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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-05-02 13:33:16 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-05-02 13:33:16 +0200 |
| commit | 5caad9f2526a352fbe78ba3c687ab8bf20162ca0 (patch) | |
| tree | 40c88d8ce0d75d87d66811d14dd4de5458d2a006 /gnu/packages/bioinformatics.scm | |
| parent | 9dafaf163574edca5cb4eac0f8dc3edbb0ef0a75 (diff) | |
| download | guix-patches-5caad9f2526a352fbe78ba3c687ab8bf20162ca0.tar guix-patches-5caad9f2526a352fbe78ba3c687ab8bf20162ca0.tar.gz | |
gnu: python-cooler: Use more recent cytoolz.
* gnu/packages/bioinformatics.scm (python-cooler)[propagated-inputs]: Replace
python-cytoolz-for-cooler with python-cytoolz.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 8 insertions, 1 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 40ccba247c..4a3600fd0c 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12652,6 +12652,13 @@ fasta subsequences.") (arguments `(#:phases (modify-phases %standard-phases + ;; cooler requests cytoolz<0.11. It only uses cytoolz for "compose", + ;; which composes two functions. + (add-after 'unpack 'use-recent-cytoolz + (lambda _ + (substitute* '("requirements.txt" + "cooler.egg-info/requires.txt") + (("cytoolz.*<.*0.11") "cytoolz")))) (add-after 'unpack 'patch-tests (lambda _ (substitute* "tests/test_create.py" @@ -12677,7 +12684,7 @@ fasta subsequences.") (list python-asciitree python-biopython python-click - python-cytoolz-for-cooler + python-cytoolz python-dask python-h5py python-multiprocess |