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author | Marius Bakke <mbakke@fastmail.com> | 2020-03-21 22:16:02 +0100 |
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committer | Marius Bakke <mbakke@fastmail.com> | 2020-03-21 22:16:02 +0100 |
commit | d19b14c8349ce8cacb62619ab68953265daeeca7 (patch) | |
tree | 9aacc6f9378ca69951c87232b3a7526fef2f2054 /gnu/packages/bioconductor.scm | |
parent | 680b56116a4840a281a45cb130fd45d6d3d46c56 (diff) | |
parent | ee4c927f33a1d3b01cf36be3c74227f6b7fd69ff (diff) | |
download | guix-patches-d19b14c8349ce8cacb62619ab68953265daeeca7.tar guix-patches-d19b14c8349ce8cacb62619ab68953265daeeca7.tar.gz |
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r-- | gnu/packages/bioconductor.scm | 21 |
1 files changed, 12 insertions, 9 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index bc7623eac3..6ec74140e3 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -5316,14 +5316,14 @@ coefficients).") (define-public r-biosigner (package (name "r-biosigner") - (version "1.14.0") + (version "1.14.2") (source (origin (method url-fetch) (uri (bioconductor-uri "biosigner" version)) (sha256 (base32 - "1kdfhw629qczrfms0jmphqz0ksjzi8js00xj92h1lnv092npfk0j")))) + "184vbbd010yzqv0qn1prxiazibxwiacvlpg9yzcgyhamcx9bvq73")))) (build-system r-build-system) (propagated-inputs `(("r-biobase" ,r-biobase) @@ -5332,10 +5332,7 @@ coefficients).") ("r-randomforest" ,r-randomforest) ("r-ropls" ,r-ropls))) (native-inputs - `(("r-knitr" ,r-knitr) - ("r-rmarkdown" ,r-rmarkdown) - ("pandoc" ,ghc-pandoc) - ("pandoc-citeproc" ,ghc-pandoc-citeproc))) ; all for vignettes + `(("r-knitr" ,r-knitr))) (home-page "https://bioconductor.org/packages/biosigner/") (synopsis "Signature discovery from omics data") (description @@ -7402,18 +7399,19 @@ gene selection, testing relationships, and so on.") (define-public r-biocpkgtools (package (name "r-biocpkgtools") - (version "1.4.0") + (version "1.4.6") (source (origin (method url-fetch) (uri (bioconductor-uri "BiocPkgTools" version)) (sha256 (base32 - "0gyhb3071pxmvaxla7cxy9k97s3z3ynl62jnqz9jnkd53c7jnd53")))) + "0grwnmncmpqcplbfw3j210m1a8f7mmdizklh4zksg4ic21dpjj1a")))) (properties `((upstream-name . "BiocPkgTools"))) (build-system r-build-system) (propagated-inputs - `(("r-biocmanager" ,r-biocmanager) + `(("r-biocfilecache" ,r-biocfilecache) + ("r-biocmanager" ,r-biocmanager) ("r-biocviews" ,r-biocviews) ("r-dplyr" ,r-dplyr) ("r-dt" ,r-dt) @@ -7425,14 +7423,19 @@ gene selection, testing relationships, and so on.") ("r-igraph" ,r-igraph) ("r-jsonlite" ,r-jsonlite) ("r-magrittr" ,r-magrittr) + ("r-rappdirs" ,r-rappdirs) ("r-rbgl" ,r-rbgl) ("r-readr" ,r-readr) ("r-rex" ,r-rex) + ("r-rlang" ,r-rlang) ("r-rvest" ,r-rvest) ("r-stringr" ,r-stringr) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) + ("r-tidyselect" ,r-tidyselect) ("r-xml2" ,r-xml2))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/seandavi/BiocPkgTools") (synopsis "Collection of tools for learning about Bioconductor packages") (description |