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authorzimoun <zimon.toutoune@gmail.com>2021-05-21 22:26:11 +0200
committerRicardo Wurmus <rekado@elephly.net>2021-05-31 15:38:59 +0200
commit043c309d154a69455e0fa7624afa98b912bffb6d (patch)
tree338c2ef5330913a7af0d45939edcced5b4571688 /gnu/packages/bioinformatics.scm
parente0c81584ea47ebce218a9ef37accab0889860fc1 (diff)
downloadguix-patches-043c309d154a69455e0fa7624afa98b912bffb6d.tar
guix-patches-043c309d154a69455e0fa7624afa98b912bffb6d.tar.gz
gnu: r-rhtslib: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-rhtslib): Move from here... * gnu/packages/bioconductor.scm (r-rhtslib): ...to here.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r--gnu/packages/bioinformatics.scm31
1 files changed, 0 insertions, 31 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3bd982ae31..fd83c4dd48 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8046,37 +8046,6 @@ characteristic tag shift values in these assays.")
secondary structure and comparative analysis in R.")
(license license:gpl3+)))
-(define-public r-rhtslib
- (package
- (name "r-rhtslib")
- (version "1.22.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "Rhtslib" version))
- (sha256
- (base32
- "18wag2jnpda6078xjkpfdvar1gkb2myhw83gg03l39sabh35qya4"))))
- (properties `((upstream-name . "Rhtslib")))
- (build-system r-build-system)
- ;; Without this a temporary directory ends up in the Rhtslib.so binary,
- ;; which makes R abort the build.
- (arguments '(#:configure-flags '("--no-staged-install")))
- (propagated-inputs
- `(("curl" ,curl)
- ("zlib" ,zlib) ; packages using rhtslib need to link with zlib
- ("r-zlibbioc" ,r-zlibbioc)))
- (native-inputs
- `(("pkg-config" ,pkg-config)
- ("r-knitr" ,r-knitr)))
- (home-page "https://github.com/nhayden/Rhtslib")
- (synopsis "High-throughput sequencing library as an R package")
- (description
- "This package provides the HTSlib C library for high-throughput
-nucleotide sequence analysis. The package is primarily useful to developers
-of other R packages who wish to make use of HTSlib.")
- (license license:lgpl2.0+)))
-
(define-public r-bamsignals
(package
(name "r-bamsignals")