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| author | Lars-Dominik Braun <lars@6xq.net> | 2021-10-05 15:42:38 +0200 |
|---|---|---|
| committer | Lars-Dominik Braun <lars@6xq.net> | 2021-10-08 09:13:54 +0200 |
| commit | fb1ffc53ba6177e28aa296ae2e9c2e812f92e28e (patch) | |
| tree | 86674f7b7fb0b8fa628d73c648b535ab174ca94c /gnu/packages/bioinformatics.scm | |
| parent | ff5fea3dfe64b933f7698134de9dba14ef8d0694 (diff) | |
| download | guix-patches-fb1ffc53ba6177e28aa296ae2e9c2e812f92e28e.tar guix-patches-fb1ffc53ba6177e28aa296ae2e9c2e812f92e28e.tar.gz | |
gnu: pigx-bsseq: Remove dependency on pandoc-citeproc.
* gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Add patch.
* gnu/local.mk: Register it.
* gnu/packages/bioinformatics.scm (pigx-bsseq)[source]: Use it.
[native-inputs]: Add automake/autoconf.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 10 |
1 files changed, 8 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 932073ef5a..63e91438cb 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10644,7 +10644,8 @@ in an easily configurable manner.") "/pigx_bsseq-" version ".tar.gz")) (sha256 (base32 - "05al5dacfp1vf1x3cq20jhd6w4xj5vaxslzaka6yrpg0av8sh3k3")))) + "05al5dacfp1vf1x3cq20jhd6w4xj5vaxslzaka6yrpg0av8sh3k3")) + (patches (search-patches "pigx-bsseq-no-citeproc.patch")))) (build-system gnu-build-system) (arguments `(;; TODO: tests currently require 12+GB of RAM. See @@ -10652,6 +10653,9 @@ in an easily configurable manner.") #:tests? #f #:phases (modify-phases %standard-phases + (add-before 'bootstrap 'autoreconf + (lambda _ + (invoke "autoreconf" "-vif"))) (add-before 'check 'set-timezone ;; The readr package is picky about timezones. (lambda* (#:key inputs #:allow-other-keys) @@ -10660,7 +10664,9 @@ in an easily configurable manner.") (string-append (assoc-ref inputs "tzdata") "/share/zoneinfo"))))))) (native-inputs - `(("tzdata" ,tzdata))) + `(("tzdata" ,tzdata) + ("automake" ,automake) + ("autoconf" ,autoconf))) (inputs `(("coreutils" ,coreutils) ("sed" ,sed) |