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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-04-27 11:48:00 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-04-27 15:12:47 +0200 |
| commit | 4ca009c03674529fbeb85aa559f867364845fe0b (patch) | |
| tree | 4ea56e62642c2b516604060f2d40a9177f22f391 /gnu/packages/bioinformatics.scm | |
| parent | 02ed8be3acb20eac54086c78829f858184a9fc8c (diff) | |
| download | guix-patches-4ca009c03674529fbeb85aa559f867364845fe0b.tar guix-patches-4ca009c03674529fbeb85aa559f867364845fe0b.tar.gz | |
gnu: flexbar: Enable tests.
* gnu/packages/bioinformatics.scm (flexbar): Enable tests.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 15 |
1 files changed, 10 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index ccfda627f3..bcb7eba48f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -623,15 +623,20 @@ results. The FASTX-Toolkit tools perform some of these preprocessing tasks.") "13jaykc3y1x8y5nn9j8ljnb79s5y51kyxz46hdmvvjj6qhyympmf")))) (build-system cmake-build-system) (arguments - `(;; There is no test target, although there is a directory containing - ;; test data and scripts (launched by flexbar_validate.sh). - #:tests? #f - #:configure-flags (list + `(#:configure-flags (list (string-append "-DFLEXBAR_BINARY_DIR=" (assoc-ref %outputs "out") "/bin/")) #:phases - (alist-delete 'install %standard-phases))) + (alist-replace + 'check + (lambda* (#:key outputs #:allow-other-keys) + (setenv "PATH" (string-append + (assoc-ref outputs "out") "/bin:" + (getenv "PATH"))) + (chdir "../flexbar_v2.5_src/test") + (zero? (system* "bash" "flexbar_validate.sh"))) + (alist-delete 'install %standard-phases)))) (inputs `(("tbb" ,tbb) ("zlib" ,zlib))) |