diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 21:29:40 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-11-07 21:41:55 +0100 |
| commit | 4257c10ad28bbac98a4ffe86d02c9ef83cfa1a8b (patch) | |
| tree | 12155d65fda5566dd5eeba13aab80ab4525ad57f /gnu/packages/bioinformatics.scm | |
| parent | 1a20bcadf3d75cfce0750c58dee3d5ab23327b99 (diff) | |
| download | guix-patches-4257c10ad28bbac98a4ffe86d02c9ef83cfa1a8b.tar guix-patches-4257c10ad28bbac98a4ffe86d02c9ef83cfa1a8b.tar.gz | |
gnu: kentutils: Fetch sources from git.
* gnu/packages/bioinformatics.scm (kentutils)[source]: Fetch from git.
[arguments]: Add phase "fix-permissions".
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 13 |
1 files changed, 8 insertions, 5 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c65937ad6c..b5523c31fd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -11570,13 +11570,14 @@ models. TADbit is complemented by TADkit for visualizing 3D models.") (version "302.0.0") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/ENCODE-DCC/kentUtils/" - "archive/v" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/ENCODE-DCC/kentUtils.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 (base32 - "134aja3k1cj32kbk1nnw0q9gxjb2krr15q6sga8qldzvc0585rmm")) + "0n1wbyjpzii2b9qhyp9r1q76j623cggpg3y8fmw78ld3z4y7ivha")) (modules '((guix build utils) (srfi srfi-26) (ice-9 ftw))) @@ -11627,6 +11628,8 @@ models. TADbit is complemented by TADkit for visualizing 3D models.") #:tests? #f #:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-permissions + (lambda _ (make-file-writable "src/inc/localEnvironment.mk") #t)) (add-after 'unpack 'fix-paths (lambda _ (substitute* "Makefile" |