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author | Ludovic Courtès <ludo@gnu.org> | 2019-06-27 23:33:48 +0200 |
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committer | Ludovic Courtès <ludo@gnu.org> | 2019-06-27 23:33:48 +0200 |
commit | 5cc1075a76392666d3d733837f5c6252b1e48002 (patch) | |
tree | aff2a303881a6fe53021a6e78a767958e608719b /gnu/packages/bioconductor.scm | |
parent | 9c2563a80b6f1d8fb8677f5314e6180ea9916aa5 (diff) | |
parent | c30d117822a8ca26cd8c06c0a3974955bef68eac (diff) | |
download | guix-patches-5cc1075a76392666d3d733837f5c6252b1e48002.tar guix-patches-5cc1075a76392666d3d733837f5c6252b1e48002.tar.gz |
Merge branch 'master' into core-updates
Diffstat (limited to 'gnu/packages/bioconductor.scm')
-rw-r--r-- | gnu/packages/bioconductor.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a1f7b2d2a8..92f2e4f3ab 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4745,3 +4745,27 @@ enhancers. The annotatr package provides an easy way to summarize and visualize the intersection of genomic sites/regions with genomic annotations.") (license license:gpl3))) + +(define-public r-rsubread + (package + (name "r-rsubread") + (version "1.34.2") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "Rsubread" version)) + (sha256 + (base32 + "0bsrw61wcav0q22c5m6gr0vn1f3c3ld8gxj730wcab6dj196z6q3")))) + (properties `((upstream-name . "Rsubread"))) + (build-system r-build-system) + (inputs `(("zlib" ,zlib))) + (home-page "https://bioconductor.org/packages/Rsubread/") + (synopsis "Subread sequence alignment and counting for R") + (description + "This package provides tools for alignment, quantification and analysis +of second and third generation sequencing data. It includes functionality for +read mapping, read counting, SNP calling, structural variant detection and +gene fusion discovery. It can be applied to all major sequencing techologies +and to both short and long sequence reads.") + (license license:gpl3))) |