data") + (description + "This package is an implementation of a regularized regression prediction +and empirical Bayes method to recover the true gene expression profile in noisy +and sparse single-cell RNA-seq data. In @dfn{single-cell RNA sequencing} +(scRNA-seq) studies, only a small fraction of the transcripts present in each +cell are sequenced. This leads to unreliable quantification of genes with low +or moderate expression, which hinders downstream analysis. This package +@dfn{single-cell analysis via expression recovery} (SAVER) implements an +expression recovery method for unique molecule index (UMI)-based scRNA-seq +data that borrows information across genes and cells to provide accurate +expression estimates for all genes.") + (license license:gpl2))) + ;; This package includes minified JavaScript files. When upgrading please ;; check that there are no new minified JavaScript files. (define-public r-bslib @@ -2821,6 +2983,31 @@ distributions, and a variety of utility functions.") ;; Either version of the GPL. (license (list license:gpl2 license:gpl3)))) +(define-public r-homologene + (package + (name "r-homologene") + (version "1.4.68.19.3.27") + (source + (origin + (method url-fetch) + (uri (cran-uri "homologene" version)) + (sha256 + (base32 "0d7wxisk0vqk1n165v1i19bc02zv78h5r5d3jqai5y6nkmwn01sh")))) + (properties `((upstream-name . "homologene"))) + (build-system r-build-system) + (propagated-inputs + (list r-dplyr r-magrittr r-purrr r-r-utils r-readr)) + (home-page "https://github.com/oganm/homologene") + (synopsis "Quick access to homologene and gene annotation updates") + (description + "This package provides a wrapper for the homologene database by the +National Center for Biotechnology Information (NCBI). It allows searching for +gene homologs across species. The package also includes an updated version of +the homologene database where gene identifiers and symbols are replaced with +their latest (at the time of submission) version and functions to fetch latest +annotation data to keep updated.") + (license license:expat))) + (define-public r-ggtern (package (name "r-ggtern") @@ -3573,13 +3760,13 @@ value for each cluster in a dendrogram.") (define-public r-rcpp (package (name "r-rcpp") - (version "1.0.8.2") + (version "1.0.8.3") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "01bvqlbg8qkc9z3gasz1ga5dwlpilknb05ikj79a055718djxgif")))) + (base32 "1gzqfn1xjawzig30ama3rldykqpcn6bd8sg684mrfvpmv96bi9cx")))) (build-system r-build-system) (home-page "http://www.rcpp.org") (synopsis "Seamless R and C++ integration") @@ -3597,14 +3784,14 @@ and Francois (2011, JSS), and the book by Eddelbuettel (2013, Springer); see (define-public r-rcppthread (package (name "r-rcppthread") - (version "2.1.2") + (version "2.1.3") (source (origin (method url-fetch) (uri (cran-uri "RcppThread" version)) (sha256 (base32 - "0a8767q4p76rfamss1w2vnx4h1229nmwymp1q63li2q5b87wipqp")))) + "0iprpidf7q1wlrgr9dwiikb6apqk80pyjcyni56k64nl7lrkszhj")))) (properties `((upstream-name . "RcppThread"))) (build-system r-build-system) (home-page @@ -3699,14 +3886,14 @@ bindings that call a C++ function.") (define-public r-auc (package (name "r-auc") - (version "0.3.0") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "AUC" version)) (sha256 (base32 - "0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7")))) + "07xf47kypqbsg2mixmq6mnh4s89aqan9bgl6kfv6lbx8ajv2asw3")))) (properties `((upstream-name . "AUC"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/AUC") @@ -4038,13 +4225,13 @@ curve to a data matrix in arbitrary dimensions.") (define-public r-restrserve (package (name "r-restrserve") - (version "0.4.1") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "RestRserve" version)) (sha256 - (base32 "1486hrzj5q5w4nbrsbqlv7vv20ly01y90qc2vygl5syzwvyjd422")))) + (base32 "0qb1x13n2sm0lg52x3289jsln3gw9rawfs1z2372pvr9ydpjsfqb")))) (build-system r-build-system) (propagated-inputs (list r-checkmate @@ -4378,14 +4565,14 @@ or excesses over a high threshold.") (define-public r-lmtest (package (name "r-lmtest") - (version "0.9-39") + (version "0.9-40") (source (origin (method url-fetch) (uri (cran-uri "lmtest" version)) (sha256 (base32 - "126l0y7j2iy6g1w4zii1qkfcjq6wrnc3w2li0bz376smpryddy3i")))) + "15yr2kx08wy085bnziqmj1p6hf9mg3qp2a8465jk2df6di6hsh34")))) (build-system r-build-system) (propagated-inputs (list r-zoo)) @@ -5035,14 +5222,14 @@ Delaunay triangulation and convex hull computation.") (define-public r-ddalpha (package (name "r-ddalpha") - (version "1.3.12") + (version "1.3.13") (source (origin (method url-fetch) (uri (cran-uri "ddalpha" version)) (sha256 (base32 - "07q6yrs1cqplbwv4wyvq26w4aj04jyajk4qh7vixm6i515cipsil")))) + "1bjfgb3lbzhjb5wx9hzp90jppq7vnj59bmd2n9ymi8sh1570m9p4")))) (build-system r-build-system) (propagated-inputs (list r-bh @@ -5140,14 +5327,14 @@ problems as well as resampling based estimators of prediction error.") (define-public r-psych (package (name "r-psych") - (version "2.1.9") + (version "2.2.3") (source (origin (method url-fetch) (uri (cran-uri "psych" version)) (sha256 (base32 - "032h33i2qlwsw2iq82nri5y8hs7d593w40aghcvnibpi2wxf0x8l")))) + "0fi7gcaxcb1mdyfpgjm03sxz3qgp1s0hnrgx8pyswni5skb903pn")))) (build-system r-build-system) (propagated-inputs (list r-lattice r-mnormt r-nlme)) @@ -6094,13 +6281,13 @@ constants, and control debugging of packages via environment variables.") (define-public r-processx (package (name "r-processx") - (version "3.5.2") + (version "3.5.3") (source (origin (method url-fetch) (uri (cran-uri "processx" version)) (sha256 - (base32 "0azw8sx6nv6pp8m8jrwq01b9na2swrnznn7dwrhn07268w82svzd")))) + (base32 "0ail3w8n5g1ibdamgpxcfpla18kqkilmppiasm7ms67cavx2k5k7")))) (build-system r-build-system) (propagated-inputs (list r-ps r-r6)) @@ -6204,14 +6391,14 @@ Markdown documents.") (define-public r-seriation (package (name "r-seriation") - (version "1.3.3") + (version "1.3.5") (source (origin (method url-fetch) (uri (cran-uri "seriation" version)) (sha256 (base32 - "1f6hxbrixqaj4vh4svff5pz9ny9h10snrrigk2r9c59amhkgih80")))) + "0dlj0mqpg585m6i7yn0h878i8ag6pyqph98xkk42i2nvghpy01gr")))) (build-system r-build-system) (propagated-inputs (list r-cluster @@ -6301,17 +6488,17 @@ to variables on the left-hand side of the assignment.") (define-public r-vctrs (package (name "r-vctrs") - (version "0.3.8") + (version "0.4.0") (source (origin (method url-fetch) (uri (cran-uri "vctrs" version)) (sha256 (base32 - "1c8v5lmap6iq4jpi7p3w05hsv2dq7rjg057pvnfyc5d1xmsqnkkz")))) + "0bslr22jnnwxx45s1a19az6saqf2svi8vkjf64pnpc6rma4ygpl9")))) (build-system r-build-system) (propagated-inputs - (list r-ellipsis r-glue r-rlang)) + (list r-cli r-glue r-rlang)) (native-inputs (list r-knitr)) (home-page "https://github.com/r-lib/vctrs") @@ -6388,14 +6575,14 @@ packages that work with genomic data.") (define-public r-uuid (package (name "r-uuid") - (version "1.0-3") + (version "1.0-4") (source (origin (method url-fetch) (uri (cran-uri "uuid" version)) (sha256 (base32 - "0il35jnci537r8zkinyiy5jp5q530p85ln6dswpj884zclrlcvj5")))) + "08j3ylf49l9qslhlcxvix3mqw6hh8kxainnklv0qmwmwj6q6i5i8")))) (build-system r-build-system) (home-page "https://www.rforge.net/uuid") (synopsis "Tools for generating and handling of UUIDs") @@ -6407,14 +6594,14 @@ packages that work with genomic data.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.37") + (version "0.38") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "1na8g4z1crq0ia9ba17d0qxaif47jij2z3y14xlxjv7x243k6krg")))) + "11hww4x4q44xg559gplmjc6hmzmap0w249nnzyw5dy2ys30bbhga")))) (build-system r-build-system) (propagated-inputs (list r-xfun)) @@ -6676,13 +6863,13 @@ information between package updates.") (define-public r-leaflet (package (name "r-leaflet") - (version "2.1.0") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "leaflet" version)) (sha256 - (base32 "0i2ziy3zmya3i0v4ma0b1ymw4mds7di0xjirs452n20z8l31lhhs")) + (base32 "0xsng9n08i1w7qj4hbi706m6d8jm9ixrnwq5xac2s3csfm1s1xij")) (snippet '(for-each delete-file @@ -6973,14 +7160,14 @@ financial trading strategies.") (define-public r-tseries (package (name "r-tseries") - (version "0.10-49") + (version "0.10-50") (source (origin (method url-fetch) (uri (cran-uri "tseries" version)) (sha256 (base32 - "1fhldj95d16cwygw8xg0kvr4xk569mpzprdvahlsf4hzykc2dgs5")))) + "16654v691jqpgiisz442h9znlxgj96c9gvhk3pgmm48bfsxs6iqw")))) (build-system r-build-system) (propagated-inputs (list r-quadprog r-quantmod r-zoo)) @@ -7111,14 +7298,14 @@ applied econometric analysis.") (define-public r-cubature (package (name "r-cubature") - (version "2.0.4.2") + (version "2.0.4.4") (source (origin (method url-fetch) (uri (cran-uri "cubature" version)) (sha256 (base32 - "0kk9lw3s66h0sayza3in8rdj7bmgqn4v5lfckhslarpvj2fxsnv0")))) + "0sfmcy5xpa40w3qn0jbg7b802wksl5k8glz9jpx77n159wn3nyq8")))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -7464,6 +7651,26 @@ files.") environment within Shiny.") (license license:expat))) +(define-public r-rafalib + (package + (name "r-rafalib") + (version "1.0.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "rafalib" version)) + (sha256 + (base32 "1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k")))) + (properties `((upstream-name . "rafalib"))) + (build-system r-build-system) + (propagated-inputs (list r-rcolorbrewer)) + (home-page "https://cran.r-project.org/package=rafalib") + (synopsis "Convenience functions for routine data exploration") + (description + "This package provides a series of shortcuts for routine tasks to +facilitate data exploration.") + (license license:artistic2.0))) + (define-public r-randomizr (package (name "r-randomizr") @@ -8210,16 +8417,18 @@ using the @code{snow} package.") (define-public r-fstcore (package (name "r-fstcore") - (version "0.9.8") + (version "0.9.12") (source (origin (method url-fetch) (uri (cran-uri "fstcore" version)) (sha256 - (base32 "1qicjwsm87wgjm5mxrsgi697fmcfz6wyqcxfgngwxrf8kq4awjsf")))) + (base32 "1a5m68n2dqhi3r8wf5jwg4vjvl550c7wypcf5j0xmkvl836yg1lg")))) (properties `((upstream-name . "fstcore"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) + (inputs (list zlib)) + (native-inputs (list pkg-config)) (home-page "https://www.fstpackage.org/fstcore/") (synopsis "R bindings to the fstlib library") (description @@ -9049,14 +9258,14 @@ steps and provides ggplot2-based elegant data visualization.") (define-public r-fansi (package (name "r-fansi") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "fansi" version)) (sha256 (base32 - "0mxm06png4lrl5gy5giws5dgig2faryang8y0wcvwfk120pczqni")))) + "0sn0kflgcn2qrrv646pzqylm02cx8l5ws473ppmvla4xihyvi9w6")))) (build-system r-build-system) (native-inputs (list r-knitr)) ; for vignettes @@ -9171,15 +9380,16 @@ contrasts).") (define-public r-polynom (package (name "r-polynom") - (version "1.4-0") + (version "1.4-1") (source (origin (method url-fetch) (uri (cran-uri "polynom" version)) (sha256 (base32 - "1pflscwc0qzdf0y60j7s0dkglgmz18xajywfbn6s263idyr8idy5")))) + "0y4j07syjwpnq5w6a1d90z6h1hjzijmm42pq0f8jk2vcn5xxn7mw")))) (build-system r-build-system) + (native-inputs (list r-knitr)) (home-page "https://cran.r-project.org/web/packages/polynom/") (synopsis "Functions for univariate polynomial manipulations") (description @@ -9269,14 +9479,14 @@ hierarchical models using Markov Chain Monte Carlo (MCMC) simulation.") (define-public r-rbibutils (package (name "r-rbibutils") - (version "2.2.7") + (version "2.2.8") (source (origin (method url-fetch) (uri (cran-uri "rbibutils" version)) (sha256 (base32 - "1iamdbww3hvxy0bbywc307kyhiczx0bvfhw7nngsm33balcng7kw")))) + "0lnia2fk8zlvkkgnl7r7dyi1ip5vqlw448qrvqs2s14rpbpcvbpi")))) (properties `((upstream-name . "rbibutils"))) (build-system r-build-system) (home-page "https://geobosh.github.io/rbibutils/") @@ -9291,14 +9501,14 @@ implemented in bibutils.") (define-public r-rdpack (package (name "r-rdpack") - (version "2.1.4") + (version "2.3") (source (origin (method url-fetch) (uri (cran-uri "Rdpack" version)) (sha256 (base32 - "0r242a352wa7kha0n62ng6ri0qi14hwjknnyjvfcd7mx4qvfwhgv")))) + "1igpa4hnpiykbdnq57mglby5jsbind6izkkfy81wx4ib6nw1lpn4")))) (properties `((upstream-name . "Rdpack"))) (build-system r-build-system) (propagated-inputs @@ -9317,19 +9527,17 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.4.1") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "1gfx299zr4q2264q37994pirv5bd5isn1cszccz603ij3q40wajr")))) + "0qmn62srh9zicgizyblanirbdva7f09g967yb86kfrn05ckh5y10")))) (build-system r-build-system) (propagated-inputs (list r-r6 r-uuid r-xml2 r-zip)) - (native-inputs - (list r-knitr)) (home-page "https://davidgohel.github.io/officer") (synopsis "Manipulation of Word and PowerPoint documents") (description @@ -9535,14 +9743,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.16.0") + (version "0.17.0") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "0gcyps0889rys04bj70br5zfvzcqxd55yawykmns17n9hsixfi3r")))) + "1rxcy8nyg3y50czm3y1x2pibivywcb1bjmvpyqlzg4yy2j84v69p")))) (build-system r-build-system) (native-inputs (list r-knitr)) @@ -9563,17 +9771,17 @@ information are missing.") (define-public r-sjlabelled (package (name "r-sjlabelled") - (version "1.1.8") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "sjlabelled" version)) (sha256 (base32 - "17gskxr43rgbg7syla3b78g2qgksq2kj07iad4139xycqxblxya0")))) + "1va86q5wddyvqgdpy8d0an2c7v1qbb4hpn0ai6y1v5v1ff87w73k")))) (build-system r-build-system) (propagated-inputs - (list r-insight)) + (list r-datawizard r-insight)) (native-inputs (list r-knitr)) (home-page "https://github.com/strengejacke/sjlabelled") @@ -9845,14 +10053,14 @@ and automatically generate usage notices.") (define-public r-hash (package (name "r-hash") - (version "2.2.6.1") + (version "2.2.6.2") (source (origin (method url-fetch) (uri (cran-uri "hash" version)) (sha256 (base32 - "0b3fl0rvgwb992knl81vm99lsldg5clvaqjh6mamm6zqmb6dz056")))) + "17scs675a86c34hjbxmwi8kny4yyv97x3515s449zafj2i0ad8vm")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/hash/") (synopsis "Implementation of hash/associated arrays/dictionaries") @@ -10179,14 +10387,14 @@ and make comparisons between different methodologies straightforward.") (define-public r-infotheo (package (name "r-infotheo") - (version "1.2.0") + (version "1.2.0.1") (source (origin (method url-fetch) (uri (cran-uri "infotheo" version)) (sha256 (base32 - "18xacczfq3z3xpy434js4nf3l19lczngzd0lq26wh22pvg1yniwv")))) + "1m1979vf8rvq3534mp1hihfadikhxrg3p6ac3hirz96kgb4qxyy0")))) (build-system r-build-system) (home-page "http://homepage.meyerp.com/software") (synopsis "Information-theoretic measures") @@ -10580,14 +10788,14 @@ both to consistency and asymptotic normality.") (define-public r-dofuture (package (name "r-dofuture") - (version "0.12.0") + (version "0.12.1") (source (origin (method url-fetch) (uri (cran-uri "doFuture" version)) (sha256 (base32 - "1hqzdlgcrc5l6xjwdylsc9iiysi2wx8k1j1vmw3wryj26057c9y4")))) + "0fhk32ih9cbwxw3mvkddqjv0dsaw9xk8qjdslfcabvmixhnh3s6m")))) (properties `((upstream-name . "doFuture"))) (build-system r-build-system) (arguments @@ -11650,13 +11858,13 @@ series.") (define-public r-acceptancesampling (package (name "r-acceptancesampling") - (version "1.0-7") + (version "1.0-8") (source (origin (method url-fetch) (uri (cran-uri "AcceptanceSampling" version)) (sha256 - (base32 "13k3zczjycw24n5yp0qmrm233id5j8h6fvra57f1n6js7ljxiiq2")))) + (base32 "1ja1g0v8qvf7yj81x37wc6i7fkwpc573756jgvazazi8yf1gm12p")))) (properties `((upstream-name . "AcceptanceSampling"))) (build-system r-build-system) @@ -11817,14 +12025,14 @@ the differences were not significantly different.") (define-public r-emmeans (package (name "r-emmeans") - (version "1.7.2") + (version "1.7.3") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "1g112yvqvxi83x128hwz4qpifwihlm0y5szg82cdsx3c9cm1rrfk")))) + "0kbbin3zfxqkm5awq4331fv7y2kfpdhkwrqh91prl7qpf8kscin6")))) (build-system r-build-system) (propagated-inputs (list r-estimability r-mvtnorm r-numderiv r-xtable)) @@ -11946,14 +12154,14 @@ Bayesian modeling.") (define-public r-tmb (package (name "r-tmb") - (version "1.8.0") + (version "1.8.1") (source (origin (method url-fetch) (uri (cran-uri "TMB" version)) (sha256 (base32 - "158spsz8inxhs3dw6cq2wwkkhvgkfjyyz577s89x08yly7layq2l")))) + "1hzvvx1g5nkmiqwzihj8nir48k7idbw1jvb14ldjk9rsikgpywdl")))) (properties `((upstream-name . "TMB"))) (build-system r-build-system) (propagated-inputs @@ -12076,14 +12284,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.8.0") + (version "0.9.0") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "1xjjnhqmwfflm5yfgjhycjn0fj0manvsvkk2ppifn0373bajp5n2")))) + "1znr4i1pjv6z3lj6qrma2i3l94rz1z29w92mrxxfy3ch0s71crww")))) (build-system r-build-system) (propagated-inputs (list r-bayestestr r-datawizard r-insight)) @@ -12102,14 +12310,14 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "1.1.1") + (version "1.1.2") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "0xrb105kblkj3l9zlj9yy52rjlmx5x2aai1wwb5zvjr1f6nlc84l")))) + "01yyfw7fkbxrp0gpwni5y8m4w9l3xckwc3crnvy1fqs1d6gwx3xx")))) (build-system r-build-system) (propagated-inputs (list r-insight r-mass r-sjlabelled)) @@ -12385,14 +12593,14 @@ user credentials.") (define-public r-gert (package (name "r-gert") - (version "1.5.0") + (version "1.6.0") (source (origin (method url-fetch) (uri (cran-uri "gert" version)) (sha256 (base32 - "1bm2fjyh527y6x0dr5cs8h31jgl1fkk09ljzj1h37d0c7f4k1hwz")))) + "0r19vi77yyjw5gbhgjibdysjlszlw2095v14f6sv675zpbp0li4c")))) (properties `((upstream-name . "gert"))) (build-system r-build-system) (inputs @@ -12558,17 +12766,17 @@ of the individual checks.") (define-public r-rapportools (package (name "r-rapportools") - (version "1.0") + (version "1.1") (source (origin (method url-fetch) (uri (cran-uri "rapportools" version)) (sha256 (base32 - "1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b")))) + "0qr86idng12g6hdd764j0wmli700v7rjhw7jdjxj0ka8xm5v7ymm")))) (build-system r-build-system) (propagated-inputs - (list r-pander r-plyr r-reshape)) + (list r-mass r-pander r-plyr r-reshape2)) (home-page "https://cran.r-project.org/web/packages/rapportools/") (synopsis "Miscellaneous helper functions with sane defaults for reporting") (description @@ -12580,14 +12788,14 @@ quick reporting.") (define-public r-pander (package (name "r-pander") - (version "0.6.4") + (version "0.6.5") (source (origin (method url-fetch) (uri (cran-uri "pander" version)) (sha256 (base32 - "1knjcr50xxns3w3kh15myjpsizn4d7fdqx071a4yj90imif07qjh")))) + "144zkq5w7v6fpzk3x40i0baybbp0y6x2ckh4b9qljryas9mhgp9a")))) (build-system r-build-system) (propagated-inputs (list r-digest r-rcpp)) @@ -12778,14 +12986,14 @@ analysing multivariate abundance data in community ecology.") (define-public r-afex (package (name "r-afex") - (version "1.0-1") + (version "1.1-0") (source (origin (method url-fetch) (uri (cran-uri "afex" version)) (sha256 (base32 - "1k04n6gwk2n8kg0l3yk5j3wrqgkv5f6w04yjpif9y451hx5w7svg")))) + "0h8zqv82dqll19l3p89a2csvgnx8ayb2bajq7b35a8svhj427zax")))) (build-system r-build-system) ;; This is needed for the vignette builder (arguments @@ -13408,13 +13616,13 @@ Anderson-Darling Distribution\".") (define-public r-admisc (package (name "r-admisc") - (version "0.25") + (version "0.26") (source (origin (method url-fetch) (uri (cran-uri "admisc" version)) (sha256 - (base32 "0cf8dy0mi3ynm2ic8jp0qi1samyzashwlzz0l64izqqv2s4hpyzp")))) + (base32 "19zkwyp8gvq8f74midmwld4azx44sbqxqx9mgs726i6dhnls6821")))) (properties `((upstream-name . "admisc"))) (build-system r-build-system) (home-page "https://github.com/dusadrian/admisc") @@ -14031,13 +14239,13 @@ Touzet and Varre (2007).") (define-public r-rncl (package (name "r-rncl") - (version "0.8.4") + (version "0.8.6") (source (origin (method url-fetch) (uri (cran-uri "rncl" version)) (sha256 (base32 - "0ss9jqrvv7bhvl5j74cjrp8r866d9dlavrbbfscwz3mhkgfx06bb")))) + "1ywgwqn82z8h6zpcxxq4hgngdpfa6dj0lr7bfq4cwfml9z075jgw")))) (build-system r-build-system) (propagated-inputs (list r-progress r-rcpp)) @@ -14273,14 +14481,14 @@ be imported and then exported via the @code{gridSVG} package.") (define-public r-kohonen (package (name "r-kohonen") - (version "3.0.10") + (version "3.0.11") (source (origin (method url-fetch) (uri (cran-uri "kohonen" version)) (sha256 (base32 - "1ck7j13x701g67bx81x7plszz804jfhl1yg42krcj9x88vm5cscr")))) + "1bk3j0n8w4fhffv89rgyn4n21c0wcx6lr8jv4wbagpxprl585381")))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -14548,14 +14756,14 @@ preparing, executing, and processing HTTP requests.") (define-public r-gmp (package (name "r-gmp") - (version "0.6-4") + (version "0.6-5") (source (origin (method url-fetch) (uri (cran-uri "gmp" version)) (sha256 (base32 - "0vfhz5cpffcrmq011h7jvy1r6d5pbbpkxj8431bhj5x5h25x7sjn")))) + "0llyd1wx606vpgvv7d61m0fv2a5yxsmisd38fhzanbjl2wynzrwa")))) (build-system r-build-system) (arguments '(#:phases @@ -15290,14 +15498,14 @@ library.") (define-public r-protviz (package (name "r-protviz") - (version "0.7.0") + (version "0.7.3") (source (origin (method url-fetch) (uri (cran-uri "protViz" version)) (sha256 (base32 - "0l1pmfr9kmc90rl5s9b0141451rxrjmiiasp3lsvl2x3ps0smqaj")))) + "0f6jwzcqi0w37hvg3i5dlk0c3anpkqh54ibf94vaf17r8sykr4nw")))) (properties `((upstream-name . "protViz"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -15543,14 +15751,14 @@ them in distributed compute environments.") (define-public r-parallelly (package (name "r-parallelly") - (version "1.30.0") + (version "1.31.0") (source (origin (method url-fetch) (uri (cran-uri "parallelly" version)) (sha256 (base32 - "0fwzkzw9vjblwk5rg56yl8qfn7irnbpm70405lmj7awvf35q1c5a")))) + "0kjwxgxnlpjbxpr1dyzk3nyx9fwa6vwqr22bvsxz56xwxnirzdxx")))) (properties `((upstream-name . "parallelly"))) (build-system r-build-system) (home-page "https://github.com/HenrikBengtsson/parallelly") @@ -15902,14 +16110,14 @@ database.") (define-public r-outliers (package (name "r-outliers") - (version "0.14") + (version "0.15") (source (origin (method url-fetch) (uri (cran-uri "outliers" version)) (sha256 (base32 - "0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn")))) + "1yrmwvjjb0a6sbx940k9svf23cykcxz8rrwcgyic7lpgzbrdfcfc")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/outliers/index.html") (synopsis "Tests for outliers") @@ -16195,14 +16403,14 @@ select colors to use in your R code.") (define-public r-ggextra (package (name "r-ggextra") - (version "0.9") + (version "0.10.0") (source (origin (method url-fetch) (uri (cran-uri "ggExtra" version)) (sha256 (base32 - "18mbi6gblqmrsciad1d2c9ngllk6mayaqj43k40hjq9ydqnvjbgj")))) + "1rd3qv6ah3zphr1jicjhgxms73vi496mjnxnsrcgl7z8nyxmas6w")))) (properties `((upstream-name . "ggExtra"))) (build-system r-build-system) (propagated-inputs @@ -16314,14 +16522,14 @@ probabilities from a standard bivariate normal CDF.") (define-public r-lavaan (package (name "r-lavaan") - (version "0.6-10") + (version "0.6-11") (source (origin (method url-fetch) (uri (cran-uri "lavaan" version)) (sha256 (base32 - "0dwc8rgrzyrrb0ivx297ln2qbrsxbpn6mdf7laiffhspdpml8sad")))) + "026k32paf51lpy6zxm9m81zg9szx14j37dxdip6nba334jw97h9c")))) (build-system r-build-system) (propagated-inputs (list r-mass r-mnormt r-numderiv r-pbivnorm)) @@ -16437,14 +16645,14 @@ also provides tools for efficient random number generation and graphics.") (define-public r-beanplot (package (name "r-beanplot") - (version "1.2") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "beanplot" version)) (sha256 (base32 - "0wmkr704fl8kdxkjwmaxw2a2h5dwzfgsgpncnk2p2wd4768jknj9")))) + "1b8mvlcsv5l9g08ag92hndsvk8jmgxvznhzgazc8y4296kp8l5a9")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/beanplot/") (synopsis "Visualization via beanplots") @@ -17195,13 +17403,13 @@ datum transformations.") (define-public r-spdep (package (name "r-spdep") - (version "1.2-2") + (version "1.2-3") (source (origin (method url-fetch) (uri (cran-uri "spdep" version)) (sha256 (base32 - "08sya6vy7s87h337g2fanncw6xx9y9z8nxpqalbdxv9vpsc6zx4l")) + "0qd7qjblx49gp07pcf4qb2f93ab3p126pa77g6mq4z3jaa510hak")) (snippet '(for-each delete-file '("inst/doc/CO69.html" "inst/doc/CO69.R" @@ -17640,13 +17848,13 @@ SELECT or UPDATE queries to an end-point.") (define-public r-bookdown (package (name "r-bookdown") - (version "0.24") + (version "0.25") (source (origin (method url-fetch) (uri (cran-uri "bookdown" version)) (sha256 (base32 - "1qqvvfbpbd6sin8vpvr3zzlhlyx1i6b98yp77xj5zl220nid5slb")))) + "0v5nlm3lbm0h5cvd9j2211yqk68rkm416aq8qp6r8klj69xm1bri")))) (build-system r-build-system) (propagated-inputs (list r-htmltools @@ -17695,13 +17903,13 @@ that accept short and long options.") (define-public r-kernlab (package (name "r-kernlab") - (version "0.9-29") + (version "0.9-30") (source (origin (method url-fetch) (uri (cran-uri "kernlab" version)) (sha256 - (base32 "0vqhndl4zm7pvkfvq0f6i9cbrm7pij6kmdp7d7w39pa100x6knn3")))) + (base32 "10gfb542nbl1d5pfy6r7gcg3j1ikra9l18r6xjv8lzp5ka1kmz28")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/kernlab") (synopsis "Kernel-based machine learning tools") @@ -18000,14 +18208,14 @@ the XKCD web comic.") (define-public r-babelgene (package (name "r-babelgene") - (version "21.4") + (version "22.3") (source (origin (method url-fetch) (uri (cran-uri "babelgene" version)) (sha256 (base32 - "1gk5pm3b3shr1id66a11ywc1b823gbj8yckg24szzfhj8g4ixyf0")))) + "1735h4s2vahv55pmq65zkgxq8d5x71i1is03rf17dric8yynjjhg")))) (properties `((upstream-name . "babelgene"))) (build-system r-build-system) (propagated-inputs @@ -18030,14 +18238,14 @@ compiled by the HGNC Comparison of Orthology Predictions (HCOP).") (define-public r-msigdbr (package (name "r-msigdbr") - (version "7.4.1") + (version "7.5.1") (source (origin (method url-fetch) (uri (cran-uri "msigdbr" version)) (sha256 (base32 - "103m52av68pkjfh8f81qh6j3cs1mj1lg831ciwybr34cax767jr1")))) + "1jna9bkq0a7r6f8nhxziyiw75kfhsyh1rv7sx5d4551mvxxlhc6w")))) (build-system r-build-system) (propagated-inputs (list r-babelgene @@ -18600,14 +18808,14 @@ repository.") (define-public r-mpm (package (name "r-mpm") - (version "1.0-22") + (version "1.0-23") (source (origin (method url-fetch) (uri (cran-uri "mpm" version)) (sha256 (base32 - "0wijw8v0wmbfrda5564cmnp788qmlkk21yn5cp5qk8aprm9l1fnk")))) + "1jpv2ddmw7aarqbbyfys1yb840arw33319wnny3v2hk84hldmayj")))) (build-system r-build-system) (propagated-inputs (list r-kernsmooth r-mass)) @@ -18668,14 +18876,14 @@ function for computing a matrix of correlation p-values.") (define-public r-ggfun (package (name "r-ggfun") - (version "0.0.5") + (version "0.0.6") (source (origin (method url-fetch) (uri (cran-uri "ggfun" version)) (sha256 (base32 - "10spayf5jzmizhs6aassjplrjr9mr6bcww30pyxzyb1djfl41qxi")))) + "06si42b60hp8wprs5nbks93qlb9s269k9kw7akcirizwc399x62r")))) (properties `((upstream-name . "ggfun"))) (build-system r-build-system) (propagated-inputs @@ -18961,14 +19169,14 @@ external dependencies. This package has is implemented purely in R.") (define-public r-aplot (package (name "r-aplot") - (version "0.1.2") + (version "0.1.3") (source (origin (method url-fetch) (uri (cran-uri "aplot" version)) (sha256 (base32 - "1w09flb6a4fxibfrm1z24pg672r80b7phgc0m7mv3vfw3l84v749")))) + "10cqa35bh4lhpnybaalp3d69k392b25ba16dgbngqz0vikzp4czk")))) (properties `((upstream-name . "aplot"))) (build-system r-build-system) (propagated-inputs @@ -18991,14 +19199,14 @@ matched.") (define-public r-ggnewscale (package (name "r-ggnewscale") - (version "0.4.6") + (version "0.4.7") (source (origin (method url-fetch) (uri (cran-uri "ggnewscale" version)) (sha256 (base32 - "08xqhv6y9m9f2p8q3h0dh7mbpqg3r2i590x2983k69plfa5jxzv3")))) + "108a7y6sqqvzyfk247lbmnacfpwdl405rf1b3fa62cgx8ycsq4kb")))) (properties `((upstream-name . "ggnewscale"))) (build-system r-build-system) (propagated-inputs @@ -19124,14 +19332,14 @@ industry for machine learning tasks.") (define-public r-float (package (name "r-float") - (version "0.2-6.1") + (version "0.3-0") (source (origin (method url-fetch) (uri (cran-uri "float" version)) (sha256 (base32 - "07b3zaccrybd1vail8hs4kmcn3djqmr72j63h01rkmij2ry8pv8d")))) + "0m7bf3548vlgkk1c78jyrgj72ngwg0gsccap2iqinm3l3qrm4zbs")))) (properties `((upstream-name . "float"))) (build-system r-build-system) (native-inputs @@ -19220,14 +19428,14 @@ multicore machines.") (define-public r-mcmcpack (package (name "r-mcmcpack") - (version "1.6-1") + (version "1.6-2") (source (origin (method url-fetch) (uri (cran-uri "MCMCpack" version)) (sha256 (base32 - "1skanp6czfk83s13dnjrb699m9z6a0r59q0f79fv0k560jc8vbrj")))) + "18nyncvgb75q8flndni99ldr7ynqhillphkj7ydsmfv5w8b0zvqp")))) (properties `((upstream-name . "MCMCpack"))) (build-system r-build-system) (propagated-inputs @@ -19880,17 +20088,17 @@ easily.") (define-public r-umap (package (name "r-umap") - (version "0.2.7.0") + (version "0.2.8.0") (source (origin (method url-fetch) (uri (cran-uri "umap" version)) (sha256 (base32 - "191vpy84s0bar06y9z1qx43x2kc4qp7lmrcmd0cvz2pnzq722jab")))) + "0aiarnzc8gl932gi8fxd9f9rshaiwh9vj570l135fkiaja3q2wap")))) (build-system r-build-system) (propagated-inputs - (list r-openssl r-rcpp r-reticulate r-rspectra)) + (list r-matrix r-openssl r-rcpp r-reticulate r-rspectra)) (native-inputs (list r-knitr)) (home-page "https://github.com/tkonopka/umap") @@ -20354,23 +20562,24 @@ files is supported.") (define-public r-tidygraph (package (name "r-tidygraph") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "tidygraph" version)) (sha256 (base32 - "17qjns33zcj82jcsl7bn7i4zxcm7ric50zyf7agi0i01zi16qz85")))) + "0dmdff3bkg53xn0c51xd6k2d9c7l250x1lhl5z3libf533dw5g9g")))) (properties `((upstream-name . "tidygraph"))) (build-system r-build-system) (propagated-inputs - (list r-dplyr + (list r-cli + r-cpp11 + r-dplyr r-igraph r-magrittr r-pillar r-r6 - r-rcpp r-rlang r-tibble r-tidyr)) @@ -20468,13 +20677,13 @@ effect size.") (define-public r-rgdal (package (name "r-rgdal") - (version "1.5-28") + (version "1.5-30") (source (origin (method url-fetch) (uri (cran-uri "rgdal" version)) (sha256 - (base32 "18k1w8cb77h4mw1m5b21r0fng40arb1md24fyriv83ccz8n46m3z")))) + (base32 "1f4zshgkaifbfcgq61vqb7jw5w2cc128d98rq2465r8696q2p0s9")))) (properties `((upstream-name . "rgdal"))) (build-system r-build-system) (inputs @@ -20599,13 +20808,13 @@ programming problems.") (define-public r-desolve (package (name "r-desolve") - (version "1.30") + (version "1.31") (source (origin (method url-fetch) (uri (cran-uri "deSolve" version)) (sha256 - (base32 "0j7mmg1mimdpql8f4i9dn920ciyyq80a5qnc4fq5xn5lyrx5vxir")))) + (base32 "06gsh514msqdmri78969snhgh22d2bzmnkqfgh0s74aprfd93m8r")))) (properties `((upstream-name . "deSolve"))) (build-system r-build-system) (native-inputs @@ -20628,13 +20837,13 @@ to ODEs by numerical differencing.") (define-public r-pmcmrplus (package (name "r-pmcmrplus") - (version "1.9.3") + (version "1.9.4") (source (origin (method url-fetch) (uri (cran-uri "PMCMRplus" version)) (sha256 - (base32 "00sgk4c7vpmbfifrsbqd5gh7hwdpm8kymlpnnrdzlhvkymhbmfkn")))) + (base32 "16m1pdrzjq9vnx5v7zv56mz9r1205rkw92883cxaqbvdpds6dhqy")))) (properties `((upstream-name . "PMCMRplus"))) (build-system r-build-system) (inputs (list gmp)) @@ -21310,14 +21519,14 @@ Social Sciences\" by Mark S. Handcock and Martina Morris, Springer-Verlag, (define-public r-accept (package (name "r-accept") - (version "0.8.3") + (version "0.9.0") (source (origin (method url-fetch) (uri (cran-uri "accept" version)) (sha256 (base32 - "0qn4lm6bk0z2iijwsfbymx1c9y39988fw124ncgmlrgw5kv80b7x")))) + "13kx8fbnbpasjklgbq2rf4n73j2s8rvy5v77ywqhfzln24937qgh")))) (properties `((upstream-name . "accept"))) (build-system r-build-system) (propagated-inputs @@ -21522,23 +21731,21 @@ and mixture of Gaussian models.") (define-public r-accsda (package (name "r-accsda") - (version "1.0.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "accSDA" version)) (sha256 (base32 - "0sgxy5y8kkc1n35657kifwfjsba7y5m1vbr7rkk5lmbpkzahqm61")))) + "104xdz63mnibh6827xm0pfr9zbhbi2a7iw4m1x27xjqi7zqvbky6")))) (properties `((upstream-name . "accSDA"))) (build-system r-build-system) (propagated-inputs (list r-ggplot2 r-ggthemes r-gridextra - r-mass - r-rarpack - r-sparselda)) + r-mass)) (home-page "https://github.com/gumeo/accSDA/wiki") (synopsis "Accelerated sparse discriminant analysis") (description @@ -21663,14 +21870,14 @@ See e.g. Gentle (2003) @url{doi:10.1007/b97336}.") (define-public r-lhs (package (name "r-lhs") - (version "1.1.4") + (version "1.1.5") (source (origin (method url-fetch) (uri (cran-uri "lhs" version)) (sha256 (base32 - "1dim6pw2vjvsk269dff5bzpnyh9rp4qa9gj8y61bd31384q5c92c")))) + "0fb3bc3s5pbwg92qkjbg7v8ah36wm6qs05vf098hwjakr7f6yg3s")))) (properties `((upstream-name . "lhs"))) (build-system r-build-system) (propagated-inputs (list r-rcpp)) @@ -22095,14 +22302,14 @@ provided as well.") (define-public r-tuner (package (name "r-tuner") - (version "1.3.3.1") + (version "1.4.0") (source (origin (method url-fetch) (uri (cran-uri "tuneR" version)) (sha256 (base32 - "12nixpqrc5gp7p2clr7ia6jwb0jq2i3brlxiwlp00ixmnm5g1jyd")))) + "1sd0drxzbdy71bh35fccg9ajhpdhdpy0m9nja2lw82p1pzhyl7jn")))) (properties `((upstream-name . "tuneR"))) (build-system r-build-system) (propagated-inputs (list r-signal)) @@ -22221,14 +22428,14 @@ both exponential and logistic loss on a given data set.") (define-public r-genalg (package (name "r-genalg") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "genalg" version)) (sha256 (base32 - "1wzfamq8k5yhwbdx0wy1w5bks93brj0p890xxc4yqrja4w38ja3s")))) + "1y4qz1s85zpd1r3259gr542arssf2vpd4drhy0wnq5q47ignrvna")))) (properties `((upstream-name . "genalg"))) (build-system r-build-system) (home-page "https://github.com/egonw/genalg") @@ -22943,14 +23150,14 @@ communities\" by MS Johnson (1926) @url{doi:10.2307/1373575}.") (define-public r-expint (package (name "r-expint") - (version "0.1-6") + (version "0.1-7") (source (origin (method url-fetch) (uri (cran-uri "expint" version)) (sha256 (base32 - "0iai25cglcdnf44d2d1fz1xpw4q600my4zq4493fk4cs5673mlf7")))) + "01d0a7pc4qx7044a0cymnv5ld88r90vdvlqjbnzg9qlfbizdgyvw")))) (properties `((upstream-name . "expint"))) (build-system r-build-system) (home-page "https://gitlab.com/vigou3/expint") @@ -22966,14 +23173,14 @@ API; see the package vignette for details.") (define-public r-actuar (package (name "r-actuar") - (version "3.2-1") + (version "3.2-2") (source (origin (method url-fetch) (uri (cran-uri "actuar" version)) (sha256 (base32 - "1avqgkls4xvwgfr6j7g2f7p474rlpi82q5aksw8nzf8wcyp7592f")))) + "0dhpaivyga0jwvw1csagbx74biy9jfkw4a8sa871579njxl1x7p1")))) (properties `((upstream-name . "actuar"))) (build-system r-build-system) (propagated-inputs (list r-expint)) @@ -23309,14 +23516,14 @@ Johnson-Graybill, LBI, Tusell and modified Tukey non-additivity tests.") (define-public r-flexclust (package (name "r-flexclust") - (version "1.4-0") + (version "1.4-1") (source (origin (method url-fetch) (uri (cran-uri "flexclust" version)) (sha256 (base32 - "0x7wxk8y46ndyz6fdacym0rd6p9wh3pcfr28chjcg5d7fm849zl2")))) + "13akk3w6a76jpws5v9108c3hdmb8i6gm0sc06lr2hqly0pgpfyfn")))) (properties `((upstream-name . "flexclust"))) (build-system r-build-system) (propagated-inputs @@ -24552,14 +24759,14 @@ package by providing: (define-public r-sem (package (name "r-sem") - (version "3.1-14") + (version "3.1-15") (source (origin (method url-fetch) (uri (cran-uri "sem" version)) (sha256 (base32 - "18m54hjl3w57n4ygnkcy80w0dc9dz1zvavjqh9sl6nqs52f9m246")))) + "05hk72zxvyv6kkjhk5y6qw253c64108az7030z8j1sz8wq03n0md")))) (properties `((upstream-name . "sem"))) (build-system r-build-system) (propagated-inputs @@ -24797,14 +25004,14 @@ output in R.") (define-public r-bdgraph (package (name "r-bdgraph") - (version "2.64") + (version "2.65") (source (origin (method url-fetch) (uri (cran-uri "BDgraph" version)) (sha256 (base32 - "0pnzbw09c7amsvj8l4p1jnmss4rkbr1dsmagiygh8lj5fbrklgr4")))) + "0rg3wi9xwsbj90gb60p3vzkfrf76hwh47nc6fwv6c21yzd3s7vm4")))) (properties `((upstream-name . "BDgraph"))) (build-system r-build-system) (propagated-inputs @@ -24923,14 +25130,14 @@ translated to input syntax for the R packages @code{sem} and @code{lavaan}.") (define-public r-cdm (package (name "r-cdm") - (version "7.5-15") + (version "7.6-11") (source (origin (method url-fetch) (uri (cran-uri "CDM" version)) (sha256 (base32 - "159ny2dz0rf1r3k1mqlfwambffc8rx425sggf5bn51nybpzanq3l")))) + "0k3arkzz7nzswjcsr7fdmpfs94ilg8l265dyn49555fw3673cgqj")))) (properties `((upstream-name . "CDM"))) (build-system r-build-system) (propagated-inputs @@ -25244,14 +25451,14 @@ using the @code{rstan} and @code{rstanarm} packages).") (define-public r-rstantools (package (name "r-rstantools") - (version "2.1.1") + (version "2.2.0") (source (origin (method url-fetch) (uri (cran-uri "rstantools" version)) (sha256 (base32 - "0b9x8rzj3dr4m7yjx476nn42z22xd1xnw85m9frfwxy5ivg1any9")))) + "1dsfgi02hps878n3vimfdbzpm4gr5n3ccrmnc61ncrqcp6p0p0fb")))) (properties `((upstream-name . "rstantools"))) (build-system r-build-system) (inputs (list pandoc)) @@ -25272,13 +25479,13 @@ recommendations for developers.") (define-public r-loo (package (name "r-loo") - (version "2.4.1") + (version "2.5.1") (source (origin (method url-fetch) (uri (cran-uri "loo" version)) (sha256 - (base32 "0l2v8zpashqbnck3qx5lp1gqjcfphzky8mxyw5gfk9wk99mzn8dw")))) + (base32 "1wa5hxk7lkr88mway6b7xd5arrkkl2ldl9rf0v1nqwp8lia2ysl6")))) (properties `((upstream-name . "loo"))) (build-system r-build-system) (inputs @@ -25304,14 +25511,14 @@ techniques to average Bayesian predictive distributions.") (define-public r-rstan (package (name "r-rstan") - (version "2.21.3") + (version "2.21.5") (source (origin (method url-fetch) (uri (cran-uri "rstan" version)) (sha256 (base32 - "1ccjdwh0xspna2c0m5p8as8y2b0lnhdyk9hfd3jh58j6n8fbzg3n")))) + "1smr5cjrqvpdnkmjpjp73p96sy581x15mwrn4fqd1p4d5mbgxr46")))) (properties `((upstream-name . "rstan"))) (build-system r-build-system) (arguments @@ -25354,14 +25561,14 @@ need to derive the partial derivatives.") (define-public r-rstanarm (package (name "r-rstanarm") - (version "2.21.1") + (version "2.21.3") (source (origin (method url-fetch) (uri (cran-uri "rstanarm" version)) (sha256 (base32 - "04ggzak3f7jaxza3dxyrmxp5b48qcgyspy22ykbhr03g4hzp7jk8")))) + "19rj396q84maxnd9d2xcd5rblg3310xn7sqbd6k18kwf3dvd7wp9")))) (properties `((upstream-name . "rstanarm"))) (build-system r-build-system) (inputs @@ -25396,14 +25603,14 @@ a formula and @code{data.frame} plus some additional arguments for priors.") (define-public r-kendall (package (name "r-kendall") - (version "2.2") + (version "2.2.1") (source (origin (method url-fetch) (uri (cran-uri "Kendall" version)) (sha256 (base32 - "0z2yr3x2nvdm81w2imb61hxwcbmg14kfb2bxgh3wmkmv3wfjwkwn")))) + "1xmk95l4i3kj9jn0xh1chi2rj322k29jq14ra5pa7316gwf9vx2m")))) (properties `((upstream-name . "Kendall"))) (build-system r-build-system) (propagated-inputs @@ -26264,14 +26471,14 @@ here.") (define-public r-projpred (package (name "r-projpred") - (version "2.0.2") + (version "2.1.1") (source (origin (method url-fetch) (uri (cran-uri "projpred" version)) (sha256 (base32 - "0nx514mrfh3gv854pr71w5x3zgdnn0kinf5nh7z90q3h7ysry2mg")))) + "170pskvcsyk22xl4q8mklx8nw29miqzb42wajcab7bki8ap1ix46")))) (properties `((upstream-name . "projpred"))) (build-system r-build-system) (propagated-inputs @@ -26281,14 +26488,12 @@ here.") r-lme4 r-loo r-magrittr - r-mass r-mgcv - r-optimx + r-mvtnorm r-rcpp r-rcpparmadillo - r-rngtools - r-rstantools - r-tidyverse)) + r-rlang + r-rstantools)) (native-inputs (list r-knitr)) (home-page "https://mc-stan.org/projpred/") (synopsis "Projection predictive feature selection") @@ -26880,14 +27085,14 @@ you can automate browsers locally or remotely.") (define-public r-conquer (package (name "r-conquer") - (version "1.2.2") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "conquer" version)) (sha256 (base32 - "1z07p4xcrxvnicwgga7hqvqzcxavwirw828285i0xlnz54rqhsc8")))) + "1ynmaf7lgqjb8grsifx5dzy29cd5kz4x3yh0abnl2vxdr4c4wddc")))) (properties `((upstream-name . "conquer"))) (build-system r-build-system) (propagated-inputs @@ -27112,14 +27317,14 @@ matrix calculations that are common in statistics, such as quadratic forms.") (define-public r-spatstat-data (package (name "r-spatstat-data") - (version "2.1-2") + (version "2.1-4") (source (origin (method url-fetch) (uri (cran-uri "spatstat.data" version)) (sha256 (base32 - "1r8s4xl25xr71h4g5qqi5y370h2ik3kz5fb4qyml2b6dwsl1ildv")))) + "0bq9randa3lgkh2q932iss5cxazq743q6p8asiqqf0yi32b003jq")))) (properties `((upstream-name . "spatstat.data"))) (build-system r-build-system) (propagated-inputs @@ -27134,14 +27339,14 @@ package.") (define-public r-spatstat-geom (package (name "r-spatstat-geom") - (version "2.3-2") + (version "2.4-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.geom" version)) (sha256 (base32 - "0aihimb4r6hmk3g7764d3b43a0znf9bzmc96i1lkqq9hwabj7151")))) + "0rwysq9a0ylbsr53q5kfh7wjk5mcdji211sc3s8gwzz8ki09mf1j")))) (properties `((upstream-name . "spatstat.geom"))) (build-system r-build-system) (propagated-inputs @@ -27157,14 +27362,14 @@ for the geometry of linear networks.") (define-public r-spatstat-core (package (name "r-spatstat-core") - (version "2.4-0") + (version "2.4-2") (source (origin (method url-fetch) (uri (cran-uri "spatstat.core" version)) (sha256 (base32 - "1dx6fh6l3bqxqfaczm9gxx1sirmdpx8biag462pj9wjqmw9m4j35")))) + "0bhdxyw212yf9y9nsvbz4yy08ka3wr3hkjqpag0ys2s1p22c51b9")))) (properties `((upstream-name . "spatstat.core"))) (build-system r-build-system) (propagated-inputs @@ -27219,13 +27424,13 @@ for spatial data on a linear network.") (define-public r-spatstat-random (package (name "r-spatstat-random") - (version "2.1-0") + (version "2.2-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.random" version)) (sha256 - (base32 "0ggzl64iqf7b6n81ga66wb01sm4rmzrbimv2pmgy047mjnqsnpq4")))) + (base32 "0kb01s8k67ydcfqcnz3i55vpiksihh4xsg0w2p2bclxxkpdvpw25")))) (properties `((upstream-name . "spatstat.random"))) (build-system r-build-system) (propagated-inputs (list r-spatstat-data r-spatstat-geom r-spatstat-utils)) @@ -27247,14 +27452,14 @@ sampler).") (define-public r-spatstat (package (name "r-spatstat") - (version "2.3-3") + (version "2.3-4") (source (origin (method url-fetch) (uri (cran-uri "spatstat" version)) (sha256 (base32 - "0skk377fw448gvdk6jkcviqbqdjn2vdz19vfk8aiilxax4xba1hr")))) + "1nlrp7660y68axlm4pczc5rxbdhbbac1ylh69azr4swj1gbzi82f")))) (properties `((upstream-name . "spatstat"))) (build-system r-build-system) (propagated-inputs @@ -27666,14 +27871,14 @@ and @url{https://doi.org/10.1093/molbev/msw275,Didelot et al. (2017)}.") (define-public r-km-ci (package (name "r-km-ci") - (version "0.5-2") + (version "0.5-6") (source (origin (method url-fetch) (uri (cran-uri "km.ci" version)) (sha256 (base32 - "1l6kw8jppaa1802yc5pbfwwgac56nhwc9p076ivylhms4w7cdf8v")))) + "18sc9vhbdgks8lhk2nfxkkayh8j4j227hl63fm5p04f7z4wm6wc1")))) (properties `((upstream-name . "km.ci"))) (build-system r-build-system) (propagated-inputs @@ -27711,14 +27916,14 @@ Springer.") (define-public r-survmisc (package (name "r-survmisc") - (version "0.5.5") + (version "0.5.6") (source (origin (method url-fetch) (uri (cran-uri "survMisc" version)) (sha256 (base32 - "00nvvl8gz4477ab24rd0xvfksm8msv8h021b9ld5c9cizc41n2bm")))) + "014cf7sfndmib9jmj0p3h67sr750k2pvw7m865zwdpvlqddi44fr")))) (properties `((upstream-name . "survMisc"))) (build-system r-build-system) (propagated-inputs @@ -27954,14 +28159,14 @@ model.") (define-public r-igraph (package (name "r-igraph") - (version "1.2.11") + (version "1.3.0") (source (origin (method url-fetch) (uri (cran-uri "igraph" version)) (sha256 (base32 - "1ph042yinl8ig2x7laha5j1xr14fky9771l5ha87svhynrg732qw")))) + "09dzc8lslljvhj2q46075vxcmlgkvq2qs500zdqyy9g8scq6iqbi")))) (build-system r-build-system) (native-inputs (list gfortran)) @@ -27981,19 +28186,18 @@ more.") (define-public r-workflows (package (name "r-workflows") - (version "0.2.4") + (version "0.2.6") (source (origin (method url-fetch) (uri (cran-uri "workflows" version)) (sha256 (base32 - "1sxrgza922p137z41jcj2iwk19lxzwh6kp4kz7h9kw0b8rvfqwab")))) + "0xhc1j25fjipw8hvcpdbvfm640kp0flwvifj5f7g4n6b3wb8cm6a")))) (properties `((upstream-name . "workflows"))) (build-system r-build-system) (propagated-inputs (list r-cli - r-ellipsis r-generics r-glue r-hardhat @@ -28255,14 +28459,14 @@ Design} (SFD) and to test their quality.") (define-public r-dials (package (name "r-dials") - (version "0.1.0") + (version "0.1.1") (source (origin (method url-fetch) (uri (cran-uri "dials" version)) (sha256 (base32 - "02i9ddzi7gk5bwg87x8bpazk89mn102awgxzp9yw85dgbafqsydh")))) + "1h695g9vklqn0vd53j9k03s0989xjpjr11h5qhz3a0v6465fwm8a")))) (properties `((upstream-name . "dials"))) (build-system r-build-system) (propagated-inputs @@ -28289,14 +28493,14 @@ for creating, simulating, or validating values for such parameters.") (define-public r-tune (package (name "r-tune") - (version "0.1.6") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "tune" version)) (sha256 (base32 - "1356w98ljiay8fwa7narr7j5hfbvi69gy03gr7kqiwnfglyksrza")))) + "05gxlsaqv6sjk11r5g4nkdd6hlb3bnfmc29cx4vln1blha37jx4i")))) (properties `((upstream-name . "tune"))) (build-system r-build-system) (propagated-inputs @@ -28333,14 +28537,14 @@ methods, and post-processing steps.") (define-public r-workflowsets (package (name "r-workflowsets") - (version "0.1.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "workflowsets" version)) (sha256 (base32 - "0596hb17mshpag3vjy2wl6fi2mdw54i9gc5za10vzy8vpkigb9jy")))) + "0q42nhnw0mbivadcfb07v71fp39x8fcnjipvn5l5yhjzc56cfxi8")))) (properties `((upstream-name . "workflowsets"))) (build-system r-build-system) (propagated-inputs @@ -28569,14 +28773,14 @@ analysis using @code{dplyr}, @code{ggplot2}, and other Tidy tools.") (define-public r-parsnip (package (name "r-parsnip") - (version "0.2.0") + (version "0.2.1") (source (origin (method url-fetch) (uri (cran-uri "parsnip" version)) (sha256 (base32 - "0g213c91lzwq9hd22yxkj3igqw04czncnbc4jddnpghp4gpfn1kn")))) + "195i4j38mljv9193yx8lmh65h85yhc52y9vc1mk8zvxi52ks1yln")))) (properties `((upstream-name . "parsnip"))) (build-system r-build-system) (propagated-inputs @@ -28689,14 +28893,14 @@ use.") (define-public r-tidymodels (package (name "r-tidymodels") - (version "0.1.4") + (version "0.2.0") (source (origin (method url-fetch) (uri (cran-uri "tidymodels" version)) (sha256 (base32 - "18krycdn0h1i8swrq6bgj8qnb200rr0pqhr6maq3h1jc66x0y7nd")))) + "1xkv4s4kn7k9137svb39zrm5302gxpxyp1jv5bb6z0xrvj5wwa4i")))) (properties `((upstream-name . "tidymodels"))) (build-system r-build-system) (propagated-inputs @@ -28722,7 +28926,7 @@ use.") r-workflowsets r-yardstick)) (native-inputs - (list r-knitr r-rmarkdown pandoc)) + (list r-knitr)) (home-page "https://github.com/tidymodels/tidymodels") (synopsis "Tidy collection for modeling and statistical analysis") (description @@ -28760,14 +28964,14 @@ this variability problem can be overcome.") (define-public r-mlecens (package (name "r-mlecens") - (version "0.1-4") + (version "0.1-5") (source (origin (method url-fetch) (uri (cran-uri "MLEcens" version)) (sha256 (base32 - "0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945")))) + "0cdl0y44clds4sg8hikhk354a5xrfbyfg8lxrbh1bfg410rkj186")))) (properties `((upstream-name . "MLEcens"))) (build-system r-build-system) (home-page "http://stat.ethz.ch/~maathuis/") @@ -29297,13 +29501,13 @@ Journal of Statistical Software, 39(10), 1-24.") (define-public r-densestbayes (package (name "r-densestbayes") - (version "1.0-2") + (version "1.0-2.1") (source (origin (method url-fetch) (uri (cran-uri "densEstBayes" version)) (sha256 - (base32 "16fb7vkic9q5p8s4f0f215zmb36fcizqr4r2vm9dxxj9rasrg2f3")))) + (base32 "1pzmgn65lv91zg1588qhwczy9f2zgciknlc4l072mvh2i7hncw2b")))) (properties `((upstream-name . "densEstBayes"))) (build-system r-build-system) (propagated-inputs @@ -29664,14 +29868,14 @@ vector machines, and gradient boosting.") (define-public r-bbotk (package (name "r-bbotk") - (version "0.5.1") + (version "0.5.2") (source (origin (method url-fetch) (uri (cran-uri "bbotk" version)) (sha256 (base32 - "1171vcs96j8f4n0rjsbbiscs4nxgd4209lr9biy99lvhjvjdsfsm")))) + "0k1vlh14mfbcgdw2yfhab7shkrqm4d2h6af12mybr9gks26xmw82")))) (properties `((upstream-name . "bbotk"))) (build-system r-build-system) (propagated-inputs @@ -29694,13 +29898,13 @@ annealing.") (define-public r-mlr3tuning (package (name "r-mlr3tuning") - (version "0.12.1") + (version "0.13.0") (source (origin (method url-fetch) (uri (cran-uri "mlr3tuning" version)) (sha256 (base32 - "0qly6bsfazqcf0a7c2a6k3wghczm8v1fxw9pxa76gpw51x2j2ld0")))) + "0czlpi8bshn8cjq7pa1cyy7lpv35g4hv2nbyhc59zrcykzfv8afm")))) (build-system r-build-system) (propagated-inputs (list r-bbotk @@ -29869,14 +30073,14 @@ unit tests of graphics).") (define-public r-vdiffr (package (name "r-vdiffr") - (version "1.0.2") + (version "1.0.4") (source (origin (method url-fetch) (uri (cran-uri "vdiffr" version)) (sha256 (base32 - "1zjwjw8lqqnx7cxj2aik5rn1g67zsyf0bq08yfwwmsi7v2x6ly3x")))) + "1z8nn8yh6jfzb9r7ylmigwh1p30lrclqm6khmp323qqphzmzfdwy")))) (properties `((upstream-name . "vdiffr"))) (build-system r-build-system) (inputs @@ -30527,14 +30731,14 @@ or into raw bitmap vectors for further processing in R.") (define-public r-antiword (package (name "r-antiword") - (version "1.3") + (version "1.3.1") (source (origin (method url-fetch) (uri (cran-uri "antiword" version)) (sha256 (base32 - "034znb0g9wwb8gi1r3z75v3sbb4mh83qrc4y8mbfx5lbgh8zhj6j")) + "123v8zlczwh6fr1v3x7dl3885xlmddq1bqlcxih8zh07w0hlk1k2")) (modules '((guix build utils))) (snippet '(begin @@ -30970,14 +31174,14 @@ join the effort of providing interesting text visualisations.") (define-public r-gsa (package (name "r-gsa") - (version "1.03.1") + (version "1.03.2") (source (origin (method url-fetch) (uri (cran-uri "GSA" version)) (sha256 (base32 - "05x9wspah1cdznjpncqam1iawsxdiigyl8v2anyhss2k7wwd94p1")))) + "1f1mrxxdbdlnibgav6nsvbpniz2x3km2svc0hf43spb4zicn0z8p")))) (properties `((upstream-name . "GSA"))) (build-system r-build-system) (home-page "https://statweb.stanford.edu/~tibs/GSA/") @@ -31135,14 +31339,14 @@ in order to customise how it should change with time.") (define-public r-tzdb (package (name "r-tzdb") - (version "0.2.0") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "tzdb" version)) (sha256 (base32 - "1afmav7s29fb5cd920h6vrzg9cvc4jsidfalxpvhlh1b8mfr0df3")))) + "0f3h4zaf9f4l371k6nc1mq6z2f9aj1vaf2inni8jnsds3zng16b0")))) (properties `((upstream-name . "tzdb"))) (build-system r-build-system) (propagated-inputs (list r-cpp11)) @@ -31319,14 +31523,14 @@ Apache2.") (define-public r-exactextractr (package (name "r-exactextractr") - (version "0.7.2") + (version "0.8.1") (source (origin (method url-fetch) (uri (cran-uri "exactextractr" version)) (sha256 (base32 - "0n39dqgsfzybi9yvnpnfdyypl8c9fml80jq0wxssik2n47mvbcif")))) + "11s58vc63r9kah815a18ihb0x2nmnjnpngybw3yr2d6715sz89nc")))) (properties `((upstream-name . "exactextractr"))) (build-system r-build-system) (inputs (list geos)) @@ -31802,14 +32006,14 @@ fully reproducible.") (define-public r-paws-common (package (name "r-paws-common") - (version "0.3.16") + (version "0.3.17") (source (origin (method url-fetch) (uri (cran-uri "paws.common" version)) (sha256 (base32 - "0mdbnbjprghiwz4i9abh62l5q6mncz3iq76wxvj7ncinf89kd83w")))) + "1dg18hwnrjd6m1vjcxfs2vm1zxciivf4vzhq0z76dmmiqz2yjm28")))) (properties `((upstream-name . "paws.common"))) (build-system r-build-system) (propagated-inputs @@ -32440,13 +32644,13 @@ convert dates to MMWR day, week, and year and the reverse.") (define-public r-cccd (package (name "r-cccd") - (version "1.5") + (version "1.6") (source (origin (method url-fetch) (uri (cran-uri "cccd" version)) (sha256 - (base32 "0m364zsrgr7mh1yhl2lqxpaf71gzq3y3pp9qgnj4spiy4iadyy7i")))) + (base32 "0cxh19jqappc6zq9nz3m40ybdmsp12mf7yvflsz96wks3ly2ld4y")))) (properties `((upstream-name . "cccd"))) (build-system r-build-system) (propagated-inputs (list r-deldir r-fnn r-igraph r-proxy)) @@ -32962,3 +33166,23 @@ setting individual scales per panel, resizing panels and providing nested facets. It also allows multiple colour, fill scales per plot and hosts a smaller collection of stats, geoms and axis guides.") (license license:expat))) + +(define-public r-zoeppritz + (package + (name "r-zoeppritz") + (version "1.0-8") + (source (origin + (method url-fetch) + (uri (cran-uri "zoeppritz" version)) + (sha256 + (base32 + "1711szx9zz17q6pfinyzlyrw7m9772c8ywlixqar2l165bkjalgm")))) + (properties `((upstream-name . "zoeppritz"))) + (build-system r-build-system) + (home-page "https://cran.r-project.org/package=zoeppritz") + (synopsis "Seismic reflection and scattering coefficients for waves") + (description + "The @code{r-zoeppritz} package calculates and plots scattering matrix +coefficients or scattering amplitudes, for seismological P and S-waves at an +interface.") + (license license:gpl2+))) |