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| author | Marius Bakke <mbakke@fastmail.com> | 2018-10-22 23:07:16 +0200 |
|---|---|---|
| committer | Marius Bakke <mbakke@fastmail.com> | 2018-10-22 23:07:16 +0200 |
| commit | c166a88dea354f0fb253e7d389e68f1b11fe1de4 (patch) | |
| tree | 24719ff7ec1053c7e997afb10fe3a9bc276efddf /gnu/packages/bioconductor.scm | |
| parent | ffddb42d6c510456997ee6de1c1b8026c9ce6d14 (diff) | |
| parent | 63abd1e2a36d48e1f8f7057a4c844b9cf5733be7 (diff) | |
| download | guix-patches-c166a88dea354f0fb253e7d389e68f1b11fe1de4.tar guix-patches-c166a88dea354f0fb253e7d389e68f1b11fe1de4.tar.gz | |
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu/packages/bioconductor.scm')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 1b779855b2..92b67453f6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -913,3 +913,29 @@ can be analyzed regarding their minimal, maximal and average distances between barcodes. Finally, reads that start with a (possibly mutated) barcode can be demultiplexed, i.e. assigned to their original reference barcode.") (license license:gpl2))) + +(define-public r-ruvseq + (package + (name "r-ruvseq") + (version "1.14.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "RUVSeq" version)) + (sha256 + (base32 + "16i5sm5af761k4zvspfi8jknsgln48bn538hxqqmlaq7wvlfxqxj")))) + (properties `((upstream-name . "RUVSeq"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-edaseq" ,r-edaseq) + ("r-edger" ,r-edger) + ("r-mass" ,r-mass))) + (home-page "https://github.com/drisso/RUVSeq") + (synopsis "Remove unwanted variation from RNA-Seq data") + (description + "This package implements methods to @dfn{remove unwanted variation} (RUV) +of Risso et al. (2014) for the normalization of RNA-Seq read counts between +samples.") + (license license:artistic2.0))) |