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| author | Lars-Dominik Braun <lars@6xq.net> | 2021-07-21 11:48:07 +0200 |
|---|---|---|
| committer | Lars-Dominik Braun <lars@6xq.net> | 2021-07-21 13:36:08 +0200 |
| commit | 73830b5da3f71d4418e07e28544207dad2d0809f (patch) | |
| tree | e4c8f03a5cbdf4bfa9dbe417e15d942cdbc97622 /gnu/packages/bioinformatics.scm | |
| parent | ed636babfaf335989b169ad3768f510310680ca5 (diff) | |
| download | guix-patches-73830b5da3f71d4418e07e28544207dad2d0809f.tar guix-patches-73830b5da3f71d4418e07e28544207dad2d0809f.tar.gz | |
gnu: Add r-battenberg.
* gnu/packages/bioinformatics.scm (r-battenberg): New variable.
Diffstat (limited to 'gnu/packages/bioinformatics.scm')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index fbb777400c..0c8ff2b255 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14689,3 +14689,33 @@ instruments, or Pacific Biosciences RSII or Sequel sequencers.") Number Analysis of Tumors} R package that can be used to infer tumour purity, ploidy and allele-specific copy number profiles.") (license license:gpl3))) + +(define-public r-battenberg + (package + (name "r-battenberg") + (version "2.2.9") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Wedge-lab/battenberg.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0nmcq4c7y5g8h8lxsq9vadz9bj4qgqn118alip520ny6czaxki4h")))) + (build-system r-build-system) + (propagated-inputs + `(("r-devtools" ,r-devtools) + ("r-readr" ,r-readr) + ("r-doparallel" ,r-doparallel) + ("r-ggplot2" ,r-ggplot2) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-gridextra" ,r-gridextra) + ("r-gtools" ,r-gtools) + ("r-ascat" ,r-ascat))) + (home-page "https://github.com/Wedge-lab/battenberg") + (synopsis "Subclonal copy number estimation in R") + (description "This package contains the Battenberg R package for subclonal +copy number estimation, as described by +@url{doi:10.1016/j.cell.2012.04.023,Nik-Zainal et al.}") + (license license:gpl3))) |