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author | Marius Bakke <mbakke@fastmail.com> | 2019-02-09 21:11:00 +0100 |
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committer | Marius Bakke <mbakke@fastmail.com> | 2019-02-09 21:11:00 +0100 |
commit | ebbb7286b91e21cb26153e3d0a3ea8017cf16224 (patch) | |
tree | c41eccbe937b0541109cc3b2d45c372ebf826755 /gnu/packages/bioinformatics.scm | |
parent | d41f63942b5df85223f5fae110253bc30869653b (diff) | |
parent | aefa29123feaf4202010675eae0a563b3ee90cf1 (diff) | |
download | guix-patches-ebbb7286b91e21cb26153e3d0a3ea8017cf16224.tar guix-patches-ebbb7286b91e21cb26153e3d0a3ea8017cf16224.tar.gz |
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 17 |
1 files changed, 12 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 23eba74175..02cafb2358 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6020,7 +6020,7 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.") (define-public star (package (name "star") - (version "2.7.0a") + (version "2.7.0b") (source (origin (method git-fetch) (uri (git-reference @@ -6029,7 +6029,7 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.") (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "1yx28gra6gqdx1ps5y8mpdinsn8r0dhsc2m3gcvjfrk71i9yhd6l")) + "1lih6cbpvnvhyvvswdhy06mwyzvwax96m723378v4z6psqzsh11d")) (modules '((guix build utils))) (snippet '(begin @@ -6055,6 +6055,13 @@ application of SortMeRNA is filtering rRNA from metatranscriptomic data.") (("(COMPILATION_TIME_PLACE=\")(.*)(\")" _ pre mid post) (string-append pre "Built with Guix" post))) #t)) + ;; See https://github.com/alexdobin/STAR/pull/562 + (add-after 'enter-source-dir 'add-missing-header + (lambda _ + (substitute* "SoloReadFeature_inputRecords.cpp" + (("#include \"binarySearch2.h\"" h) + (string-append h "\n#include <math.h>"))) + #t)) (add-after 'enter-source-dir 'do-not-use-bundled-htslib (lambda _ (substitute* "Makefile" @@ -8657,7 +8664,7 @@ library implementing most of the pipeline's features.") (define-public rcas-web (package (name "rcas-web") - (version "0.0.5") + (version "0.1.0") (source (origin (method url-fetch) @@ -8666,7 +8673,7 @@ library implementing most of the pipeline's features.") "/rcas-web-" version ".tar.gz")) (sha256 (base32 - "0igz7jpcf7cm9800zcag6p3gd1i649figrhbdba6cjkm8f4gfspr")))) + "0wq951aj45gqki1bickg876i993lmawkp8x24agg264br5x716db")))) (build-system gnu-build-system) (arguments `(#:phases @@ -8689,7 +8696,7 @@ library implementing most of the pipeline's features.") ("r-rcas" ,r-rcas) ("guile-next" ,guile-2.2) ("guile-json" ,guile-json) - ("guile-redis" ,guile2.2-redis))) + ("guile-redis" ,guile-redis))) (native-inputs `(("pkg-config" ,pkg-config))) (home-page "https://github.com/BIMSBbioinfo/rcas-web") |