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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-05-06 14:11:18 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-05-06 15:34:31 +0200 |
| commit | 6f5cbac67d950bcc5b1a4745dd1f44a22766639e (patch) | |
| tree | 079ad145d5414eec494014d3bc4325969dbc40ab /gnu/packages/bioinformatics.scm | |
| parent | f550c0ccb05920fd7c7ac01b73f801370b5acc12 (diff) | |
| download | guix-patches-6f5cbac67d950bcc5b1a4745dd1f44a22766639e.tar guix-patches-6f5cbac67d950bcc5b1a4745dd1f44a22766639e.tar.gz | |
gnu: pigx-sars-cov-2: Update to 0.0.7.
* gnu/packages/bioinformatics.scm (pigx-sars-cov-2): Update to 0.0.7.
[inputs]: Remove bbmap and prinseq; add r-viridis.
[arguments]: Remove autoreconf phase.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 16 |
1 files changed, 6 insertions, 10 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2658d380af..ae35087964 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11310,23 +11310,20 @@ based methods.") (define-public pigx-sars-cov-2 (package (name "pigx-sars-cov-2") - (version "0.0.5") + (version "0.0.7") (source (origin (method url-fetch) - (uri (string-append "https://github.com/BIMSBbioinfo/pigx_sarscov2_ww/" - "releases/download/v" version - "/pigx_sars-cov2-ww-" version ".tar.gz")) + (uri (string-append "https://github.com/BIMSBbioinfo/pigx_sars-cov-2" + "/releases/download/v" version + "/pigx_sars-cov-2-" version ".tar.gz")) (sha256 (base32 - "1fkr9gp09zl5n7kdqmy9lrnq28k2z97wg74wgkyfssfyxvmq9cr2")))) + "1bqm03ypf7l8lrkjkydxzn7vy0qlps3v9c5cpz2wb008zw44bi3k")))) (build-system gnu-build-system) (arguments `(#:tests? #f ;requires huge kraken database #:phases (modify-phases %standard-phases - (add-before 'bootstrap 'autoreconf - (lambda _ - (invoke "autoreconf" "-vif"))) (add-before 'configure 'set-PYTHONPATH (lambda _ (setenv "PYTHONPATH" (getenv "GUIX_PYTHONPATH"))))))) @@ -11334,7 +11331,6 @@ based methods.") (list automake autoconf)) (inputs (list bash-minimal - bbmap bedtools bwa ensembl-vep @@ -11345,7 +11341,6 @@ based methods.") krona-tools lofreq multiqc - prinseq python-pyyaml python-wrapper r-base64url @@ -11361,6 +11356,7 @@ based methods.") r-rmarkdown r-stringr r-tidyr + r-viridis samtools snakemake wget)) |